Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0256350 | XP_003596745.1 | 99.187 | 123 | 1 | 0 | 1 | 123 | 1 | 123 | 9.95e-84 | 250 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0256350 | sp|Q9STY6|RS202_ARATH | 87.500 | 120 | 15 | 0 | 4 | 123 | 3 | 122 | 5.27e-73 | 216 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0256350 | G7IRA1 | 99.187 | 123 | 1 | 0 | 1 | 123 | 1 | 123 | 4.75e-84 | 250 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0042510 | Msa0256350 | 0.835706 | 1.435145e-56 | -8.615850e-47 |
| Msa0079560 | Msa0256350 | 0.838890 | 2.197339e-57 | -8.615850e-47 |
| Msa0127230 | Msa0256350 | 0.832925 | 7.154611e-56 | -8.615850e-47 |
| Msa0256350 | Msa0373350 | 0.823017 | 1.736582e-53 | -8.615850e-47 |
| Msa0256350 | Msa0376850 | 0.812104 | 5.014056e-51 | -8.615850e-47 |
| Msa0256350 | Msa0377610 | 0.846871 | 1.653640e-59 | -8.615850e-47 |
| Msa0256350 | Msa0421920 | 0.808401 | 3.153359e-50 | -8.615850e-47 |
| Msa0256350 | Msa0426820 | 0.828831 | 7.224117e-55 | -8.615850e-47 |
| Msa0256350 | Msa0467740 | 0.827245 | 1.739957e-54 | -8.615850e-47 |
| Msa0256350 | Msa0511760 | 0.833233 | 5.999565e-56 | -8.615850e-47 |
| Msa0256350 | Msa0514130 | 0.819229 | 1.296074e-52 | -8.615850e-47 |
| Msa0256350 | Msa0516830 | 0.812013 | 5.247559e-51 | -8.615850e-47 |
| Msa0256350 | Msa0574780 | 0.809400 | 1.927952e-50 | -8.615850e-47 |
| Msa0256350 | Msa0578010 | 0.819496 | 1.126623e-52 | -8.615850e-47 |
| Msa0256350 | Msa0619230 | 0.833397 | 5.461549e-56 | -8.615850e-47 |
| Msa0256350 | Msa0621190 | 0.840696 | 7.441512e-58 | -8.615850e-47 |
| Msa0256350 | Msa0656450 | 0.843892 | 1.059704e-58 | -8.615850e-47 |
| Msa0256350 | Msa0691760 | 0.839072 | 1.972149e-57 | -8.615850e-47 |
| Msa0256350 | Msa0700370 | 0.846981 | 1.543295e-59 | -8.615850e-47 |
| Msa0256350 | Msa0793360 | 0.824077 | 9.815220e-54 | -8.615850e-47 |
| Msa0256350 | Msa0930360 | 0.808764 | 2.638251e-50 | -8.615850e-47 |
| Msa0256350 | Msa1144630 | 0.808133 | 3.597107e-50 | -8.615850e-47 |
| Msa0256350 | Msa1165700 | 0.827661 | 1.383100e-54 | -8.615850e-47 |
| Msa0256350 | Msa1235950 | 0.814246 | 1.698340e-51 | -8.615850e-47 |
| Msa0256350 | Msa1235980 | 0.818461 | 1.937141e-52 | -8.615850e-47 |
| Msa0256350 | Msa1284800 | 0.822679 | 2.082599e-53 | -8.615850e-47 |
| Msa0256350 | Msa1316100 | 0.802595 | 5.206624e-49 | -8.615850e-47 |
| Msa0256350 | Msa1363930 | 0.809668 | 1.688447e-50 | -8.615850e-47 |
| Msa0256350 | Msa1387750 | 0.833089 | 6.514261e-56 | -8.615850e-47 |
| Msa0256350 | Msa1390760 | 0.832565 | 8.790561e-56 | -8.615850e-47 |
| Msa0256350 | Msa1407550 | 0.829166 | 5.992745e-55 | -8.615850e-47 |
| Msa0256350 | Msa1413570 | 0.842114 | 3.149875e-58 | -8.615850e-47 |
| Msa0256350 | Msa1465700 | 0.807466 | 4.987023e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0256350 | MtrunA17_Chr2g0317541 | 99.187 | 123 | 1 | 0 | 1 | 123 | 1 | 123 | 9.15e-88 | 250 |
