AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0793330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0793330 MtrunA17_Chr2g0317511 97.643 594 12 1 1 594 1 592 0.0 1193
Msa0793330 MtrunA17_Chr4g0047251 55.835 557 214 9 39 591 1 529 0.0 598
Msa0793330 MtrunA17_Chr2g0282261 55.888 535 208 12 1 532 1 510 0.0 568
Msa0793330 MtrunA17_Chr8g0361841 46.815 314 153 8 227 533 161 467 7.37e-82 265
Msa0793330 MtrunA17_Chr8g0378731 38.968 349 196 8 181 524 114 450 7.26e-77 252
Msa0793330 MtrunA17_Chr1g0200501 46.557 305 152 7 227 523 395 696 1.77e-75 254
Msa0793330 MtrunA17_Chr1g0154411 39.735 302 160 8 227 522 175 460 4.01e-54 191
Msa0793330 MtrunA17_Chr2g0285981 34.520 281 169 6 227 501 117 388 1.74e-44 164
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0793330 AT1G53040.2 59.325 563 181 13 38 583 2 533 0.0 599
Msa0793330 AT1G53040.1 59.325 563 181 13 38 583 2 533 0.0 599
Msa0793330 AT1G53040.6 59.325 563 181 13 38 583 2 533 0.0 599
Msa0793330 AT1G28240.1 56.818 528 204 10 1 523 1 509 0.0 586
Msa0793330 AT1G53040.3 61.523 499 156 8 38 520 2 480 0.0 577
Msa0793330 AT1G53040.4 61.523 499 156 8 38 520 2 480 0.0 577
Msa0793330 AT1G53040.5 57.773 431 146 8 38 452 2 412 1.06e-154 451
Msa0793330 AT4G09630.2 39.862 434 222 14 108 523 270 682 2.62e-80 267
Msa0793330 AT4G09630.1 39.862 434 222 14 108 523 285 697 4.42e-80 267
Msa0793330 AT2G02910.2 40.369 379 189 12 169 534 105 459 7.97e-80 259
Msa0793330 AT2G02910.1 40.369 379 189 12 169 534 105 459 7.97e-80 259
Msa0793330 AT1G34550.2 46.580 307 149 8 227 523 327 628 1.92e-78 261
Msa0793330 AT1G34550.1 46.580 307 149 8 227 523 421 722 1.01e-77 261
Msa0793330 AT4G38500.1 41.349 341 180 10 178 512 107 433 1.88e-71 238
Msa0793330 AT5G42660.1 38.926 298 168 7 227 522 168 453 5.77e-60 207
Msa0793330 AT5G46220.1 36.396 283 162 8 227 501 118 390 1.19e-43 162

Find 201 sgRNAs with CRISPR-Local

Find 448 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGAGTATCAAAATGTTTC+TGG 0.131575 5_3:+5329438 Msa0793330:CDS
CCAACATCCGATATTCAATT+TGG 0.161998 5_3:+5327880 Msa0793330:CDS
TATGAGAAATGCCAGTATTT+TGG 0.170087 5_3:+5327558 Msa0793330:CDS
CAACTCCTCTCTTTCTCTTT+GGG 0.171333 5_3:-5324884 None:intergenic
ATCAAGACTAAAATAAAATT+TGG 0.222129 5_3:-5330338 None:intergenic
GCAGGAGGAGAGTTGGATTA+TGG 0.230597 5_3:+5327584 Msa0793330:CDS
ACAACTCCTCTCTTTCTCTT+TGG 0.232114 5_3:-5324885 None:intergenic
CCAGAGGGCGGCTCTGATTT+TGG 0.239298 5_3:+5326807 Msa0793330:CDS
CAAATCTGTTTACCTGCTTA+TGG 0.239991 5_3:+5329335 Msa0793330:CDS
ATCAACGCCTATAACTTTAT+AGG 0.256052 5_3:-5326273 None:intergenic
TACCTTTCAAGAATTTGATA+TGG 0.259862 5_3:-5327933 None:intergenic
CTTAGTACCTATAAAGTTAT+AGG 0.264807 5_3:+5326266 Msa0793330:CDS
ATTGTTGCATCTGCCATATT+TGG 0.266284 5_3:+5327356 Msa0793330:CDS
ATTCTGTGCAAAAGAAGTTT+TGG 0.269371 5_3:-5327852 None:intergenic
ATTTACAATTAAAACATAAA+AGG 0.286362 5_3:-5330484 None:intergenic
ATATTCCATACGCTGATTCT+AGG 0.289829 5_3:+5327626 Msa0793330:CDS
TTGTTCTTACCACTAGTTAT+AGG 0.290716 5_3:-5329159 None:intergenic
ACTCTTGACAGATTTGTAAA+AGG 0.291042 5_3:+5327257 Msa0793330:intron
AACAATAGAAACTAAGTTAA+AGG 0.297917 5_3:+5326298 Msa0793330:CDS
GTCATAAATTGTACCAAATA+TGG 0.301494 5_3:-5327369 None:intergenic
CAGAGGCTTGTTAGTAGTAT+AGG 0.308587 5_3:-5330229 None:intergenic
TGCTTGTTTACTGATGTTCC+TGG 0.308633 5_3:-5327485 None:intergenic
TGTTACAGTGGTGGGTTTGA+TGG 0.316135 5_3:+5324708 Msa0793330:five_prime_UTR
CAGGTAAACAGATTTGTAAT+TGG 0.326045 5_3:-5329328 None:intergenic
CGATATTCAATTTGGATTGA+TGG 0.327205 5_3:+5327888 Msa0793330:CDS
CTTTCTCTTTGGGGTTATAA+AGG 0.333461 5_3:-5324874 None:intergenic
GAAATGGCAAAAGTAGCATT+TGG 0.334302 5_3:-5328994 None:intergenic
TTGAAATCAAATGTAGCTTC+TGG 0.336024 5_3:+5324550 Msa0793330:five_prime_UTR
GAATCAGAGAATTGGGGAAT+TGG 0.340394 5_3:-5324363 None:intergenic
CGGTAACGTTTCGCAGGTTC+CGG 0.346495 5_3:+5324823 Msa0793330:CDS
GGGAAACCCACGAATGATTT+CGG 0.350801 5_3:-5324517 None:intergenic
ATGGTTTAACTCATTATTCC+AGG 0.351362 5_3:+5329127 Msa0793330:CDS
CAAATTGAATATCGGATGTT+GGG 0.357092 5_3:-5327879 None:intergenic
AATCGGAGAATCAGAGAATT+GGG 0.364490 5_3:-5324370 None:intergenic
CGAGGACGAGGAGGAGGAGG+AGG 0.370034 5_3:-5330159 None:intergenic
GAATCGGAGAATCAGAGAAT+TGG 0.373549 5_3:-5324371 None:intergenic
CTCGTCCAGTTGTTGTAATT+CGG 0.377263 5_3:+5330184 Msa0793330:CDS
AATCAGAGAATTGGGGAATT+GGG 0.381452 5_3:-5324362 None:intergenic
TAACCCACAATGCACTTTCA+TGG 0.381800 5_3:-5326880 None:intergenic
AGAGATGACTGGAGTGTCAT+TGG 0.383636 5_3:+5324757 Msa0793330:exon
AGCAGACCTGGGCGCCAGAC+TGG 0.385517 5_3:+5327281 Msa0793330:CDS
ACCTTTCAAGAATTTGATAT+GGG 0.390461 5_3:-5327932 None:intergenic
AATTATATGAAGATCGTAAA+GGG 0.390591 5_3:-5326385 None:intergenic
TCGTGTATCTTCAATTTCAT+TGG 0.390782 5_3:-5326234 None:intergenic
GCAGAGGCTAATAAAGTTGC+TGG 0.394494 5_3:+5329051 Msa0793330:CDS
CATCAATCCAAATTGAATAT+CGG 0.397863 5_3:-5327887 None:intergenic
GAAGATCGTAAAGGGGAAAC+AGG 0.398793 5_3:-5326377 None:intergenic
ATGCTTCTCATGCTTCTTTG+TGG 0.400181 5_3:+5324947 Msa0793330:CDS
TGTTCTCCAATACGTCTCTA+TGG 0.400680 5_3:-5330131 None:intergenic
TTGTATATTTGTCGTCATCT+TGG 0.402404 5_3:+5324908 Msa0793330:CDS
GGACGCCGAATTACAACAAC+TGG 0.408307 5_3:-5330189 None:intergenic
AGTGGGTCCCACTGAGACTC+CGG 0.417933 5_3:-5324443 None:intergenic
AGAGGCTTGTTAGTAGTATA+GGG 0.418244 5_3:-5330228 None:intergenic
TATAAAGTTATAGGCGTTGA+TGG 0.419422 5_3:+5326275 Msa0793330:CDS
TGCATTTCCTCCTCCTCCAC+CGG 0.419731 5_3:+5326460 Msa0793330:CDS
TGAAATCAAATGTAGCTTCT+GGG 0.422798 5_3:+5324551 Msa0793330:five_prime_UTR
AATCAGCGTATGGAATATTC+CGG 0.426989 5_3:-5327621 None:intergenic
ACAAAACTTACGGCGTGGTC+CGG 0.429802 5_3:-5326498 None:intergenic
GAGGCGTAACTTTGTAATAC+AGG 0.430563 5_3:+5329468 Msa0793330:CDS
CACGGTAAGAGACAAAATAA+TGG 0.431368 5_3:+5329405 Msa0793330:CDS
GGACGAGGACGAGGAGGAGG+AGG 0.433669 5_3:-5330162 None:intergenic
GGAGACTCTGATGGGGAACT+TGG 0.434048 5_3:-5326732 None:intergenic
AAATGGCAAAAGTAGCATTT+GGG 0.439586 5_3:-5328993 None:intergenic
CTATAACTTTATAGGTACTA+AGG 0.440362 5_3:-5326265 None:intergenic
GGGAATTGGGAGATGGAAGA+TGG 0.441058 5_3:-5324349 None:intergenic
CCTCCTGCTATCCAAAATAC+TGG 0.441277 5_3:-5327569 None:intergenic
CTAGGCGCGGGAGAGGAGAT+AGG 0.442545 5_3:+5330265 Msa0793330:CDS
TCCCACTGAGACTCCGGGGA+AGG 0.446054 5_3:-5324437 None:intergenic
TTGGATAGCAGGAGGAGAGT+TGG 0.453109 5_3:+5327577 Msa0793330:CDS
CGAGGACGAGGACGAGGAGG+AGG 0.453236 5_3:-5330165 None:intergenic
CGATCTTCATATAATTTGAA+AGG 0.456833 5_3:+5326392 Msa0793330:CDS
GCGTCTATAGTGTCTTGAAA+TGG 0.457326 5_3:-5329010 None:intergenic
AAATTGAACTTGGCGATCAA+TGG 0.458082 5_3:-5329091 None:intergenic
