AlfalfaGEDB | Msa0793330

M. sativa cultivar zhongmu-4 / Msa0793330

KEGG: -
GO: -
PFAM: PF04765.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0793330	XP_039686649.1	97.643	594	12	1	1	594	1	592	0.0	1193

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0793330	sp\|Q9FZ97\|MUC70_ARATH	56.818	528	204	10	1	523	1	509	0.0	586

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0793330	G7IRA5	97.643	594	12	1	1	594	1	592	0.0	1193

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0183860	Msa0793330	0.800513	1.391145e-48	-8.615850e-47
Msa0295290	Msa0793330	0.946748	2.552323e-105	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0793330	MtrunA17_Chr2g0317511	97.643	594	12	1	1	594	1	592	0.0	1193
Msa0793330	MtrunA17_Chr4g0047251	55.835	557	214	9	39	591	1	529	0.0	598
Msa0793330	MtrunA17_Chr2g0282261	55.888	535	208	12	1	532	1	510	0.0	568
Msa0793330	MtrunA17_Chr8g0361841	46.815	314	153	8	227	533	161	467	7.37e-82	265
Msa0793330	MtrunA17_Chr8g0378731	38.968	349	196	8	181	524	114	450	7.26e-77	252
Msa0793330	MtrunA17_Chr1g0200501	46.557	305	152	7	227	523	395	696	1.77e-75	254
Msa0793330	MtrunA17_Chr1g0154411	39.735	302	160	8	227	522	175	460	4.01e-54	191
Msa0793330	MtrunA17_Chr2g0285981	34.520	281	169	6	227	501	117	388	1.74e-44	164

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0793330	AT1G53040.2	59.325	563	181	13	38	583	2	533	0.0	599
Msa0793330	AT1G53040.1	59.325	563	181	13	38	583	2	533	0.0	599
Msa0793330	AT1G53040.6	59.325	563	181	13	38	583	2	533	0.0	599
Msa0793330	AT1G28240.1	56.818	528	204	10	1	523	1	509	0.0	586
Msa0793330	AT1G53040.3	61.523	499	156	8	38	520	2	480	0.0	577
Msa0793330	AT1G53040.4	61.523	499	156	8	38	520	2	480	0.0	577
Msa0793330	AT1G53040.5	57.773	431	146	8	38	452	2	412	1.06e-154	451
Msa0793330	AT4G09630.2	39.862	434	222	14	108	523	270	682	2.62e-80	267
Msa0793330	AT4G09630.1	39.862	434	222	14	108	523	285	697	4.42e-80	267
Msa0793330	AT2G02910.2	40.369	379	189	12	169	534	105	459	7.97e-80	259

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Find 201 sgRNAs with CRISPR-Local

