Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0793330 | XP_039686649.1 | 97.643 | 594 | 12 | 1 | 1 | 594 | 1 | 592 | 0.0 | 1193 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0793330 | sp|Q9FZ97|MUC70_ARATH | 56.818 | 528 | 204 | 10 | 1 | 523 | 1 | 509 | 0.0 | 586 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0793330 | G7IRA5 | 97.643 | 594 | 12 | 1 | 1 | 594 | 1 | 592 | 0.0 | 1193 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0183860 | Msa0793330 | 0.800513 | 1.391145e-48 | -8.615850e-47 |
Msa0295290 | Msa0793330 | 0.946748 | 2.552323e-105 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0793330 | MtrunA17_Chr2g0317511 | 97.643 | 594 | 12 | 1 | 1 | 594 | 1 | 592 | 0.0 | 1193 |
Msa0793330 | MtrunA17_Chr4g0047251 | 55.835 | 557 | 214 | 9 | 39 | 591 | 1 | 529 | 0.0 | 598 |
Msa0793330 | MtrunA17_Chr2g0282261 | 55.888 | 535 | 208 | 12 | 1 | 532 | 1 | 510 | 0.0 | 568 |
Msa0793330 | MtrunA17_Chr8g0361841 | 46.815 | 314 | 153 | 8 | 227 | 533 | 161 | 467 | 7.37e-82 | 265 |
Msa0793330 | MtrunA17_Chr8g0378731 | 38.968 | 349 | 196 | 8 | 181 | 524 | 114 | 450 | 7.26e-77 | 252 |
Msa0793330 | MtrunA17_Chr1g0200501 | 46.557 | 305 | 152 | 7 | 227 | 523 | 395 | 696 | 1.77e-75 | 254 |
Msa0793330 | MtrunA17_Chr1g0154411 | 39.735 | 302 | 160 | 8 | 227 | 522 | 175 | 460 | 4.01e-54 | 191 |
Msa0793330 | MtrunA17_Chr2g0285981 | 34.520 | 281 | 169 | 6 | 227 | 501 | 117 | 388 | 1.74e-44 | 164 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0793330 | AT1G53040.2 | 59.325 | 563 | 181 | 13 | 38 | 583 | 2 | 533 | 0.0 | 599 |
Msa0793330 | AT1G53040.1 | 59.325 | 563 | 181 | 13 | 38 | 583 | 2 | 533 | 0.0 | 599 |
Msa0793330 | AT1G53040.6 | 59.325 | 563 | 181 | 13 | 38 | 583 | 2 | 533 | 0.0 | 599 |
Msa0793330 | AT1G28240.1 | 56.818 | 528 | 204 | 10 | 1 | 523 | 1 | 509 | 0.0 | 586 |
Msa0793330 | AT1G53040.3 | 61.523 | 499 | 156 | 8 | 38 | 520 | 2 | 480 | 0.0 | 577 |
Msa0793330 | AT1G53040.4 | 61.523 | 499 | 156 | 8 | 38 | 520 | 2 | 480 | 0.0 | 577 |
Msa0793330 | AT1G53040.5 | 57.773 | 431 | 146 | 8 | 38 | 452 | 2 | 412 | 1.06e-154 | 451 |
Msa0793330 | AT4G09630.2 | 39.862 | 434 | 222 | 14 | 108 | 523 | 270 | 682 | 2.62e-80 | 267 |
Msa0793330 | AT4G09630.1 | 39.862 | 434 | 222 | 14 | 108 | 523 | 285 | 697 | 4.42e-80 | 267 |
Msa0793330 | AT2G02910.2 | 40.369 | 379 | 189 | 12 | 169 | 534 | 105 | 459 | 7.97e-80 | 259 |
Msa0793330 | AT2G02910.1 | 40.369 | 379 | 189 | 12 | 169 | 534 | 105 | 459 | 7.97e-80 | 259 |
Msa0793330 | AT1G34550.2 | 46.580 | 307 | 149 | 8 | 227 | 523 | 327 | 628 | 1.92e-78 | 261 |
Msa0793330 | AT1G34550.1 | 46.580 | 307 | 149 | 8 | 227 | 523 | 421 | 722 | 1.01e-77 | 261 |
Msa0793330 | AT4G38500.1 | 41.349 | 341 | 180 | 10 | 178 | 512 | 107 | 433 | 1.88e-71 | 238 |
Msa0793330 | AT5G42660.1 | 38.926 | 298 | 168 | 7 | 227 | 522 | 168 | 453 | 5.77e-60 | 207 |
Msa0793330 | AT5G46220.1 | 36.396 | 283 | 162 | 8 | 227 | 501 | 118 | 390 | 1.19e-43 | 162 |
Find 201 sgRNAs with CRISPR-Local
Find 448 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGGAGTATCAAAATGTTTC+TGG | 0.131575 | 5_3:+5329438 | Msa0793330:CDS |
CCAACATCCGATATTCAATT+TGG | 0.161998 | 5_3:+5327880 | Msa0793330:CDS |
TATGAGAAATGCCAGTATTT+TGG | 0.170087 | 5_3:+5327558 | Msa0793330:CDS |
CAACTCCTCTCTTTCTCTTT+GGG | 0.171333 | 5_3:-5324884 | None:intergenic |
ATCAAGACTAAAATAAAATT+TGG | 0.222129 | 5_3:-5330338 | None:intergenic |
GCAGGAGGAGAGTTGGATTA+TGG | 0.230597 | 5_3:+5327584 | Msa0793330:CDS |
ACAACTCCTCTCTTTCTCTT+TGG | 0.232114 | 5_3:-5324885 | None:intergenic |
CCAGAGGGCGGCTCTGATTT+TGG | 0.239298 | 5_3:+5326807 | Msa0793330:CDS |
CAAATCTGTTTACCTGCTTA+TGG | 0.239991 | 5_3:+5329335 | Msa0793330:CDS |
ATCAACGCCTATAACTTTAT+AGG | 0.256052 | 5_3:-5326273 | None:intergenic |
TACCTTTCAAGAATTTGATA+TGG | 0.259862 | 5_3:-5327933 | None:intergenic |
CTTAGTACCTATAAAGTTAT+AGG | 0.264807 | 5_3:+5326266 | Msa0793330:CDS |
ATTGTTGCATCTGCCATATT+TGG | 0.266284 | 5_3:+5327356 | Msa0793330:CDS |
ATTCTGTGCAAAAGAAGTTT+TGG | 0.269371 | 5_3:-5327852 | None:intergenic |
ATTTACAATTAAAACATAAA+AGG | 0.286362 | 5_3:-5330484 | None:intergenic |
ATATTCCATACGCTGATTCT+AGG | 0.289829 | 5_3:+5327626 | Msa0793330:CDS |
TTGTTCTTACCACTAGTTAT+AGG | 0.290716 | 5_3:-5329159 | None:intergenic |
ACTCTTGACAGATTTGTAAA+AGG | 0.291042 | 5_3:+5327257 | Msa0793330:intron |
AACAATAGAAACTAAGTTAA+AGG | 0.297917 | 5_3:+5326298 | Msa0793330:CDS |
GTCATAAATTGTACCAAATA+TGG | 0.301494 | 5_3:-5327369 | None:intergenic |
CAGAGGCTTGTTAGTAGTAT+AGG | 0.308587 | 5_3:-5330229 | None:intergenic |
TGCTTGTTTACTGATGTTCC+TGG | 0.308633 | 5_3:-5327485 | None:intergenic |
TGTTACAGTGGTGGGTTTGA+TGG | 0.316135 | 5_3:+5324708 | Msa0793330:five_prime_UTR |
CAGGTAAACAGATTTGTAAT+TGG | 0.326045 | 5_3:-5329328 | None:intergenic |
CGATATTCAATTTGGATTGA+TGG | 0.327205 | 5_3:+5327888 | Msa0793330:CDS |
CTTTCTCTTTGGGGTTATAA+AGG | 0.333461 | 5_3:-5324874 | None:intergenic |
GAAATGGCAAAAGTAGCATT+TGG | 0.334302 | 5_3:-5328994 | None:intergenic |
TTGAAATCAAATGTAGCTTC+TGG | 0.336024 | 5_3:+5324550 | Msa0793330:five_prime_UTR |
GAATCAGAGAATTGGGGAAT+TGG | 0.340394 | 5_3:-5324363 | None:intergenic |
CGGTAACGTTTCGCAGGTTC+CGG | 0.346495 | 5_3:+5324823 | Msa0793330:CDS |
GGGAAACCCACGAATGATTT+CGG | 0.350801 | 5_3:-5324517 | None:intergenic |
ATGGTTTAACTCATTATTCC+AGG | 0.351362 | 5_3:+5329127 | Msa0793330:CDS |
CAAATTGAATATCGGATGTT+GGG | 0.357092 | 5_3:-5327879 | None:intergenic |
AATCGGAGAATCAGAGAATT+GGG | 0.364490 | 5_3:-5324370 | None:intergenic |
CGAGGACGAGGAGGAGGAGG+AGG | 0.370034 | 5_3:-5330159 | None:intergenic |
GAATCGGAGAATCAGAGAAT+TGG | 0.373549 | 5_3:-5324371 | None:intergenic |
CTCGTCCAGTTGTTGTAATT+CGG | 0.377263 | 5_3:+5330184 | Msa0793330:CDS |
AATCAGAGAATTGGGGAATT+GGG | 0.381452 | 5_3:-5324362 | None:intergenic |
TAACCCACAATGCACTTTCA+TGG | 0.381800 | 5_3:-5326880 | None:intergenic |
AGAGATGACTGGAGTGTCAT+TGG | 0.383636 | 5_3:+5324757 | Msa0793330:exon |
AGCAGACCTGGGCGCCAGAC+TGG | 0.385517 | 5_3:+5327281 | Msa0793330:CDS |
ACCTTTCAAGAATTTGATAT+GGG | 0.390461 | 5_3:-5327932 | None:intergenic |
AATTATATGAAGATCGTAAA+GGG | 0.390591 | 5_3:-5326385 | None:intergenic |
TCGTGTATCTTCAATTTCAT+TGG | 0.390782 | 5_3:-5326234 | None:intergenic |
GCAGAGGCTAATAAAGTTGC+TGG | 0.394494 | 5_3:+5329051 | Msa0793330:CDS |
CATCAATCCAAATTGAATAT+CGG | 0.397863 | 5_3:-5327887 | None:intergenic |
GAAGATCGTAAAGGGGAAAC+AGG | 0.398793 | 5_3:-5326377 | None:intergenic |
ATGCTTCTCATGCTTCTTTG+TGG | 0.400181 | 5_3:+5324947 | Msa0793330:CDS |
TGTTCTCCAATACGTCTCTA+TGG | 0.400680 | 5_3:-5330131 | None:intergenic |
TTGTATATTTGTCGTCATCT+TGG | 0.402404 | 5_3:+5324908 | Msa0793330:CDS |
GGACGCCGAATTACAACAAC+TGG | 0.408307 | 5_3:-5330189 | None:intergenic |
AGTGGGTCCCACTGAGACTC+CGG | 0.417933 | 5_3:-5324443 | None:intergenic |
AGAGGCTTGTTAGTAGTATA+GGG | 0.418244 | 5_3:-5330228 | None:intergenic |
TATAAAGTTATAGGCGTTGA+TGG | 0.419422 | 5_3:+5326275 | Msa0793330:CDS |
TGCATTTCCTCCTCCTCCAC+CGG | 0.419731 | 5_3:+5326460 | Msa0793330:CDS |
TGAAATCAAATGTAGCTTCT+GGG | 0.422798 | 5_3:+5324551 | Msa0793330:five_prime_UTR |
AATCAGCGTATGGAATATTC+CGG | 0.426989 | 5_3:-5327621 | None:intergenic |
ACAAAACTTACGGCGTGGTC+CGG | 0.429802 | 5_3:-5326498 | None:intergenic |
GAGGCGTAACTTTGTAATAC+AGG | 0.430563 | 5_3:+5329468 | Msa0793330:CDS |
CACGGTAAGAGACAAAATAA+TGG | 0.431368 | 5_3:+5329405 | Msa0793330:CDS |
