Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0792430 | XP_003627957.1 | 83.285 | 347 | 51 | 2 | 2 | 342 | 5 | 350 | 0.0 | 593 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0792430 | sp|Q8L5A7|SOT15_ARATH | 48.649 | 333 | 155 | 6 | 6 | 328 | 25 | 351 | 5.25e-103 | 310 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0792430 | G7LHK8 | 83.285 | 347 | 51 | 2 | 2 | 342 | 5 | 350 | 0.0 | 593 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0680240 | Msa0792430 | 0.811078 | 8.380450e-51 | -8.615850e-47 |
| Msa0792430 | Msa0996080 | 0.807925 | 3.983613e-50 | -8.615850e-47 |
| Msa0792430 | Msa1241180 | 0.856145 | 3.921208e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0792430 | MtrunA17_Chr8g0353731 | 83.285 | 347 | 51 | 2 | 2 | 342 | 5 | 350 | 0.0 | 593 |
| Msa0792430 | MtrunA17_Chr7g0215691 | 59.574 | 329 | 122 | 5 | 4 | 328 | 7 | 328 | 1.37e-132 | 381 |
| Msa0792430 | MtrunA17_Chr8g0353591 | 59.133 | 323 | 118 | 5 | 17 | 328 | 2 | 321 | 5.05e-130 | 374 |
| Msa0792430 | MtrunA17_Chr8g0353721 | 57.440 | 336 | 132 | 6 | 2 | 328 | 5 | 338 | 1.52e-129 | 374 |
| Msa0792430 | MtrunA17_Chr7g0215701 | 60.429 | 326 | 121 | 6 | 8 | 328 | 5 | 327 | 7.45e-128 | 369 |
| Msa0792430 | MtrunA17_Chr8g0351331 | 57.276 | 323 | 131 | 5 | 20 | 337 | 13 | 333 | 6.96e-126 | 364 |
| Msa0792430 | MtrunA17_Chr3g0081701 | 57.276 | 323 | 130 | 5 | 9 | 328 | 15 | 332 | 8.52e-122 | 354 |
| Msa0792430 | MtrunA17_Chr8g0353861 | 88.827 | 179 | 19 | 1 | 1 | 179 | 1 | 178 | 4.25e-111 | 322 |
| Msa0792430 | MtrunA17_Chr8g0354381 | 62.016 | 258 | 91 | 5 | 75 | 328 | 1 | 255 | 5.57e-106 | 311 |
| Msa0792430 | MtrunA17_Chr8g0340661 | 61.132 | 265 | 68 | 6 | 4 | 261 | 7 | 243 | 4.17e-104 | 305 |
| Msa0792430 | MtrunA17_Chr8g0366191 | 51.155 | 303 | 140 | 5 | 28 | 327 | 30 | 327 | 3.07e-100 | 299 |
| Msa0792430 | MtrunA17_Chr8g0353871 | 89.375 | 160 | 15 | 2 | 75 | 233 | 2 | 160 | 4.96e-100 | 293 |
| Msa0792430 | MtrunA17_Chr3g0096081 | 49.013 | 304 | 146 | 5 | 28 | 327 | 32 | 330 | 2.28e-97 | 291 |
| Msa0792430 | MtrunA17_Chr3g0091901 | 48.684 | 304 | 145 | 6 | 28 | 326 | 30 | 327 | 5.62e-97 | 290 |
| Msa0792430 | MtrunA17_Chr8g0353921 | 64.851 | 202 | 69 | 2 | 127 | 328 | 41 | 240 | 1.90e-92 | 276 |
| Msa0792430 | MtrunA17_Chr8g0366181 | 45.338 | 311 | 141 | 5 | 20 | 327 | 22 | 306 | 2.56e-90 | 273 |
| Msa0792430 | MtrunA17_Chr8g0353691 | 57.143 | 224 | 92 | 3 | 116 | 337 | 28 | 249 | 9.75e-85 | 256 |
| Msa0792430 | MtrunA17_Chr8g0366241 | 54.595 | 185 | 81 | 2 | 143 | 327 | 22 | 203 | 5.96e-67 | 209 |
| Msa0792430 | MtrunA17_Chr3g0094771 | 49.246 | 199 | 98 | 2 | 128 | 326 | 18 | 213 | 3.82e-62 | 197 |
