Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0793360 | XP_003596745.1 | 98.374 | 123 | 2 | 0 | 1 | 123 | 1 | 123 | 3.26e-83 | 249 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0793360 | sp|Q9STY6|RS202_ARATH | 86.667 | 120 | 16 | 0 | 4 | 123 | 3 | 122 | 2.76e-72 | 214 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0793360 | G7IRA1 | 98.374 | 123 | 2 | 0 | 1 | 123 | 1 | 123 | 1.56e-83 | 249 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0256350 | Msa0793360 | 0.824077 | 9.815220e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0793360 | MtrunA17_Chr2g0317541 | 98.374 | 123 | 2 | 0 | 1 | 123 | 1 | 123 | 2.99e-87 | 249 |
| Msa0793360 | MtrunA17_Chr1g0197931 | 98.374 | 123 | 2 | 0 | 1 | 123 | 1 | 123 | 2.99e-87 | 249 |
| Msa0793360 | MtrunA17_Chr4g0018141 | 95.833 | 120 | 5 | 0 | 4 | 123 | 3 | 122 | 5.53e-83 | 238 |
| Msa0793360 | MtrunA17_Chr7g0258291 | 95.833 | 120 | 5 | 0 | 4 | 123 | 3 | 122 | 8.49e-83 | 238 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0793360 | AT3G47370.3 | 86.667 | 120 | 16 | 0 | 4 | 123 | 3 | 122 | 2.81e-73 | 214 |
| Msa0793360 | AT3G47370.2 | 86.667 | 120 | 16 | 0 | 4 | 123 | 3 | 122 | 2.81e-73 | 214 |
| Msa0793360 | AT3G47370.1 | 86.667 | 120 | 16 | 0 | 4 | 123 | 3 | 122 | 2.81e-73 | 214 |
| Msa0793360 | AT5G62300.1 | 85.484 | 124 | 17 | 1 | 1 | 123 | 1 | 124 | 3.13e-73 | 214 |
| Msa0793360 | AT5G62300.2 | 85.484 | 124 | 17 | 1 | 1 | 123 | 1 | 124 | 3.13e-73 | 214 |
| Msa0793360 | AT3G45030.1 | 85.484 | 124 | 17 | 1 | 1 | 123 | 1 | 124 | 3.13e-73 | 214 |
Find 51 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCCACCCTTCTCAAGATTT+TGG | 0.155224 | 5_3:+5353163 | None:intergenic |
| GTGCTAAGGACAAGCATCTT+AGG | 0.246369 | 5_3:-5353021 | Msa0793360:CDS |
| TCCTCCAAACCTACCTTTGT+TGG | 0.379765 | 5_3:+5353237 | None:intergenic |
| AAAACCAACAAAGGTAGGTT+TGG | 0.397934 | 5_3:-5353241 | Msa0793360:CDS |
| CTGTTTCAGGTACCAACACT+TGG | 0.402075 | 5_3:-5351192 | Msa0793360:intron |
| GTAATCTGCTTAACAACGTC+TGG | 0.415218 | 5_3:+5351118 | None:intergenic |
| TTGAACTCCGTGTGCACAAG+AGG | 0.436894 | 5_3:-5351162 | Msa0793360:CDS |
| GGTAGGTTTGGAGGATTCTC+AGG | 0.443866 | 5_3:-5353229 | Msa0793360:CDS |
| AGGAGCAGATCCACAAGATT+AGG | 0.453895 | 5_3:-5353209 | Msa0793360:CDS |
| GTTGTTAGTTTGTGCTGACT+TGG | 0.466618 | 5_3:-5353050 | Msa0793360:intron |
| AGGTTCTTCACATTACTACT+AGG | 0.481361 | 5_3:-5352970 | Msa0793360:CDS |
| GTAATGTGAAGAACCTTAGT+AGG | 0.488319 | 5_3:+5352977 | None:intergenic |
| ACCAGGTTCGATGGTGATAG+AGG | 0.489959 | 5_3:+5351096 | None:intergenic |
| CGAACCTGGTGTCGAGGTTG+AGG | 0.496706 | 5_3:-5351083 | Msa0793360:CDS |
| GAAGAATCTGCAAGCTGCTA+GGG | 0.497571 | 5_3:+5354049 | None:intergenic |
| ACCAACAAAGGTAGGTTTGG+AGG | 0.499020 | 5_3:-5353238 | Msa0793360:CDS |
| CAACGTCTGGGGAACTGTAA+AGG | 0.512765 | 5_3:+5351131 | None:intergenic |
| ACCTGTCAGGATGCCTACTA+AGG | 0.514666 | 5_3:-5352990 | Msa0793360:CDS |
| AGAAGAATCTGCAAGCTGCT+AGG | 0.514710 | 5_3:+5354048 | None:intergenic |
| ACCTCTATCACCATCGAACC+TGG | 0.519945 | 5_3:-5351097 | Msa0793360:CDS |
| GTTTGTGCTGACTTGGTTCG+TGG | 0.525514 | 5_3:-5353043 | Msa0793360:CDS |
| GCTATAAAACCAACAAAGGT+AGG | 0.526218 | 5_3:-5353246 | Msa0793360:CDS |