| Msa0256350 | MtrunA17_Chr1g0197931 | 99.187 | 123 | 1 | 0 | 1 | 123 | 1 | 123 | 9.15e-88 | 250 |
| Msa0256350 | MtrunA17_Chr4g0018141 | 96.667 | 120 | 4 | 0 | 4 | 123 | 3 | 122 | 1.60e-83 | 239 |
| Msa0256350 | MtrunA17_Chr7g0258291 | 96.667 | 120 | 4 | 0 | 4 | 123 | 3 | 122 | 3.06e-83 | 239 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0256350 | AT3G47370.3 | 87.500 | 120 | 15 | 0 | 4 | 123 | 3 | 122 | 5.36e-74 | 216 |
| Msa0256350 | AT3G47370.2 | 87.500 | 120 | 15 | 0 | 4 | 123 | 3 | 122 | 5.36e-74 | 216 |
| Msa0256350 | AT3G47370.1 | 87.500 | 120 | 15 | 0 | 4 | 123 | 3 | 122 | 5.36e-74 | 216 |
| Msa0256350 | AT5G62300.1 | 86.290 | 124 | 16 | 1 | 1 | 123 | 1 | 124 | 5.72e-74 | 216 |
| Msa0256350 | AT5G62300.2 | 86.290 | 124 | 16 | 1 | 1 | 123 | 1 | 124 | 5.72e-74 | 216 |
| Msa0256350 | AT3G45030.1 | 86.290 | 124 | 16 | 1 | 1 | 123 | 1 | 124 | 5.72e-74 | 216 |
Find 48 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGCACCCTTCTCAAGATTT+TGG | 0.163280 | 2_2:-51075294 | None:intergenic |
| GTGCTAAGGACAAGCATCTT+AGG | 0.246369 | 2_2:+51075436 | Msa0256350:CDS |
| TCCTCCAAACCTACCTTTGT+TGG | 0.379765 | 2_2:-51075220 | None:intergenic |
| AAAACCAACAAAGGTAGGTT+TGG | 0.397934 | 2_2:+51075216 | Msa0256350:CDS |
| CTGTTTCAGGTACCAACACT+TGG | 0.402075 | 2_2:+51077187 | Msa0256350:intron |
| GTAATCTGCTTAACAACGTC+TGG | 0.415218 | 2_2:-51077261 | None:intergenic |
| TTGAACTCCGTGTGCACAAG+AGG | 0.436894 | 2_2:+51077217 | Msa0256350:CDS |
| GGTAGGTTTGGAGGATTCTC+AGG | 0.443866 | 2_2:+51075228 | Msa0256350:CDS |
| AGGAGCAGATCCACAAGATT+AGG | 0.453895 | 2_2:+51075248 | Msa0256350:CDS |
| GTTGTTAGTTTGTGCTGACT+TGG | 0.466618 | 2_2:+51075407 | Msa0256350:intron |
| AGGTTCTTCACATTACTACT+AGG | 0.481361 | 2_2:+51075487 | Msa0256350:CDS |
| GTAATGTGAAGAACCTTAGT+AGG | 0.488319 | 2_2:-51075480 | None:intergenic |
| ACCAGGTTCGATGGTGATAG+AGG | 0.489959 | 2_2:-51077283 | None:intergenic |
| CGAACCTGGTGTCGAGGTTG+AGG | 0.496706 | 2_2:+51077296 | Msa0256350:CDS |
| GAAGAATCTGCAAGCTGCTA+GGG | 0.497571 | 2_2:-51074407 | None:intergenic |
| ACCAACAAAGGTAGGTTTGG+AGG | 0.499020 | 2_2:+51075219 | Msa0256350:CDS |
| CAACGTCTGGGGAACTGTAA+AGG | 0.512765 | 2_2:-51077248 | None:intergenic |
| ACCTGTCAGGATGCCTACTA+AGG | 0.514666 | 2_2:+51075467 | Msa0256350:CDS |
| AGAAGAATCTGCAAGCTGCT+AGG | 0.514710 | 2_2:-51074408 | None:intergenic |
| ACCTCTATCACCATCGAACC+TGG | 0.519945 | 2_2:+51077282 | Msa0256350:CDS |
| GTTTGTGCTGACTTGGTTCG+TGG | 0.525514 | 2_2:+51075414 | Msa0256350:intron |
| GCTATAAAACCAACAAAGGT+AGG | 0.526218 | 2_2:+51075211 | Msa0256350:CDS |
| TGCTAAGGACAAGCATCTTA+GGG | 0.529942 | 2_2:+51075437 | Msa0256350:CDS |
| TTAGGGTCAAGGGACCTGTC+AGG | 0.530594 | 2_2:+51075454 | Msa0256350:CDS |
| AGGAAGACCCCTTGTGGTGA+AGG | 0.532764 | 2_2:+51075507 | Msa0256350:CDS |
| TCTTCCGTGATGGAAATTGA+CGG | 0.538720 | 2_2:-51074437 | None:intergenic |