| Msa0792430 | MtrunA17_Chr8g0353841 | 89.216 | 102 | 11 | 0 | 222 | 323 | 1 | 102 | 8.46e-61 | 190 |
| Msa0792430 | MtrunA17_Chr8g0353631 | 64.463 | 121 | 42 | 1 | 208 | 328 | 4 | 123 | 5.69e-41 | 140 |
| Msa0792430 | MtrunA17_Chr8g0353671 | 46.067 | 89 | 30 | 1 | 217 | 305 | 44 | 114 | 1.52e-18 | 80.1 |
| Msa0792430 | MtrunA17_Chr8g0366161 | 49.180 | 61 | 31 | 0 | 225 | 285 | 2 | 62 | 1.96e-14 | 67.4 |
| Msa0792430 | MtrunA17_Chr3g0094781 | 38.158 | 76 | 47 | 0 | 20 | 95 | 23 | 98 | 4.29e-13 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0792430 | AT5G07010.1 | 48.649 | 333 | 155 | 6 | 6 | 328 | 25 | 351 | 5.33e-104 | 310 |
| Msa0792430 | AT5G07000.1 | 47.590 | 332 | 159 | 7 | 6 | 328 | 14 | 339 | 1.40e-96 | 290 |
| Msa0792430 | AT3G45070.1 | 45.033 | 302 | 158 | 5 | 28 | 326 | 20 | 316 | 1.12e-84 | 259 |
| Msa0792430 | AT3G45070.3 | 45.033 | 302 | 158 | 5 | 28 | 326 | 25 | 321 | 1.14e-84 | 259 |
| Msa0792430 | AT3G45070.2 | 45.033 | 302 | 158 | 5 | 28 | 326 | 52 | 348 | 3.33e-84 | 259 |
| Msa0792430 | AT1G13420.1 | 43.189 | 301 | 166 | 2 | 28 | 328 | 31 | 326 | 3.17e-83 | 256 |
| Msa0792430 | AT1G18590.1 | 40.881 | 318 | 177 | 5 | 16 | 328 | 27 | 338 | 1.05e-81 | 252 |
| Msa0792430 | AT3G45080.1 | 45.215 | 303 | 157 | 6 | 28 | 326 | 25 | 322 | 2.37e-81 | 251 |
| Msa0792430 | AT2G03770.1 | 41.667 | 312 | 166 | 5 | 20 | 328 | 19 | 317 | 2.98e-80 | 248 |
| Msa0792430 | AT5G43690.1 | 42.069 | 290 | 161 | 3 | 43 | 328 | 40 | 326 | 2.25e-78 | 243 |
| Msa0792430 | AT1G74100.1 | 39.450 | 327 | 179 | 7 | 16 | 332 | 19 | 336 | 7.95e-78 | 242 |
| Msa0792430 | AT2G14920.1 | 40.196 | 306 | 174 | 5 | 28 | 328 | 27 | 328 | 2.32e-72 | 228 |
| Msa0792430 | AT1G74090.1 | 39.937 | 318 | 180 | 5 | 16 | 328 | 31 | 342 | 1.16e-69 | 221 |
| Msa0792430 | AT2G03760.1 | 40.881 | 318 | 175 | 5 | 14 | 328 | 12 | 319 | 2.28e-69 | 220 |
| Msa0792430 | AT1G28170.1 | 40.181 | 331 | 185 | 7 | 1 | 328 | 1 | 321 | 2.46e-69 | 220 |
| Msa0792430 | AT2G03750.1 | 39.683 | 315 | 177 | 7 | 17 | 327 | 39 | 344 | 3.33e-69 | 220 |
| Msa0792430 | AT4G26280.1 | 40.461 | 304 | 153 | 6 | 28 | 326 | 22 | 302 | 9.04e-68 | 215 |
| Msa0792430 | AT1G13430.1 | 39.937 | 318 | 172 | 5 | 28 | 328 | 31 | 346 | 5.00e-67 | 214 |
| Msa0792430 | AT2G27570.1 | 36.545 | 301 | 130 | 5 | 28 | 326 | 25 | 266 | 1.73e-57 | 187 |
Find 44 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACATTGAAAATGTAAATTT+TGG | 0.073074 | 5_3:-3667069 | None:intergenic |
| TAACTCCATTTGGTTCATTT+TGG | 0.126466 | 5_3:+3667566 | Msa0792430:CDS |
| AACCAAGTGGTGCCTGATTT+TGG | 0.207190 | 5_3:-3667181 | None:intergenic |