GGACGAGGACGAGGAGGAGG+AGG | 0.433669 | 5_3:-5330162 | None:intergenic |
GGAGACTCTGATGGGGAACT+TGG | 0.434048 | 5_3:-5326732 | None:intergenic |
AAATGGCAAAAGTAGCATTT+GGG | 0.439586 | 5_3:-5328993 | None:intergenic |
CTATAACTTTATAGGTACTA+AGG | 0.440362 | 5_3:-5326265 | None:intergenic |
GGGAATTGGGAGATGGAAGA+TGG | 0.441058 | 5_3:-5324349 | None:intergenic |
CCTCCTGCTATCCAAAATAC+TGG | 0.441277 | 5_3:-5327569 | None:intergenic |
CTAGGCGCGGGAGAGGAGAT+AGG | 0.442545 | 5_3:+5330265 | Msa0793330:CDS |
TCCCACTGAGACTCCGGGGA+AGG | 0.446054 | 5_3:-5324437 | None:intergenic |
TTGGATAGCAGGAGGAGAGT+TGG | 0.453109 | 5_3:+5327577 | Msa0793330:CDS |
CGAGGACGAGGACGAGGAGG+AGG | 0.453236 | 5_3:-5330165 | None:intergenic |
CGATCTTCATATAATTTGAA+AGG | 0.456833 | 5_3:+5326392 | Msa0793330:CDS |
GCGTCTATAGTGTCTTGAAA+TGG | 0.457326 | 5_3:-5329010 | None:intergenic |
AAATTGAACTTGGCGATCAA+TGG | 0.458082 | 5_3:-5329091 | None:intergenic |
AAATAATGGCAAAAGTTGAT+TGG | 0.458296 | 5_3:+5329419 | Msa0793330:CDS |
CTAATGATAACACAACCTTC+AGG | 0.460865 | 5_3:-5329295 | None:intergenic |
CTTCTACGTCGTTGACAAGT+AGG | 0.463711 | 5_3:+5326330 | Msa0793330:CDS |
GATACCCTCCTCTGGAAGAA+AGG | 0.465155 | 5_3:+5326832 | Msa0793330:CDS |
TATGGAGAATCATTGTTGTC+CGG | 0.466157 | 5_3:+5327602 | Msa0793330:CDS |
GGCGTACCATAGAGACGTAT+TGG | 0.468562 | 5_3:+5330125 | Msa0793330:intron |
GTGTCATTGGGTCTACGAAC+AGG | 0.469533 | 5_3:+5324770 | Msa0793330:CDS |
CTAGCTATAGCTTGCTCCAC+AGG | 0.472659 | 5_3:-5326705 | None:intergenic |
TTGATTGTTGTTACAGTGGT+GGG | 0.472782 | 5_3:+5324700 | Msa0793330:five_prime_UTR |
GGGAGAGGAGATAGGAGATC+AGG | 0.476344 | 5_3:+5330273 | Msa0793330:CDS |
GAGGAGGAGGAAATGCAAAA+TGG | 0.477057 | 5_3:-5326454 | None:intergenic |
CCAAATTGAATATCGGATGT+TGG | 0.483520 | 5_3:-5327880 | None:intergenic |
ATTTCCTCTTCACCCTTCCC+CGG | 0.486772 | 5_3:+5324424 | Msa0793330:five_prime_UTR |
CTTCTATCAGCCGGTGGAGG+AGG | 0.487564 | 5_3:-5326470 | None:intergenic |
CTATCTCCTCTCCCGCGCCT+AGG | 0.488221 | 5_3:-5330264 | None:intergenic |
GCTTGTTTACTGATGTTCCT+GGG | 0.488794 | 5_3:-5327484 | None:intergenic |
AAGAATCCTAGGCGCGGGAG+AGG | 0.488826 | 5_3:+5330258 | Msa0793330:CDS |
GAGCCGCCCTCTGGTTCACT+TGG | 0.488920 | 5_3:-5326798 | None:intergenic |
GGATTGAGGTGTAGCGTGAA+TGG | 0.489165 | 5_3:-5324316 | None:intergenic |
CTATCAGCCGGTGGAGGAGG+AGG | 0.489293 | 5_3:-5326467 | None:intergenic |
GTGGGTCCCACTGAGACTCC+GGG | 0.490349 | 5_3:-5324442 | None:intergenic |
TGAATGGAGGGAAGAGAGAA+TGG | 0.492726 | 5_3:-5324300 | None:intergenic |
TACGCTGATTCTAGGCGTAA+TGG | 0.493420 | 5_3:+5327634 | Msa0793330:CDS |
AGACCATGAAAGTGCATTGT+GGG | 0.494240 | 5_3:+5326877 | Msa0793330:CDS |
GATATTCAATTTGGATTGAT+GGG | 0.495126 | 5_3:+5327889 | Msa0793330:CDS |
CATCAAAATCAAATCCAGTC+TGG | 0.495263 | 5_3:-5327295 | None:intergenic |
TGATGTCTTTGTCGAGGCAG+AGG | 0.497324 | 5_3:+5329035 | Msa0793330:CDS |
GAAATCAATGAACGGAATCT+CGG | 0.498803 | 5_3:-5324406 | None:intergenic |
GAGATGACTGGAGTGTCATT+GGG | 0.500498 | 5_3:+5324758 | Msa0793330:exon |
TTGTTAGTAGTATAGGGAAC+AGG | 0.504095 | 5_3:-5330222 | None:intergenic |
AACTCCTCTCTTTCTCTTTG+GGG | 0.506867 | 5_3:-5324883 | None:intergenic |
CCCACTGAGACTCCGGGGAA+GGG | 0.507237 | 5_3:-5324436 | None:intergenic |
TTTGTAAAAGGAAGCAGACC+TGG | 0.508151 | 5_3:+5327269 | Msa0793330:CDS |
TATGTGAGAGTGCGAAGTAC+AGG | 0.510947 | 5_3:-5326753 | None:intergenic |
CCCTTCCCCGGAGTCTCAGT+GGG | 0.512104 | 5_3:+5324436 | Msa0793330:five_prime_UTR |
CAGATGCAACAATGATATCA+TGG | 0.513495 | 5_3:-5327346 | None:intergenic |
TGAGGAAGACCTCTTAGAGT+TGG | 0.514183 | 5_3:+5327316 | Msa0793330:CDS |
ACAACAACTGGACGAGGACG+AGG | 0.517613 | 5_3:-5330177 | None:intergenic |
TGGTGGGTTTGATGGTGAAA+AGG | 0.518260 | 5_3:+5324716 | Msa0793330:five_prime_UTR |
CCAAAATCAGAGCCGCCCTC+TGG | 0.518922 | 5_3:-5326807 | None:intergenic |
GGTATTGATAAAATTGAACT+TGG | 0.519689 | 5_3:-5329101 | None:intergenic |
TGGAAACTTGATCGGAAAAG+AGG | 0.521482 | 5_3:-5324467 | None:intergenic |
TCAAATCCAGTCTGGCGCCC+AGG | 0.522524 | 5_3:-5327287 | None:intergenic |
ATTGAAAGGAGAGAGATGAC+TGG | 0.525842 | 5_3:+5324746 | Msa0793330:exon |
TTATATCATCCAGGTTCTTG+TGG | 0.528214 | 5_3:+5328968 | Msa0793330:intron |
CTATACTACTAACAAGCCTC+TGG | 0.528643 | 5_3:+5330230 | Msa0793330:CDS |
TTTGATTTCAAGCGATGAGA+AGG | 0.529884 | 5_3:-5324538 | None:intergenic |
TTTGATTGTTGTTACAGTGG+TGG | 0.530497 | 5_3:+5324699 | Msa0793330:five_prime_UTR |
CTTGATCGGAAAAGAGGAAG+TGG | 0.531481 | 5_3:-5324461 | None:intergenic |
AAATTATATGAAGATCGTAA+AGG | 0.535453 | 5_3:-5326386 | None:intergenic |
ATTTGTCGTCATCTTGGTCG+TGG | 0.536035 | 5_3:+5324914 | Msa0793330:CDS |
CGTCTTCTATCAGCCGGTGG+AGG | 0.539441 | 5_3:-5326473 | None:intergenic |
CTAGGATTCTTCTTCACCAG+AGG | 0.540636 | 5_3:-5330246 | None:intergenic |
AGAATTGGGGAATTGGGAGA+TGG | 0.543927 | 5_3:-5324356 | None:intergenic |
ATGGAGATGGTGATGGATTG+AGG | 0.544586 | 5_3:-5324330 | None:intergenic |
ACTGGACGAGGACGAGGACG+AGG | 0.546361 | 5_3:-5330171 | None:intergenic |
CGAAGTACAGGAGACTCTGA+TGG | 0.547259 | 5_3:-5326741 | None:intergenic |
ATGAACGGAATCTCGGCGGT+TGG | 0.549569 | 5_3:-5324399 | None:intergenic |
TCATCAATGAACATATAGAA+AGG | 0.552097 | 5_3:-5327520 | None:intergenic |
CTCTGGTGAAGAAGAATCCT+AGG | 0.552954 | 5_3:+5330247 | Msa0793330:CDS |
GAAATCAAATGTAGCTTCTG+GGG | 0.554318 | 5_3:+5324552 | Msa0793330:five_prime_UTR |
TACAATTAAAACATAAAAGG+AGG | 0.554568 | 5_3:-5330481 | None:intergenic |
ACCCATATCAAATTCTTGAA+AGG | 0.556489 | 5_3:+5327931 | Msa0793330:CDS |
GAAGTACAGGAGACTCTGAT+GGG | 0.558730 | 5_3:-5326740 | None:intergenic |
GGTACTGATCCAACTCTAAG+AGG | 0.559165 | 5_3:-5327325 | None:intergenic |
ATGGAAGATGGAGATGGTGA+TGG | 0.559399 | 5_3:-5324337 | None:intergenic |
GCCTCTGCAGATGTGCCTGA+AGG | 0.559588 | 5_3:+5329280 | Msa0793330:intron |
AGTTATAGGAAGCTTAGCCC+TGG | 0.559911 | 5_3:-5329145 | None:intergenic |
TCAAAACGGTAACGTTTCGC+AGG | 0.562363 | 5_3:+5324817 | Msa0793330:CDS |
AACTTCATTGAACCATAAGC+AGG | 0.563277 | 5_3:-5329347 | None:intergenic |
ATACCCTCCTCTGGAAGAAA+GGG | 0.563454 | 5_3:+5326833 | Msa0793330:CDS |
TCTCTGCAGTTGATTCAAAA+CGG | 0.563566 | 5_3:+5324803 | Msa0793330:CDS |
GAAAAGGAGATGAAATTGAA+AGG | 0.566132 | 5_3:+5324732 | Msa0793330:five_prime_UTR |
CCGGTACGTCTTCTATCAGC+CGG | 0.566719 | 5_3:-5326479 | None:intergenic |
ACCCTTCCCCGGAGTCTCAG+TGG | 0.569276 | 5_3:+5324435 | Msa0793330:five_prime_UTR |
TGGTTTAACTCATTATTCCA+GGG | 0.573563 | 5_3:+5329128 | Msa0793330:CDS |
AAAAGGATCTTCCTCTACTG+TGG | 0.574720 | 5_3:+5326418 | Msa0793330:CDS |
TCAAAATCCGAAATCATTCG+TGG | 0.576868 | 5_3:+5324510 | Msa0793330:five_prime_UTR |
ATAACCCCAAAGAGAAAGAG+AGG | 0.578050 | 5_3:+5324879 | Msa0793330:CDS |
TTGATTTCAAGCGATGAGAA+GGG | 0.579782 | 5_3:-5324537 | None:intergenic |
TCGGCGGTTGGAGTTCGAAT+CGG | 0.580103 | 5_3:-5324387 | None:intergenic |
AGATTTGATTGTTGTTACAG+TGG | 0.581260 | 5_3:+5324696 | Msa0793330:five_prime_UTR |
GGTCTACGAACAGGTAGCTA+TGG | 0.582952 | 5_3:+5324779 | Msa0793330:CDS |
TCCTGTGTGCTATATTCCTG+TGG | 0.583338 | 5_3:+5326689 | Msa0793330:CDS |
TGAGGTGTAGCGTGAATGGA+GGG | 0.584497 | 5_3:-5324312 | None:intergenic |
ATGATGTAATACAGCAGCCC+AGG | 0.585632 | 5_3:+5327467 | Msa0793330:CDS |
TGAAGAAGAATCCTAGGCGC+GGG | 0.587189 | 5_3:+5330253 | Msa0793330:CDS |
GAAGCTCTACGAACAAGCAC+CGG | 0.587738 | 5_3:-5324842 | None:intergenic |
CGAATTACAACAACTGGACG+AGG | 0.587930 | 5_3:-5330183 | None:intergenic |