| TGCTAAGGACAAGCATCTTA+GGG | 0.529942 | 5_3:-5353020 | Msa0793360:CDS |
| TTAGGGTCAAGGGACCTGTC+AGG | 0.530594 | 5_3:-5353003 | Msa0793360:CDS |
| AGGAAGACCCCTTGTGGTGA+AGG | 0.532764 | 5_3:-5352950 | Msa0793360:intron |
| TCTTCCGTGATGGAAATTGA+CGG | 0.538720 | 5_3:+5354019 | None:intergenic |
| TAATCTGCTTAACAACGTCT+GGG | 0.545211 | 5_3:+5351119 | None:intergenic |
| TGACTTGGTTCGTGGTGCTA+AGG | 0.550440 | 5_3:-5353035 | Msa0793360:CDS |
| AACCTCGACACCAGGTTCGA+TGG | 0.552766 | 5_3:+5351087 | None:intergenic |
| ACCTTAGTAGGCATCCTGAC+AGG | 0.553261 | 5_3:+5352989 | None:intergenic |
| GTCACCTCAACCTCGACACC+AGG | 0.559183 | 5_3:+5351079 | None:intergenic |
| CACCATCGAACCTGGTGTCG+AGG | 0.559437 | 5_3:-5351089 | Msa0793360:CDS |
| GGACAAGCATCTTAGGGTCA+AGG | 0.562678 | 5_3:-5353014 | Msa0793360:CDS |
| CAATGACCCTCTTGTGCACA+CGG | 0.568374 | 5_3:+5351155 | None:intergenic |
| AGAGAGTGATCCTAATCTTG+TGG | 0.570336 | 5_3:+5353199 | None:intergenic |
| GACAAGCATCTTAGGGTCAA+GGG | 0.571703 | 5_3:-5353013 | Msa0793360:CDS |
| GCACGTCCAAAATCTTGAGA+AGG | 0.572845 | 5_3:-5353169 | Msa0793360:CDS |
| TTCAAATCTATCCCAAGTGT+TGG | 0.578144 | 5_3:+5351180 | None:intergenic |
| CACGTCCAAAATCTTGAGAA+GGG | 0.584353 | 5_3:-5353168 | Msa0793360:intron |
| TGCTGCTATAAAACCAACAA+AGG | 0.587951 | 5_3:-5353250 | Msa0793360:CDS |
| TGTTTCAGGTACCAACACTT+GGG | 0.590556 | 5_3:-5351191 | Msa0793360:intron |
| TGTAATACCTTCACCACAAG+GGG | 0.605448 | 5_3:+5352943 | None:intergenic |
| TCAAGATCAAGCGTCAGCAA+TGG | 0.636081 | 5_3:+5351057 | None:intergenic |
| AATCATAACAAGTTAAAACT+CGG | 0.638243 | 5_3:+5351033 | None:intergenic |
| ACCGCCGTCAATTTCCATCA+CGG | 0.646226 | 5_3:-5354023 | Msa0793360:five_prime_UTR |
| AATGTAATACCTTCACCACA+AGG | 0.648603 | 5_3:+5352941 | None:intergenic |
| ATGTAATACCTTCACCACAA+GGG | 0.650245 | 5_3:+5352942 | None:intergenic |
| TGAACTCCGTGTGCACAAGA+GGG | 0.668892 | 5_3:-5351161 | Msa0793360:CDS |
| ACTACTAGGAAGACCCCTTG+TGG | 0.691181 | 5_3:-5352956 | Msa0793360:CDS |
| AATCTGCTTAACAACGTCTG+GGG | 0.738536 | 5_3:+5351120 | None:intergenic |
| TCCGTGATGGAAATTGACGG+CGG | 0.742173 | 5_3:+5354022 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTACTATAAAAATAGTTTA+TGG | + | chr5_3:5352832-5352851 | None:intergenic | 10.0% |
| !!! | AAGATTATGAATTATATTTT+GGG | + | chr5_3:5353511-5353530 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTATTGTTTGCAT+TGG | - | chr5_3:5351151-5351170 | Msa0793360:CDS | 15.0% |
| !!! | TAAAATTTGTTTTTATTGTG+TGG | - | chr5_3:5352035-5352054 | Msa0793360:intron | 15.0% |
| !! | TTATGGATTTAATGATTTAT+AGG | - | chr5_3:5352323-5352342 | Msa0793360:intron | 15.0% |
| !! | TATGGATTTAATGATTTATA+GGG | - | chr5_3:5352324-5352343 | Msa0793360:intron | 15.0% |
| !! | ATAATTTATGATATATTCAC+AGG | - | chr5_3:5352365-5352384 | Msa0793360:intron | 15.0% |
| !!! | AAGTTAAACTGTTTTTTTTT+TGG | - | chr5_3:5352863-5352882 | Msa0793360:intron | 15.0% |
| !!! | TTTTATCTCATTTTTTTGAA+TGG | - | chr5_3:5353238-5353257 | Msa0793360:CDS | 15.0% |
| !!! | AGATTATGAATTATATTTTG+GGG | + | chr5_3:5353510-5353529 | None:intergenic | 15.0% |
| !!! | CAAGATTATGAATTATATTT+TGG | + | chr5_3:5353512-5353531 | None:intergenic | 15.0% |
| !!! | GGATTAATAATTTGAGTTAT+AGG | - | chr5_3:5351006-5351025 | Msa0793360:three_prime_UTR | 20.0% |