| GGACTTTCGTTAATAAAATA+AGG | 0.274049 | 5_3:+3667479 | Msa0792430:CDS |
| AGGCACTAGTTTATGTATAA+TGG | 0.281751 | 5_3:-3667272 | None:intergenic |
| AACAACAATATCATTGTCTT+TGG | 0.287355 | 5_3:-3667149 | None:intergenic |
| TCACCTGGTTATTGTCTTGT+TGG | 0.333968 | 5_3:-3667009 | None:intergenic |
| GATTATTTGATATTATTAGT+AGG | 0.351982 | 5_3:-3667964 | None:intergenic |
| TAAATAAATCTGGATTTATT+CGG | 0.353358 | 5_3:+3667800 | Msa0792430:CDS |
| TATATAAACTATCTTACAAT+TGG | 0.361540 | 5_3:-3667422 | None:intergenic |
| ATAGGTTGTATCAAATTTGA+TGG | 0.368800 | 5_3:-3667100 | None:intergenic |
| AAGCTTAAAATTTGTAAAGA+TGG | 0.370416 | 5_3:-3667511 | None:intergenic |
| AAATTACCTTTCCTCTTCAA+TGG | 0.391255 | 5_3:+3667876 | Msa0792430:CDS |
| TGTATAATGGATTTAAGTAA+TGG | 0.402981 | 5_3:-3667259 | None:intergenic |
| GAAAGGCCAAAGTAGGAGAT+TGG | 0.411865 | 5_3:+3667851 | Msa0792430:CDS |
| TGTAACGGGGTAACTCCATT+TGG | 0.413155 | 5_3:+3667556 | Msa0792430:CDS |
| GTTGCAAGCTTACCAAAATC+AGG | 0.416474 | 5_3:+3667169 | Msa0792430:CDS |
| GAATTGGAGGTAAATAAATC+TGG | 0.428912 | 5_3:+3667790 | Msa0792430:CDS |
| ATTATTTGATATTATTAGTA+GGG | 0.445230 | 5_3:-3667963 | None:intergenic |
| GACTTGGCAAGTGAAGAAAA+TGG | 0.456662 | 5_3:-3667385 | None:intergenic |
| CGCAATCAATACTCATTTGA+GGG | 0.470403 | 5_3:+3667232 | Msa0792430:CDS |
| GGACTCTTCTTGAATTGACT+TGG | 0.478308 | 5_3:-3667401 | None:intergenic |
| TGCTCCCAAAATGAACCAAA+TGG | 0.480541 | 5_3:-3667571 | None:intergenic |
| AGCATAAAGATGACGTTCAA+TGG | 0.493337 | 5_3:-3667296 | None:intergenic |
| GAACAAATTCTTCTTTCGAA+AGG | 0.498435 | 5_3:+3667834 | Msa0792430:CDS |
| GATTCCTCTTCTTGAGTGAA+AGG | 0.499673 | 5_3:-3667715 | None:intergenic |
| TGAAACGATGAAGGAATTGG+AGG | 0.505173 | 5_3:+3667777 | Msa0792430:CDS |
| TCGCAATCAATACTCATTTG+AGG | 0.523763 | 5_3:+3667231 | Msa0792430:CDS |
| TTTCTTCCATTGAAGAGGAA+AGG | 0.525936 | 5_3:-3667882 | None:intergenic |
| ATTGTGGATGAAAAGTTAAG+TGG | 0.528427 | 5_3:+3667916 | Msa0792430:CDS |
| TTCTTTCGAAAGGCCAAAGT+AGG | 0.528998 | 5_3:+3667844 | Msa0792430:CDS |
| TACCAAAATCAGGCACCACT+TGG | 0.531615 | 5_3:+3667179 | Msa0792430:CDS |
| TATGACACAAAAGTATCGAA+TGG | 0.571249 | 5_3:-3667454 | None:intergenic |
| TAAAGATGACGTTCAATGGA+AGG | 0.571701 | 5_3:-3667292 | None:intergenic |
| TAGGAAGTGAGAGGTTCACC+TGG | 0.588887 | 5_3:-3667024 | None:intergenic |
| TGACTCTCTAAGTGGCTCAT+CGG | 0.594972 | 5_3:-3667940 | None:intergenic |
| CTATCCTTTCACTCAAGAAG+AGG | 0.595008 | 5_3:+3667711 | Msa0792430:CDS |
| AAGAGAGAGAAATCAAAGGA+TGG | 0.601666 | 5_3:+3666974 | Msa0792430:CDS |
| CACTTCCTAAAGAAAATGCG+TGG | 0.620703 | 5_3:+3667038 | Msa0792430:CDS |