TGATTCTAGGCGTAATGGAA+AGG | 0.589215 | 5_3:+5327639 | Msa0793330:CDS |
AAAGGATCTTCCTCTACTGT+GGG | 0.590284 | 5_3:+5326419 | Msa0793330:CDS |
TTGAGGTGTAGCGTGAATGG+AGG | 0.592594 | 5_3:-5324313 | None:intergenic |
GCGTCCCTTTCTTCCAGAGG+AGG | 0.594997 | 5_3:-5326837 | None:intergenic |
CGTCCCTTTCTTCCAGAGGA+GGG | 0.599989 | 5_3:-5326836 | None:intergenic |
GAGACCATGAAAGTGCATTG+TGG | 0.600387 | 5_3:+5326876 | Msa0793330:CDS |
CAAAATCCGAAATCATTCGT+GGG | 0.600820 | 5_3:+5324511 | Msa0793330:five_prime_UTR |
TATAACTTTATAGGTACTAA+GGG | 0.601886 | 5_3:-5326264 | None:intergenic |
GCTAAGCTTCCTATAACTAG+TGG | 0.604377 | 5_3:+5329150 | Msa0793330:CDS |
GACTCCGGGGAAGGGTGAAG+AGG | 0.604662 | 5_3:-5324428 | None:intergenic |
AAATGTTTCTGGATTGTGAG+AGG | 0.605555 | 5_3:+5329449 | Msa0793330:CDS |
GAAGCGTCCCTTTCTTCCAG+AGG | 0.614144 | 5_3:-5326840 | None:intergenic |
ACGCTTTGATGTCTTTGTCG+AGG | 0.624568 | 5_3:+5329029 | Msa0793330:CDS |
AAATTGAATATCGGATGTTG+GGG | 0.626381 | 5_3:-5327878 | None:intergenic |
GGCTGCTTTACACTTTACAA+AGG | 0.627522 | 5_3:+5324989 | Msa0793330:CDS |
ACTGATCTCTAGAAGTAAAG+CGG | 0.629422 | 5_3:-5329372 | None:intergenic |
TTGTAAAAGGAAGCAGACCT+GGG | 0.632901 | 5_3:+5327270 | Msa0793330:CDS |
TTAGTAGTATAGGGAACAGG+TGG | 0.633478 | 5_3:-5330219 | None:intergenic |
TGGGAGATGGAAGATGGAGA+TGG | 0.635417 | 5_3:-5324343 | None:intergenic |
TTACGCCTAGAATCAGCGTA+TGG | 0.636495 | 5_3:-5327631 | None:intergenic |
ATTATATGAAGATCGTAAAG+GGG | 0.638021 | 5_3:-5326384 | None:intergenic |
ACACTGATGTCCCACAGTAG+AGG | 0.638638 | 5_3:-5326429 | None:intergenic |
GGAACATCAGTAAACAAGCA+AGG | 0.641755 | 5_3:+5327488 | Msa0793330:CDS |
GTGAAGAAGAATCCTAGGCG+CGG | 0.647847 | 5_3:+5330252 | Msa0793330:CDS |
GTGAAGAGGAAATCAATGAA+CGG | 0.649413 | 5_3:-5324414 | None:intergenic |
TAGGGAACAGGTGGAAGACG+AGG | 0.652873 | 5_3:-5330210 | None:intergenic |
GGACGAGGACGAGGACGAGG+AGG | 0.654183 | 5_3:-5330168 | None:intergenic |
ATCGGAGAATCAGAGAATTG+GGG | 0.655976 | 5_3:-5324369 | None:intergenic |
TATGTTTCCAAGTGAACCAG+AGG | 0.659114 | 5_3:+5326791 | Msa0793330:CDS |
CCGGCTGATAGAAGACGTAC+CGG | 0.661574 | 5_3:+5326479 | Msa0793330:CDS |
TTGATCGGAAAAGAGGAAGT+GGG | 0.664244 | 5_3:-5324460 | None:intergenic |
GTACGTCTTCTATCAGCCGG+TGG | 0.665787 | 5_3:-5326476 | None:intergenic |
TTTCCAAGTGAACCAGAGGG+CGG | 0.677607 | 5_3:+5326795 | Msa0793330:CDS |
ATGTTTCCAAGTGAACCAGA+GGG | 0.698530 | 5_3:+5326792 | Msa0793330:CDS |
AATAATGAGTTAAACCATCG+TGG | 0.700929 | 5_3:-5329122 | None:intergenic |
ATCAATGAACGGAATCTCGG+CGG | 0.703651 | 5_3:-5324403 | None:intergenic |
TGGGTCCCACTGAGACTCCG+GGG | 0.710691 | 5_3:-5324441 | None:intergenic |
TCCACAGGAATATAGCACAC+AGG | 0.715049 | 5_3:-5326690 | None:intergenic |
AAGTACAGGAGACTCTGATG+GGG | 0.744993 | 5_3:-5326739 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAGTTATATTAATTTCTAAA+GGG | - | chr5_3:5326008-5326027 | None:intergenic | 10.0% |
!! | TTAGTTATATTAATTTCTAA+AGG | - | chr5_3:5326009-5326028 | None:intergenic | 10.0% |
!! | TATTTAAAAGTGAAAAAAAA+TGG | - | chr5_3:5329550-5329569 | None:intergenic | 10.0% |
!! | ATTTACAATTAAAACATAAA+AGG | - | chr5_3:5330487-5330506 | None:intergenic | 10.0% |
!! | ATTTACAATTAAAACATAAA+AGG | - | chr5_3:5330487-5330506 | None:intergenic | 10.0% |
!! | TTTCTATCATTAAATCATAT+CGG | + | chr5_3:5325099-5325118 | Msa0793330:intron | 15.0% |
!! | ATTATATTCATAATTTGATC+TGG | - | chr5_3:5325211-5325230 | None:intergenic | 15.0% |
!! | AGATCAAATTATGAATATAA+TGG | + | chr5_3:5325210-5325229 | Msa0793330:intron | 15.0% |
!!! | TTAAACTAGTTTTGTAATAT+TGG | + | chr5_3:5326083-5326102 | Msa0793330:intron | 15.0% |
!! | TATAATTTGAAAGGAAAAAA+AGG | + | chr5_3:5326401-5326420 | Msa0793330:CDS | 15.0% |
!!! | TTTTTAATTTTCTCATAACT+TGG | + | chr5_3:5326921-5326940 | Msa0793330:intron | 15.0% |
!!! | TTGAAATTTGATAGTATTTT+TGG | + | chr5_3:5327709-5327728 | Msa0793330:intron | 15.0% |
!! | TTTGTAAGTTTGTAATAAAT+AGG | + | chr5_3:5328587-5328606 | Msa0793330:intron | 15.0% |
!!! | CTCAATTTTCTAAAAATAAT+TGG | + | chr5_3:5329607-5329626 | Msa0793330:intron | 15.0% |
!! | AAAAATATAGACTAAAAACA+AGG | - | chr5_3:5329757-5329776 | None:intergenic | 15.0% |
!!! | ATAAAGAATTTTTATGTTGT+TGG | + | chr5_3:5330083-5330102 | Msa0793330:intron | 15.0% |
!! | ATCAAGACTAAAATAAAATT+TGG | - | chr5_3:5330341-5330360 | None:intergenic | 15.0% |
!!! | TTATTGTTTTCAAGAGATTT+TGG | + | chr5_3:5324667-5324686 | Msa0793330:five_prime_UTR | 20.0% |
!! | ACAAATCACTATATATAGTA+AGG | + | chr5_3:5325162-5325181 | Msa0793330:intron | 20.0% |
!! | TTGTCAAATTATGAATATAG+CGG | + | chr5_3:5325252-5325271 | Msa0793330:intron | 20.0% |
!!! | CAACAAAATATTTCTATCTT+TGG | - | chr5_3:5325868-5325887 | None:intergenic | 20.0% |
!!! | CAAAGATAGAAATATTTTGT+TGG | + | chr5_3:5325866-5325885 | Msa0793330:intron | 20.0% |
!! | ACATGTTAAGAATCTAAAAA+TGG | - | chr5_3:5325960-5325979 | None:intergenic | 20.0% |
!! | TATAACTTTATAGGTACTAA+GGG | - | chr5_3:5326267-5326286 | None:intergenic | 20.0% |
!! | AACAATAGAAACTAAGTTAA+AGG | + | chr5_3:5326298-5326317 | Msa0793330:CDS | 20.0% |
!! | AATTATATGAAGATCGTAAA+GGG | - | chr5_3:5326388-5326407 | None:intergenic | 20.0% |
!! | AAATTATATGAAGATCGTAA+AGG | - | chr5_3:5326389-5326408 | None:intergenic | 20.0% |
!! | ATACAACAAAACAAAACTTA+CGG | - | chr5_3:5326511-5326530 | None:intergenic | 20.0% |
!! | GTAAGTTAATAATGAAAACA+AGG | - | chr5_3:5326545-5326564 | None:intergenic | 20.0% |
!! | CTGTAAAAACAAATTCTTAT+GGG | - | chr5_3:5326993-5327012 | None:intergenic | 20.0% |
!! | TCTGTAAAAACAAATTCTTA+TGG | - | chr5_3:5326994-5327013 | None:intergenic | 20.0% |
!!! | AGAATTTGTTTTTACAGAAA+TGG | + | chr5_3:5326996-5327015 | Msa0793330:intron | 20.0% |
!!! | ACTTTTATAGAAAATACCAA+GGG | - | chr5_3:5328224-5328243 | None:intergenic | 20.0% |
!!! | AACTTTTATAGAAAATACCA+AGG | - | chr5_3:5328225-5328244 | None:intergenic | 20.0% |
!!! | GGTATTTTCTATAAAAGTTT+TGG | + | chr5_3:5328226-5328245 | Msa0793330:intron | 20.0% |
!! | TTAAAAGTGAAAATCGAAAT+TGG | + | chr5_3:5329855-5329874 | Msa0793330:intron | 20.0% |
!!! | AATTTGTTTCCTTTTATCAA+AGG | - | chr5_3:5329925-5329944 | None:intergenic | 20.0% |
!! | TTTATTTCAAAGAACAAATG+AGG | - | chr5_3:5330068-5330087 | None:intergenic | 20.0% |
!!! | TTTTGGTTACTTTTTTAACT+CGG | + | chr5_3:5330376-5330395 | Msa0793330:three_prime_UTR | 20.0% |
!! | TACAATTAAAACATAAAAGG+AGG | - | chr5_3:5330484-5330503 | None:intergenic | 20.0% |
!! | TACAATTAAAACATAAAAGG+AGG | - | chr5_3:5330484-5330503 | None:intergenic | 20.0% |
! | AGCCAAATACAAAAATGAAA+AGG | - | chr5_3:5324973-5324992 | None:intergenic | 25.0% |
!! | GTTTCTCTTATAGTTTTTCT+AGG | - | chr5_3:5325352-5325371 | None:intergenic | 25.0% |
! | AGATTTAGAGATTAATGAGT+TGG | + | chr5_3:5325381-5325400 | Msa0793330:intron | 25.0% |
!! | TAATGAGTTGGATCAAAATA+TGG | + | chr5_3:5325393-5325412 | Msa0793330:intron | 25.0% |
! | TGGTTTATGATAGAACATTA+CGG | + | chr5_3:5325413-5325432 | Msa0793330:intron | 25.0% |
! | CTAGTTTAATATATATGCAC+AGG | - | chr5_3:5326072-5326091 | None:intergenic | 25.0% |
! | TATCTAATCTGTATGTTTCA+TGG | + | chr5_3:5326170-5326189 | Msa0793330:intron | 25.0% |
! | CTATAACTTTATAGGTACTA+AGG | - | chr5_3:5326268-5326287 | None:intergenic | 25.0% |
! | CTTAGTACCTATAAAGTTAT+AGG | + | chr5_3:5326266-5326285 | Msa0793330:CDS | 25.0% |
! | TAGGCATAAAAATTCATTCA+GGG | + | chr5_3:5326349-5326368 | Msa0793330:CDS | 25.0% |