Find 448 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGATCTTCCTCTACTG+TGG	0.574720	5_3:+5326418	Msa0793330:CDS
AAAGGATCTTCCTCTACTGT+GGG	0.590284	5_3:+5326419	Msa0793330:CDS
AAATAATGGCAAAAGTTGAT+TGG	0.458296	5_3:+5329419	Msa0793330:CDS
AAATGGCAAAAGTAGCATTT+GGG	0.439586	5_3:-5328993	None:intergenic
AAATGTTTCTGGATTGTGAG+AGG	0.605555	5_3:+5329449	Msa0793330:CDS
AAATTATATGAAGATCGTAA+AGG	0.535453	5_3:-5326386	None:intergenic
AAATTGAACTTGGCGATCAA+TGG	0.458082	5_3:-5329091	None:intergenic
AAATTGAATATCGGATGTTG+GGG	0.626381	5_3:-5327878	None:intergenic
AACAATAGAAACTAAGTTAA+AGG	0.297917	5_3:+5326298	Msa0793330:CDS
AACTCCTCTCTTTCTCTTTG+GGG	0.506867	5_3:-5324883	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGTAAAAATGGAAACTTGAT+CGG	-	chr5_3:5324478-5324497	None:intergenic	30.0%
TTGAAATCAAATGTAGCTTC+TGG	+	chr5_3:5324550-5324569	Msa0793330:five_prime_UTR	30.0%
TGAAATCAAATGTAGCTTCT+GGG	+	chr5_3:5324551-5324570	Msa0793330:five_prime_UTR	30.0%
GAAAAGGAGATGAAATTGAA+AGG	+	chr5_3:5324732-5324751	Msa0793330:five_prime_UTR	30.0%
TTGTATATTTGTCGTCATCT+TGG	+	chr5_3:5324908-5324927	Msa0793330:CDS	30.0%
TATAGCCACTATATGTAGTA+AGG	+	chr5_3:5325278-5325297	Msa0793330:intron	30.0%
GACGAACATAAAACATCTAT+GGG	-	chr5_3:5325788-5325807	None:intergenic	30.0%
AAACCAATCATATCTCATCA+TGG	-	chr5_3:5326038-5326057	None:intergenic	30.0%
TCGTGTATCTTCAATTTCAT+TGG	-	chr5_3:5326237-5326256	None:intergenic	30.0%
ATCAACGCCTATAACTTTAT+AGG	-	chr5_3:5326276-5326295	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	5324276	5330603	5324276	ID=Msa0793330;Name=Msa0793330
chr5_3	mRNA	5324276	5330603	5324276	ID=Msa0793330-mRNA-1;Parent=Msa0793330;Name=Msa0793330-mRNA-1;_AED=0.08;_eAED=0.08;_QI=485\|1\|1\|1\|0.88\|0.8\|10\|214\|594
chr5_3	exon	5324276	5325010	5324276	ID=Msa0793330-mRNA-1:exon:2039;Parent=Msa0793330-mRNA-1
chr5_3	exon	5326222	5326509	5326222	ID=Msa0793330-mRNA-1:exon:2040;Parent=Msa0793330-mRNA-1
chr5_3	exon	5326685	5326898	5326685	ID=Msa0793330-mRNA-1:exon:2041;Parent=Msa0793330-mRNA-1
chr5_3	exon	5327268	5327377	5327268	ID=Msa0793330-mRNA-1:exon:2042;Parent=Msa0793330-mRNA-1
chr5_3	exon	5327461	5327660	5327461	ID=Msa0793330-mRNA-1:exon:2043;Parent=Msa0793330-mRNA-1
chr5_3	exon	5327849	5327952	5327849	ID=Msa0793330-mRNA-1:exon:2044;Parent=Msa0793330-mRNA-1
chr5_3	exon	5328981	5329171	5328981	ID=Msa0793330-mRNA-1:exon:2045;Parent=Msa0793330-mRNA-1
chr5_3	exon	5329290	5329489	5329290	ID=Msa0793330-mRNA-1:exon:2046;Parent=Msa0793330-mRNA-1
chr5_3	exon	5330126	5330491	5330126	ID=Msa0793330-mRNA-1:exon:2047;Parent=Msa0793330-mRNA-1
chr5_3	exon	5330528	5330603	5330528	ID=Msa0793330-mRNA-1:exon:2048;Parent=Msa0793330-mRNA-1
chr5_3	five_prime_UTR	5324276	5324760	5324276	ID=Msa0793330-mRNA-1:five_prime_utr;Parent=Msa0793330-mRNA-1
chr5_3	CDS	5324761	5325010	5324761	ID=Msa0793330-mRNA-1:cds;Parent=Msa0793330-mRNA-1
chr5_3	CDS	5326222	5326509	5326222	ID=Msa0793330-mRNA-1:cds;Parent=Msa0793330-mRNA-1
chr5_3	CDS	5326685	5326898	5326685	ID=Msa0793330-mRNA-1:cds;Parent=Msa0793330-mRNA-1
chr5_3	CDS	5327268	5327377	5327268	ID=Msa0793330-mRNA-1:cds;Parent=Msa0793330-mRNA-1
chr5_3	CDS	5327461	5327660	5327461	ID=Msa0793330-mRNA-1:cds;Parent=Msa0793330-mRNA-1
chr5_3	CDS	5327849	5327952	5327849	ID=Msa0793330-mRNA-1:cds;Parent=Msa0793330-mRNA-1
chr5_3	CDS	5328981	5329171	5328981	ID=Msa0793330-mRNA-1:cds;Parent=Msa0793330-mRNA-1
chr5_3	CDS	5329290	5329489	5329290	ID=Msa0793330-mRNA-1:cds;Parent=Msa0793330-mRNA-1
chr5_3	CDS	5330126	5330353	5330126	ID=Msa0793330-mRNA-1:cds;Parent=Msa0793330-mRNA-1
chr5_3	three_prime_UTR	5330354	5330491	5330354	ID=Msa0793330-mRNA-1:three_prime_utr;Parent=Msa0793330-mRNA-1
chr5_3	three_prime_UTR	5330528	5330603	5330528	ID=Msa0793330-mRNA-1:three_prime_utr;Parent=Msa0793330-mRNA-1