| !! | TAACACAATTGAAAACAAAA+GGG | + | chr5_3:5351052-5351071 | None:intergenic | 20.0% |
| !!! | AATACTCAGTTATAGTTTTA+GGG | - | chr5_3:5351227-5351246 | Msa0793360:intron | 20.0% |
| !!! | CATAACATTTATCTTTTGAA+CGG | + | chr5_3:5351567-5351586 | None:intergenic | 20.0% |
| !! | AAAGATAAATGTTATGTTAC+TGG | - | chr5_3:5351571-5351590 | Msa0793360:intron | 20.0% |
| !!! | TCACTAAATATGCTTATTTT+TGG | - | chr5_3:5351842-5351861 | Msa0793360:intron | 20.0% |
| !! | AATGTAATGAAAGTAGTAAT+AGG | - | chr5_3:5352258-5352277 | Msa0793360:intron | 20.0% |
| !!! | TTTTCTCAAAAATAGCAAAA+AGG | - | chr5_3:5352506-5352525 | Msa0793360:intron | 20.0% |
| !! | ATGATAAGTTTCATGATAAT+TGG | + | chr5_3:5352678-5352697 | None:intergenic | 20.0% |
| !! | GAGATAAAAATTTAGACTAT+GGG | + | chr5_3:5353227-5353246 | None:intergenic | 20.0% |
| !! | TGAGATAAAAATTTAGACTA+TGG | + | chr5_3:5353228-5353247 | None:intergenic | 20.0% |
| !! | TTTGTGTAGTTATTTATACA+TGG | - | chr5_3:5353379-5353398 | Msa0793360:intron | 20.0% |
| !! | AATCATAACAAGTTAAAACT+CGG | + | chr5_3:5353902-5353921 | None:intergenic | 20.0% |
| !! | ACTACAAAAATATAGGAAAT+AGG | + | chr5_3:5353932-5353951 | None:intergenic | 20.0% |
| !!! | TTCCTATATTTTTGTAGTTT+CGG | - | chr5_3:5353934-5353953 | Msa0793360:intron | 20.0% |
| ! | GTAACACAATTGAAAACAAA+AGG | + | chr5_3:5351053-5351072 | None:intergenic | 25.0% |
| ! | TCAAAAAACATCGAACAAAA+CGG | + | chr5_3:5351077-5351096 | None:intergenic | 25.0% |
| !!! | TTTTGTTCGATGTTTTTTGA+TGG | - | chr5_3:5351077-5351096 | Msa0793360:CDS | 25.0% |
| !! | CAATACTCAGTTATAGTTTT+AGG | - | chr5_3:5351226-5351245 | Msa0793360:intron | 25.0% |
| !!! | ATACTCAGTTATAGTTTTAG+GGG | - | chr5_3:5351228-5351247 | Msa0793360:intron | 25.0% |
| ! | AAAAAATAAGCCAATCCAAA+CGG | + | chr5_3:5351254-5351273 | None:intergenic | 25.0% |
| !! | AGCTTTTATATAGCTTTTCA+AGG | - | chr5_3:5351306-5351325 | Msa0793360:intron | 25.0% |
| ! | AAAAATAAGCCAATCCAAAT+GGG | - | chr5_3:5351525-5351544 | Msa0793360:intron | 25.0% |
| !! | ATAATTTTCTCAGTTGTACT+CGG | - | chr5_3:5351644-5351663 | Msa0793360:intron | 25.0% |
| ! | GGAAAAACACAATTAAAATC+AGG | + | chr5_3:5352134-5352153 | None:intergenic | 25.0% |
| ! | AAATGGTTTCACAAAATTCA+TGG | - | chr5_3:5352197-5352216 | Msa0793360:intron | 25.0% |
| !! | AGCTATTGAAAGAGTTTTTA+TGG | - | chr5_3:5352306-5352325 | Msa0793360:intron | 25.0% |
| ! | TGTTTGTAGATAGAACAAAT+AGG | - | chr5_3:5352731-5352750 | Msa0793360:intron | 25.0% |
| ! | GTTTGTAGATAGAACAAATA+GGG | - | chr5_3:5352732-5352751 | Msa0793360:intron | 25.0% |
| !! | AAAACAGTTTAACTTTAACC+AGG | + | chr5_3:5353046-5353065 | None:intergenic | 25.0% |
| !!! | TTTGAATGGTATTTGCTATT+TGG | - | chr5_3:5353252-5353271 | Msa0793360:CDS | 25.0% |
| ! | AACCGAAACTACAAAAATAT+AGG | + | chr5_3:5353939-5353958 | None:intergenic | 25.0% |
| !!! | TATTTTTGTAGTTTCGGTTT+TGG | - | chr5_3:5353940-5353959 | Msa0793360:intron | 25.0% |
| !! | ATTTTTGTAGTTTCGGTTTT+GGG | - | chr5_3:5353941-5353960 | Msa0793360:intron | 25.0% |
| CATTTCTATACTCATAGCAT+TGG | - | chr5_3:5350985-5351004 | Msa0793360:three_prime_UTR | 30.0% | |
| AAAAAACATCGAACAAAACG+GGG | + | chr5_3:5351075-5351094 | None:intergenic | 30.0% | |