AAATAATGGCAAAAGTTGAT+TGG 0.458296 5_3:+5329419 Msa0793330:CDS
CTAATGATAACACAACCTTC+AGG 0.460865 5_3:-5329295 None:intergenic
CTTCTACGTCGTTGACAAGT+AGG 0.463711 5_3:+5326330 Msa0793330:CDS
GATACCCTCCTCTGGAAGAA+AGG 0.465155 5_3:+5326832 Msa0793330:CDS
TATGGAGAATCATTGTTGTC+CGG 0.466157 5_3:+5327602 Msa0793330:CDS
GGCGTACCATAGAGACGTAT+TGG 0.468562 5_3:+5330125 Msa0793330:intron
GTGTCATTGGGTCTACGAAC+AGG 0.469533 5_3:+5324770 Msa0793330:CDS
CTAGCTATAGCTTGCTCCAC+AGG 0.472659 5_3:-5326705 None:intergenic
TTGATTGTTGTTACAGTGGT+GGG 0.472782 5_3:+5324700 Msa0793330:five_prime_UTR
GGGAGAGGAGATAGGAGATC+AGG 0.476344 5_3:+5330273 Msa0793330:CDS
GAGGAGGAGGAAATGCAAAA+TGG 0.477057 5_3:-5326454 None:intergenic
CCAAATTGAATATCGGATGT+TGG 0.483520 5_3:-5327880 None:intergenic
ATTTCCTCTTCACCCTTCCC+CGG 0.486772 5_3:+5324424 Msa0793330:five_prime_UTR
CTTCTATCAGCCGGTGGAGG+AGG 0.487564 5_3:-5326470 None:intergenic
CTATCTCCTCTCCCGCGCCT+AGG 0.488221 5_3:-5330264 None:intergenic
GCTTGTTTACTGATGTTCCT+GGG 0.488794 5_3:-5327484 None:intergenic
AAGAATCCTAGGCGCGGGAG+AGG 0.488826 5_3:+5330258 Msa0793330:CDS
GAGCCGCCCTCTGGTTCACT+TGG 0.488920 5_3:-5326798 None:intergenic
GGATTGAGGTGTAGCGTGAA+TGG 0.489165 5_3:-5324316 None:intergenic
CTATCAGCCGGTGGAGGAGG+AGG 0.489293 5_3:-5326467 None:intergenic
GTGGGTCCCACTGAGACTCC+GGG 0.490349 5_3:-5324442 None:intergenic
TGAATGGAGGGAAGAGAGAA+TGG 0.492726 5_3:-5324300 None:intergenic
TACGCTGATTCTAGGCGTAA+TGG 0.493420 5_3:+5327634 Msa0793330:CDS
AGACCATGAAAGTGCATTGT+GGG 0.494240 5_3:+5326877 Msa0793330:CDS
GATATTCAATTTGGATTGAT+GGG 0.495126 5_3:+5327889 Msa0793330:CDS
CATCAAAATCAAATCCAGTC+TGG 0.495263 5_3:-5327295 None:intergenic
TGATGTCTTTGTCGAGGCAG+AGG 0.497324 5_3:+5329035 Msa0793330:CDS
GAAATCAATGAACGGAATCT+CGG 0.498803 5_3:-5324406 None:intergenic
GAGATGACTGGAGTGTCATT+GGG 0.500498 5_3:+5324758 Msa0793330:exon
TTGTTAGTAGTATAGGGAAC+AGG 0.504095 5_3:-5330222 None:intergenic
AACTCCTCTCTTTCTCTTTG+GGG 0.506867 5_3:-5324883 None:intergenic
CCCACTGAGACTCCGGGGAA+GGG 0.507237 5_3:-5324436 None:intergenic
TTTGTAAAAGGAAGCAGACC+TGG 0.508151 5_3:+5327269 Msa0793330:CDS
TATGTGAGAGTGCGAAGTAC+AGG 0.510947 5_3:-5326753 None:intergenic
CCCTTCCCCGGAGTCTCAGT+GGG 0.512104 5_3:+5324436 Msa0793330:five_prime_UTR
CAGATGCAACAATGATATCA+TGG 0.513495 5_3:-5327346 None:intergenic
TGAGGAAGACCTCTTAGAGT+TGG 0.514183 5_3:+5327316 Msa0793330:CDS
ACAACAACTGGACGAGGACG+AGG 0.517613 5_3:-5330177 None:intergenic
TGGTGGGTTTGATGGTGAAA+AGG 0.518260 5_3:+5324716 Msa0793330:five_prime_UTR
CCAAAATCAGAGCCGCCCTC+TGG 0.518922 5_3:-5326807 None:intergenic
GGTATTGATAAAATTGAACT+TGG 0.519689 5_3:-5329101 None:intergenic
TGGAAACTTGATCGGAAAAG+AGG 0.521482 5_3:-5324467 None:intergenic
TCAAATCCAGTCTGGCGCCC+AGG 0.522524 5_3:-5327287 None:intergenic
ATTGAAAGGAGAGAGATGAC+TGG 0.525842 5_3:+5324746 Msa0793330:exon
TTATATCATCCAGGTTCTTG+TGG 0.528214 5_3:+5328968 Msa0793330:intron
CTATACTACTAACAAGCCTC+TGG 0.528643 5_3:+5330230 Msa0793330:CDS
TTTGATTTCAAGCGATGAGA+AGG 0.529884 5_3:-5324538 None:intergenic
TTTGATTGTTGTTACAGTGG+TGG 0.530497 5_3:+5324699 Msa0793330:five_prime_UTR
CTTGATCGGAAAAGAGGAAG+TGG 0.531481 5_3:-5324461 None:intergenic
AAATTATATGAAGATCGTAA+AGG 0.535453 5_3:-5326386 None:intergenic
ATTTGTCGTCATCTTGGTCG+TGG 0.536035 5_3:+5324914 Msa0793330:CDS
CGTCTTCTATCAGCCGGTGG+AGG 0.539441 5_3:-5326473 None:intergenic
CTAGGATTCTTCTTCACCAG+AGG 0.540636 5_3:-5330246 None:intergenic
AGAATTGGGGAATTGGGAGA+TGG 0.543927 5_3:-5324356 None:intergenic
ATGGAGATGGTGATGGATTG+AGG 0.544586 5_3:-5324330 None:intergenic
ACTGGACGAGGACGAGGACG+AGG 0.546361 5_3:-5330171 None:intergenic
CGAAGTACAGGAGACTCTGA+TGG 0.547259 5_3:-5326741 None:intergenic
ATGAACGGAATCTCGGCGGT+TGG 0.549569 5_3:-5324399 None:intergenic
TCATCAATGAACATATAGAA+AGG 0.552097 5_3:-5327520 None:intergenic
CTCTGGTGAAGAAGAATCCT+AGG 0.552954 5_3:+5330247 Msa0793330:CDS
GAAATCAAATGTAGCTTCTG+GGG 0.554318 5_3:+5324552 Msa0793330:five_prime_UTR
TACAATTAAAACATAAAAGG+AGG 0.554568 5_3:-5330481 None:intergenic
ACCCATATCAAATTCTTGAA+AGG 0.556489 5_3:+5327931 Msa0793330:CDS
GAAGTACAGGAGACTCTGAT+GGG 0.558730 5_3:-5326740 None:intergenic
GGTACTGATCCAACTCTAAG+AGG 0.559165 5_3:-5327325 None:intergenic
ATGGAAGATGGAGATGGTGA+TGG 0.559399 5_3:-5324337 None:intergenic
GCCTCTGCAGATGTGCCTGA+AGG 0.559588 5_3:+5329280 Msa0793330:intron
AGTTATAGGAAGCTTAGCCC+TGG 0.559911 5_3:-5329145 None:intergenic
TCAAAACGGTAACGTTTCGC+AGG 0.562363 5_3:+5324817 Msa0793330:CDS
AACTTCATTGAACCATAAGC+AGG 0.563277 5_3:-5329347 None:intergenic
ATACCCTCCTCTGGAAGAAA+GGG 0.563454 5_3:+5326833 Msa0793330:CDS
TCTCTGCAGTTGATTCAAAA+CGG 0.563566 5_3:+5324803 Msa0793330:CDS
GAAAAGGAGATGAAATTGAA+AGG 0.566132 5_3:+5324732 Msa0793330:five_prime_UTR
CCGGTACGTCTTCTATCAGC+CGG 0.566719 5_3:-5326479 None:intergenic
ACCCTTCCCCGGAGTCTCAG+TGG 0.569276 5_3:+5324435 Msa0793330:five_prime_UTR
TGGTTTAACTCATTATTCCA+GGG 0.573563 5_3:+5329128 Msa0793330:CDS
AAAAGGATCTTCCTCTACTG+TGG 0.574720 5_3:+5326418 Msa0793330:CDS
TCAAAATCCGAAATCATTCG+TGG 0.576868 5_3:+5324510 Msa0793330:five_prime_UTR
ATAACCCCAAAGAGAAAGAG+AGG 0.578050 5_3:+5324879 Msa0793330:CDS
TTGATTTCAAGCGATGAGAA+GGG 0.579782 5_3:-5324537 None:intergenic
TCGGCGGTTGGAGTTCGAAT+CGG 0.580103 5_3:-5324387 None:intergenic
AGATTTGATTGTTGTTACAG+TGG 0.581260 5_3:+5324696 Msa0793330:five_prime_UTR
GGTCTACGAACAGGTAGCTA+TGG 0.582952 5_3:+5324779 Msa0793330:CDS
TCCTGTGTGCTATATTCCTG+TGG 0.583338 5_3:+5326689 Msa0793330:CDS
TGAGGTGTAGCGTGAATGGA+GGG 0.584497 5_3:-5324312 None:intergenic
ATGATGTAATACAGCAGCCC+AGG 0.585632 5_3:+5327467 Msa0793330:CDS
TGAAGAAGAATCCTAGGCGC+GGG 0.587189 5_3:+5330253 Msa0793330:CDS
GAAGCTCTACGAACAAGCAC+CGG 0.587738 5_3:-5324842 None:intergenic
CGAATTACAACAACTGGACG+AGG 0.587930 5_3:-5330183 None:intergenic
TGATTCTAGGCGTAATGGAA+AGG 0.589215 5_3:+5327639 Msa0793330:CDS
AAAGGATCTTCCTCTACTGT+GGG 0.590284 5_3:+5326419 Msa0793330:CDS
TTGAGGTGTAGCGTGAATGG+AGG 0.592594 5_3:-5324313 None:intergenic
GCGTCCCTTTCTTCCAGAGG+AGG 0.594997 5_3:-5326837 None:intergenic
CGTCCCTTTCTTCCAGAGGA+GGG 0.599989 5_3:-5326836 None:intergenic
GAGACCATGAAAGTGCATTG+TGG 0.600387 5_3:+5326876 Msa0793330:CDS
CAAAATCCGAAATCATTCGT+GGG 0.600820 5_3:+5324511 Msa0793330:five_prime_UTR
TATAACTTTATAGGTACTAA+GGG 0.601886 5_3:-5326264 None:intergenic
GCTAAGCTTCCTATAACTAG+TGG 0.604377 5_3:+5329150 Msa0793330:CDS
GACTCCGGGGAAGGGTGAAG+AGG 0.604662 5_3:-5324428 None:intergenic
AAATGTTTCTGGATTGTGAG+AGG 0.605555 5_3:+5329449 Msa0793330:CDS
GAAGCGTCCCTTTCTTCCAG+AGG 0.614144 5_3:-5326840 None:intergenic
ACGCTTTGATGTCTTTGTCG+AGG 0.624568 5_3:+5329029 Msa0793330:CDS
AAATTGAATATCGGATGTTG+GGG 0.626381 5_3:-5327878 None:intergenic