Gene Sequence

>Msa0793330

ATGACTGGAGTGTCATTGGGTCTACGAACAGGTAGCTATGGTTCTCTGCAGTTGATTCAAAACGGTAACGTTTCGCAGGTTCCGGTGCTTGTTCGTAGAGCTTCGAAGACGCTCCTTTATAACCCCAAAGAGAAAGAGAGGAGTTGTTTGTATATTTGTCGTCATCTTGGTCGTGGCAAAGTTGCTATGCTTCTCATGCTTCTTTGTGGCCTTTTCATTTTTGTATTTGGCTGCTTTACACTTTACAAAGGTGGAAACATCACCAATGAAATTGAAGATACACGATCTTATGCCCTTAGTACCTATAAAGTTATAGGCGTTGATGGAACAATAGAAACTAAGTTAAAGGATAGTAGTTCTTCTACGTCGTTGACAAGTAGGCATAAAAATTCATTCAGGGAACATCCTGTTTCCCCTTTACGATCTTCATATAATTTGAAAGGAAAAAAAGGATCTTCCTCTACTGTGGGACATCAGTGTGACCATTTTGCATTTCCTCCTCCTCCACCGGCTGATAGAAGACGTACCGGACCACGCCCATGTCCTGTGTGCTATATTCCTGTGGAGCAAGCTATAGCTAGTATGCCAAGTTCCCCATCAGAGTCTCCTGTACTTCGCACTCTCACATATGCGCATAATGAAAATATGTTTCCAAGTGAACCAGAGGGCGGCTCTGATTTTGGTGGATACCCTCCTCTGGAAGAAAGGGACGCTTCTTTTGATATAAAAGAGACCATGAAAGTGCATTGTGGATTTGTAAAAGGAAGCAGACCTGGGCGCCAGACTGGATTTGATTTTGATGAGGAAGACCTCTTAGAGTTGGATCAGTACCATGATATCATTGTTGCATCTGCCATATTTGGAAACTATGATGTAATACAGCAGCCCAGGAACATCAGTAAACAAGCAAGGAAGAACATTCCTTTCTATATGTTCATTGATGAAGAGACAGAAATGTATATGAGAAATGCCAGTATTTTGGATAGCAGGAGGAGAGTTGGATTATGGAGAATCATTGTTGTCCGGAATATTCCATACGCTGATTCTAGGCGTAATGGAAAGATTCCAAAACTTCTTTTGCACAGAATCTTCCCCAACATCCGATATTCAATTTGGATTGATGGGAAGCTTGAGCTCGTTAAAGACCCATATCAAATTCTTGAAAGGTTCTTGTGGCGCCCAAATGCTACTTTTGCCATTTCAAGACACTATAGACGCTTTGATGTCTTTGTCGAGGCAGAGGCTAATAAAGTTGCTGGAAAATATGAGAATGCTTCCATTGATCGCCAAGTTCAATTTTATCAATACCACGATGGTTTAACTCATTATTCCAGGGCTAAGCTTCCTATAACTAGTGATGTGCCTGAAGGTTGTGTTATCATTAGAGAACACATTCCAATTACAAATCTGTTTACCTGCTTATGGTTCAATGAAGTTGACCGCTTTACTTCTAGAGATCAGTTAAGCTTTTCCACGGTAAGAGACAAAATAATGGCAAAAGTTGATTGGAGTATCAAAATGTTTCTGGATTGTGAGAGGCGTAACTTTGTAATACAGGCGTACCATAGAGACGTATTGGAGAACATGCCTCCTCCTCCTCCTCCTCGTCCTCGTCCTCGTCCAGTTGTTGTAATTCGGCGTCCTCGTCTTCCACCTGTTCCCTATACTACTAACAAGCCTCTGGTGAAGAAGAATCCTAGGCGCGGGAGAGGAGATAGGAGATCAGGTTCTAAGCGTCATCGTAAAATAGTAGACAATGTTGTTATGAACCAAATTTTATTTTAG

Protein sequence

>Msa0793330

MTGVSLGLRTGSYGSLQLIQNGNVSQVPVLVRRASKTLLYNPKEKERSCLYICRHLGRGKVAMLLMLLCGLFIFVFGCFTLYKGGNITNEIEDTRSYALSTYKVIGVDGTIETKLKDSSSSTSLTSRHKNSFREHPVSPLRSSYNLKGKKGSSSTVGHQCDHFAFPPPPPADRRRTGPRPCPVCYIPVEQAIASMPSSPSESPVLRTLTYAHNENMFPSEPEGGSDFGGYPPLEERDASFDIKETMKVHCGFVKGSRPGRQTGFDFDEEDLLELDQYHDIIVASAIFGNYDVIQQPRNISKQARKNIPFYMFIDEETEMYMRNASILDSRRRVGLWRIIVVRNIPYADSRRNGKIPKLLLHRIFPNIRYSIWIDGKLELVKDPYQILERFLWRPNATFAISRHYRRFDVFVEAEANKVAGKYENASIDRQVQFYQYHDGLTHYSRAKLPITSDVPEGCVIIREHIPITNLFTCLWFNEVDRFTSRDQLSFSTVRDKIMAKVDWSIKMFLDCERRNFVIQAYHRDVLENMPPPPPPRPRPRPVVVIRRPRLPPVPYTTNKPLVKKNPRRGRGDRRSGSKRHRKIVDNVVMNQILF*