| CAAAAAACATCGAACAAAAC+GGG | + | chr5_3:5351076-5351095 | None:intergenic | 30.0% | |
| !! | GTTTTAACGCTACTTCAATT+TGG | - | chr5_3:5351108-5351127 | Msa0793360:CDS | 30.0% |
| AAAATTCATGTGCAACTACA+TGG | + | chr5_3:5351206-5351225 | None:intergenic | 30.0% | |
| TAGTATTCATAAGCTTGTCA+AGG | - | chr5_3:5351397-5351416 | Msa0793360:intron | 30.0% | |
| CAAAAATAAGCCAATCCAAA+TGG | - | chr5_3:5351524-5351543 | Msa0793360:intron | 30.0% | |
| AAAAAGAAGCAGAACACAAA+AGG | + | chr5_3:5352071-5352090 | None:intergenic | 30.0% | |
| GATTTAATGACAGTAGTGAT+AGG | - | chr5_3:5352221-5352240 | Msa0793360:intron | 30.0% | |
| !! | AAATCATCTCTAGAAGCATT+TGG | + | chr5_3:5352446-5352465 | None:intergenic | 30.0% |
| ACTGAAAAATACAACTAGAC+AGG | + | chr5_3:5352537-5352556 | None:intergenic | 30.0% | |
| TAGACTTGCAAAACACAAAA+AGG | + | chr5_3:5352578-5352597 | None:intergenic | 30.0% | |
| !! | TTCTATCTCTTCAGTTTTAG+TGG | - | chr5_3:5352612-5352631 | Msa0793360:intron | 30.0% |
| TGAAACTTATCATTAGTGTG+AGG | - | chr5_3:5352685-5352704 | Msa0793360:intron | 30.0% | |
| AATAAGATCCTTATCCAAAC+AGG | + | chr5_3:5352758-5352777 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTTGGCTTTCACAC+TGG | - | chr5_3:5352875-5352894 | Msa0793360:intron | 30.0% |
| !! | GTTGTTTTCATGAACTATCT+TGG | - | chr5_3:5353080-5353099 | Msa0793360:intron | 30.0% |
| !!! | TGAATTATATTTTGGGGCTT+GGG | + | chr5_3:5353504-5353523 | None:intergenic | 30.0% |
| !!! | ATGAATTATATTTTGGGGCT+TGG | + | chr5_3:5353505-5353524 | None:intergenic | 30.0% |
| GGAAATTATATTCCTTGACT+TGG | + | chr5_3:5353560-5353579 | None:intergenic | 30.0% | |
| ACTTCAAAAATCAAGTCAGA+AGG | + | chr5_3:5353655-5353674 | None:intergenic | 30.0% | |
| ! | AAGTATTGTGTTCAATGTGT+AGG | - | chr5_3:5353671-5353690 | Msa0793360:intron | 30.0% |
| GAGCTTATGAACTAACATGA+AGG | - | chr5_3:5351467-5351486 | Msa0793360:intron | 35.0% | |
| TGAACGGAATCCCAAAATAA+GGG | + | chr5_3:5351551-5351570 | None:intergenic | 35.0% | |
| TTGAACGGAATCCCAAAATA+AGG | + | chr5_3:5351552-5351571 | None:intergenic | 35.0% | |
| GTTACTGGCATGTTACATTA+TGG | - | chr5_3:5351586-5351605 | Msa0793360:intron | 35.0% | |
| TGCTGCTATAAAACCAACAA+AGG | - | chr5_3:5351682-5351701 | Msa0793360:intron | 35.0% | |
| GCTATAAAACCAACAAAGGT+AGG | - | chr5_3:5351686-5351705 | Msa0793360:intron | 35.0% | |
| AAAACCAACAAAGGTAGGTT+TGG | - | chr5_3:5351691-5351710 | Msa0793360:intron | 35.0% | |
| GTAATGTGAAGAACCTTAGT+AGG | + | chr5_3:5351958-5351977 | None:intergenic | 35.0% | |
| AGGTTCTTCACATTACTACT+AGG | - | chr5_3:5351962-5351981 | Msa0793360:intron | 35.0% | |
| ATGTAATACCTTCACCACAA+GGG | + | chr5_3:5351993-5352012 | None:intergenic | 35.0% | |
| AATGTAATACCTTCACCACA+AGG | + | chr5_3:5351994-5352013 | None:intergenic | 35.0% | |
| CATGTTATGTGGAGGTTAAA+TGG | - | chr5_3:5352180-5352199 | Msa0793360:intron | 35.0% | |
| AACTCTTTCAATAGCTCACT+AGG | + | chr5_3:5352302-5352321 | None:intergenic | 35.0% | |
| ATGATATATTCACAGGCTGT+TGG | - | chr5_3:5352372-5352391 | Msa0793360:intron | 35.0% | |
| TATAAAGTTAGCTGCAACAG+TGG | - | chr5_3:5352473-5352492 | Msa0793360:intron | 35.0% | |
| CTCAAAAATAGCAAAAAGGC+TGG | - | chr5_3:5352510-5352529 | Msa0793360:intron | 35.0% | |
| CAAAAAGGAAAGAGAAGTCT+AGG | + | chr5_3:5352563-5352582 | None:intergenic | 35.0% | |