! | ATTATATGAAGATCGTAAAG+GGG | - | chr5_3:5326387-5326406 | None:intergenic | 25.0% |
! | CGATCTTCATATAATTTGAA+AGG | + | chr5_3:5326392-5326411 | Msa0793330:CDS | 25.0% |
! | GTCATAAATTGTACCAAATA+TGG | - | chr5_3:5327372-5327391 | None:intergenic | 25.0% |
! | TCATCAATGAACATATAGAA+AGG | - | chr5_3:5327523-5327542 | None:intergenic | 25.0% |
! | AGTGTGTAACTTATTATGTA+TGG | + | chr5_3:5327789-5327808 | Msa0793330:intron | 25.0% |
! | CATCAATCCAAATTGAATAT+CGG | - | chr5_3:5327890-5327909 | None:intergenic | 25.0% |
! | GATATTCAATTTGGATTGAT+GGG | + | chr5_3:5327889-5327908 | Msa0793330:CDS | 25.0% |
! | ACCTTTCAAGAATTTGATAT+GGG | - | chr5_3:5327935-5327954 | None:intergenic | 25.0% |
! | TACCTTTCAAGAATTTGATA+TGG | - | chr5_3:5327936-5327955 | None:intergenic | 25.0% |
! | TCAAATTCTTGAAAGGTAAA+AGG | + | chr5_3:5327938-5327957 | Msa0793330:intron | 25.0% |
! | AAATAAACCCTCTAATTGTA+TGG | - | chr5_3:5328088-5328107 | None:intergenic | 25.0% |
! | GTGTAATATTTCTTAGTTAG+TGG | - | chr5_3:5328475-5328494 | None:intergenic | 25.0% |
! | GTAATAAATAGGACAGTTAA+AGG | + | chr5_3:5328598-5328617 | Msa0793330:intron | 25.0% |
! | AAAGGAAAAATAGTTTAGTC+AGG | + | chr5_3:5328616-5328635 | Msa0793330:intron | 25.0% |
!! | AAAATAGTTTAGTCAGGTTT+TGG | + | chr5_3:5328622-5328641 | Msa0793330:intron | 25.0% |
!!! | GGTATTGATAAAATTGAACT+TGG | - | chr5_3:5329104-5329123 | None:intergenic | 25.0% |
!! | AAATAATGGCAAAAGTTGAT+TGG | + | chr5_3:5329419-5329438 | Msa0793330:CDS | 25.0% |
! | AGAAAACAATTTCTCAAATC+GGG | - | chr5_3:5329702-5329721 | None:intergenic | 25.0% |
! | CAGAAAACAATTTCTCAAAT+CGG | - | chr5_3:5329703-5329722 | None:intergenic | 25.0% |
! | ATGTACAAACCTTTGATAAA+AGG | + | chr5_3:5329913-5329932 | Msa0793330:intron | 25.0% |
! | AAATGAGGAAAGAAAAAAGA+AGG | - | chr5_3:5330053-5330072 | None:intergenic | 25.0% |
!!! | TTTGGTTACTTTTTTAACTC+GGG | + | chr5_3:5330377-5330396 | Msa0793330:three_prime_UTR | 25.0% |
!!! | TTTTCTTTCCCTTTTGAAAA+AGG | - | chr5_3:5330575-5330594 | None:intergenic | 25.0% |
! | TTCAAAAGGGAAAGAAAAAA+AGG | + | chr5_3:5330577-5330596 | Msa0793330:three_prime_UTR | 25.0% |
! | TCAAAAGGGAAAGAAAAAAA+GGG | + | chr5_3:5330578-5330597 | Msa0793330:three_prime_UTR | 25.0% |
GGTAAAAATGGAAACTTGAT+CGG | - | chr5_3:5324478-5324497 | None:intergenic | 30.0% | |
!! | AATGATTTCGGATTTTGAGT+GGG | - | chr5_3:5324508-5324527 | None:intergenic | 30.0% |
TTGAAATCAAATGTAGCTTC+TGG | + | chr5_3:5324550-5324569 | Msa0793330:five_prime_UTR | 30.0% | |
TGAAATCAAATGTAGCTTCT+GGG | + | chr5_3:5324551-5324570 | Msa0793330:five_prime_UTR | 30.0% | |
! | AGATTTGATTGTTGTTACAG+TGG | + | chr5_3:5324696-5324715 | Msa0793330:five_prime_UTR | 30.0% |
GAAAAGGAGATGAAATTGAA+AGG | + | chr5_3:5324732-5324751 | Msa0793330:five_prime_UTR | 30.0% | |
TTGTATATTTGTCGTCATCT+TGG | + | chr5_3:5324908-5324927 | Msa0793330:CDS | 30.0% | |
!! | GGCCTTTTCATTTTTGTATT+TGG | + | chr5_3:5324968-5324987 | Msa0793330:CDS | 30.0% |
TATAGCCACTATATGTAGTA+AGG | + | chr5_3:5325278-5325297 | Msa0793330:intron | 30.0% | |
!!! | GGTTAGTACTGATTTTATGA+AGG | + | chr5_3:5325673-5325692 | Msa0793330:intron | 30.0% |
GACGAACATAAAACATCTAT+GGG | - | chr5_3:5325788-5325807 | None:intergenic | 30.0% | |
!! | TCGTCGAGATATTTTAGAAA+TGG | + | chr5_3:5325803-5325822 | Msa0793330:intron | 30.0% |
!! | CGTCGAGATATTTTAGAAAT+GGG | + | chr5_3:5325804-5325823 | Msa0793330:intron | 30.0% |
AAACCAATCATATCTCATCA+TGG | - | chr5_3:5326038-5326057 | None:intergenic | 30.0% | |
TCGTGTATCTTCAATTTCAT+TGG | - | chr5_3:5326237-5326256 | None:intergenic | 30.0% | |
ATCAACGCCTATAACTTTAT+AGG | - | chr5_3:5326276-5326295 | None:intergenic | 30.0% | |
!! | TATAAAGTTATAGGCGTTGA+TGG | + | chr5_3:5326275-5326294 | Msa0793330:CDS | 30.0% |
GTAGGCATAAAAATTCATTC+AGG | + | chr5_3:5326348-5326367 | Msa0793330:CDS | 30.0% | |
AAATTCTTATGGGACACTAA+TGG | - | chr5_3:5326983-5327002 | None:intergenic | 30.0% | |
TGTCTCTACTTCATCAAATT+GGG | - | chr5_3:5327110-5327129 | None:intergenic | 30.0% | |
ATGTCTCTACTTCATCAAAT+TGG | - | chr5_3:5327111-5327130 | None:intergenic | 30.0% | |
TGTGTGTCAAATGTGATAAA+AGG | - | chr5_3:5327238-5327257 | None:intergenic | 30.0% | |
ACTCTTGACAGATTTGTAAA+AGG | + | chr5_3:5327257-5327276 | Msa0793330:intron | 30.0% | |
GGACAAAACAATATGTAGAT+CGG | - | chr5_3:5327400-5327419 | None:intergenic | 30.0% | |
CAATGAGAAACAGAAAACAA+AGG | - | chr5_3:5327421-5327440 | None:intergenic | 30.0% | |
TGTATTACATCATAGTTTCC+TGG | - | chr5_3:5327460-5327479 | None:intergenic | 30.0% | |
! | TATGAGAAATGCCAGTATTT+TGG | + | chr5_3:5327558-5327577 | Msa0793330:CDS | 30.0% |
GTGGCATGATATTAGAAATA+GGG | - | chr5_3:5327742-5327761 | None:intergenic | 30.0% | |
TATCGTACTCATTATATCGT+AGG | - | chr5_3:5327764-5327783 | None:intergenic | 30.0% | |
! | ATTCTGTGCAAAAGAAGTTT+TGG | - | chr5_3:5327855-5327874 | None:intergenic | 30.0% |
AAATTGAATATCGGATGTTG+GGG | - | chr5_3:5327881-5327900 | None:intergenic | 30.0% | |
CAAATTGAATATCGGATGTT+GGG | - | chr5_3:5327882-5327901 | None:intergenic | 30.0% | |
CGATATTCAATTTGGATTGA+TGG | + | chr5_3:5327888-5327907 | Msa0793330:CDS | 30.0% | |
ACCCATATCAAATTCTTGAA+AGG | + | chr5_3:5327931-5327950 | Msa0793330:CDS | 30.0% | |
AAAATCAGCCATACAATTAG+AGG | + | chr5_3:5328077-5328096 | Msa0793330:intron | 30.0% | |
AAATCAGCCATACAATTAGA+GGG | + | chr5_3:5328078-5328097 | Msa0793330:intron | 30.0% | |
TAAAAACATGCAAATCCATG+CGG | - | chr5_3:5328135-5328154 | None:intergenic | 30.0% | |
AACTTGAAACCAAATTGCAA+GGG | - | chr5_3:5328193-5328212 | None:intergenic | 30.0% | |
AAACTTGAAACCAAATTGCA+AGG | - | chr5_3:5328194-5328213 | None:intergenic | 30.0% | |
!! | AATATGTAGCCCTTAGTTTT+TGG | + | chr5_3:5328313-5328332 | Msa0793330:intron | 30.0% |
TATAGTGCACCAAAAACTAA+GGG | - | chr5_3:5328325-5328344 | None:intergenic | 30.0% | |
ATATAGTGCACCAAAAACTA+AGG | - | chr5_3:5328326-5328345 | None:intergenic | 30.0% | |
!! | TTTTGGTTAAGGAATTGGAA+TGG | + | chr5_3:5328639-5328658 | Msa0793330:intron | 30.0% |
ATAGGAAATTTCAAGAGACA+GGG | - | chr5_3:5328716-5328735 | None:intergenic | 30.0% | |
ATTACTGTTGACAAATGACA+GGG | - | chr5_3:5328902-5328921 | None:intergenic | 30.0% | |
AATTACTGTTGACAAATGAC+AGG | - | chr5_3:5328903-5328922 | None:intergenic | 30.0% | |
AAATGGCAAAAGTAGCATTT+GGG | - | chr5_3:5328996-5329015 | None:intergenic | 30.0% | |
! | CAATTTTATCAATACCACGA+TGG | + | chr5_3:5329108-5329127 | Msa0793330:CDS | 30.0% |
AATAATGAGTTAAACCATCG+TGG | - | chr5_3:5329125-5329144 | None:intergenic | 30.0% | |
ATGGTTTAACTCATTATTCC+AGG | + | chr5_3:5329127-5329146 | Msa0793330:CDS | 30.0% | |
TGGTTTAACTCATTATTCCA+GGG | + | chr5_3:5329128-5329147 | Msa0793330:CDS | 30.0% | |
TTGTTCTTACCACTAGTTAT+AGG | - | chr5_3:5329162-5329181 | None:intergenic | 30.0% | |
GCAAAATAGGTTATTATGTG+CGG | + | chr5_3:5329207-5329226 | Msa0793330:intron | 30.0% | |
CAGGTAAACAGATTTGTAAT+TGG | - | chr5_3:5329331-5329350 | None:intergenic | 30.0% | |
! | TTGGAGTATCAAAATGTTTC+TGG | + | chr5_3:5329438-5329457 | Msa0793330:CDS | 30.0% |
ATAAGTGTTTCAGAGATCTT+TGG | + | chr5_3:5329567-5329586 | Msa0793330:intron | 30.0% | |
TAAGTGTTTCAGAGATCTTT+GGG | + | chr5_3:5329568-5329587 | Msa0793330:intron | 30.0% | |
AATTAGCCAAAATCTCATGA+GGG | - | chr5_3:5329968-5329987 | None:intergenic | 30.0% | |
AAAAAGTAACCAAAACCTCA+AGG | - | chr5_3:5330371-5330390 | None:intergenic | 30.0% | |
!!! | TTGGTTACTTTTTTAACTCG+GGG | + | chr5_3:5330378-5330397 | Msa0793330:three_prime_UTR | 30.0% |