| TAATCTGCTTAACAACGTCT+GGG | 0.545211 | 2_2:-51077260 | None:intergenic |
| TGACTTGGTTCGTGGTGCTA+AGG | 0.550440 | 2_2:+51075422 | Msa0256350:CDS |
| AACCTCGACACCAGGTTCGA+TGG | 0.552766 | 2_2:-51077292 | None:intergenic |
| ACCTTAGTAGGCATCCTGAC+AGG | 0.553261 | 2_2:-51075468 | None:intergenic |
| GTCACCTCAACCTCGACACC+AGG | 0.559183 | 2_2:-51077300 | None:intergenic |
| CACCATCGAACCTGGTGTCG+AGG | 0.559437 | 2_2:+51077290 | Msa0256350:CDS |
| GGACAAGCATCTTAGGGTCA+AGG | 0.562678 | 2_2:+51075443 | Msa0256350:CDS |
| CAATGACCCTCTTGTGCACA+CGG | 0.568374 | 2_2:-51077224 | None:intergenic |
| AGAGAGTGATCCTAATCTTG+TGG | 0.570336 | 2_2:-51075258 | None:intergenic |
| GACAAGCATCTTAGGGTCAA+GGG | 0.571703 | 2_2:+51075444 | Msa0256350:CDS |
| GCACGTCCAAAATCTTGAGA+AGG | 0.572845 | 2_2:+51075288 | Msa0256350:CDS |
| TTCAAATCTATCCCAAGTGT+TGG | 0.578144 | 2_2:-51077199 | None:intergenic |
| CACGTCCAAAATCTTGAGAA+GGG | 0.584353 | 2_2:+51075289 | Msa0256350:CDS |
| TGTTTCAGGTACCAACACTT+GGG | 0.590556 | 2_2:+51077188 | Msa0256350:intron |
| TGCTGCTATAAAACCAACAA+AGG | 0.618513 | 2_2:+51075207 | Msa0256350:CDS |
| TCAAGATCAAGCGTCAGCAA+TGG | 0.636081 | 2_2:-51077322 | None:intergenic |
| AATCATAACAAGTTAAAACT+CGG | 0.638243 | 2_2:-51077346 | None:intergenic |
| ACCGCCGTCAATTTCCATCA+CGG | 0.646226 | 2_2:+51074433 | Msa0256350:five_prime_UTR |
| TGAACTCCGTGTGCACAAGA+GGG | 0.668892 | 2_2:+51077218 | Msa0256350:CDS |
| ACTACTAGGAAGACCCCTTG+TGG | 0.691181 | 2_2:+51075501 | Msa0256350:CDS |
| AATCTGCTTAACAACGTCTG+GGG | 0.738536 | 2_2:-51077259 | None:intergenic |
| TCCGTGATGGAAATTGACGG+CGG | 0.742173 | 2_2:-51074434 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGATTATGAATTATATTTT+GGG | - | chr2_2:51076957-51076976 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTATTGTTTGCAT+TGG | + | chr2_2:51074676-51074695 | Msa0256350:intron | 15.0% |
| !!! | TAAAATTTGTTTTTATTGTG+TGG | + | chr2_2:51075560-51075579 | Msa0256350:intron | 15.0% |
| !! | TTATGGATTTAATGATTTAT+AGG | + | chr2_2:51075848-51075867 | Msa0256350:intron | 15.0% |
| !! | TATGGATTTAATGATTTATA+GGG | + | chr2_2:51075849-51075868 | Msa0256350:intron | 15.0% |
| !! | ATAATTTATGATATATTCAC+AGG | + | chr2_2:51075890-51075909 | Msa0256350:intron | 15.0% |
| !! | TTTACTATAAAAATAGTTGA+TGG | - | chr2_2:51076283-51076302 | None:intergenic | 15.0% |
| !!! | TAAAAGTTAAACTGTTTTTT+TGG | + | chr2_2:51076311-51076330 | Msa0256350:intron | 15.0% |
| !!! | TTTTATCTCATTTTTTTGAA+TGG | + | chr2_2:51076683-51076702 | Msa0256350:intron | 15.0% |
| !!! | AGATTATGAATTATATTTTG+GGG | - | chr2_2:51076956-51076975 | None:intergenic | 15.0% |
| !!! | CAAGATTATGAATTATATTT+TGG | - | chr2_2:51076958-51076977 | None:intergenic | 15.0% |
| !!! | GGATTAATAATTTGAGTTAT+AGG | + | chr2_2:51074530-51074549 | Msa0256350:intron | 20.0% |
| !! | TAACACAATTGAAAACAAAA+GGG | - | chr2_2:51074576-51074595 | None:intergenic | 20.0% |