| TAGTGGAAAGATGTTCCATA+TGG | - | chr5_3:5352629-5352648 | Msa0793360:intron | 35.0% | |
| GGTATCCATAATATAGAGCA+CGG | + | chr5_3:5352657-5352676 | None:intergenic | 35.0% | |
| ACTTATCATTAGTGTGAGGA+TGG | - | chr5_3:5352689-5352708 | Msa0793360:intron | 35.0% | |
| CTTATCATTAGTGTGAGGAT+GGG | - | chr5_3:5352690-5352709 | Msa0793360:intron | 35.0% | |
| TAACTTTAACCAGGTTGCTT+GGG | + | chr5_3:5353037-5353056 | None:intergenic | 35.0% | |
| TTAACTTTAACCAGGTTGCT+TGG | + | chr5_3:5353038-5353057 | None:intergenic | 35.0% | |
| CATAAGTTGTGAGACTGTTT+GGG | + | chr5_3:5353168-5353187 | None:intergenic | 35.0% | |
| TCAAATAAGCCAATCCAAAC+AGG | - | chr5_3:5353201-5353220 | Msa0793360:CDS | 35.0% | |
| ACTTGAATCTGAATCTTCCT+CGG | - | chr5_3:5353276-5353295 | Msa0793360:exon | 35.0% | |
| TGAATGCTTCTTGTCTAGTA+TGG | - | chr5_3:5353331-5353350 | Msa0793360:intron | 35.0% | |
| GAATGCTTCTTGTCTAGTAT+GGG | - | chr5_3:5353332-5353351 | Msa0793360:intron | 35.0% | |
| ATCACTTGCACGATAAGAAA+AGG | + | chr5_3:5353447-5353466 | None:intergenic | 35.0% | |
| ! | ATGGTTTGTGAGAATTCACA+TGG | - | chr5_3:5353478-5353497 | Msa0793360:intron | 35.0% |
| !! | TATATTCCTTGACTTGGAAC+AGG | + | chr5_3:5353554-5353573 | None:intergenic | 35.0% |
| ATACAATTCACACCCAATTC+AGG | + | chr5_3:5353590-5353609 | None:intergenic | 35.0% | |
| GGCTAACTAACACATATTGT+TGG | + | chr5_3:5353634-5353653 | None:intergenic | 35.0% | |
| TTCAAATCTATCCCAAGTGT+TGG | + | chr5_3:5353755-5353774 | None:intergenic | 35.0% | |
| TAATCTGCTTAACAACGTCT+GGG | + | chr5_3:5353816-5353835 | None:intergenic | 35.0% | |
| !!! | GTTCGTTAGTTTTACAGTGT+TGG | - | chr5_3:5353979-5353998 | Msa0793360:intron | 35.0% |
| ! | TCTTCCGTGATGGAAATTGA+CGG | + | chr5_3:5350916-5350935 | None:intergenic | 40.0% |
| !!! | TTATAGTTTTAGGGGCCGTT+TGG | - | chr5_3:5351236-5351255 | Msa0793360:intron | 40.0% |
| TTGCATAAGCTCAAAACTGC+TGG | + | chr5_3:5351346-5351365 | None:intergenic | 40.0% | |
| AAATAAGGGCCCATTTGGAT+TGG | + | chr5_3:5351537-5351556 | None:intergenic | 40.0% | |
| !! | ATCCAAATGGGCCCTTATTT+TGG | - | chr5_3:5351537-5351556 | Msa0793360:intron | 40.0% |
| !!! | TCCAAATGGGCCCTTATTTT+GGG | - | chr5_3:5351538-5351557 | Msa0793360:intron | 40.0% |
| CTCAGTTGTACTCGGAAAAA+TGG | - | chr5_3:5351652-5351671 | Msa0793360:intron | 40.0% | |
| AGAGAGTGATCCTAATCTTG+TGG | + | chr5_3:5351736-5351755 | None:intergenic | 40.0% | |
| ! | AAGATTTTGGACGTGCTTAG+AGG | + | chr5_3:5351759-5351778 | None:intergenic | 40.0% |
| CACGTCCAAAATCTTGAGAA+GGG | - | chr5_3:5351764-5351783 | Msa0793360:intron | 40.0% | |
| TCCAAAATCTTGAGAAGGGT+GGG | - | chr5_3:5351768-5351787 | Msa0793360:intron | 40.0% | |
| !! | GTTGTTAGTTTGTGCTGACT+TGG | - | chr5_3:5351882-5351901 | Msa0793360:intron | 40.0% |
| TGCTAAGGACAAGCATCTTA+GGG | - | chr5_3:5351912-5351931 | Msa0793360:intron | 40.0% | |
| TGTAATACCTTCACCACAAG+GGG | + | chr5_3:5351992-5352011 | None:intergenic | 40.0% | |
| ATGCAATGGAGTAGGATTGA+AGG | + | chr5_3:5352163-5352182 | None:intergenic | 40.0% | |
| CACATAACATGCAATGGAGT+AGG | + | chr5_3:5352171-5352190 | None:intergenic | 40.0% | |
| CTACTCCATTGCATGTTATG+TGG | - | chr5_3:5352169-5352188 | Msa0793360:intron | 40.0% | |