| TAGTAGGGTGACTCTCTAAG+TGG | 0.636853 | 5_3:-3667948 | None:intergenic |
| TTTAAAGAGAGAGAAATCAA+AGG | 0.648638 | 5_3:+3666970 | Msa0792430:CDS |
| ACTTGAAAGAAAGTATGACT+AGG | 0.658684 | 5_3:+3667605 | Msa0792430:CDS |
| TGTAAGTGCTCTCAACCAAG+TGG | 0.667240 | 5_3:-3667194 | None:intergenic |
| AAGCCAACAAGACAATAACC+AGG | 0.706932 | 5_3:+3667006 | Msa0792430:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACATTGAAAATGTAAATTTT+GGG | - | chr5_3:3667071-3667090 | None:intergenic | 15.0% |
| !!! | AACATTGAAAATGTAAATTT+TGG | - | chr5_3:3667072-3667091 | None:intergenic | 15.0% |
| !!! | ATTTACATTTTCAATGTTTT+TGG | + | chr5_3:3667074-3667093 | Msa0792430:CDS | 15.0% |
| !!! | TTATTTTTGATATAGGAATT+TGG | - | chr5_3:3667336-3667355 | None:intergenic | 15.0% |
| !! | TATATAAACTATCTTACAAT+TGG | - | chr5_3:3667425-3667444 | None:intergenic | 15.0% |
| !! | TAAATAAATCTGGATTTATT+CGG | + | chr5_3:3667800-3667819 | Msa0792430:CDS | 15.0% |
| !!! | ACATTGAAAATGTAAATTTT+GGG | - | chr5_3:3667071-3667090 | None:intergenic | 15.0% |
| !!! | AACATTGAAAATGTAAATTT+TGG | - | chr5_3:3667072-3667091 | None:intergenic | 15.0% |
| !!! | ATTTACATTTTCAATGTTTT+TGG | + | chr5_3:3667074-3667093 | Msa0792430:CDS | 15.0% |
| !!! | TTATTTTTGATATAGGAATT+TGG | - | chr5_3:3667336-3667355 | None:intergenic | 15.0% |
| !! | TATATAAACTATCTTACAAT+TGG | - | chr5_3:3667425-3667444 | None:intergenic | 15.0% |
| !! | TAAATAAATCTGGATTTATT+CGG | + | chr5_3:3667800-3667819 | Msa0792430:CDS | 15.0% |
| !!! | TTGTTTTGAAAAGAGATTAT+AGG | - | chr5_3:3667121-3667140 | None:intergenic | 20.0% |
| !!! | TGTATAATGGATTTAAGTAA+TGG | - | chr5_3:3667262-3667281 | None:intergenic | 20.0% |
| !!! | GGTTCAATTATTTTTGATAT+AGG | - | chr5_3:3667343-3667362 | None:intergenic | 20.0% |
| !! | TATCAAAAATAATTGAACCA+AGG | + | chr5_3:3667344-3667363 | Msa0792430:CDS | 20.0% |
| !! | AAGCTTAAAATTTGTAAAGA+TGG | - | chr5_3:3667514-3667533 | None:intergenic | 20.0% |
| !!! | TTTACAAATTTTAAGCTTAG+AGG | + | chr5_3:3667516-3667535 | Msa0792430:CDS | 20.0% |
| !! | TTCAAAAATAGAACTTTGTT+TGG | - | chr5_3:3667631-3667650 | None:intergenic | 20.0% |
| !!! | TTGTTTTGAAAAGAGATTAT+AGG | - | chr5_3:3667121-3667140 | None:intergenic | 20.0% |
| !!! | TGTATAATGGATTTAAGTAA+TGG | - | chr5_3:3667262-3667281 | None:intergenic | 20.0% |
| !!! | GGTTCAATTATTTTTGATAT+AGG | - | chr5_3:3667343-3667362 | None:intergenic | 20.0% |
| !! | TATCAAAAATAATTGAACCA+AGG | + | chr5_3:3667344-3667363 | Msa0792430:CDS | 20.0% |
| !! | AAGCTTAAAATTTGTAAAGA+TGG | - | chr5_3:3667514-3667533 | None:intergenic | 20.0% |
| !!! | TTTACAAATTTTAAGCTTAG+AGG | + | chr5_3:3667516-3667535 | Msa0792430:CDS | 20.0% |