GGCTGCTTTACACTTTACAA+AGG 0.627522 5_3:+5324989 Msa0793330:CDS
ACTGATCTCTAGAAGTAAAG+CGG 0.629422 5_3:-5329372 None:intergenic
TTGTAAAAGGAAGCAGACCT+GGG 0.632901 5_3:+5327270 Msa0793330:CDS
TTAGTAGTATAGGGAACAGG+TGG 0.633478 5_3:-5330219 None:intergenic
TGGGAGATGGAAGATGGAGA+TGG 0.635417 5_3:-5324343 None:intergenic
TTACGCCTAGAATCAGCGTA+TGG 0.636495 5_3:-5327631 None:intergenic
ATTATATGAAGATCGTAAAG+GGG 0.638021 5_3:-5326384 None:intergenic
ACACTGATGTCCCACAGTAG+AGG 0.638638 5_3:-5326429 None:intergenic
GGAACATCAGTAAACAAGCA+AGG 0.641755 5_3:+5327488 Msa0793330:CDS
GTGAAGAAGAATCCTAGGCG+CGG 0.647847 5_3:+5330252 Msa0793330:CDS
GTGAAGAGGAAATCAATGAA+CGG 0.649413 5_3:-5324414 None:intergenic
TAGGGAACAGGTGGAAGACG+AGG 0.652873 5_3:-5330210 None:intergenic
GGACGAGGACGAGGACGAGG+AGG 0.654183 5_3:-5330168 None:intergenic
ATCGGAGAATCAGAGAATTG+GGG 0.655976 5_3:-5324369 None:intergenic
TATGTTTCCAAGTGAACCAG+AGG 0.659114 5_3:+5326791 Msa0793330:CDS
CCGGCTGATAGAAGACGTAC+CGG 0.661574 5_3:+5326479 Msa0793330:CDS
TTGATCGGAAAAGAGGAAGT+GGG 0.664244 5_3:-5324460 None:intergenic
GTACGTCTTCTATCAGCCGG+TGG 0.665787 5_3:-5326476 None:intergenic
TTTCCAAGTGAACCAGAGGG+CGG 0.677607 5_3:+5326795 Msa0793330:CDS
ATGTTTCCAAGTGAACCAGA+GGG 0.698530 5_3:+5326792 Msa0793330:CDS
AATAATGAGTTAAACCATCG+TGG 0.700929 5_3:-5329122 None:intergenic
ATCAATGAACGGAATCTCGG+CGG 0.703651 5_3:-5324403 None:intergenic
TGGGTCCCACTGAGACTCCG+GGG 0.710691 5_3:-5324441 None:intergenic
TCCACAGGAATATAGCACAC+AGG 0.715049 5_3:-5326690 None:intergenic
AAGTACAGGAGACTCTGATG+GGG 0.744993 5_3:-5326739 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGTTATATTAATTTCTAAA+GGG - chr5_3:5326008-5326027 None:intergenic 10.0%
!! TTAGTTATATTAATTTCTAA+AGG - chr5_3:5326009-5326028 None:intergenic 10.0%
!! TATTTAAAAGTGAAAAAAAA+TGG - chr5_3:5329550-5329569 None:intergenic 10.0%
!! ATTTACAATTAAAACATAAA+AGG - chr5_3:5330487-5330506 None:intergenic 10.0%
!! ATTTACAATTAAAACATAAA+AGG - chr5_3:5330487-5330506 None:intergenic 10.0%
!! TTTCTATCATTAAATCATAT+CGG + chr5_3:5325099-5325118 Msa0793330:intron 15.0%
!! ATTATATTCATAATTTGATC+TGG - chr5_3:5325211-5325230 None:intergenic 15.0%
!! AGATCAAATTATGAATATAA+TGG + chr5_3:5325210-5325229 Msa0793330:intron 15.0%
!!! TTAAACTAGTTTTGTAATAT+TGG + chr5_3:5326083-5326102 Msa0793330:intron 15.0%
!! TATAATTTGAAAGGAAAAAA+AGG + chr5_3:5326401-5326420 Msa0793330:CDS 15.0%
!!! TTTTTAATTTTCTCATAACT+TGG + chr5_3:5326921-5326940 Msa0793330:intron 15.0%
!!! TTGAAATTTGATAGTATTTT+TGG + chr5_3:5327709-5327728 Msa0793330:intron 15.0%
!! TTTGTAAGTTTGTAATAAAT+AGG + chr5_3:5328587-5328606 Msa0793330:intron 15.0%
!!! CTCAATTTTCTAAAAATAAT+TGG + chr5_3:5329607-5329626 Msa0793330:intron 15.0%
!! AAAAATATAGACTAAAAACA+AGG - chr5_3:5329757-5329776 None:intergenic 15.0%
!!! ATAAAGAATTTTTATGTTGT+TGG + chr5_3:5330083-5330102 Msa0793330:intron 15.0%
!! ATCAAGACTAAAATAAAATT+TGG - chr5_3:5330341-5330360 None:intergenic 15.0%
!!! TTATTGTTTTCAAGAGATTT+TGG + chr5_3:5324667-5324686 Msa0793330:five_prime_UTR 20.0%
!! ACAAATCACTATATATAGTA+AGG + chr5_3:5325162-5325181 Msa0793330:intron 20.0%
!! TTGTCAAATTATGAATATAG+CGG + chr5_3:5325252-5325271 Msa0793330:intron 20.0%
!!! CAACAAAATATTTCTATCTT+TGG - chr5_3:5325868-5325887 None:intergenic 20.0%
!!! CAAAGATAGAAATATTTTGT+TGG + chr5_3:5325866-5325885 Msa0793330:intron 20.0%
!! ACATGTTAAGAATCTAAAAA+TGG - chr5_3:5325960-5325979 None:intergenic 20.0%
!! TATAACTTTATAGGTACTAA+GGG - chr5_3:5326267-5326286 None:intergenic 20.0%
!! AACAATAGAAACTAAGTTAA+AGG + chr5_3:5326298-5326317 Msa0793330:CDS 20.0%
!! AATTATATGAAGATCGTAAA+GGG - chr5_3:5326388-5326407 None:intergenic 20.0%
!! AAATTATATGAAGATCGTAA+AGG - chr5_3:5326389-5326408 None:intergenic 20.0%
!! ATACAACAAAACAAAACTTA+CGG - chr5_3:5326511-5326530 None:intergenic 20.0%
!! GTAAGTTAATAATGAAAACA+AGG - chr5_3:5326545-5326564 None:intergenic 20.0%
!! CTGTAAAAACAAATTCTTAT+GGG - chr5_3:5326993-5327012 None:intergenic 20.0%
!! TCTGTAAAAACAAATTCTTA+TGG - chr5_3:5326994-5327013 None:intergenic 20.0%
!!! AGAATTTGTTTTTACAGAAA+TGG + chr5_3:5326996-5327015 Msa0793330:intron 20.0%
!!! ACTTTTATAGAAAATACCAA+GGG - chr5_3:5328224-5328243 None:intergenic 20.0%
!!! AACTTTTATAGAAAATACCA+AGG - chr5_3:5328225-5328244 None:intergenic 20.0%
!!! GGTATTTTCTATAAAAGTTT+TGG + chr5_3:5328226-5328245 Msa0793330:intron 20.0%
!! TTAAAAGTGAAAATCGAAAT+TGG + chr5_3:5329855-5329874 Msa0793330:intron 20.0%
!!! AATTTGTTTCCTTTTATCAA+AGG - chr5_3:5329925-5329944 None:intergenic 20.0%
!! TTTATTTCAAAGAACAAATG+AGG - chr5_3:5330068-5330087 None:intergenic 20.0%
!!! TTTTGGTTACTTTTTTAACT+CGG + chr5_3:5330376-5330395 Msa0793330:three_prime_UTR 20.0%
!! TACAATTAAAACATAAAAGG+AGG - chr5_3:5330484-5330503 None:intergenic 20.0%
!! TACAATTAAAACATAAAAGG+AGG - chr5_3:5330484-5330503 None:intergenic 20.0%
! AGCCAAATACAAAAATGAAA+AGG - chr5_3:5324973-5324992 None:intergenic 25.0%
!! GTTTCTCTTATAGTTTTTCT+AGG - chr5_3:5325352-5325371 None:intergenic 25.0%
! AGATTTAGAGATTAATGAGT+TGG + chr5_3:5325381-5325400 Msa0793330:intron 25.0%
!! TAATGAGTTGGATCAAAATA+TGG + chr5_3:5325393-5325412 Msa0793330:intron 25.0%
! TGGTTTATGATAGAACATTA+CGG + chr5_3:5325413-5325432 Msa0793330:intron 25.0%
! CTAGTTTAATATATATGCAC+AGG - chr5_3:5326072-5326091 None:intergenic 25.0%
! TATCTAATCTGTATGTTTCA+TGG + chr5_3:5326170-5326189 Msa0793330:intron 25.0%
! CTATAACTTTATAGGTACTA+AGG - chr5_3:5326268-5326287 None:intergenic 25.0%
! CTTAGTACCTATAAAGTTAT+AGG + chr5_3:5326266-5326285 Msa0793330:CDS 25.0%
! TAGGCATAAAAATTCATTCA+GGG + chr5_3:5326349-5326368 Msa0793330:CDS 25.0%
! ATTATATGAAGATCGTAAAG+GGG - chr5_3:5326387-5326406 None:intergenic 25.0%
! CGATCTTCATATAATTTGAA+AGG + chr5_3:5326392-5326411 Msa0793330:CDS 25.0%
! GTCATAAATTGTACCAAATA+TGG - chr5_3:5327372-5327391 None:intergenic 25.0%
! TCATCAATGAACATATAGAA+AGG - chr5_3:5327523-5327542 None:intergenic 25.0%
! AGTGTGTAACTTATTATGTA+TGG + chr5_3:5327789-5327808 Msa0793330:intron 25.0%
! CATCAATCCAAATTGAATAT+CGG - chr5_3:5327890-5327909 None:intergenic 25.0%
! GATATTCAATTTGGATTGAT+GGG + chr5_3:5327889-5327908 Msa0793330:CDS 25.0%
! ACCTTTCAAGAATTTGATAT+GGG - chr5_3:5327935-5327954 None:intergenic 25.0%
! TACCTTTCAAGAATTTGATA+TGG - chr5_3:5327936-5327955 None:intergenic 25.0%
! TCAAATTCTTGAAAGGTAAA+AGG + chr5_3:5327938-5327957 Msa0793330:intron 25.0%
! AAATAAACCCTCTAATTGTA+TGG - chr5_3:5328088-5328107 None:intergenic 25.0%
! GTGTAATATTTCTTAGTTAG+TGG - chr5_3:5328475-5328494 None:intergenic 25.0%
! GTAATAAATAGGACAGTTAA+AGG + chr5_3:5328598-5328617 Msa0793330:intron 25.0%
! AAAGGAAAAATAGTTTAGTC+AGG + chr5_3:5328616-5328635 Msa0793330:intron 25.0%
!! AAAATAGTTTAGTCAGGTTT+TGG + chr5_3:5328622-5328641 Msa0793330:intron 25.0%