!!! | CTTGCTTACCTTTTTCAAAA+GGG | + | chr5_3:5330564-5330583 | Msa0793330:three_prime_UTR | 30.0% |
AATCAGAGAATTGGGGAATT+GGG | - | chr5_3:5324365-5324384 | None:intergenic | 35.0% | |
AATCGGAGAATCAGAGAATT+GGG | - | chr5_3:5324373-5324392 | None:intergenic | 35.0% | |
GAAATCAATGAACGGAATCT+CGG | - | chr5_3:5324409-5324428 | None:intergenic | 35.0% | |
GTGAAGAGGAAATCAATGAA+CGG | - | chr5_3:5324417-5324436 | None:intergenic | 35.0% | |
!! | ATGATTTCGGATTTTGAGTG+GGG | - | chr5_3:5324507-5324526 | None:intergenic | 35.0% |
! | GAATGATTTCGGATTTTGAG+TGG | - | chr5_3:5324509-5324528 | None:intergenic | 35.0% |
TCAAAATCCGAAATCATTCG+TGG | + | chr5_3:5324510-5324529 | Msa0793330:five_prime_UTR | 35.0% | |
CAAAATCCGAAATCATTCGT+GGG | + | chr5_3:5324511-5324530 | Msa0793330:five_prime_UTR | 35.0% | |
TTGATTTCAAGCGATGAGAA+GGG | - | chr5_3:5324540-5324559 | None:intergenic | 35.0% | |
! | TTTGATTTCAAGCGATGAGA+AGG | - | chr5_3:5324541-5324560 | None:intergenic | 35.0% |
GAAATCAAATGTAGCTTCTG+GGG | + | chr5_3:5324552-5324571 | Msa0793330:five_prime_UTR | 35.0% | |
! | TTTGATTGTTGTTACAGTGG+TGG | + | chr5_3:5324699-5324718 | Msa0793330:five_prime_UTR | 35.0% |
! | TTGATTGTTGTTACAGTGGT+GGG | + | chr5_3:5324700-5324719 | Msa0793330:five_prime_UTR | 35.0% |
! | TCTCTGCAGTTGATTCAAAA+CGG | + | chr5_3:5324803-5324822 | Msa0793330:CDS | 35.0% |
!! | CTTTCTCTTTGGGGTTATAA+AGG | - | chr5_3:5324877-5324896 | None:intergenic | 35.0% |
! | TATCGGTTGTTGTTAAGTAG+TGG | + | chr5_3:5325116-5325135 | Msa0793330:intron | 35.0% |
ACTCTCCTTACTACATATAG+TGG | - | chr5_3:5325286-5325305 | None:intergenic | 35.0% | |
! | AAGTCTTATCCCACTAAATG+GGG | - | chr5_3:5325462-5325481 | None:intergenic | 35.0% |
! | CAAGTCTTATCCCACTAAAT+GGG | - | chr5_3:5325463-5325482 | None:intergenic | 35.0% |
TTGCTACATAGATGTGGATT+TGG | + | chr5_3:5325580-5325599 | Msa0793330:intron | 35.0% | |
!! | TCTACCATTGATTCAACATC+GGG | - | chr5_3:5325649-5325668 | None:intergenic | 35.0% |
!! | CTCTACCATTGATTCAACAT+CGG | - | chr5_3:5325650-5325669 | None:intergenic | 35.0% |
GTTGAATCAATGGTAGAGAT+TGG | + | chr5_3:5325652-5325671 | Msa0793330:intron | 35.0% | |
!! | CTCAGTCATTGATTTGAGAT+TGG | - | chr5_3:5325714-5325733 | None:intergenic | 35.0% |
TCTAATACTACGTGTAACTG+CGG | + | chr5_3:5325735-5325754 | Msa0793330:intron | 35.0% | |
CGACGAACATAAAACATCTA+TGG | - | chr5_3:5325789-5325808 | None:intergenic | 35.0% | |
ACACCATGATGAGATATGAT+TGG | + | chr5_3:5326032-5326051 | Msa0793330:intron | 35.0% | |
! | TATGTTTCATGGTGTGCTTT+TGG | + | chr5_3:5326181-5326200 | Msa0793330:intron | 35.0% |
!! | TTGGTGTTGTGTTGAACTAT+AGG | + | chr5_3:5326200-5326219 | Msa0793330:intron | 35.0% |
CATCAAAATCAAATCCAGTC+TGG | - | chr5_3:5327298-5327317 | None:intergenic | 35.0% | |
!! | GACTGGATTTGATTTTGATG+AGG | + | chr5_3:5327298-5327317 | Msa0793330:CDS | 35.0% |
CAGATGCAACAATGATATCA+TGG | - | chr5_3:5327349-5327368 | None:intergenic | 35.0% | |
ATTGTTGCATCTGCCATATT+TGG | + | chr5_3:5327356-5327375 | Msa0793330:CDS | 35.0% | |
TATGGAGAATCATTGTTGTC+CGG | + | chr5_3:5327602-5327621 | Msa0793330:CDS | 35.0% | |
AATCAGCGTATGGAATATTC+CGG | - | chr5_3:5327624-5327643 | None:intergenic | 35.0% | |
!! | ATATTCCATACGCTGATTCT+AGG | + | chr5_3:5327626-5327645 | Msa0793330:CDS | 35.0% |
GGTGGCATGATATTAGAAAT+AGG | - | chr5_3:5327743-5327762 | None:intergenic | 35.0% | |
! | GAGGCATCATAATTCATAAG+AGG | - | chr5_3:5327815-5327834 | None:intergenic | 35.0% |
GGAATCTGCAATAAGTTTAG+AGG | - | chr5_3:5327834-5327853 | None:intergenic | 35.0% | |
CCAAATTGAATATCGGATGT+TGG | - | chr5_3:5327883-5327902 | None:intergenic | 35.0% | |
CCAACATCCGATATTCAATT+TGG | + | chr5_3:5327880-5327899 | Msa0793330:CDS | 35.0% | |
! | TTGCTAAATGATTTTCCGCA+TGG | + | chr5_3:5328117-5328136 | Msa0793330:intron | 35.0% |
ACTTAGCAAAGTTACCTAGA+AGG | + | chr5_3:5328359-5328378 | Msa0793330:intron | 35.0% | |
TTTCTTAGTTAGTGGTCGAA+CGG | - | chr5_3:5328467-5328486 | None:intergenic | 35.0% | |
TTACACTAAGAGACCTAAAC+AGG | + | chr5_3:5328489-5328508 | Msa0793330:intron | 35.0% | |
!!! | GTTTAGTCAGGTTTTGGTTA+AGG | + | chr5_3:5328628-5328647 | Msa0793330:intron | 35.0% |
!!! | TCAGGTTTTGGTTAAGGAAT+TGG | + | chr5_3:5328634-5328653 | Msa0793330:intron | 35.0% |
CATAGGAAATTTCAAGAGAC+AGG | - | chr5_3:5328717-5328736 | None:intergenic | 35.0% | |
TTGTAAACATAGACCTCATG+AGG | + | chr5_3:5328856-5328875 | Msa0793330:intron | 35.0% | |
CTGGATGATATAAAAGAGAG+TGG | - | chr5_3:5328961-5328980 | None:intergenic | 35.0% | |
! | CACTCTCTTTTATATCATCC+AGG | + | chr5_3:5328959-5328978 | Msa0793330:intron | 35.0% |
TTATATCATCCAGGTTCTTG+TGG | + | chr5_3:5328968-5328987 | Msa0793330:intron | 35.0% | |
GAAATGGCAAAAGTAGCATT+TGG | - | chr5_3:5328997-5329016 | None:intergenic | 35.0% | |
AAATTGAACTTGGCGATCAA+TGG | - | chr5_3:5329094-5329113 | None:intergenic | 35.0% | |
! | ATAACCTATTTTGCACACAC+AGG | - | chr5_3:5329201-5329220 | None:intergenic | 35.0% |
CTAATGATAACACAACCTTC+AGG | - | chr5_3:5329298-5329317 | None:intergenic | 35.0% | |
CAAATCTGTTTACCTGCTTA+TGG | + | chr5_3:5329335-5329354 | Msa0793330:CDS | 35.0% | |
AACTTCATTGAACCATAAGC+AGG | - | chr5_3:5329350-5329369 | None:intergenic | 35.0% | |
! | ACTGATCTCTAGAAGTAAAG+CGG | - | chr5_3:5329375-5329394 | None:intergenic | 35.0% |
! | AGATCAGTTAAGCTTTTCCA+CGG | + | chr5_3:5329387-5329406 | Msa0793330:CDS | 35.0% |
!! | CATTATTTTGTCTCTTACCG+TGG | - | chr5_3:5329407-5329426 | None:intergenic | 35.0% |
CACGGTAAGAGACAAAATAA+TGG | + | chr5_3:5329405-5329424 | Msa0793330:CDS | 35.0% | |
!! | AAATGTTTCTGGATTGTGAG+AGG | + | chr5_3:5329449-5329468 | Msa0793330:CDS | 35.0% |
CCAAACTGAACACAGAAAAA+TGG | - | chr5_3:5329511-5329530 | None:intergenic | 35.0% | |
!! | CCATTTTTCTGTGTTCAGTT+TGG | + | chr5_3:5329508-5329527 | Msa0793330:intron | 35.0% |
AAGTGTTTCAGAGATCTTTG+GGG | + | chr5_3:5329569-5329588 | Msa0793330:intron | 35.0% | |
CAGTGATTCAATAGAACTGA+GGG | - | chr5_3:5329644-5329663 | None:intergenic | 35.0% | |
TCAGTGATTCAATAGAACTG+AGG | - | chr5_3:5329645-5329664 | None:intergenic | 35.0% | |
TGAATCACTGAACATTGTGA+AGG | + | chr5_3:5329654-5329673 | Msa0793330:intron | 35.0% | |
AAACAATTTCTCAAATCGGG+TGG | - | chr5_3:5329699-5329718 | None:intergenic | 35.0% | |
TGAACATTTGTACGTGAAAC+AGG | + | chr5_3:5329776-5329795 | Msa0793330:intron | 35.0% | |
CAGAGTTGTACAGAAAATAG+TGG | - | chr5_3:5329812-5329831 | None:intergenic | 35.0% | |
! | TCTGTACAACTCTGAAAACA+AGG | + | chr5_3:5329818-5329837 | Msa0793330:intron | 35.0% |
! | ATTTTCCCCTCATGAGATTT+TGG | + | chr5_3:5329959-5329978 | Msa0793330:intron | 35.0% |
ATTAGCCAAAATCTCATGAG+GGG | - | chr5_3:5329967-5329986 | None:intergenic | 35.0% | |
GAATTAGCCAAAATCTCATG+AGG | - | chr5_3:5329969-5329988 | None:intergenic | 35.0% | |
GAGGAAAGAAAAAAGAAGGT+TGG | - | chr5_3:5330049-5330068 | None:intergenic | 35.0% | |
TTGTTAGTAGTATAGGGAAC+AGG | - | chr5_3:5330225-5330244 | None:intergenic | 35.0% | |
!! | AGAGGCTTGTTAGTAGTATA+GGG | - | chr5_3:5330231-5330250 | None:intergenic | 35.0% |
! | ATCTTTTCTCCTTGAGGTTT+TGG | + | chr5_3:5330359-5330378 | Msa0793330:three_prime_UTR | 35.0% |
!! | CCTTTTGAAAAAGGTAAGCA+AGG | - | chr5_3:5330566-5330585 | None:intergenic | 35.0% |
!!! | CCTTGCTTACCTTTTTCAAA+AGG | + | chr5_3:5330563-5330582 | Msa0793330:three_prime_UTR | 35.0% |
GAATCAGAGAATTGGGGAAT+TGG | - | chr5_3:5324366-5324385 | None:intergenic | 40.0% | |