| !! | TTCAAAAATAGAACTTTGTT+TGG | - | chr5_3:3667631-3667650 | None:intergenic | 20.0% |
| ! | TTTAAAGAGAGAGAAATCAA+AGG | + | chr5_3:3666970-3666989 | Msa0792430:CDS | 25.0% |
| ! | ATAGGTTGTATCAAATTTGA+TGG | - | chr5_3:3667103-3667122 | None:intergenic | 25.0% |
| ! | AACAACAATATCATTGTCTT+TGG | - | chr5_3:3667152-3667171 | None:intergenic | 25.0% |
| !! | ATAATTGAACCAAGGATTTT+TGG | + | chr5_3:3667352-3667371 | Msa0792430:CDS | 25.0% |
| !! | TAATTGAACCAAGGATTTTT+GGG | + | chr5_3:3667353-3667372 | Msa0792430:CDS | 25.0% |
| ! | GGACTTTCGTTAATAAAATA+AGG | + | chr5_3:3667479-3667498 | Msa0792430:CDS | 25.0% |
| !!! | GCTTTTGAAAGTTTTTGTAA+CGG | + | chr5_3:3667541-3667560 | Msa0792430:CDS | 25.0% |
| !!! | CTTTTGAAAGTTTTTGTAAC+GGG | + | chr5_3:3667542-3667561 | Msa0792430:CDS | 25.0% |
| !!! | TTTTGAAAGTTTTTGTAACG+GGG | + | chr5_3:3667543-3667562 | Msa0792430:CDS | 25.0% |
| ! | AGAAAAACTATCCAAAATTG+TGG | + | chr5_3:3667900-3667919 | Msa0792430:CDS | 25.0% |
| !! | TAACTTTTCATCCACAATTT+TGG | - | chr5_3:3667914-3667933 | None:intergenic | 25.0% |
| ! | TTTAAAGAGAGAGAAATCAA+AGG | + | chr5_3:3666970-3666989 | Msa0792430:CDS | 25.0% |
| ! | ATAGGTTGTATCAAATTTGA+TGG | - | chr5_3:3667103-3667122 | None:intergenic | 25.0% |
| ! | AACAACAATATCATTGTCTT+TGG | - | chr5_3:3667152-3667171 | None:intergenic | 25.0% |
| !! | ATAATTGAACCAAGGATTTT+TGG | + | chr5_3:3667352-3667371 | Msa0792430:CDS | 25.0% |
| !! | TAATTGAACCAAGGATTTTT+GGG | + | chr5_3:3667353-3667372 | Msa0792430:CDS | 25.0% |
| ! | GGACTTTCGTTAATAAAATA+AGG | + | chr5_3:3667479-3667498 | Msa0792430:CDS | 25.0% |
| !!! | GCTTTTGAAAGTTTTTGTAA+CGG | + | chr5_3:3667541-3667560 | Msa0792430:CDS | 25.0% |
| !!! | CTTTTGAAAGTTTTTGTAAC+GGG | + | chr5_3:3667542-3667561 | Msa0792430:CDS | 25.0% |
| !!! | TTTTGAAAGTTTTTGTAACG+GGG | + | chr5_3:3667543-3667562 | Msa0792430:CDS | 25.0% |
| ! | AGAAAAACTATCCAAAATTG+TGG | + | chr5_3:3667900-3667919 | Msa0792430:CDS | 25.0% |
| !! | TAACTTTTCATCCACAATTT+TGG | - | chr5_3:3667914-3667933 | None:intergenic | 25.0% |
| ! | AGGCACTAGTTTATGTATAA+TGG | - | chr5_3:3667275-3667294 | None:intergenic | 30.0% |
| !! | TATGACACAAAAGTATCGAA+TGG | - | chr5_3:3667457-3667476 | None:intergenic | 30.0% |
| ! | TCGATACTTTTGTGTCATAT+TGG | + | chr5_3:3667458-3667477 | Msa0792430:CDS | 30.0% |
| !! | TAACTCCATTTGGTTCATTT+TGG | + | chr5_3:3667566-3667585 | Msa0792430:CDS | 30.0% |
| !! | AACTCCATTTGGTTCATTTT+GGG | + | chr5_3:3667567-3667586 | Msa0792430:CDS | 30.0% |
| !! | TCATTTTGGGAGCATAATTT+AGG | + | chr5_3:3667580-3667599 | Msa0792430:CDS | 30.0% |
| ! | ACTTGAAAGAAAGTATGACT+AGG | + | chr5_3:3667605-3667624 | Msa0792430:CDS | 30.0% |