!!! GGTATTGATAAAATTGAACT+TGG - chr5_3:5329104-5329123 None:intergenic 25.0%
!! AAATAATGGCAAAAGTTGAT+TGG + chr5_3:5329419-5329438 Msa0793330:CDS 25.0%
! AGAAAACAATTTCTCAAATC+GGG - chr5_3:5329702-5329721 None:intergenic 25.0%
! CAGAAAACAATTTCTCAAAT+CGG - chr5_3:5329703-5329722 None:intergenic 25.0%
! ATGTACAAACCTTTGATAAA+AGG + chr5_3:5329913-5329932 Msa0793330:intron 25.0%
! AAATGAGGAAAGAAAAAAGA+AGG - chr5_3:5330053-5330072 None:intergenic 25.0%
!!! TTTGGTTACTTTTTTAACTC+GGG + chr5_3:5330377-5330396 Msa0793330:three_prime_UTR 25.0%
!!! TTTTCTTTCCCTTTTGAAAA+AGG - chr5_3:5330575-5330594 None:intergenic 25.0%
! TTCAAAAGGGAAAGAAAAAA+AGG + chr5_3:5330577-5330596 Msa0793330:three_prime_UTR 25.0%
! TCAAAAGGGAAAGAAAAAAA+GGG + chr5_3:5330578-5330597 Msa0793330:three_prime_UTR 25.0%
GGTAAAAATGGAAACTTGAT+CGG - chr5_3:5324478-5324497 None:intergenic 30.0%
!! AATGATTTCGGATTTTGAGT+GGG - chr5_3:5324508-5324527 None:intergenic 30.0%
TTGAAATCAAATGTAGCTTC+TGG + chr5_3:5324550-5324569 Msa0793330:five_prime_UTR 30.0%
TGAAATCAAATGTAGCTTCT+GGG + chr5_3:5324551-5324570 Msa0793330:five_prime_UTR 30.0%
! AGATTTGATTGTTGTTACAG+TGG + chr5_3:5324696-5324715 Msa0793330:five_prime_UTR 30.0%
GAAAAGGAGATGAAATTGAA+AGG + chr5_3:5324732-5324751 Msa0793330:five_prime_UTR 30.0%
TTGTATATTTGTCGTCATCT+TGG + chr5_3:5324908-5324927 Msa0793330:CDS 30.0%
!! GGCCTTTTCATTTTTGTATT+TGG + chr5_3:5324968-5324987 Msa0793330:CDS 30.0%
TATAGCCACTATATGTAGTA+AGG + chr5_3:5325278-5325297 Msa0793330:intron 30.0%
!!! GGTTAGTACTGATTTTATGA+AGG + chr5_3:5325673-5325692 Msa0793330:intron 30.0%
GACGAACATAAAACATCTAT+GGG - chr5_3:5325788-5325807 None:intergenic 30.0%
!! TCGTCGAGATATTTTAGAAA+TGG + chr5_3:5325803-5325822 Msa0793330:intron 30.0%
!! CGTCGAGATATTTTAGAAAT+GGG + chr5_3:5325804-5325823 Msa0793330:intron 30.0%
AAACCAATCATATCTCATCA+TGG - chr5_3:5326038-5326057 None:intergenic 30.0%
TCGTGTATCTTCAATTTCAT+TGG - chr5_3:5326237-5326256 None:intergenic 30.0%
ATCAACGCCTATAACTTTAT+AGG - chr5_3:5326276-5326295 None:intergenic 30.0%
!! TATAAAGTTATAGGCGTTGA+TGG + chr5_3:5326275-5326294 Msa0793330:CDS 30.0%
GTAGGCATAAAAATTCATTC+AGG + chr5_3:5326348-5326367 Msa0793330:CDS 30.0%
AAATTCTTATGGGACACTAA+TGG - chr5_3:5326983-5327002 None:intergenic 30.0%
TGTCTCTACTTCATCAAATT+GGG - chr5_3:5327110-5327129 None:intergenic 30.0%
ATGTCTCTACTTCATCAAAT+TGG - chr5_3:5327111-5327130 None:intergenic 30.0%
TGTGTGTCAAATGTGATAAA+AGG - chr5_3:5327238-5327257 None:intergenic 30.0%
ACTCTTGACAGATTTGTAAA+AGG + chr5_3:5327257-5327276 Msa0793330:intron 30.0%
GGACAAAACAATATGTAGAT+CGG - chr5_3:5327400-5327419 None:intergenic 30.0%
CAATGAGAAACAGAAAACAA+AGG - chr5_3:5327421-5327440 None:intergenic 30.0%
TGTATTACATCATAGTTTCC+TGG - chr5_3:5327460-5327479 None:intergenic 30.0%
! TATGAGAAATGCCAGTATTT+TGG + chr5_3:5327558-5327577 Msa0793330:CDS 30.0%
GTGGCATGATATTAGAAATA+GGG - chr5_3:5327742-5327761 None:intergenic 30.0%
TATCGTACTCATTATATCGT+AGG - chr5_3:5327764-5327783 None:intergenic 30.0%
! ATTCTGTGCAAAAGAAGTTT+TGG - chr5_3:5327855-5327874 None:intergenic 30.0%
AAATTGAATATCGGATGTTG+GGG - chr5_3:5327881-5327900 None:intergenic 30.0%
CAAATTGAATATCGGATGTT+GGG - chr5_3:5327882-5327901 None:intergenic 30.0%
CGATATTCAATTTGGATTGA+TGG + chr5_3:5327888-5327907 Msa0793330:CDS 30.0%
ACCCATATCAAATTCTTGAA+AGG + chr5_3:5327931-5327950 Msa0793330:CDS 30.0%
AAAATCAGCCATACAATTAG+AGG + chr5_3:5328077-5328096 Msa0793330:intron 30.0%
AAATCAGCCATACAATTAGA+GGG + chr5_3:5328078-5328097 Msa0793330:intron 30.0%
TAAAAACATGCAAATCCATG+CGG - chr5_3:5328135-5328154 None:intergenic 30.0%
AACTTGAAACCAAATTGCAA+GGG - chr5_3:5328193-5328212 None:intergenic 30.0%
AAACTTGAAACCAAATTGCA+AGG - chr5_3:5328194-5328213 None:intergenic 30.0%
!! AATATGTAGCCCTTAGTTTT+TGG + chr5_3:5328313-5328332 Msa0793330:intron 30.0%
TATAGTGCACCAAAAACTAA+GGG - chr5_3:5328325-5328344 None:intergenic 30.0%
ATATAGTGCACCAAAAACTA+AGG - chr5_3:5328326-5328345 None:intergenic 30.0%
!! TTTTGGTTAAGGAATTGGAA+TGG + chr5_3:5328639-5328658 Msa0793330:intron 30.0%
ATAGGAAATTTCAAGAGACA+GGG - chr5_3:5328716-5328735 None:intergenic 30.0%
ATTACTGTTGACAAATGACA+GGG - chr5_3:5328902-5328921 None:intergenic 30.0%
AATTACTGTTGACAAATGAC+AGG - chr5_3:5328903-5328922 None:intergenic 30.0%
AAATGGCAAAAGTAGCATTT+GGG - chr5_3:5328996-5329015 None:intergenic 30.0%
! CAATTTTATCAATACCACGA+TGG + chr5_3:5329108-5329127 Msa0793330:CDS 30.0%
AATAATGAGTTAAACCATCG+TGG - chr5_3:5329125-5329144 None:intergenic 30.0%
ATGGTTTAACTCATTATTCC+AGG + chr5_3:5329127-5329146 Msa0793330:CDS 30.0%
TGGTTTAACTCATTATTCCA+GGG + chr5_3:5329128-5329147 Msa0793330:CDS 30.0%
TTGTTCTTACCACTAGTTAT+AGG - chr5_3:5329162-5329181 None:intergenic 30.0%
GCAAAATAGGTTATTATGTG+CGG + chr5_3:5329207-5329226 Msa0793330:intron 30.0%
CAGGTAAACAGATTTGTAAT+TGG - chr5_3:5329331-5329350 None:intergenic 30.0%
! TTGGAGTATCAAAATGTTTC+TGG + chr5_3:5329438-5329457 Msa0793330:CDS 30.0%
ATAAGTGTTTCAGAGATCTT+TGG + chr5_3:5329567-5329586 Msa0793330:intron 30.0%
TAAGTGTTTCAGAGATCTTT+GGG + chr5_3:5329568-5329587 Msa0793330:intron 30.0%
AATTAGCCAAAATCTCATGA+GGG - chr5_3:5329968-5329987 None:intergenic 30.0%
AAAAAGTAACCAAAACCTCA+AGG - chr5_3:5330371-5330390 None:intergenic 30.0%
!!! TTGGTTACTTTTTTAACTCG+GGG + chr5_3:5330378-5330397 Msa0793330:three_prime_UTR 30.0%
!!! CTTGCTTACCTTTTTCAAAA+GGG + chr5_3:5330564-5330583 Msa0793330:three_prime_UTR 30.0%
AATCAGAGAATTGGGGAATT+GGG - chr5_3:5324365-5324384 None:intergenic 35.0%
AATCGGAGAATCAGAGAATT+GGG - chr5_3:5324373-5324392 None:intergenic 35.0%
GAAATCAATGAACGGAATCT+CGG - chr5_3:5324409-5324428 None:intergenic 35.0%
GTGAAGAGGAAATCAATGAA+CGG - chr5_3:5324417-5324436 None:intergenic 35.0%
!! ATGATTTCGGATTTTGAGTG+GGG - chr5_3:5324507-5324526 None:intergenic 35.0%
! GAATGATTTCGGATTTTGAG+TGG - chr5_3:5324509-5324528 None:intergenic 35.0%
TCAAAATCCGAAATCATTCG+TGG + chr5_3:5324510-5324529 Msa0793330:five_prime_UTR 35.0%
CAAAATCCGAAATCATTCGT+GGG + chr5_3:5324511-5324530 Msa0793330:five_prime_UTR 35.0%
TTGATTTCAAGCGATGAGAA+GGG - chr5_3:5324540-5324559 None:intergenic 35.0%
! TTTGATTTCAAGCGATGAGA+AGG - chr5_3:5324541-5324560 None:intergenic 35.0%
GAAATCAAATGTAGCTTCTG+GGG + chr5_3:5324552-5324571 Msa0793330:five_prime_UTR 35.0%
! TTTGATTGTTGTTACAGTGG+TGG + chr5_3:5324699-5324718 Msa0793330:five_prime_UTR 35.0%
! TTGATTGTTGTTACAGTGGT+GGG + chr5_3:5324700-5324719 Msa0793330:five_prime_UTR 35.0%
! TCTCTGCAGTTGATTCAAAA+CGG + chr5_3:5324803-5324822 Msa0793330:CDS 35.0%
!! CTTTCTCTTTGGGGTTATAA+AGG - chr5_3:5324877-5324896 None:intergenic 35.0%
! TATCGGTTGTTGTTAAGTAG+TGG + chr5_3:5325116-5325135 Msa0793330:intron 35.0%