ATCGGAGAATCAGAGAATTG+GGG | - | chr5_3:5324372-5324391 | None:intergenic | 40.0% | |
GAATCGGAGAATCAGAGAAT+TGG | - | chr5_3:5324374-5324393 | None:intergenic | 40.0% | |
TTGATCGGAAAAGAGGAAGT+GGG | - | chr5_3:5324463-5324482 | None:intergenic | 40.0% | |
TGGAAACTTGATCGGAAAAG+AGG | - | chr5_3:5324470-5324489 | None:intergenic | 40.0% | |
ATTGAAAGGAGAGAGATGAC+TGG | + | chr5_3:5324746-5324765 | Msa0793330:exon | 40.0% | |
ATAACCCCAAAGAGAAAGAG+AGG | + | chr5_3:5324879-5324898 | Msa0793330:CDS | 40.0% | |
AACTCCTCTCTTTCTCTTTG+GGG | - | chr5_3:5324886-5324905 | None:intergenic | 40.0% | |
CAACTCCTCTCTTTCTCTTT+GGG | - | chr5_3:5324887-5324906 | None:intergenic | 40.0% | |
ACAACTCCTCTCTTTCTCTT+TGG | - | chr5_3:5324888-5324907 | None:intergenic | 40.0% | |
ATGCTTCTCATGCTTCTTTG+TGG | + | chr5_3:5324947-5324966 | Msa0793330:CDS | 40.0% | |
! | GGCTGCTTTACACTTTACAA+AGG | + | chr5_3:5324989-5325008 | Msa0793330:CDS | 40.0% |
AGTAAGGAGAGTAGATCAGA+TGG | + | chr5_3:5325178-5325197 | Msa0793330:intron | 40.0% | |
AGTAAGGAGAGTAGATCAGA+TGG | + | chr5_3:5325178-5325197 | Msa0793330:intron | 40.0% | |
ATGGAGGATAGTTAGATCAC+TGG | + | chr5_3:5325313-5325332 | Msa0793330:intron | 40.0% | |
AGTTAGATCACTGGATGTAG+AGG | + | chr5_3:5325322-5325341 | Msa0793330:intron | 40.0% | |
! | CCAAGTCTTATCCCACTAAA+TGG | - | chr5_3:5325464-5325483 | None:intergenic | 40.0% |
CCATTTAGTGGGATAAGACT+TGG | + | chr5_3:5325461-5325480 | Msa0793330:intron | 40.0% | |
ACGATCAATGTTGTCAATCG+CGG | - | chr5_3:5325557-5325576 | None:intergenic | 40.0% | |
CGTATCTTGCTACATAGATG+TGG | + | chr5_3:5325574-5325593 | Msa0793330:intron | 40.0% | |
AATGTTATCTTGTGCCCTCA+AGG | + | chr5_3:5325828-5325847 | Msa0793330:intron | 40.0% | |
!! | CTTCTTAACTTGTGCCTTGA+GGG | - | chr5_3:5325845-5325864 | None:intergenic | 40.0% |
ATTCTTAACATGTGCCCTGA+GGG | + | chr5_3:5325967-5325986 | Msa0793330:intron | 40.0% | |
GTGTTGTGTTGAACTATAGG+TGG | + | chr5_3:5326203-5326222 | Msa0793330:intron | 40.0% | |
AAAAGGATCTTCCTCTACTG+TGG | + | chr5_3:5326418-5326437 | Msa0793330:CDS | 40.0% | |
AAAGGATCTTCCTCTACTGT+GGG | + | chr5_3:5326419-5326438 | Msa0793330:CDS | 40.0% | |
ACAAAACAAAACTTACGGCG+TGG | - | chr5_3:5326506-5326525 | None:intergenic | 40.0% | |
TATGTTTCCAAGTGAACCAG+AGG | + | chr5_3:5326791-5326810 | Msa0793330:CDS | 40.0% | |
ATGTTTCCAAGTGAACCAGA+GGG | + | chr5_3:5326792-5326811 | Msa0793330:CDS | 40.0% | |
! | AGACCATGAAAGTGCATTGT+GGG | + | chr5_3:5326877-5326896 | Msa0793330:CDS | 40.0% |
TAACCCACAATGCACTTTCA+TGG | - | chr5_3:5326883-5326902 | None:intergenic | 40.0% | |
TTCTTGCAGTGACTGTATCT+CGG | + | chr5_3:5327036-5327055 | Msa0793330:intron | 40.0% | |
CCGTTGAACGAAGATCAAAT+GGG | - | chr5_3:5327136-5327155 | None:intergenic | 40.0% | |
CCCATTTGATCTTCGTTCAA+CGG | + | chr5_3:5327133-5327152 | Msa0793330:intron | 40.0% | |
ACCGTTGAACGAAGATCAAA+TGG | - | chr5_3:5327137-5327156 | None:intergenic | 40.0% | |
TTCGTTCAACGGTTTAGATG+TGG | + | chr5_3:5327144-5327163 | Msa0793330:intron | 40.0% | |
TTTGTAAAAGGAAGCAGACC+TGG | + | chr5_3:5327269-5327288 | Msa0793330:CDS | 40.0% | |
TTGTAAAAGGAAGCAGACCT+GGG | + | chr5_3:5327270-5327289 | Msa0793330:CDS | 40.0% | |
GCTTGTTTACTGATGTTCCT+GGG | - | chr5_3:5327487-5327506 | None:intergenic | 40.0% | |
TGCTTGTTTACTGATGTTCC+TGG | - | chr5_3:5327488-5327507 | None:intergenic | 40.0% | |
GGAACATCAGTAAACAAGCA+AGG | + | chr5_3:5327488-5327507 | Msa0793330:CDS | 40.0% | |
!! | ATGCCAGTATTTTGGATAGC+AGG | + | chr5_3:5327566-5327585 | Msa0793330:CDS | 40.0% |
! | TGATTCTAGGCGTAATGGAA+AGG | + | chr5_3:5327639-5327658 | Msa0793330:CDS | 40.0% |
CGTACTCATTATATCGTAGG+TGG | - | chr5_3:5327761-5327780 | None:intergenic | 40.0% | |
TATTCCTGTTGTACGTAGAG+TGG | + | chr5_3:5327984-5328003 | Msa0793330:intron | 40.0% | |
ATTCCTGTTGTACGTAGAGT+GGG | + | chr5_3:5327985-5328004 | Msa0793330:intron | 40.0% | |
TCACTCAATGAAAGCCTTCT+AGG | - | chr5_3:5328376-5328395 | None:intergenic | 40.0% | |
GTGAAGAACTGCTTACTCTA+AGG | + | chr5_3:5328415-5328434 | Msa0793330:intron | 40.0% | |
TCGCACAATAACTATCCCAA+GGG | - | chr5_3:5328526-5328545 | None:intergenic | 40.0% | |
ATCGCACAATAACTATCCCA+AGG | - | chr5_3:5328527-5328546 | None:intergenic | 40.0% | |
GATTCCACGCTTTCAAAACT+TGG | + | chr5_3:5328665-5328684 | Msa0793330:intron | 40.0% | |
CACGCTTTCAAAACTTGGAA+GGG | + | chr5_3:5328670-5328689 | Msa0793330:intron | 40.0% | |
GACAGGGATGACATAATGTT+TGG | - | chr5_3:5328700-5328719 | None:intergenic | 40.0% | |
CACATGCAACAACACAACAT+AGG | - | chr5_3:5328734-5328753 | None:intergenic | 40.0% | |
TGTTGATACACTGTCTCAGA+GGG | + | chr5_3:5328778-5328797 | Msa0793330:intron | 40.0% | |
GCGTCTATAGTGTCTTGAAA+TGG | - | chr5_3:5329013-5329032 | None:intergenic | 40.0% | |
GCTAAGCTTCCTATAACTAG+TGG | + | chr5_3:5329150-5329169 | Msa0793330:CDS | 40.0% | |
! | GGAGTATTATATGCAACCAC+AGG | - | chr5_3:5329242-5329261 | None:intergenic | 40.0% |
GAGGCGTAACTTTGTAATAC+AGG | + | chr5_3:5329468-5329487 | Msa0793330:CDS | 40.0% | |
GGTTTGTGATAAACAATGCC+AGG | + | chr5_3:5330104-5330123 | Msa0793330:intron | 40.0% | |
TGTTCTCCAATACGTCTCTA+TGG | - | chr5_3:5330134-5330153 | None:intergenic | 40.0% | |
CTCGTCCAGTTGTTGTAATT+CGG | + | chr5_3:5330184-5330203 | Msa0793330:CDS | 40.0% | |
TTAGTAGTATAGGGAACAGG+TGG | - | chr5_3:5330222-5330241 | None:intergenic | 40.0% | |
!! | CAGAGGCTTGTTAGTAGTAT+AGG | - | chr5_3:5330232-5330251 | None:intergenic | 40.0% |
CTATACTACTAACAAGCCTC+TGG | + | chr5_3:5330230-5330249 | Msa0793330:CDS | 40.0% | |
! | GTCTTGATCTTTTCTCCTTG+AGG | + | chr5_3:5330353-5330372 | Msa0793330:exon | 40.0% |
!! | AGGAGGCAGCATTTTTGAAA+TGG | - | chr5_3:5330467-5330486 | None:intergenic | 40.0% |
TGAATGGAGGGAAGAGAGAA+TGG | - | chr5_3:5324303-5324322 | None:intergenic | 45.0% | |
!! | ATGGAGATGGTGATGGATTG+AGG | - | chr5_3:5324333-5324352 | None:intergenic | 45.0% |
ATGGAAGATGGAGATGGTGA+TGG | - | chr5_3:5324340-5324359 | None:intergenic | 45.0% | |
AGAATTGGGGAATTGGGAGA+TGG | - | chr5_3:5324359-5324378 | None:intergenic | 45.0% | |
ATCAATGAACGGAATCTCGG+CGG | - | chr5_3:5324406-5324425 | None:intergenic | 45.0% | |
CTTGATCGGAAAAGAGGAAG+TGG | - | chr5_3:5324464-5324483 | None:intergenic | 45.0% | |
!! | ATTTCGGATTTTGAGTGGGG+TGG | - | chr5_3:5324504-5324523 | None:intergenic | 45.0% |
GGGAAACCCACGAATGATTT+CGG | - | chr5_3:5324520-5324539 | None:intergenic | 45.0% | |
!! | TGTTACAGTGGTGGGTTTGA+TGG | + | chr5_3:5324708-5324727 | Msa0793330:five_prime_UTR | 45.0% |
!! | TGGTGGGTTTGATGGTGAAA+AGG | + | chr5_3:5324716-5324735 | Msa0793330:five_prime_UTR | 45.0% |
! | AGAGATGACTGGAGTGTCAT+TGG | + | chr5_3:5324757-5324776 | Msa0793330:exon | 45.0% |
! | GAGATGACTGGAGTGTCATT+GGG | + | chr5_3:5324758-5324777 | Msa0793330:exon | 45.0% |
TCAAAACGGTAACGTTTCGC+AGG | + | chr5_3:5324817-5324836 | Msa0793330:CDS | 45.0% | |
ATTTGTCGTCATCTTGGTCG+TGG | + | chr5_3:5324914-5324933 | Msa0793330:CDS | 45.0% | |
AAGGAGAGTAGATCAGATGG+AGG | + | chr5_3:5325181-5325200 | Msa0793330:intron | 45.0% | |
AAGGAGAGTAGATCAGATGG+AGG | + | chr5_3:5325181-5325200 | Msa0793330:intron | 45.0% | |
CTTATCCCACTAAATGGGGT+CGG | - | chr5_3:5325458-5325477 | None:intergenic | 45.0% | |
!! | ACCATTGATTCAACATCGGG+CGG | - | chr5_3:5325646-5325665 | None:intergenic | 45.0% |
TGATCCCCTGCAGTAGAAAA+AGG | - | chr5_3:5325761-5325780 | None:intergenic | 45.0% | |
! | TTTTCTACTGCAGGGGATCA+TGG | + | chr5_3:5325761-5325780 | Msa0793330:intron | 45.0% |