| AACCTCCACATAACATGCAA+TGG | + | chr5_3:5352177-5352196 | None:intergenic | 40.0% | |
| TAGAACAAATAGGGCCTGTT+TGG | - | chr5_3:5352741-5352760 | Msa0793360:intron | 40.0% | |
| AAATAGGGCCTGTTTGGATA+AGG | - | chr5_3:5352747-5352766 | Msa0793360:intron | 40.0% | |
| GCATAAGTTGTGAGACTGTT+TGG | + | chr5_3:5353169-5353188 | None:intergenic | 40.0% | |
| GCTTATTTGAGCTTGTCTAC+TGG | + | chr5_3:5353191-5353210 | None:intergenic | 40.0% | |
| ATTTAGACTATGGGCCTGTT+TGG | + | chr5_3:5353218-5353237 | None:intergenic | 40.0% | |
| ATAGCACAAACAATTAGCCG+AGG | + | chr5_3:5353296-5353315 | None:intergenic | 40.0% | |
| !! | GTCTAGTATGGGTTGGAAAT+TGG | - | chr5_3:5353343-5353362 | Msa0793360:intron | 40.0% |
| GCTATTCTCTTCTTTGTGTG+TGG | - | chr5_3:5353401-5353420 | Msa0793360:intron | 40.0% | |
| CAAGTGATTCTATGTGTGGA+TGG | - | chr5_3:5353459-5353478 | Msa0793360:intron | 40.0% | |
| TATGAGCTTCCTTCTGTTTC+AGG | - | chr5_3:5353727-5353746 | Msa0793360:intron | 40.0% | |
| ! | TGTTTCAGGTACCAACACTT+GGG | - | chr5_3:5353741-5353760 | Msa0793360:intron | 40.0% |
| AATCTGCTTAACAACGTCTG+GGG | + | chr5_3:5353815-5353834 | None:intergenic | 40.0% | |
| GTAATCTGCTTAACAACGTC+TGG | + | chr5_3:5353817-5353836 | None:intergenic | 40.0% | |
| GAAGAATCTGCAAGCTGCTA+GGG | + | chr5_3:5350886-5350905 | None:intergenic | 45.0% | |
| AGAAGAATCTGCAAGCTGCT+AGG | + | chr5_3:5350887-5350906 | None:intergenic | 45.0% | |
| !!! | GTGTGCTTTTTCTTCCGTGA+TGG | + | chr5_3:5350926-5350945 | None:intergenic | 45.0% |
| TCCCAAAATAAGGGCCCATT+TGG | + | chr5_3:5351542-5351561 | None:intergenic | 45.0% | |
| ACCAACAAAGGTAGGTTTGG+AGG | - | chr5_3:5351694-5351713 | Msa0793360:intron | 45.0% | |
| TCCTCCAAACCTACCTTTGT+TGG | + | chr5_3:5351698-5351717 | None:intergenic | 45.0% | |
| AGGAGCAGATCCACAAGATT+AGG | - | chr5_3:5351723-5351742 | Msa0793360:intron | 45.0% | |
| GCACGTCCAAAATCTTGAGA+AGG | - | chr5_3:5351763-5351782 | Msa0793360:intron | 45.0% | |
| GTCCAAAATCTTGAGAAGGG+TGG | - | chr5_3:5351767-5351786 | Msa0793360:intron | 45.0% | |
| ! | ACCCACCCTTCTCAAGATTT+TGG | + | chr5_3:5351772-5351791 | None:intergenic | 45.0% |
| GTGCTAAGGACAAGCATCTT+AGG | - | chr5_3:5351911-5351930 | Msa0793360:intron | 45.0% | |
| GACAAGCATCTTAGGGTCAA+GGG | - | chr5_3:5351919-5351938 | Msa0793360:intron | 45.0% | |
| GAGTAGGATTGAAGGACAAG+CGG | + | chr5_3:5352155-5352174 | None:intergenic | 45.0% | |
| CTCCATTGCATGTTATGTGG+AGG | - | chr5_3:5352172-5352191 | Msa0793360:intron | 45.0% | |
| ATATAGAGCACGGCACCATA+TGG | + | chr5_3:5352647-5352666 | None:intergenic | 45.0% | |
| !! | TGGTGCCGTGCTCTATATTA+TGG | - | chr5_3:5352649-5352668 | Msa0793360:intron | 45.0% |
| AATACCAGGTTCGATTCCCA+GGG | + | chr5_3:5352974-5352993 | None:intergenic | 45.0% | |
| GCTTCTTGTCTAGTATGGGT+TGG | - | chr5_3:5353336-5353355 | Msa0793360:intron | 45.0% | |
| CGTGCAAGTGATTCTATGTG+TGG | - | chr5_3:5353455-5353474 | Msa0793360:intron | 45.0% | |
| TCTGATCCTGTTCCAAGTCA+AGG | - | chr5_3:5353545-5353564 | Msa0793360:intron | 45.0% | |
| ATTTCCCATGCCACCTGAAT+TGG | - | chr5_3:5353574-5353593 | Msa0793360:intron | 45.0% | |
| TTTCCCATGCCACCTGAATT+GGG | - | chr5_3:5353575-5353594 | Msa0793360:intron | 45.0% | |
| CAATTCACACCCAATTCAGG+TGG | + | chr5_3:5353587-5353606 | None:intergenic | 45.0% | |