| AGTCTAGTGACATGAAAAAT+AGG | - | chr5_3:3667676-3667695 | None:intergenic | 30.0% | |
| ! | ACTAGACTTGCAACATTTTT+GGG | + | chr5_3:3667688-3667707 | Msa0792430:CDS | 30.0% |
| !!! | ATGTTGTTTTGAAACGATGA+AGG | + | chr5_3:3667768-3667787 | Msa0792430:CDS | 30.0% |
| !!! | TTTTGAAACGATGAAGGAAT+TGG | + | chr5_3:3667774-3667793 | Msa0792430:CDS | 30.0% |
| GAATTGGAGGTAAATAAATC+TGG | + | chr5_3:3667790-3667809 | Msa0792430:CDS | 30.0% | |
| GAACAAATTCTTCTTTCGAA+AGG | + | chr5_3:3667834-3667853 | Msa0792430:CDS | 30.0% | |
| ! | ATTTTTCCAATCTCCTACTT+TGG | - | chr5_3:3667860-3667879 | None:intergenic | 30.0% |
| AAATTACCTTTCCTCTTCAA+TGG | + | chr5_3:3667876-3667895 | Msa0792430:CDS | 30.0% | |
| ! | TAGTTTTTCTTCCATTGAAG+AGG | - | chr5_3:3667890-3667909 | None:intergenic | 30.0% |
| ATTGTGGATGAAAAGTTAAG+TGG | + | chr5_3:3667916-3667935 | Msa0792430:CDS | 30.0% | |
| ! | AGGCACTAGTTTATGTATAA+TGG | - | chr5_3:3667275-3667294 | None:intergenic | 30.0% |
| !! | TATGACACAAAAGTATCGAA+TGG | - | chr5_3:3667457-3667476 | None:intergenic | 30.0% |
| ! | TCGATACTTTTGTGTCATAT+TGG | + | chr5_3:3667458-3667477 | Msa0792430:CDS | 30.0% |
| !! | TAACTCCATTTGGTTCATTT+TGG | + | chr5_3:3667566-3667585 | Msa0792430:CDS | 30.0% |
| !! | AACTCCATTTGGTTCATTTT+GGG | + | chr5_3:3667567-3667586 | Msa0792430:CDS | 30.0% |
| !! | TCATTTTGGGAGCATAATTT+AGG | + | chr5_3:3667580-3667599 | Msa0792430:CDS | 30.0% |
| ! | ACTTGAAAGAAAGTATGACT+AGG | + | chr5_3:3667605-3667624 | Msa0792430:CDS | 30.0% |
| AGTCTAGTGACATGAAAAAT+AGG | - | chr5_3:3667676-3667695 | None:intergenic | 30.0% | |
| ! | ACTAGACTTGCAACATTTTT+GGG | + | chr5_3:3667688-3667707 | Msa0792430:CDS | 30.0% |
| !!! | ATGTTGTTTTGAAACGATGA+AGG | + | chr5_3:3667768-3667787 | Msa0792430:CDS | 30.0% |
| !!! | TTTTGAAACGATGAAGGAAT+TGG | + | chr5_3:3667774-3667793 | Msa0792430:CDS | 30.0% |
| GAATTGGAGGTAAATAAATC+TGG | + | chr5_3:3667790-3667809 | Msa0792430:CDS | 30.0% | |
| GAACAAATTCTTCTTTCGAA+AGG | + | chr5_3:3667834-3667853 | Msa0792430:CDS | 30.0% | |
| ! | ATTTTTCCAATCTCCTACTT+TGG | - | chr5_3:3667860-3667879 | None:intergenic | 30.0% |
| AAATTACCTTTCCTCTTCAA+TGG | + | chr5_3:3667876-3667895 | Msa0792430:CDS | 30.0% | |
| ! | TAGTTTTTCTTCCATTGAAG+AGG | - | chr5_3:3667890-3667909 | None:intergenic | 30.0% |
| ATTGTGGATGAAAAGTTAAG+TGG | + | chr5_3:3667916-3667935 | Msa0792430:CDS | 30.0% | |
| AAGAGAGAGAAATCAAAGGA+TGG | + | chr5_3:3666974-3666993 | Msa0792430:CDS | 35.0% | |
| !! | CATTTTCTTTAGGAAGTGAG+AGG | - | chr5_3:3667036-3667055 | None:intergenic | 35.0% |
| ! | AATGTCCACGCATTTTCTTT+AGG | - | chr5_3:3667046-3667065 | None:intergenic | 35.0% |