!! | GCTTCTTAACTTGTGCCTTG+AGG | - | chr5_3:5325846-5325865 | None:intergenic | 45.0% |
GATTCTTAACATGTGCCCTG+AGG | + | chr5_3:5325966-5325985 | Msa0793330:intron | 45.0% | |
AGTGTTATCTTGTGCCCTCA+GGG | - | chr5_3:5325984-5326003 | None:intergenic | 45.0% | |
TAGTGTTATCTTGTGCCCTC+AGG | - | chr5_3:5325985-5326004 | None:intergenic | 45.0% | |
CTTCTACGTCGTTGACAAGT+AGG | + | chr5_3:5326330-5326349 | Msa0793330:CDS | 45.0% | |
GAAGATCGTAAAGGGGAAAC+AGG | - | chr5_3:5326380-5326399 | None:intergenic | 45.0% | |
GAGGAGGAGGAAATGCAAAA+TGG | - | chr5_3:5326457-5326476 | None:intergenic | 45.0% | |
TCCTGTGTGCTATATTCCTG+TGG | + | chr5_3:5326689-5326708 | Msa0793330:CDS | 45.0% | |
TCCACAGGAATATAGCACAC+AGG | - | chr5_3:5326693-5326712 | None:intergenic | 45.0% | |
AAGTACAGGAGACTCTGATG+GGG | - | chr5_3:5326742-5326761 | None:intergenic | 45.0% | |
GAAGTACAGGAGACTCTGAT+GGG | - | chr5_3:5326743-5326762 | None:intergenic | 45.0% | |
! | TATGTGAGAGTGCGAAGTAC+AGG | - | chr5_3:5326756-5326775 | None:intergenic | 45.0% |
! | ATACCCTCCTCTGGAAGAAA+GGG | + | chr5_3:5326833-5326852 | Msa0793330:CDS | 45.0% |
! | GAGACCATGAAAGTGCATTG+TGG | + | chr5_3:5326876-5326895 | Msa0793330:CDS | 45.0% |
AGTGACTGTATCTCGGTTGT+TGG | + | chr5_3:5327043-5327062 | Msa0793330:intron | 45.0% | |
TGAGGAAGACCTCTTAGAGT+TGG | + | chr5_3:5327316-5327335 | Msa0793330:CDS | 45.0% | |
!! | GGTACTGATCCAACTCTAAG+AGG | - | chr5_3:5327328-5327347 | None:intergenic | 45.0% |
GTTTCCTGGCATAGATGTGA+TGG | - | chr5_3:5327446-5327465 | None:intergenic | 45.0% | |
ATGATGTAATACAGCAGCCC+AGG | + | chr5_3:5327467-5327486 | Msa0793330:CDS | 45.0% | |
CCTCCTGCTATCCAAAATAC+TGG | - | chr5_3:5327572-5327591 | None:intergenic | 45.0% | |
!! | CCAGTATTTTGGATAGCAGG+AGG | + | chr5_3:5327569-5327588 | Msa0793330:CDS | 45.0% |
TTACGCCTAGAATCAGCGTA+TGG | - | chr5_3:5327634-5327653 | None:intergenic | 45.0% | |
!! | TACGCTGATTCTAGGCGTAA+TGG | + | chr5_3:5327634-5327653 | Msa0793330:CDS | 45.0% |
TATCCCACTCTACGTACAAC+AGG | - | chr5_3:5327991-5328010 | None:intergenic | 45.0% | |
TGTGCACATCCCTTGCAATT+TGG | + | chr5_3:5328181-5328200 | Msa0793330:intron | 45.0% | |
! | TTCAAGTTTGTCTCTGCCCT+TGG | + | chr5_3:5328205-5328224 | Msa0793330:intron | 45.0% |
!! | TTACTCTAAGGCAGACTGCA+AGG | + | chr5_3:5328427-5328446 | Msa0793330:intron | 45.0% |
AGACCTAAACAGGTCTGAAC+CGG | + | chr5_3:5328499-5328518 | Msa0793330:intron | 45.0% | |
CAATAACTATCCCAAGGGAC+CGG | - | chr5_3:5328521-5328540 | None:intergenic | 45.0% | |
!!! | CCTTCCAAGTTTTGAAAGCG+TGG | - | chr5_3:5328672-5328691 | None:intergenic | 45.0% |
CCACGCTTTCAAAACTTGGA+AGG | + | chr5_3:5328669-5328688 | Msa0793330:intron | 45.0% | |
CTGTTGATACACTGTCTCAG+AGG | + | chr5_3:5328777-5328796 | Msa0793330:intron | 45.0% | |
TCATGAGGCCTCTCCTTATT+GGG | + | chr5_3:5328871-5328890 | Msa0793330:intron | 45.0% | |
ACGCTTTGATGTCTTTGTCG+AGG | + | chr5_3:5329029-5329048 | Msa0793330:CDS | 45.0% | |
GCAGAGGCTAATAAAGTTGC+TGG | + | chr5_3:5329051-5329070 | Msa0793330:CDS | 45.0% | |
AGTTATAGGAAGCTTAGCCC+TGG | - | chr5_3:5329148-5329167 | None:intergenic | 45.0% | |
CATGCCTGTGTGTGCAAAAT+AGG | + | chr5_3:5329194-5329213 | Msa0793330:intron | 45.0% | |
! | GGCACAAGGCACATTTTAGA+TGG | - | chr5_3:5329263-5329282 | None:intergenic | 45.0% |
TTCTCAAATCGGGTGGACAT+GGG | - | chr5_3:5329692-5329711 | None:intergenic | 45.0% | |
TTTCTCAAATCGGGTGGACA+TGG | - | chr5_3:5329693-5329712 | None:intergenic | 45.0% | |
CGAATTACAACAACTGGACG+AGG | - | chr5_3:5330186-5330205 | None:intergenic | 45.0% | |
CTAGGATTCTTCTTCACCAG+AGG | - | chr5_3:5330249-5330268 | None:intergenic | 45.0% | |
CTCTGGTGAAGAAGAATCCT+AGG | + | chr5_3:5330247-5330266 | Msa0793330:CDS | 45.0% | |
TGAGGTGTAGCGTGAATGGA+GGG | - | chr5_3:5324315-5324334 | None:intergenic | 50.0% | |
TTGAGGTGTAGCGTGAATGG+AGG | - | chr5_3:5324316-5324335 | None:intergenic | 50.0% | |
GGATTGAGGTGTAGCGTGAA+TGG | - | chr5_3:5324319-5324338 | None:intergenic | 50.0% | |
TGGGAGATGGAAGATGGAGA+TGG | - | chr5_3:5324346-5324365 | None:intergenic | 50.0% | |
GGGAATTGGGAGATGGAAGA+TGG | - | chr5_3:5324352-5324371 | None:intergenic | 50.0% | |
ATTTCCTCTTCACCCTTCCC+CGG | + | chr5_3:5324424-5324443 | Msa0793330:five_prime_UTR | 50.0% | |
! | GTGTCATTGGGTCTACGAAC+AGG | + | chr5_3:5324770-5324789 | Msa0793330:CDS | 50.0% |
GGTCTACGAACAGGTAGCTA+TGG | + | chr5_3:5324779-5324798 | Msa0793330:CDS | 50.0% | |
GAAGCTCTACGAACAAGCAC+CGG | - | chr5_3:5324845-5324864 | None:intergenic | 50.0% | |
ACTAAATGGGGTCGGCTACA+TGG | - | chr5_3:5325450-5325469 | None:intergenic | 50.0% | |
ATGTAGCCGACCCCATTTAG+TGG | + | chr5_3:5325449-5325468 | Msa0793330:intron | 50.0% | |
TGTAGCCGACCCCATTTAGT+GGG | + | chr5_3:5325450-5325469 | Msa0793330:intron | 50.0% | |
ATGTTGTCAATCGCGGATCG+TGG | - | chr5_3:5325550-5325569 | None:intergenic | 50.0% | |
TTGCACGCAGTTACTGTGTG+CGG | + | chr5_3:5325604-5325623 | Msa0793330:intron | 50.0% | |
TTACTGTGTGCGGTTGGAGT+GGG | + | chr5_3:5325614-5325633 | Msa0793330:intron | 50.0% | |
! | TGCGGCCTTTTTCTACTGCA+GGG | + | chr5_3:5325753-5325772 | Msa0793330:intron | 50.0% |
ACACTGATGTCCCACAGTAG+AGG | - | chr5_3:5326432-5326451 | None:intergenic | 50.0% | |
ACAAAACTTACGGCGTGGTC+CGG | - | chr5_3:5326501-5326520 | None:intergenic | 50.0% | |
GCACACAGGACATGCTGAAA+GGG | - | chr5_3:5326679-5326698 | None:intergenic | 50.0% | |
AGCACACAGGACATGCTGAA+AGG | - | chr5_3:5326680-5326699 | None:intergenic | 50.0% | |
!! | CTAGCTATAGCTTGCTCCAC+AGG | - | chr5_3:5326708-5326727 | None:intergenic | 50.0% |
CGAAGTACAGGAGACTCTGA+TGG | - | chr5_3:5326744-5326763 | None:intergenic | 50.0% | |
TTTCCAAGTGAACCAGAGGG+CGG | + | chr5_3:5326795-5326814 | Msa0793330:CDS | 50.0% | |
!! | TTTTGGTGGATACCCTCCTC+TGG | + | chr5_3:5326824-5326843 | Msa0793330:CDS | 50.0% |
! | GATACCCTCCTCTGGAAGAA+AGG | + | chr5_3:5326832-5326851 | Msa0793330:CDS | 50.0% |
TGCACTCAGTACGCACAAAC+TGG | - | chr5_3:5327206-5327225 | None:intergenic | 50.0% | |
TGCTCCATCACATCTATGCC+AGG | + | chr5_3:5327439-5327458 | Msa0793330:intron | 50.0% | |
TTGGATAGCAGGAGGAGAGT+TGG | + | chr5_3:5327577-5327596 | Msa0793330:CDS | 50.0% | |
GCAGGAGGAGAGTTGGATTA+TGG | + | chr5_3:5327584-5327603 | Msa0793330:CDS | 50.0% | |
CAATAAGGAGAGGCCTCATG+AGG | - | chr5_3:5328872-5328891 | None:intergenic | 50.0% | |
CTCATGAGGCCTCTCCTTAT+TGG | + | chr5_3:5328870-5328889 | Msa0793330:intron | 50.0% | |
TGACAGGGAACAGCCCAATA+AGG | - | chr5_3:5328887-5328906 | None:intergenic | 50.0% | |
TGATGTCTTTGTCGAGGCAG+AGG | + | chr5_3:5329035-5329054 | Msa0793330:CDS | 50.0% | |
ATACGTCTCTATGGTACGCC+TGG | - | chr5_3:5330125-5330144 | None:intergenic | 50.0% | |
GGCGTACCATAGAGACGTAT+TGG | + | chr5_3:5330125-5330144 | Msa0793330:intron | 50.0% | |
GGACGCCGAATTACAACAAC+TGG | - | chr5_3:5330192-5330211 | None:intergenic | 50.0% | |
GTGAAGAAGAATCCTAGGCG+CGG | + | chr5_3:5330252-5330271 | Msa0793330:CDS | 50.0% | |
TGAAGAAGAATCCTAGGCGC+GGG | + | chr5_3:5330253-5330272 | Msa0793330:CDS | 50.0% | |
TCGGCGGTTGGAGTTCGAAT+CGG | - | chr5_3:5324390-5324409 | None:intergenic | 55.0% | |
ATGAACGGAATCTCGGCGGT+TGG | - | chr5_3:5324402-5324421 | None:intergenic | 55.0% | |
GTGGGGTGGAGGGGTAAAAA+TGG | - | chr5_3:5324490-5324509 | None:intergenic | 55.0% | |
!! | GGATTTTGAGTGGGGTGGAG+GGG | - | chr5_3:5324499-5324518 | None:intergenic | 55.0% |
!! | CGGATTTTGAGTGGGGTGGA+GGG | - | chr5_3:5324500-5324519 | None:intergenic | 55.0% |