ACTCTCCTTACTACATATAG+TGG - chr5_3:5325286-5325305 None:intergenic 35.0%
! AAGTCTTATCCCACTAAATG+GGG - chr5_3:5325462-5325481 None:intergenic 35.0%
! CAAGTCTTATCCCACTAAAT+GGG - chr5_3:5325463-5325482 None:intergenic 35.0%
TTGCTACATAGATGTGGATT+TGG + chr5_3:5325580-5325599 Msa0793330:intron 35.0%
!! TCTACCATTGATTCAACATC+GGG - chr5_3:5325649-5325668 None:intergenic 35.0%
!! CTCTACCATTGATTCAACAT+CGG - chr5_3:5325650-5325669 None:intergenic 35.0%
GTTGAATCAATGGTAGAGAT+TGG + chr5_3:5325652-5325671 Msa0793330:intron 35.0%
!! CTCAGTCATTGATTTGAGAT+TGG - chr5_3:5325714-5325733 None:intergenic 35.0%
TCTAATACTACGTGTAACTG+CGG + chr5_3:5325735-5325754 Msa0793330:intron 35.0%
CGACGAACATAAAACATCTA+TGG - chr5_3:5325789-5325808 None:intergenic 35.0%
ACACCATGATGAGATATGAT+TGG + chr5_3:5326032-5326051 Msa0793330:intron 35.0%
! TATGTTTCATGGTGTGCTTT+TGG + chr5_3:5326181-5326200 Msa0793330:intron 35.0%
!! TTGGTGTTGTGTTGAACTAT+AGG + chr5_3:5326200-5326219 Msa0793330:intron 35.0%
CATCAAAATCAAATCCAGTC+TGG - chr5_3:5327298-5327317 None:intergenic 35.0%
!! GACTGGATTTGATTTTGATG+AGG + chr5_3:5327298-5327317 Msa0793330:CDS 35.0%
CAGATGCAACAATGATATCA+TGG - chr5_3:5327349-5327368 None:intergenic 35.0%
ATTGTTGCATCTGCCATATT+TGG + chr5_3:5327356-5327375 Msa0793330:CDS 35.0%
TATGGAGAATCATTGTTGTC+CGG + chr5_3:5327602-5327621 Msa0793330:CDS 35.0%
AATCAGCGTATGGAATATTC+CGG - chr5_3:5327624-5327643 None:intergenic 35.0%
!! ATATTCCATACGCTGATTCT+AGG + chr5_3:5327626-5327645 Msa0793330:CDS 35.0%
GGTGGCATGATATTAGAAAT+AGG - chr5_3:5327743-5327762 None:intergenic 35.0%
! GAGGCATCATAATTCATAAG+AGG - chr5_3:5327815-5327834 None:intergenic 35.0%
GGAATCTGCAATAAGTTTAG+AGG - chr5_3:5327834-5327853 None:intergenic 35.0%
CCAAATTGAATATCGGATGT+TGG - chr5_3:5327883-5327902 None:intergenic 35.0%
CCAACATCCGATATTCAATT+TGG + chr5_3:5327880-5327899 Msa0793330:CDS 35.0%
! TTGCTAAATGATTTTCCGCA+TGG + chr5_3:5328117-5328136 Msa0793330:intron 35.0%
ACTTAGCAAAGTTACCTAGA+AGG + chr5_3:5328359-5328378 Msa0793330:intron 35.0%
TTTCTTAGTTAGTGGTCGAA+CGG - chr5_3:5328467-5328486 None:intergenic 35.0%
TTACACTAAGAGACCTAAAC+AGG + chr5_3:5328489-5328508 Msa0793330:intron 35.0%
!!! GTTTAGTCAGGTTTTGGTTA+AGG + chr5_3:5328628-5328647 Msa0793330:intron 35.0%
!!! TCAGGTTTTGGTTAAGGAAT+TGG + chr5_3:5328634-5328653 Msa0793330:intron 35.0%
CATAGGAAATTTCAAGAGAC+AGG - chr5_3:5328717-5328736 None:intergenic 35.0%
TTGTAAACATAGACCTCATG+AGG + chr5_3:5328856-5328875 Msa0793330:intron 35.0%
CTGGATGATATAAAAGAGAG+TGG - chr5_3:5328961-5328980 None:intergenic 35.0%
! CACTCTCTTTTATATCATCC+AGG + chr5_3:5328959-5328978 Msa0793330:intron 35.0%
TTATATCATCCAGGTTCTTG+TGG + chr5_3:5328968-5328987 Msa0793330:intron 35.0%
GAAATGGCAAAAGTAGCATT+TGG - chr5_3:5328997-5329016 None:intergenic 35.0%
AAATTGAACTTGGCGATCAA+TGG - chr5_3:5329094-5329113 None:intergenic 35.0%
! ATAACCTATTTTGCACACAC+AGG - chr5_3:5329201-5329220 None:intergenic 35.0%
CTAATGATAACACAACCTTC+AGG - chr5_3:5329298-5329317 None:intergenic 35.0%
CAAATCTGTTTACCTGCTTA+TGG + chr5_3:5329335-5329354 Msa0793330:CDS 35.0%
AACTTCATTGAACCATAAGC+AGG - chr5_3:5329350-5329369 None:intergenic 35.0%
! ACTGATCTCTAGAAGTAAAG+CGG - chr5_3:5329375-5329394 None:intergenic 35.0%
! AGATCAGTTAAGCTTTTCCA+CGG + chr5_3:5329387-5329406 Msa0793330:CDS 35.0%
!! CATTATTTTGTCTCTTACCG+TGG - chr5_3:5329407-5329426 None:intergenic 35.0%
CACGGTAAGAGACAAAATAA+TGG + chr5_3:5329405-5329424 Msa0793330:CDS 35.0%
!! AAATGTTTCTGGATTGTGAG+AGG + chr5_3:5329449-5329468 Msa0793330:CDS 35.0%
CCAAACTGAACACAGAAAAA+TGG - chr5_3:5329511-5329530 None:intergenic 35.0%
!! CCATTTTTCTGTGTTCAGTT+TGG + chr5_3:5329508-5329527 Msa0793330:intron 35.0%
AAGTGTTTCAGAGATCTTTG+GGG + chr5_3:5329569-5329588 Msa0793330:intron 35.0%
CAGTGATTCAATAGAACTGA+GGG - chr5_3:5329644-5329663 None:intergenic 35.0%
TCAGTGATTCAATAGAACTG+AGG - chr5_3:5329645-5329664 None:intergenic 35.0%
TGAATCACTGAACATTGTGA+AGG + chr5_3:5329654-5329673 Msa0793330:intron 35.0%
AAACAATTTCTCAAATCGGG+TGG - chr5_3:5329699-5329718 None:intergenic 35.0%
TGAACATTTGTACGTGAAAC+AGG + chr5_3:5329776-5329795 Msa0793330:intron 35.0%
CAGAGTTGTACAGAAAATAG+TGG - chr5_3:5329812-5329831 None:intergenic 35.0%
! TCTGTACAACTCTGAAAACA+AGG + chr5_3:5329818-5329837 Msa0793330:intron 35.0%
! ATTTTCCCCTCATGAGATTT+TGG + chr5_3:5329959-5329978 Msa0793330:intron 35.0%
ATTAGCCAAAATCTCATGAG+GGG - chr5_3:5329967-5329986 None:intergenic 35.0%
GAATTAGCCAAAATCTCATG+AGG - chr5_3:5329969-5329988 None:intergenic 35.0%
GAGGAAAGAAAAAAGAAGGT+TGG - chr5_3:5330049-5330068 None:intergenic 35.0%
TTGTTAGTAGTATAGGGAAC+AGG - chr5_3:5330225-5330244 None:intergenic 35.0%
!! AGAGGCTTGTTAGTAGTATA+GGG - chr5_3:5330231-5330250 None:intergenic 35.0%
! ATCTTTTCTCCTTGAGGTTT+TGG + chr5_3:5330359-5330378 Msa0793330:three_prime_UTR 35.0%
!! CCTTTTGAAAAAGGTAAGCA+AGG - chr5_3:5330566-5330585 None:intergenic 35.0%
!!! CCTTGCTTACCTTTTTCAAA+AGG + chr5_3:5330563-5330582 Msa0793330:three_prime_UTR 35.0%
GAATCAGAGAATTGGGGAAT+TGG - chr5_3:5324366-5324385 None:intergenic 40.0%
ATCGGAGAATCAGAGAATTG+GGG - chr5_3:5324372-5324391 None:intergenic 40.0%
GAATCGGAGAATCAGAGAAT+TGG - chr5_3:5324374-5324393 None:intergenic 40.0%
TTGATCGGAAAAGAGGAAGT+GGG - chr5_3:5324463-5324482 None:intergenic 40.0%
TGGAAACTTGATCGGAAAAG+AGG - chr5_3:5324470-5324489 None:intergenic 40.0%
ATTGAAAGGAGAGAGATGAC+TGG + chr5_3:5324746-5324765 Msa0793330:exon 40.0%
ATAACCCCAAAGAGAAAGAG+AGG + chr5_3:5324879-5324898 Msa0793330:CDS 40.0%
AACTCCTCTCTTTCTCTTTG+GGG - chr5_3:5324886-5324905 None:intergenic 40.0%
CAACTCCTCTCTTTCTCTTT+GGG - chr5_3:5324887-5324906 None:intergenic 40.0%
ACAACTCCTCTCTTTCTCTT+TGG - chr5_3:5324888-5324907 None:intergenic 40.0%
ATGCTTCTCATGCTTCTTTG+TGG + chr5_3:5324947-5324966 Msa0793330:CDS 40.0%
! GGCTGCTTTACACTTTACAA+AGG + chr5_3:5324989-5325008 Msa0793330:CDS 40.0%
AGTAAGGAGAGTAGATCAGA+TGG + chr5_3:5325178-5325197 Msa0793330:intron 40.0%
AGTAAGGAGAGTAGATCAGA+TGG + chr5_3:5325178-5325197 Msa0793330:intron 40.0%
ATGGAGGATAGTTAGATCAC+TGG + chr5_3:5325313-5325332 Msa0793330:intron 40.0%
AGTTAGATCACTGGATGTAG+AGG + chr5_3:5325322-5325341 Msa0793330:intron 40.0%
! CCAAGTCTTATCCCACTAAA+TGG - chr5_3:5325464-5325483 None:intergenic 40.0%
CCATTTAGTGGGATAAGACT+TGG + chr5_3:5325461-5325480 Msa0793330:intron 40.0%
ACGATCAATGTTGTCAATCG+CGG - chr5_3:5325557-5325576 None:intergenic 40.0%
CGTATCTTGCTACATAGATG+TGG + chr5_3:5325574-5325593 Msa0793330:intron 40.0%
AATGTTATCTTGTGCCCTCA+AGG + chr5_3:5325828-5325847 Msa0793330:intron 40.0%
!! CTTCTTAACTTGTGCCTTGA+GGG - chr5_3:5325845-5325864 None:intergenic 40.0%
ATTCTTAACATGTGCCCTGA+GGG + chr5_3:5325967-5325986 Msa0793330:intron 40.0%