| TCGCAATCAATACTCATTTG+AGG | + | chr5_3:3667231-3667250 | Msa0792430:CDS | 35.0% | |
| CGCAATCAATACTCATTTGA+GGG | + | chr5_3:3667232-3667251 | Msa0792430:CDS | 35.0% | |
| TAAAGATGACGTTCAATGGA+AGG | - | chr5_3:3667295-3667314 | None:intergenic | 35.0% | |
| AGCATAAAGATGACGTTCAA+TGG | - | chr5_3:3667299-3667318 | None:intergenic | 35.0% | |
| ! | CACTAGACTTGCAACATTTT+TGG | + | chr5_3:3667687-3667706 | Msa0792430:CDS | 35.0% |
| TTTCTTCCATTGAAGAGGAA+AGG | - | chr5_3:3667885-3667904 | None:intergenic | 35.0% | |
| AAGAGAGAGAAATCAAAGGA+TGG | + | chr5_3:3666974-3666993 | Msa0792430:CDS | 35.0% | |
| !! | CATTTTCTTTAGGAAGTGAG+AGG | - | chr5_3:3667036-3667055 | None:intergenic | 35.0% |
| ! | AATGTCCACGCATTTTCTTT+AGG | - | chr5_3:3667046-3667065 | None:intergenic | 35.0% |
| TCGCAATCAATACTCATTTG+AGG | + | chr5_3:3667231-3667250 | Msa0792430:CDS | 35.0% | |
| CGCAATCAATACTCATTTGA+GGG | + | chr5_3:3667232-3667251 | Msa0792430:CDS | 35.0% | |
| TAAAGATGACGTTCAATGGA+AGG | - | chr5_3:3667295-3667314 | None:intergenic | 35.0% | |
| AGCATAAAGATGACGTTCAA+TGG | - | chr5_3:3667299-3667318 | None:intergenic | 35.0% | |
| ! | CACTAGACTTGCAACATTTT+TGG | + | chr5_3:3667687-3667706 | Msa0792430:CDS | 35.0% |
| TTTCTTCCATTGAAGAGGAA+AGG | - | chr5_3:3667885-3667904 | None:intergenic | 35.0% | |
| AAGCCAACAAGACAATAACC+AGG | + | chr5_3:3667006-3667025 | Msa0792430:CDS | 40.0% | |
| TCACCTGGTTATTGTCTTGT+TGG | - | chr5_3:3667012-3667031 | None:intergenic | 40.0% | |
| CACTTCCTAAAGAAAATGCG+TGG | + | chr5_3:3667038-3667057 | Msa0792430:CDS | 40.0% | |
| GTTGCAAGCTTACCAAAATC+AGG | + | chr5_3:3667169-3667188 | Msa0792430:CDS | 40.0% | |
| ATGTGAGTCCCAAAAATCCT+TGG | - | chr5_3:3667364-3667383 | None:intergenic | 40.0% | |
| GACTTGGCAAGTGAAGAAAA+TGG | - | chr5_3:3667388-3667407 | None:intergenic | 40.0% | |
| GGACTCTTCTTGAATTGACT+TGG | - | chr5_3:3667404-3667423 | None:intergenic | 40.0% | |
| TGCTCCCAAAATGAACCAAA+TGG | - | chr5_3:3667574-3667593 | None:intergenic | 40.0% | |
| CTATCCTTTCACTCAAGAAG+AGG | + | chr5_3:3667711-3667730 | Msa0792430:CDS | 40.0% | |
| GATTCCTCTTCTTGAGTGAA+AGG | - | chr5_3:3667718-3667737 | None:intergenic | 40.0% | |
| TGAAACGATGAAGGAATTGG+AGG | + | chr5_3:3667777-3667796 | Msa0792430:CDS | 40.0% | |
| TTCTTTCGAAAGGCCAAAGT+AGG | + | chr5_3:3667844-3667863 | Msa0792430:CDS | 40.0% | |
| AAGCCAACAAGACAATAACC+AGG | + | chr5_3:3667006-3667025 | Msa0792430:CDS | 40.0% | |
| TCACCTGGTTATTGTCTTGT+TGG | - | chr5_3:3667012-3667031 | None:intergenic | 40.0% | |
| CACTTCCTAAAGAAAATGCG+TGG | + | chr5_3:3667038-3667057 | Msa0792430:CDS | 40.0% | |