| ! | GTGTTGGTACCTGAAACAGA+AGG | + | chr5_3:5353739-5353758 | None:intergenic | 45.0% |
| ! | CTGTTTCAGGTACCAACACT+TGG | - | chr5_3:5353740-5353759 | Msa0793360:intron | 45.0% |
| TCAAGATCAAGCGTCAGCAA+TGG | + | chr5_3:5353878-5353897 | None:intergenic | 45.0% | |
| !!! | TTTCGGTTTTGGGACAAAGC+TGG | - | chr5_3:5353951-5353970 | Msa0793360:intron | 45.0% |
| ACCGCCGTCAATTTCCATCA+CGG | - | chr5_3:5350909-5350928 | Msa0793360:three_prime_UTR | 50.0% | |
| ! | TCCGTGATGGAAATTGACGG+CGG | + | chr5_3:5350913-5350932 | None:intergenic | 50.0% |
| !!! | GTTTTAGGGGCCGTTTGGAT+TGG | - | chr5_3:5351241-5351260 | Msa0793360:intron | 50.0% |
| GGTAGGTTTGGAGGATTCTC+AGG | - | chr5_3:5351703-5351722 | Msa0793360:intron | 50.0% | |
| !! | GTTTGTGCTGACTTGGTTCG+TGG | - | chr5_3:5351889-5351908 | Msa0793360:intron | 50.0% |
| !! | TGACTTGGTTCGTGGTGCTA+AGG | - | chr5_3:5351897-5351916 | Msa0793360:intron | 50.0% |
| GGACAAGCATCTTAGGGTCA+AGG | - | chr5_3:5351918-5351937 | Msa0793360:intron | 50.0% | |
| ACCTGTCAGGATGCCTACTA+AGG | - | chr5_3:5351942-5351961 | Msa0793360:intron | 50.0% | |
| ACCTTAGTAGGCATCCTGAC+AGG | + | chr5_3:5351946-5351965 | None:intergenic | 50.0% | |
| ACTACTAGGAAGACCCCTTG+TGG | - | chr5_3:5351976-5351995 | Msa0793360:intron | 50.0% | |
| ATTAGTCGCCCACCTTTGGT+GGG | + | chr5_3:5352908-5352927 | None:intergenic | 50.0% | |
| ATACCAGGTTCGATTCCCAG+GGG | + | chr5_3:5352973-5352992 | None:intergenic | 50.0% | |
| GAATACCAGGTTCGATTCCC+AGG | + | chr5_3:5352975-5352994 | None:intergenic | 50.0% | |
| GAATCGAACCTGGTATTCCC+CGG | - | chr5_3:5352977-5352996 | Msa0793360:CDS | 50.0% | |
| GACTATGGGCCTGTTTGGAT+TGG | + | chr5_3:5353213-5353232 | None:intergenic | 50.0% | |
| ACACCCAATTCAGGTGGCAT+GGG | + | chr5_3:5353581-5353600 | None:intergenic | 50.0% | |
| TTGAACTCCGTGTGCACAAG+AGG | - | chr5_3:5353770-5353789 | Msa0793360:intron | 50.0% | |
| TGAACTCCGTGTGCACAAGA+GGG | - | chr5_3:5353771-5353790 | Msa0793360:intron | 50.0% | |
| CAATGACCCTCTTGTGCACA+CGG | + | chr5_3:5353780-5353799 | None:intergenic | 50.0% | |
| CAACGTCTGGGGAACTGTAA+AGG | + | chr5_3:5353804-5353823 | None:intergenic | 50.0% | |
| ACCTCTATCACCATCGAACC+TGG | - | chr5_3:5353835-5353854 | Msa0793360:intron | 50.0% | |
| ACCAGGTTCGATGGTGATAG+AGG | + | chr5_3:5353839-5353858 | None:intergenic | 50.0% | |
| TTAGGGTCAAGGGACCTGTC+AGG | - | chr5_3:5351929-5351948 | Msa0793360:intron | 55.0% | |
| AGGAAGACCCCTTGTGGTGA+AGG | - | chr5_3:5351982-5352001 | Msa0793360:intron | 55.0% | |
| ! | ACTGGTTTCCGACCCACCAA+AGG | - | chr5_3:5352893-5352912 | Msa0793360:intron | 55.0% |
| GTTTCCGACCCACCAAAGGT+GGG | - | chr5_3:5352897-5352916 | Msa0793360:intron | 55.0% | |
| ! | GATTAGTCGCCCACCTTTGG+TGG | + | chr5_3:5352909-5352928 | None:intergenic | 55.0% |
| ! | CCAGATTAGTCGCCCACCTT+TGG | + | chr5_3:5352912-5352931 | None:intergenic | 55.0% |
| CCAAAGGTGGGCGACTAATC+TGG | - | chr5_3:5352909-5352928 | Msa0793360:intron | 55.0% | |
| ! | CTAATCTGGCTCGTGCGTAG+AGG | - | chr5_3:5352923-5352942 | Msa0793360:intron | 55.0% |
| TACCAGGTTCGATTCCCAGG+GGG | + | chr5_3:5352972-5352991 | None:intergenic | 55.0% | |
| GTATTCCCCGGATACGTCCT+TGG | - | chr5_3:5352989-5353008 | Msa0793360:CDS | 55.0% | |