GTGTTGTGTTGAACTATAGG+TGG + chr5_3:5326203-5326222 Msa0793330:intron 40.0%
AAAAGGATCTTCCTCTACTG+TGG + chr5_3:5326418-5326437 Msa0793330:CDS 40.0%
AAAGGATCTTCCTCTACTGT+GGG + chr5_3:5326419-5326438 Msa0793330:CDS 40.0%
ACAAAACAAAACTTACGGCG+TGG - chr5_3:5326506-5326525 None:intergenic 40.0%
TATGTTTCCAAGTGAACCAG+AGG + chr5_3:5326791-5326810 Msa0793330:CDS 40.0%
ATGTTTCCAAGTGAACCAGA+GGG + chr5_3:5326792-5326811 Msa0793330:CDS 40.0%
! AGACCATGAAAGTGCATTGT+GGG + chr5_3:5326877-5326896 Msa0793330:CDS 40.0%
TAACCCACAATGCACTTTCA+TGG - chr5_3:5326883-5326902 None:intergenic 40.0%
TTCTTGCAGTGACTGTATCT+CGG + chr5_3:5327036-5327055 Msa0793330:intron 40.0%
CCGTTGAACGAAGATCAAAT+GGG - chr5_3:5327136-5327155 None:intergenic 40.0%
CCCATTTGATCTTCGTTCAA+CGG + chr5_3:5327133-5327152 Msa0793330:intron 40.0%
ACCGTTGAACGAAGATCAAA+TGG - chr5_3:5327137-5327156 None:intergenic 40.0%
TTCGTTCAACGGTTTAGATG+TGG + chr5_3:5327144-5327163 Msa0793330:intron 40.0%
TTTGTAAAAGGAAGCAGACC+TGG + chr5_3:5327269-5327288 Msa0793330:CDS 40.0%
TTGTAAAAGGAAGCAGACCT+GGG + chr5_3:5327270-5327289 Msa0793330:CDS 40.0%
GCTTGTTTACTGATGTTCCT+GGG - chr5_3:5327487-5327506 None:intergenic 40.0%
TGCTTGTTTACTGATGTTCC+TGG - chr5_3:5327488-5327507 None:intergenic 40.0%
GGAACATCAGTAAACAAGCA+AGG + chr5_3:5327488-5327507 Msa0793330:CDS 40.0%
!! ATGCCAGTATTTTGGATAGC+AGG + chr5_3:5327566-5327585 Msa0793330:CDS 40.0%
! TGATTCTAGGCGTAATGGAA+AGG + chr5_3:5327639-5327658 Msa0793330:CDS 40.0%
CGTACTCATTATATCGTAGG+TGG - chr5_3:5327761-5327780 None:intergenic 40.0%
TATTCCTGTTGTACGTAGAG+TGG + chr5_3:5327984-5328003 Msa0793330:intron 40.0%
ATTCCTGTTGTACGTAGAGT+GGG + chr5_3:5327985-5328004 Msa0793330:intron 40.0%
TCACTCAATGAAAGCCTTCT+AGG - chr5_3:5328376-5328395 None:intergenic 40.0%
GTGAAGAACTGCTTACTCTA+AGG + chr5_3:5328415-5328434 Msa0793330:intron 40.0%
TCGCACAATAACTATCCCAA+GGG - chr5_3:5328526-5328545 None:intergenic 40.0%
ATCGCACAATAACTATCCCA+AGG - chr5_3:5328527-5328546 None:intergenic 40.0%
GATTCCACGCTTTCAAAACT+TGG + chr5_3:5328665-5328684 Msa0793330:intron 40.0%
CACGCTTTCAAAACTTGGAA+GGG + chr5_3:5328670-5328689 Msa0793330:intron 40.0%
GACAGGGATGACATAATGTT+TGG - chr5_3:5328700-5328719 None:intergenic 40.0%
CACATGCAACAACACAACAT+AGG - chr5_3:5328734-5328753 None:intergenic 40.0%
TGTTGATACACTGTCTCAGA+GGG + chr5_3:5328778-5328797 Msa0793330:intron 40.0%
GCGTCTATAGTGTCTTGAAA+TGG - chr5_3:5329013-5329032 None:intergenic 40.0%
GCTAAGCTTCCTATAACTAG+TGG + chr5_3:5329150-5329169 Msa0793330:CDS 40.0%
! GGAGTATTATATGCAACCAC+AGG - chr5_3:5329242-5329261 None:intergenic 40.0%
GAGGCGTAACTTTGTAATAC+AGG + chr5_3:5329468-5329487 Msa0793330:CDS 40.0%
GGTTTGTGATAAACAATGCC+AGG + chr5_3:5330104-5330123 Msa0793330:intron 40.0%
TGTTCTCCAATACGTCTCTA+TGG - chr5_3:5330134-5330153 None:intergenic 40.0%
CTCGTCCAGTTGTTGTAATT+CGG + chr5_3:5330184-5330203 Msa0793330:CDS 40.0%
TTAGTAGTATAGGGAACAGG+TGG - chr5_3:5330222-5330241 None:intergenic 40.0%
!! CAGAGGCTTGTTAGTAGTAT+AGG - chr5_3:5330232-5330251 None:intergenic 40.0%
CTATACTACTAACAAGCCTC+TGG + chr5_3:5330230-5330249 Msa0793330:CDS 40.0%
! GTCTTGATCTTTTCTCCTTG+AGG + chr5_3:5330353-5330372 Msa0793330:exon 40.0%
!! AGGAGGCAGCATTTTTGAAA+TGG - chr5_3:5330467-5330486 None:intergenic 40.0%
TGAATGGAGGGAAGAGAGAA+TGG - chr5_3:5324303-5324322 None:intergenic 45.0%
!! ATGGAGATGGTGATGGATTG+AGG - chr5_3:5324333-5324352 None:intergenic 45.0%
ATGGAAGATGGAGATGGTGA+TGG - chr5_3:5324340-5324359 None:intergenic 45.0%
AGAATTGGGGAATTGGGAGA+TGG - chr5_3:5324359-5324378 None:intergenic 45.0%
ATCAATGAACGGAATCTCGG+CGG - chr5_3:5324406-5324425 None:intergenic 45.0%
CTTGATCGGAAAAGAGGAAG+TGG - chr5_3:5324464-5324483 None:intergenic 45.0%
!! ATTTCGGATTTTGAGTGGGG+TGG - chr5_3:5324504-5324523 None:intergenic 45.0%
GGGAAACCCACGAATGATTT+CGG - chr5_3:5324520-5324539 None:intergenic 45.0%
!! TGTTACAGTGGTGGGTTTGA+TGG + chr5_3:5324708-5324727 Msa0793330:five_prime_UTR 45.0%
!! TGGTGGGTTTGATGGTGAAA+AGG + chr5_3:5324716-5324735 Msa0793330:five_prime_UTR 45.0%
! AGAGATGACTGGAGTGTCAT+TGG + chr5_3:5324757-5324776 Msa0793330:exon 45.0%
! GAGATGACTGGAGTGTCATT+GGG + chr5_3:5324758-5324777 Msa0793330:exon 45.0%
TCAAAACGGTAACGTTTCGC+AGG + chr5_3:5324817-5324836 Msa0793330:CDS 45.0%
ATTTGTCGTCATCTTGGTCG+TGG + chr5_3:5324914-5324933 Msa0793330:CDS 45.0%
AAGGAGAGTAGATCAGATGG+AGG + chr5_3:5325181-5325200 Msa0793330:intron 45.0%
AAGGAGAGTAGATCAGATGG+AGG + chr5_3:5325181-5325200 Msa0793330:intron 45.0%
CTTATCCCACTAAATGGGGT+CGG - chr5_3:5325458-5325477 None:intergenic 45.0%
!! ACCATTGATTCAACATCGGG+CGG - chr5_3:5325646-5325665 None:intergenic 45.0%
TGATCCCCTGCAGTAGAAAA+AGG - chr5_3:5325761-5325780 None:intergenic 45.0%
! TTTTCTACTGCAGGGGATCA+TGG + chr5_3:5325761-5325780 Msa0793330:intron 45.0%
!! GCTTCTTAACTTGTGCCTTG+AGG - chr5_3:5325846-5325865 None:intergenic 45.0%
GATTCTTAACATGTGCCCTG+AGG + chr5_3:5325966-5325985 Msa0793330:intron 45.0%
AGTGTTATCTTGTGCCCTCA+GGG - chr5_3:5325984-5326003 None:intergenic 45.0%
TAGTGTTATCTTGTGCCCTC+AGG - chr5_3:5325985-5326004 None:intergenic 45.0%
CTTCTACGTCGTTGACAAGT+AGG + chr5_3:5326330-5326349 Msa0793330:CDS 45.0%
GAAGATCGTAAAGGGGAAAC+AGG - chr5_3:5326380-5326399 None:intergenic 45.0%
GAGGAGGAGGAAATGCAAAA+TGG - chr5_3:5326457-5326476 None:intergenic 45.0%
TCCTGTGTGCTATATTCCTG+TGG + chr5_3:5326689-5326708 Msa0793330:CDS 45.0%
TCCACAGGAATATAGCACAC+AGG - chr5_3:5326693-5326712 None:intergenic 45.0%
AAGTACAGGAGACTCTGATG+GGG - chr5_3:5326742-5326761 None:intergenic 45.0%
GAAGTACAGGAGACTCTGAT+GGG - chr5_3:5326743-5326762 None:intergenic 45.0%
! TATGTGAGAGTGCGAAGTAC+AGG - chr5_3:5326756-5326775 None:intergenic 45.0%
! ATACCCTCCTCTGGAAGAAA+GGG + chr5_3:5326833-5326852 Msa0793330:CDS 45.0%
! GAGACCATGAAAGTGCATTG+TGG + chr5_3:5326876-5326895 Msa0793330:CDS 45.0%
AGTGACTGTATCTCGGTTGT+TGG + chr5_3:5327043-5327062 Msa0793330:intron 45.0%
TGAGGAAGACCTCTTAGAGT+TGG + chr5_3:5327316-5327335 Msa0793330:CDS 45.0%
!! GGTACTGATCCAACTCTAAG+AGG - chr5_3:5327328-5327347 None:intergenic 45.0%
GTTTCCTGGCATAGATGTGA+TGG - chr5_3:5327446-5327465 None:intergenic 45.0%
ATGATGTAATACAGCAGCCC+AGG + chr5_3:5327467-5327486 Msa0793330:CDS 45.0%
CCTCCTGCTATCCAAAATAC+TGG - chr5_3:5327572-5327591 None:intergenic 45.0%
!! CCAGTATTTTGGATAGCAGG+AGG + chr5_3:5327569-5327588 Msa0793330:CDS 45.0%
TTACGCCTAGAATCAGCGTA+TGG - chr5_3:5327634-5327653 None:intergenic 45.0%
!! TACGCTGATTCTAGGCGTAA+TGG + chr5_3:5327634-5327653 Msa0793330:CDS 45.0%
TATCCCACTCTACGTACAAC+AGG - chr5_3:5327991-5328010 None:intergenic 45.0%
TGTGCACATCCCTTGCAATT+TGG + chr5_3:5328181-5328200 Msa0793330:intron 45.0%
! TTCAAGTTTGTCTCTGCCCT+TGG + chr5_3:5328205-5328224 Msa0793330:intron 45.0%