| GTTGCAAGCTTACCAAAATC+AGG | + | chr5_3:3667169-3667188 | Msa0792430:CDS | 40.0% | |
| ATGTGAGTCCCAAAAATCCT+TGG | - | chr5_3:3667364-3667383 | None:intergenic | 40.0% | |
| GACTTGGCAAGTGAAGAAAA+TGG | - | chr5_3:3667388-3667407 | None:intergenic | 40.0% | |
| GGACTCTTCTTGAATTGACT+TGG | - | chr5_3:3667404-3667423 | None:intergenic | 40.0% | |
| TGCTCCCAAAATGAACCAAA+TGG | - | chr5_3:3667574-3667593 | None:intergenic | 40.0% | |
| CTATCCTTTCACTCAAGAAG+AGG | + | chr5_3:3667711-3667730 | Msa0792430:CDS | 40.0% | |
| GATTCCTCTTCTTGAGTGAA+AGG | - | chr5_3:3667718-3667737 | None:intergenic | 40.0% | |
| TGAAACGATGAAGGAATTGG+AGG | + | chr5_3:3667777-3667796 | Msa0792430:CDS | 40.0% | |
| TTCTTTCGAAAGGCCAAAGT+AGG | + | chr5_3:3667844-3667863 | Msa0792430:CDS | 40.0% | |
| TACCAAAATCAGGCACCACT+TGG | + | chr5_3:3667179-3667198 | Msa0792430:CDS | 45.0% | |
| ! | AACCAAGTGGTGCCTGATTT+TGG | - | chr5_3:3667184-3667203 | None:intergenic | 45.0% |
| TGTAAGTGCTCTCAACCAAG+TGG | - | chr5_3:3667197-3667216 | None:intergenic | 45.0% | |
| ! | TGTAACGGGGTAACTCCATT+TGG | + | chr5_3:3667556-3667575 | Msa0792430:CDS | 45.0% |
| GAAAGGCCAAAGTAGGAGAT+TGG | + | chr5_3:3667851-3667870 | Msa0792430:CDS | 45.0% | |
| TGACTCTCTAAGTGGCTCAT+CGG | - | chr5_3:3667943-3667962 | None:intergenic | 45.0% | |
| TAGTAGGGTGACTCTCTAAG+TGG | - | chr5_3:3667951-3667970 | None:intergenic | 45.0% | |
| TACCAAAATCAGGCACCACT+TGG | + | chr5_3:3667179-3667198 | Msa0792430:CDS | 45.0% | |
| ! | AACCAAGTGGTGCCTGATTT+TGG | - | chr5_3:3667184-3667203 | None:intergenic | 45.0% |
| TGTAAGTGCTCTCAACCAAG+TGG | - | chr5_3:3667197-3667216 | None:intergenic | 45.0% | |
| ! | TGTAACGGGGTAACTCCATT+TGG | + | chr5_3:3667556-3667575 | Msa0792430:CDS | 45.0% |
| GAAAGGCCAAAGTAGGAGAT+TGG | + | chr5_3:3667851-3667870 | Msa0792430:CDS | 45.0% | |
| TGACTCTCTAAGTGGCTCAT+CGG | - | chr5_3:3667943-3667962 | None:intergenic | 45.0% | |
| TAGTAGGGTGACTCTCTAAG+TGG | - | chr5_3:3667951-3667970 | None:intergenic | 45.0% | |
| TAGGAAGTGAGAGGTTCACC+TGG | - | chr5_3:3667027-3667046 | None:intergenic | 50.0% | |
| TAGGAAGTGAGAGGTTCACC+TGG | - | chr5_3:3667027-3667046 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 3666956 | 3667984 | 3666956 | ID=Msa0792430;Name=Msa0792430 |
| chr5_3 | mRNA | 3666956 | 3667984 | 3666956 | ID=Msa0792430-mRNA-1;Parent=Msa0792430;Name=Msa0792430-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|-1|0|1|-1|1|1|0|342 |
| chr5_3 | exon | 3666956 | 3667984 | 3666956 | ID=Msa0792430-mRNA-1:exon:1581;Parent=Msa0792430-mRNA-1 |
| chr5_3 | CDS | 3666956 | 3667984 | 3666956 | ID=Msa0792430-mRNA-1:cds;Parent=Msa0792430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