| TCCTTCCAAGGACGTATCCG+GGG | + | chr5_3:5352997-5353016 | None:intergenic | 55.0% | |
| CTCCTTCCAAGGACGTATCC+GGG | + | chr5_3:5352998-5353017 | None:intergenic | 55.0% | |
| GCTCCTTCCAAGGACGTATC+CGG | + | chr5_3:5352999-5353018 | None:intergenic | 55.0% | |
| CACACCCAATTCAGGTGGCA+TGG | + | chr5_3:5353582-5353601 | None:intergenic | 55.0% | |
| AACCTCGACACCAGGTTCGA+TGG | + | chr5_3:5353848-5353867 | None:intergenic | 55.0% | |
| GGTTTCCGACCCACCAAAGG+TGG | - | chr5_3:5352896-5352915 | Msa0793360:intron | 60.0% | |
| ! | TGCCAAGCGTTGTTCCCCCT+GGG | - | chr5_3:5352955-5352974 | Msa0793360:CDS | 60.0% |
| TTCCCAGGGGGAACAACGCT+TGG | + | chr5_3:5352960-5352979 | None:intergenic | 60.0% | |
| TTCCCCCTGGGAATCGAACC+TGG | - | chr5_3:5352967-5352986 | Msa0793360:CDS | 60.0% | |
| GGACGTATCCGGGGAATACC+AGG | + | chr5_3:5352988-5353007 | None:intergenic | 60.0% | |
| TCCCCGGATACGTCCTTGGA+AGG | - | chr5_3:5352993-5353012 | Msa0793360:CDS | 60.0% | |
| GTGGCAAGGAGCTCCTTCCA+AGG | + | chr5_3:5353009-5353028 | None:intergenic | 60.0% | |
| TGGAAGGAGCTCCTTGCCAC+TGG | - | chr5_3:5353009-5353028 | Msa0793360:CDS | 60.0% | |
| TTGCTTGGGCTCCAGTGGCA+AGG | + | chr5_3:5353023-5353042 | None:intergenic | 60.0% | |
| ! | CACCATCGAACCTGGTGTCG+AGG | - | chr5_3:5353843-5353862 | Msa0793360:intron | 60.0% |
| ! | CGAACCTGGTGTCGAGGTTG+AGG | - | chr5_3:5353849-5353868 | Msa0793360:intron | 60.0% |
| GTCACCTCAACCTCGACACC+AGG | + | chr5_3:5353856-5353875 | None:intergenic | 60.0% | |
| ! | GTCGCCCACCTTTGGTGGGT+CGG | + | chr5_3:5352904-5352923 | None:intergenic | 65.0% |
| ! | CTGCCAAGCGTTGTTCCCCC+TGG | - | chr5_3:5352954-5352973 | Msa0793360:CDS | 65.0% |
| CCAGGTTGCTTGGGCTCCAG+TGG | + | chr5_3:5353028-5353047 | None:intergenic | 65.0% | |
| CCACTGGAGCCCAAGCAACC+TGG | - | chr5_3:5353025-5353044 | Msa0793360:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 5350863 | 5354091 | 5350863 | ID=Msa0793360;Name=Msa0793360 |
| chr5_3 | mRNA | 5350863 | 5354091 | 5350863 | ID=Msa0793360-mRNA-1;Parent=Msa0793360;Name=Msa0793360-mRNA-1;_AED=0.02;_eAED=0.02;_QI=98|1|1|1|0.66|0.5|4|200|123 |
| chr5_3 | exon | 5350863 | 5351205 | 5350863 | ID=Msa0793360-mRNA-1:exon:2069;Parent=Msa0793360-mRNA-1 |
| chr5_3 | exon | 5352951 | 5353064 | 5352951 | ID=Msa0793360-mRNA-1:exon:2068;Parent=Msa0793360-mRNA-1 |
| chr5_3 | exon | 5353169 | 5353297 | 5353169 | ID=Msa0793360-mRNA-1:exon:2067;Parent=Msa0793360-mRNA-1 |
| chr5_3 | exon | 5354008 | 5354091 | 5354008 | ID=Msa0793360-mRNA-1:exon:2066;Parent=Msa0793360-mRNA-1 |
| chr5_3 | five_prime_UTR | 5354008 | 5354091 | 5354008 | ID=Msa0793360-mRNA-1:five_prime_utr;Parent=Msa0793360-mRNA-1 |
| chr5_3 | five_prime_UTR | 5353284 | 5353297 | 5353284 | ID=Msa0793360-mRNA-1:five_prime_utr;Parent=Msa0793360-mRNA-1 |
| chr5_3 | CDS | 5353169 | 5353283 | 5353169 | ID=Msa0793360-mRNA-1:cds;Parent=Msa0793360-mRNA-1 |
| chr5_3 | CDS | 5352951 | 5353064 | 5352951 | ID=Msa0793360-mRNA-1:cds;Parent=Msa0793360-mRNA-1 |
| chr5_3 | CDS | 5351063 | 5351205 | 5351063 | ID=Msa0793360-mRNA-1:cds;Parent=Msa0793360-mRNA-1 |
| chr5_3 | three_prime_UTR | 5350863 | 5351062 | 5350863 | ID=Msa0793360-mRNA-1:three_prime_utr;Parent=Msa0793360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