!! | TCGGATTTTGAGTGGGGTGG+AGG | - | chr5_3:5324501-5324520 | None:intergenic | 55.0% |
CGGTAACGTTTCGCAGGTTC+CGG | + | chr5_3:5324823-5324842 | Msa0793330:CDS | 55.0% | |
ACGCAGTTACTGTGTGCGGT+TGG | + | chr5_3:5325608-5325627 | Msa0793330:intron | 55.0% | |
GTTACTGTGTGCGGTTGGAG+TGG | + | chr5_3:5325613-5325632 | Msa0793330:intron | 55.0% | |
GCCGCCCGATGTTGAATCAA+TGG | + | chr5_3:5325642-5325661 | Msa0793330:intron | 55.0% | |
! | CTGCGGCCTTTTTCTACTGC+AGG | + | chr5_3:5325752-5325771 | Msa0793330:intron | 55.0% |
! | GCGGCCTTTTTCTACTGCAG+GGG | + | chr5_3:5325754-5325773 | Msa0793330:intron | 55.0% |
TGCATTTCCTCCTCCTCCAC+CGG | + | chr5_3:5326460-5326479 | Msa0793330:CDS | 55.0% | |
GTACGTCTTCTATCAGCCGG+TGG | - | chr5_3:5326479-5326498 | None:intergenic | 55.0% | |
CCGGTACGTCTTCTATCAGC+CGG | - | chr5_3:5326482-5326501 | None:intergenic | 55.0% | |
CCGGCTGATAGAAGACGTAC+CGG | + | chr5_3:5326479-5326498 | Msa0793330:CDS | 55.0% | |
GGAGACTCTGATGGGGAACT+TGG | - | chr5_3:5326735-5326754 | None:intergenic | 55.0% | |
CGTCCCTTTCTTCCAGAGGA+GGG | - | chr5_3:5326839-5326858 | None:intergenic | 55.0% | |
! | GAAGCGTCCCTTTCTTCCAG+AGG | - | chr5_3:5326843-5326862 | None:intergenic | 55.0% |
GGTTTAGATGTGGCGACTGC+AGG | + | chr5_3:5327154-5327173 | Msa0793330:intron | 55.0% | |
GTCGAACGGTCTACTCCTGA+AGG | - | chr5_3:5328453-5328472 | None:intergenic | 55.0% | |
! | GGACCGGTTCAGACCTGTTT+AGG | - | chr5_3:5328505-5328524 | None:intergenic | 55.0% |
GGGAACAGCCCAATAAGGAG+AGG | - | chr5_3:5328882-5328901 | None:intergenic | 55.0% | |
ATTTGGGCGCCACAAGAACC+TGG | - | chr5_3:5328980-5328999 | None:intergenic | 55.0% | |
ACCTTCAGGCACATCTGCAG+AGG | - | chr5_3:5329284-5329303 | None:intergenic | 55.0% | |
ACAACAACTGGACGAGGACG+AGG | - | chr5_3:5330180-5330199 | None:intergenic | 55.0% | |
TAGGGAACAGGTGGAAGACG+AGG | - | chr5_3:5330213-5330232 | None:intergenic | 55.0% | |
GGGAGAGGAGATAGGAGATC+AGG | + | chr5_3:5330273-5330292 | Msa0793330:CDS | 55.0% | |
AGTGGGTCCCACTGAGACTC+CGG | - | chr5_3:5324446-5324465 | None:intergenic | 60.0% | |
CTTCTATCAGCCGGTGGAGG+AGG | - | chr5_3:5326473-5326492 | None:intergenic | 60.0% | |
CGTCTTCTATCAGCCGGTGG+AGG | - | chr5_3:5326476-5326495 | None:intergenic | 60.0% | |
CCAAAATCAGAGCCGCCCTC+TGG | - | chr5_3:5326810-5326829 | None:intergenic | 60.0% | |
!! | CCAGAGGGCGGCTCTGATTT+TGG | + | chr5_3:5326807-5326826 | Msa0793330:CDS | 60.0% |
!! | GAGGGCGGCTCTGATTTTGG+TGG | + | chr5_3:5326810-5326829 | Msa0793330:CDS | 60.0% |
GCGTCCCTTTCTTCCAGAGG+AGG | - | chr5_3:5326840-5326859 | None:intergenic | 60.0% | |
TCAAATCCAGTCTGGCGCCC+AGG | - | chr5_3:5327290-5327309 | None:intergenic | 60.0% | |
AGGCAGACTGCAAGGCCTTC+AGG | + | chr5_3:5328435-5328454 | Msa0793330:intron | 60.0% | |
ACAGGTCTGAACCGGTCCCT+TGG | + | chr5_3:5328507-5328526 | Msa0793330:intron | 60.0% | |
CAGGTCTGAACCGGTCCCTT+GGG | + | chr5_3:5328508-5328527 | Msa0793330:intron | 60.0% | |
TGTGCGGAGAGATGTGCCTG+TGG | + | chr5_3:5329223-5329242 | Msa0793330:intron | 60.0% | |
! | GGCACATCTGCAGAGGCACA+AGG | - | chr5_3:5329277-5329296 | None:intergenic | 60.0% |
GCCTCTGCAGATGTGCCTGA+AGG | + | chr5_3:5329280-5329299 | Msa0793330:intron | 60.0% | |
AAGAATCCTAGGCGCGGGAG+AGG | + | chr5_3:5330258-5330277 | Msa0793330:CDS | 60.0% | |
GACTCCGGGGAAGGGTGAAG+AGG | - | chr5_3:5324431-5324450 | None:intergenic | 65.0% | |
ACCCTTCCCCGGAGTCTCAG+TGG | + | chr5_3:5324435-5324454 | Msa0793330:five_prime_UTR | 65.0% | |
CCCACTGAGACTCCGGGGAA+GGG | - | chr5_3:5324439-5324458 | None:intergenic | 65.0% | |
CCCTTCCCCGGAGTCTCAGT+GGG | + | chr5_3:5324436-5324455 | Msa0793330:five_prime_UTR | 65.0% | |
TCCCACTGAGACTCCGGGGA+AGG | - | chr5_3:5324440-5324459 | None:intergenic | 65.0% | |
TGGGTCCCACTGAGACTCCG+GGG | - | chr5_3:5324444-5324463 | None:intergenic | 65.0% | |
GTGGGTCCCACTGAGACTCC+GGG | - | chr5_3:5324445-5324464 | None:intergenic | 65.0% | |
CTATCAGCCGGTGGAGGAGG+AGG | - | chr5_3:5326470-5326489 | None:intergenic | 65.0% | |
! | GAGCCGCCCTCTGGTTCACT+TGG | - | chr5_3:5326801-5326820 | None:intergenic | 65.0% |
ACTGGACGAGGACGAGGACG+AGG | - | chr5_3:5330174-5330193 | None:intergenic | 65.0% | |
CTATCTCCTCTCCCGCGCCT+AGG | - | chr5_3:5330267-5330286 | None:intergenic | 65.0% | |
CTAGGCGCGGGAGAGGAGAT+AGG | + | chr5_3:5330265-5330284 | Msa0793330:CDS | 65.0% | |
AGCAGACCTGGGCGCCAGAC+TGG | + | chr5_3:5327281-5327300 | Msa0793330:CDS | 70.0% | |
GGACGAGGAGGAGGAGGAGG+AGG | - | chr5_3:5330159-5330178 | None:intergenic | 70.0% | |
CGAGGACGAGGAGGAGGAGG+AGG | - | chr5_3:5330162-5330181 | None:intergenic | 70.0% | |
GGACGAGGACGAGGAGGAGG+AGG | - | chr5_3:5330165-5330184 | None:intergenic | 70.0% | |
CGAGGACGAGGACGAGGAGG+AGG | - | chr5_3:5330168-5330187 | None:intergenic | 70.0% | |
GGACGAGGACGAGGACGAGG+AGG | - | chr5_3:5330171-5330190 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_3 | gene | 5324276 | 5330603 | 5324276 | ID=Msa0793330;Name=Msa0793330 |
chr5_3 | mRNA | 5324276 | 5330603 | 5324276 | ID=Msa0793330-mRNA-1;Parent=Msa0793330;Name=Msa0793330-mRNA-1;_AED=0.08;_eAED=0.08;_QI=485|1|1|1|0.88|0.8|10|214|594 |
chr5_3 | exon | 5324276 | 5325010 | 5324276 | ID=Msa0793330-mRNA-1:exon:2039;Parent=Msa0793330-mRNA-1 |
chr5_3 | exon | 5326222 | 5326509 | 5326222 | ID=Msa0793330-mRNA-1:exon:2040;Parent=Msa0793330-mRNA-1 |
chr5_3 | exon | 5326685 | 5326898 | 5326685 | ID=Msa0793330-mRNA-1:exon:2041;Parent=Msa0793330-mRNA-1 |
chr5_3 | exon | 5327268 | 5327377 | 5327268 | ID=Msa0793330-mRNA-1:exon:2042;Parent=Msa0793330-mRNA-1 |
chr5_3 | exon | 5327461 | 5327660 | 5327461 | ID=Msa0793330-mRNA-1:exon:2043;Parent=Msa0793330-mRNA-1 |
chr5_3 | exon | 5327849 | 5327952 | 5327849 | ID=Msa0793330-mRNA-1:exon:2044;Parent=Msa0793330-mRNA-1 |
chr5_3 | exon | 5328981 | 5329171 | 5328981 | ID=Msa0793330-mRNA-1:exon:2045;Parent=Msa0793330-mRNA-1 |
chr5_3 | exon | 5329290 | 5329489 | 5329290 | ID=Msa0793330-mRNA-1:exon:2046;Parent=Msa0793330-mRNA-1 |
chr5_3 | exon | 5330126 | 5330491 | 5330126 | ID=Msa0793330-mRNA-1:exon:2047;Parent=Msa0793330-mRNA-1 |
chr5_3 | exon | 5330528 | 5330603 | 5330528 | ID=Msa0793330-mRNA-1:exon:2048;Parent=Msa0793330-mRNA-1 |
chr5_3 | five_prime_UTR | 5324276 | 5324760 | 5324276 | ID=Msa0793330-mRNA-1:five_prime_utr;Parent=Msa0793330-mRNA-1 |
chr5_3 | CDS | 5324761 | 5325010 | 5324761 | ID=Msa0793330-mRNA-1:cds;Parent=Msa0793330-mRNA-1 |
chr5_3 | CDS | 5326222 | 5326509 | 5326222 | ID=Msa0793330-mRNA-1:cds;Parent=Msa0793330-mRNA-1 |
chr5_3 | CDS | 5326685 | 5326898 | 5326685 | ID=Msa0793330-mRNA-1:cds;Parent=Msa0793330-mRNA-1 |
chr5_3 | CDS | 5327268 | 5327377 | 5327268 | ID=Msa0793330-mRNA-1:cds;Parent=Msa0793330-mRNA-1 |
chr5_3 | CDS | 5327461 | 5327660 | 5327461 | ID=Msa0793330-mRNA-1:cds;Parent=Msa0793330-mRNA-1 |
chr5_3 | CDS | 5327849 | 5327952 | 5327849 | ID=Msa0793330-mRNA-1:cds;Parent=Msa0793330-mRNA-1 |
chr5_3 | CDS | 5328981 | 5329171 | 5328981 | ID=Msa0793330-mRNA-1:cds;Parent=Msa0793330-mRNA-1 |
chr5_3 | CDS | 5329290 | 5329489 | 5329290 | ID=Msa0793330-mRNA-1:cds;Parent=Msa0793330-mRNA-1 |
chr5_3 | CDS | 5330126 | 5330353 | 5330126 | ID=Msa0793330-mRNA-1:cds;Parent=Msa0793330-mRNA-1 |
chr5_3 | three_prime_UTR | 5330354 | 5330491 | 5330354 | ID=Msa0793330-mRNA-1:three_prime_utr;Parent=Msa0793330-mRNA-1 |
chr5_3 | three_prime_UTR | 5330528 | 5330603 | 5330528 | ID=Msa0793330-mRNA-1:three_prime_utr;Parent=Msa0793330-mRNA-1 |
Gene Sequence |
Protein sequence |