!! TTACTCTAAGGCAGACTGCA+AGG + chr5_3:5328427-5328446 Msa0793330:intron 45.0%
AGACCTAAACAGGTCTGAAC+CGG + chr5_3:5328499-5328518 Msa0793330:intron 45.0%
CAATAACTATCCCAAGGGAC+CGG - chr5_3:5328521-5328540 None:intergenic 45.0%
!!! CCTTCCAAGTTTTGAAAGCG+TGG - chr5_3:5328672-5328691 None:intergenic 45.0%
CCACGCTTTCAAAACTTGGA+AGG + chr5_3:5328669-5328688 Msa0793330:intron 45.0%
CTGTTGATACACTGTCTCAG+AGG + chr5_3:5328777-5328796 Msa0793330:intron 45.0%
TCATGAGGCCTCTCCTTATT+GGG + chr5_3:5328871-5328890 Msa0793330:intron 45.0%
ACGCTTTGATGTCTTTGTCG+AGG + chr5_3:5329029-5329048 Msa0793330:CDS 45.0%
GCAGAGGCTAATAAAGTTGC+TGG + chr5_3:5329051-5329070 Msa0793330:CDS 45.0%
AGTTATAGGAAGCTTAGCCC+TGG - chr5_3:5329148-5329167 None:intergenic 45.0%
CATGCCTGTGTGTGCAAAAT+AGG + chr5_3:5329194-5329213 Msa0793330:intron 45.0%
! GGCACAAGGCACATTTTAGA+TGG - chr5_3:5329263-5329282 None:intergenic 45.0%
TTCTCAAATCGGGTGGACAT+GGG - chr5_3:5329692-5329711 None:intergenic 45.0%
TTTCTCAAATCGGGTGGACA+TGG - chr5_3:5329693-5329712 None:intergenic 45.0%
CGAATTACAACAACTGGACG+AGG - chr5_3:5330186-5330205 None:intergenic 45.0%
CTAGGATTCTTCTTCACCAG+AGG - chr5_3:5330249-5330268 None:intergenic 45.0%
CTCTGGTGAAGAAGAATCCT+AGG + chr5_3:5330247-5330266 Msa0793330:CDS 45.0%
TGAGGTGTAGCGTGAATGGA+GGG - chr5_3:5324315-5324334 None:intergenic 50.0%
TTGAGGTGTAGCGTGAATGG+AGG - chr5_3:5324316-5324335 None:intergenic 50.0%
GGATTGAGGTGTAGCGTGAA+TGG - chr5_3:5324319-5324338 None:intergenic 50.0%
TGGGAGATGGAAGATGGAGA+TGG - chr5_3:5324346-5324365 None:intergenic 50.0%
GGGAATTGGGAGATGGAAGA+TGG - chr5_3:5324352-5324371 None:intergenic 50.0%
ATTTCCTCTTCACCCTTCCC+CGG + chr5_3:5324424-5324443 Msa0793330:five_prime_UTR 50.0%
! GTGTCATTGGGTCTACGAAC+AGG + chr5_3:5324770-5324789 Msa0793330:CDS 50.0%
GGTCTACGAACAGGTAGCTA+TGG + chr5_3:5324779-5324798 Msa0793330:CDS 50.0%
GAAGCTCTACGAACAAGCAC+CGG - chr5_3:5324845-5324864 None:intergenic 50.0%
ACTAAATGGGGTCGGCTACA+TGG - chr5_3:5325450-5325469 None:intergenic 50.0%
ATGTAGCCGACCCCATTTAG+TGG + chr5_3:5325449-5325468 Msa0793330:intron 50.0%
TGTAGCCGACCCCATTTAGT+GGG + chr5_3:5325450-5325469 Msa0793330:intron 50.0%
ATGTTGTCAATCGCGGATCG+TGG - chr5_3:5325550-5325569 None:intergenic 50.0%
TTGCACGCAGTTACTGTGTG+CGG + chr5_3:5325604-5325623 Msa0793330:intron 50.0%
TTACTGTGTGCGGTTGGAGT+GGG + chr5_3:5325614-5325633 Msa0793330:intron 50.0%
! TGCGGCCTTTTTCTACTGCA+GGG + chr5_3:5325753-5325772 Msa0793330:intron 50.0%
ACACTGATGTCCCACAGTAG+AGG - chr5_3:5326432-5326451 None:intergenic 50.0%
ACAAAACTTACGGCGTGGTC+CGG - chr5_3:5326501-5326520 None:intergenic 50.0%
GCACACAGGACATGCTGAAA+GGG - chr5_3:5326679-5326698 None:intergenic 50.0%
AGCACACAGGACATGCTGAA+AGG - chr5_3:5326680-5326699 None:intergenic 50.0%
!! CTAGCTATAGCTTGCTCCAC+AGG - chr5_3:5326708-5326727 None:intergenic 50.0%
CGAAGTACAGGAGACTCTGA+TGG - chr5_3:5326744-5326763 None:intergenic 50.0%
TTTCCAAGTGAACCAGAGGG+CGG + chr5_3:5326795-5326814 Msa0793330:CDS 50.0%
!! TTTTGGTGGATACCCTCCTC+TGG + chr5_3:5326824-5326843 Msa0793330:CDS 50.0%
! GATACCCTCCTCTGGAAGAA+AGG + chr5_3:5326832-5326851 Msa0793330:CDS 50.0%
TGCACTCAGTACGCACAAAC+TGG - chr5_3:5327206-5327225 None:intergenic 50.0%
TGCTCCATCACATCTATGCC+AGG + chr5_3:5327439-5327458 Msa0793330:intron 50.0%
TTGGATAGCAGGAGGAGAGT+TGG + chr5_3:5327577-5327596 Msa0793330:CDS 50.0%
GCAGGAGGAGAGTTGGATTA+TGG + chr5_3:5327584-5327603 Msa0793330:CDS 50.0%
CAATAAGGAGAGGCCTCATG+AGG - chr5_3:5328872-5328891 None:intergenic 50.0%
CTCATGAGGCCTCTCCTTAT+TGG + chr5_3:5328870-5328889 Msa0793330:intron 50.0%
TGACAGGGAACAGCCCAATA+AGG - chr5_3:5328887-5328906 None:intergenic 50.0%
TGATGTCTTTGTCGAGGCAG+AGG + chr5_3:5329035-5329054 Msa0793330:CDS 50.0%
ATACGTCTCTATGGTACGCC+TGG - chr5_3:5330125-5330144 None:intergenic 50.0%
GGCGTACCATAGAGACGTAT+TGG + chr5_3:5330125-5330144 Msa0793330:intron 50.0%
GGACGCCGAATTACAACAAC+TGG - chr5_3:5330192-5330211 None:intergenic 50.0%
GTGAAGAAGAATCCTAGGCG+CGG + chr5_3:5330252-5330271 Msa0793330:CDS 50.0%
TGAAGAAGAATCCTAGGCGC+GGG + chr5_3:5330253-5330272 Msa0793330:CDS 50.0%
TCGGCGGTTGGAGTTCGAAT+CGG - chr5_3:5324390-5324409 None:intergenic 55.0%
ATGAACGGAATCTCGGCGGT+TGG - chr5_3:5324402-5324421 None:intergenic 55.0%
GTGGGGTGGAGGGGTAAAAA+TGG - chr5_3:5324490-5324509 None:intergenic 55.0%
!! GGATTTTGAGTGGGGTGGAG+GGG - chr5_3:5324499-5324518 None:intergenic 55.0%
!! CGGATTTTGAGTGGGGTGGA+GGG - chr5_3:5324500-5324519 None:intergenic 55.0%
!! TCGGATTTTGAGTGGGGTGG+AGG - chr5_3:5324501-5324520 None:intergenic 55.0%
CGGTAACGTTTCGCAGGTTC+CGG + chr5_3:5324823-5324842 Msa0793330:CDS 55.0%
ACGCAGTTACTGTGTGCGGT+TGG + chr5_3:5325608-5325627 Msa0793330:intron 55.0%
GTTACTGTGTGCGGTTGGAG+TGG + chr5_3:5325613-5325632 Msa0793330:intron 55.0%
GCCGCCCGATGTTGAATCAA+TGG + chr5_3:5325642-5325661 Msa0793330:intron 55.0%
! CTGCGGCCTTTTTCTACTGC+AGG + chr5_3:5325752-5325771 Msa0793330:intron 55.0%
! GCGGCCTTTTTCTACTGCAG+GGG + chr5_3:5325754-5325773 Msa0793330:intron 55.0%
TGCATTTCCTCCTCCTCCAC+CGG + chr5_3:5326460-5326479 Msa0793330:CDS 55.0%
GTACGTCTTCTATCAGCCGG+TGG - chr5_3:5326479-5326498 None:intergenic 55.0%
CCGGTACGTCTTCTATCAGC+CGG - chr5_3:5326482-5326501 None:intergenic 55.0%
CCGGCTGATAGAAGACGTAC+CGG + chr5_3:5326479-5326498 Msa0793330:CDS 55.0%
GGAGACTCTGATGGGGAACT+TGG - chr5_3:5326735-5326754 None:intergenic 55.0%
CGTCCCTTTCTTCCAGAGGA+GGG - chr5_3:5326839-5326858 None:intergenic 55.0%
! GAAGCGTCCCTTTCTTCCAG+AGG - chr5_3:5326843-5326862 None:intergenic 55.0%
GGTTTAGATGTGGCGACTGC+AGG + chr5_3:5327154-5327173 Msa0793330:intron 55.0%
GTCGAACGGTCTACTCCTGA+AGG - chr5_3:5328453-5328472 None:intergenic 55.0%
! GGACCGGTTCAGACCTGTTT+AGG - chr5_3:5328505-5328524 None:intergenic 55.0%
GGGAACAGCCCAATAAGGAG+AGG - chr5_3:5328882-5328901 None:intergenic 55.0%
ATTTGGGCGCCACAAGAACC+TGG - chr5_3:5328980-5328999 None:intergenic 55.0%
ACCTTCAGGCACATCTGCAG+AGG - chr5_3:5329284-5329303 None:intergenic 55.0%
ACAACAACTGGACGAGGACG+AGG - chr5_3:5330180-5330199 None:intergenic 55.0%
TAGGGAACAGGTGGAAGACG+AGG - chr5_3:5330213-5330232 None:intergenic 55.0%
GGGAGAGGAGATAGGAGATC+AGG + chr5_3:5330273-5330292 Msa0793330:CDS 55.0%
AGTGGGTCCCACTGAGACTC+CGG - chr5_3:5324446-5324465 None:intergenic 60.0%
CTTCTATCAGCCGGTGGAGG+AGG - chr5_3:5326473-5326492 None:intergenic 60.0%
CGTCTTCTATCAGCCGGTGG+AGG - chr5_3:5326476-5326495 None:intergenic 60.0%
CCAAAATCAGAGCCGCCCTC+TGG - chr5_3:5326810-5326829 None:intergenic 60.0%
!! CCAGAGGGCGGCTCTGATTT+TGG + chr5_3:5326807-5326826 Msa0793330:CDS 60.0%
!! GAGGGCGGCTCTGATTTTGG+TGG + chr5_3:5326810-5326829 Msa0793330:CDS 60.0%
GCGTCCCTTTCTTCCAGAGG+AGG - chr5_3:5326840-5326859 None:intergenic 60.0%
TCAAATCCAGTCTGGCGCCC+AGG - chr5_3:5327290-5327309 None:intergenic 60.0%
AGGCAGACTGCAAGGCCTTC+AGG + chr5_3:5328435-5328454 Msa0793330:intron 60.0%
ACAGGTCTGAACCGGTCCCT+TGG + chr5_3:5328507-5328526 Msa0793330:intron 60.0%
CAGGTCTGAACCGGTCCCTT+GGG + chr5_3:5328508-5328527 Msa0793330:intron 60.0%
TGTGCGGAGAGATGTGCCTG+TGG + chr5_3:5329223-5329242 Msa0793330:intron 60.0%
! GGCACATCTGCAGAGGCACA+AGG - chr5_3:5329277-5329296 None:intergenic 60.0%
GCCTCTGCAGATGTGCCTGA+AGG + chr5_3:5329280-5329299 Msa0793330:intron 60.0%
AAGAATCCTAGGCGCGGGAG+AGG + chr5_3:5330258-5330277 Msa0793330:CDS 60.0%
GACTCCGGGGAAGGGTGAAG+AGG - chr5_3:5324431-5324450 None:intergenic 65.0%
ACCCTTCCCCGGAGTCTCAG+TGG + chr5_3:5324435-5324454 Msa0793330:five_prime_UTR 65.0%
CCCACTGAGACTCCGGGGAA+GGG - chr5_3:5324439-5324458 None:intergenic 65.0%
CCCTTCCCCGGAGTCTCAGT+GGG + chr5_3:5324436-5324455 Msa0793330:five_prime_UTR 65.0%
TCCCACTGAGACTCCGGGGA+AGG - chr5_3:5324440-5324459 None:intergenic 65.0%
TGGGTCCCACTGAGACTCCG+GGG - chr5_3:5324444-5324463 None:intergenic 65.0%
GTGGGTCCCACTGAGACTCC+GGG - chr5_3:5324445-5324464 None:intergenic 65.0%
CTATCAGCCGGTGGAGGAGG+AGG - chr5_3:5326470-5326489 None:intergenic 65.0%
! GAGCCGCCCTCTGGTTCACT+TGG - chr5_3:5326801-5326820 None:intergenic 65.0%
ACTGGACGAGGACGAGGACG+AGG - chr5_3:5330174-5330193 None:intergenic 65.0%
CTATCTCCTCTCCCGCGCCT+AGG - chr5_3:5330267-5330286 None:intergenic 65.0%
CTAGGCGCGGGAGAGGAGAT+AGG + chr5_3:5330265-5330284 Msa0793330:CDS 65.0%
AGCAGACCTGGGCGCCAGAC+TGG + chr5_3:5327281-5327300 Msa0793330:CDS 70.0%
GGACGAGGAGGAGGAGGAGG+AGG - chr5_3:5330159-5330178 None:intergenic 70.0%
CGAGGACGAGGAGGAGGAGG+AGG - chr5_3:5330162-5330181 None:intergenic 70.0%
GGACGAGGACGAGGAGGAGG+AGG - chr5_3:5330165-5330184 None:intergenic 70.0%
CGAGGACGAGGACGAGGAGG+AGG - chr5_3:5330168-5330187 None:intergenic 70.0%
GGACGAGGACGAGGACGAGG+AGG - chr5_3:5330171-5330190 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 5324276 5330603 5324276 ID=Msa0793330;Name=Msa0793330
chr5_3 mRNA 5324276 5330603 5324276 ID=Msa0793330-mRNA-1;Parent=Msa0793330;Name=Msa0793330-mRNA-1;_AED=0.08;_eAED=0.08;_QI=485|1|1|1|0.88|0.8|10|214|594
chr5_3 exon 5324276 5325010 5324276 ID=Msa0793330-mRNA-1:exon:2039;Parent=Msa0793330-mRNA-1
chr5_3 exon 5326222 5326509 5326222 ID=Msa0793330-mRNA-1:exon:2040;Parent=Msa0793330-mRNA-1
chr5_3 exon 5326685 5326898 5326685 ID=Msa0793330-mRNA-1:exon:2041;Parent=Msa0793330-mRNA-1
chr5_3 exon 5327268 5327377 5327268 ID=Msa0793330-mRNA-1:exon:2042;Parent=Msa0793330-mRNA-1
chr5_3 exon 5327461 5327660 5327461 ID=Msa0793330-mRNA-1:exon:2043;Parent=Msa0793330-mRNA-1
chr5_3 exon 5327849 5327952 5327849 ID=Msa0793330-mRNA-1:exon:2044;Parent=Msa0793330-mRNA-1
chr5_3 exon 5328981 5329171 5328981 ID=Msa0793330-mRNA-1:exon:2045;Parent=Msa0793330-mRNA-1
chr5_3 exon 5329290 5329489 5329290 ID=Msa0793330-mRNA-1:exon:2046;Parent=Msa0793330-mRNA-1
chr5_3 exon 5330126 5330491 5330126 ID=Msa0793330-mRNA-1:exon:2047;Parent=Msa0793330-mRNA-1
chr5_3 exon 5330528 5330603 5330528 ID=Msa0793330-mRNA-1:exon:2048;Parent=Msa0793330-mRNA-1
chr5_3 five_prime_UTR 5324276 5324760 5324276 ID=Msa0793330-mRNA-1:five_prime_utr;Parent=Msa0793330-mRNA-1
chr5_3 CDS 5324761 5325010 5324761 ID=Msa0793330-mRNA-1:cds;Parent=Msa0793330-mRNA-1
chr5_3 CDS 5326222 5326509 5326222 ID=Msa0793330-mRNA-1:cds;Parent=Msa0793330-mRNA-1
chr5_3 CDS 5326685 5326898 5326685 ID=Msa0793330-mRNA-1:cds;Parent=Msa0793330-mRNA-1
chr5_3 CDS 5327268 5327377 5327268 ID=Msa0793330-mRNA-1:cds;Parent=Msa0793330-mRNA-1
chr5_3 CDS 5327461 5327660 5327461 ID=Msa0793330-mRNA-1:cds;Parent=Msa0793330-mRNA-1
chr5_3 CDS 5327849 5327952 5327849 ID=Msa0793330-mRNA-1:cds;Parent=Msa0793330-mRNA-1
chr5_3 CDS 5328981 5329171 5328981 ID=Msa0793330-mRNA-1:cds;Parent=Msa0793330-mRNA-1
chr5_3 CDS 5329290 5329489 5329290 ID=Msa0793330-mRNA-1:cds;Parent=Msa0793330-mRNA-1
chr5_3 CDS 5330126 5330353 5330126 ID=Msa0793330-mRNA-1:cds;Parent=Msa0793330-mRNA-1
chr5_3 three_prime_UTR 5330354 5330491 5330354 ID=Msa0793330-mRNA-1:three_prime_utr;Parent=Msa0793330-mRNA-1
chr5_3 three_prime_UTR 5330528 5330603 5330528 ID=Msa0793330-mRNA-1:three_prime_utr;Parent=Msa0793330-mRNA-1
Gene Sequence

>Msa0793330

ATGACTGGAGTGTCATTGGGTCTACGAACAGGTAGCTATGGTTCTCTGCAGTTGATTCAAAACGGTAACGTTTCGCAGGTTCCGGTGCTTGTTCGTAGAGCTTCGAAGACGCTCCTTTATAACCCCAAAGAGAAAGAGAGGAGTTGTTTGTATATTTGTCGTCATCTTGGTCGTGGCAAAGTTGCTATGCTTCTCATGCTTCTTTGTGGCCTTTTCATTTTTGTATTTGGCTGCTTTACACTTTACAAAGGTGGAAACATCACCAATGAAATTGAAGATACACGATCTTATGCCCTTAGTACCTATAAAGTTATAGGCGTTGATGGAACAATAGAAACTAAGTTAAAGGATAGTAGTTCTTCTACGTCGTTGACAAGTAGGCATAAAAATTCATTCAGGGAACATCCTGTTTCCCCTTTACGATCTTCATATAATTTGAAAGGAAAAAAAGGATCTTCCTCTACTGTGGGACATCAGTGTGACCATTTTGCATTTCCTCCTCCTCCACCGGCTGATAGAAGACGTACCGGACCACGCCCATGTCCTGTGTGCTATATTCCTGTGGAGCAAGCTATAGCTAGTATGCCAAGTTCCCCATCAGAGTCTCCTGTACTTCGCACTCTCACATATGCGCATAATGAAAATATGTTTCCAAGTGAACCAGAGGGCGGCTCTGATTTTGGTGGATACCCTCCTCTGGAAGAAAGGGACGCTTCTTTTGATATAAAAGAGACCATGAAAGTGCATTGTGGATTTGTAAAAGGAAGCAGACCTGGGCGCCAGACTGGATTTGATTTTGATGAGGAAGACCTCTTAGAGTTGGATCAGTACCATGATATCATTGTTGCATCTGCCATATTTGGAAACTATGATGTAATACAGCAGCCCAGGAACATCAGTAAACAAGCAAGGAAGAACATTCCTTTCTATATGTTCATTGATGAAGAGACAGAAATGTATATGAGAAATGCCAGTATTTTGGATAGCAGGAGGAGAGTTGGATTATGGAGAATCATTGTTGTCCGGAATATTCCATACGCTGATTCTAGGCGTAATGGAAAGATTCCAAAACTTCTTTTGCACAGAATCTTCCCCAACATCCGATATTCAATTTGGATTGATGGGAAGCTTGAGCTCGTTAAAGACCCATATCAAATTCTTGAAAGGTTCTTGTGGCGCCCAAATGCTACTTTTGCCATTTCAAGACACTATAGACGCTTTGATGTCTTTGTCGAGGCAGAGGCTAATAAAGTTGCTGGAAAATATGAGAATGCTTCCATTGATCGCCAAGTTCAATTTTATCAATACCACGATGGTTTAACTCATTATTCCAGGGCTAAGCTTCCTATAACTAGTGATGTGCCTGAAGGTTGTGTTATCATTAGAGAACACATTCCAATTACAAATCTGTTTACCTGCTTATGGTTCAATGAAGTTGACCGCTTTACTTCTAGAGATCAGTTAAGCTTTTCCACGGTAAGAGACAAAATAATGGCAAAAGTTGATTGGAGTATCAAAATGTTTCTGGATTGTGAGAGGCGTAACTTTGTAATACAGGCGTACCATAGAGACGTATTGGAGAACATGCCTCCTCCTCCTCCTCCTCGTCCTCGTCCTCGTCCAGTTGTTGTAATTCGGCGTCCTCGTCTTCCACCTGTTCCCTATACTACTAACAAGCCTCTGGTGAAGAAGAATCCTAGGCGCGGGAGAGGAGATAGGAGATCAGGTTCTAAGCGTCATCGTAAAATAGTAGACAATGTTGTTATGAACCAAATTTTATTTTAG

Protein sequence

>Msa0793330

MTGVSLGLRTGSYGSLQLIQNGNVSQVPVLVRRASKTLLYNPKEKERSCLYICRHLGRGKVAMLLMLLCGLFIFVFGCFTLYKGGNITNEIEDTRSYALSTYKVIGVDGTIETKLKDSSSSTSLTSRHKNSFREHPVSPLRSSYNLKGKKGSSSTVGHQCDHFAFPPPPPADRRRTGPRPCPVCYIPVEQAIASMPSSPSESPVLRTLTYAHNENMFPSEPEGGSDFGGYPPLEERDASFDIKETMKVHCGFVKGSRPGRQTGFDFDEEDLLELDQYHDIIVASAIFGNYDVIQQPRNISKQARKNIPFYMFIDEETEMYMRNASILDSRRRVGLWRIIVVRNIPYADSRRNGKIPKLLLHRIFPNIRYSIWIDGKLELVKDPYQILERFLWRPNATFAISRHYRRFDVFVEAEANKVAGKYENASIDRQVQFYQYHDGLTHYSRAKLPITSDVPEGCVIIREHIPITNLFTCLWFNEVDRFTSRDQLSFSTVRDKIMAKVDWSIKMFLDCERRNFVIQAYHRDVLENMPPPPPPRPRPRPVVVIRRPRLPPVPYTTNKPLVKKNPRRGRGDRRSGSKRHRKIVDNVVMNQILF*