| !!! | AATACTCAGTTATAGTTTTA+GGG | + | chr2_2:51074752-51074771 | Msa0256350:intron | 20.0% |
| !!! | TCACTAAATATGCTTATTTT+TGG | + | chr2_2:51075367-51075386 | Msa0256350:intron | 20.0% |
| !! | AATGTAATGAAAGTAGTAAT+AGG | + | chr2_2:51075783-51075802 | Msa0256350:intron | 20.0% |
| !!! | TTTTCTCAAAAATAGCAAAA+AGG | + | chr2_2:51076031-51076050 | Msa0256350:intron | 20.0% |
| !! | GAGATAAAAATTTAGACTAT+GGG | - | chr2_2:51076672-51076691 | None:intergenic | 20.0% |
| !! | TGAGATAAAAATTTAGACTA+TGG | - | chr2_2:51076673-51076692 | None:intergenic | 20.0% |
| !! | TTGTGTAGTTATTTATATCA+TGG | + | chr2_2:51076825-51076844 | Msa0256350:intron | 20.0% |
| !! | AATCATAACAAGTTAAAACT+CGG | - | chr2_2:51077349-51077368 | None:intergenic | 20.0% |
| !! | ACTACAAAAATATAGGAAAT+AGG | - | chr2_2:51077379-51077398 | None:intergenic | 20.0% |
| !!! | TTCCTATATTTTTGTAGTTT+CGG | + | chr2_2:51077381-51077400 | Msa0256350:three_prime_UTR | 20.0% |
| ! | GTAACACAATTGAAAACAAA+AGG | - | chr2_2:51074577-51074596 | None:intergenic | 25.0% |
| ! | TCAAAAAACATCGAACAAAA+CGG | - | chr2_2:51074601-51074620 | None:intergenic | 25.0% |
| !!! | TTTTGTTCGATGTTTTTTGA+TGG | + | chr2_2:51074601-51074620 | Msa0256350:intron | 25.0% |
| !! | CAATACTCAGTTATAGTTTT+AGG | + | chr2_2:51074751-51074770 | Msa0256350:intron | 25.0% |
| !!! | ATACTCAGTTATAGTTTTAG+GGG | + | chr2_2:51074753-51074772 | Msa0256350:intron | 25.0% |
| ! | AAAAAATAAGCCAATCCAAA+CGG | - | chr2_2:51074779-51074798 | None:intergenic | 25.0% |
| !! | AGCTTTTATATAGCTTTTCA+AGG | + | chr2_2:51074831-51074850 | Msa0256350:intron | 25.0% |
| ! | AAAAATAAGCCAATCCAAAT+GGG | + | chr2_2:51075050-51075069 | Msa0256350:intron | 25.0% |
| !! | CATAACATCTATCTTTTGAA+CGG | - | chr2_2:51075092-51075111 | None:intergenic | 25.0% |
| ! | AAAGATAGATGTTATGTTAC+TGG | + | chr2_2:51075096-51075115 | Msa0256350:intron | 25.0% |
| !! | ATAATTTTCTCAGTTGTACT+CGG | + | chr2_2:51075169-51075188 | Msa0256350:intron | 25.0% |
| ! | GGAAAAACACAATTAAAATC+AGG | - | chr2_2:51075659-51075678 | None:intergenic | 25.0% |
| ! | AAATGGTTTCACAAAATTCA+TGG | + | chr2_2:51075722-51075741 | Msa0256350:intron | 25.0% |
| !! | AGCTATTGAAAGAGTTTTTA+TGG | + | chr2_2:51075831-51075850 | Msa0256350:intron | 25.0% |
| !! | AAAACAGTTTAACTTTAACC+AGG | - | chr2_2:51076491-51076510 | None:intergenic | 25.0% |
| !!! | TTTGAATGGTATTTGCTATT+TGG | + | chr2_2:51076697-51076716 | Msa0256350:intron | 25.0% |
| ! | GAAATTATATTTCCTTGACT+TGG | - | chr2_2:51077006-51077025 | None:intergenic | 25.0% |
| ! | AACCGAAACTACAAAAATAT+AGG | - | chr2_2:51077386-51077405 | None:intergenic | 25.0% |
| !!! | TATTTTTGTAGTTTCGGTTT+TGG | + | chr2_2:51077387-51077406 | Msa0256350:three_prime_UTR | 25.0% |
| !! | ATTTTTGTAGTTTCGGTTTT+GGG | + | chr2_2:51077388-51077407 | Msa0256350:three_prime_UTR | 25.0% |
| CATTTCTATACTCATAGCAT+TGG | + | chr2_2:51074509-51074528 | Msa0256350:intron | 30.0% | |
| AAAAAACATCGAACAAAACG+GGG | - | chr2_2:51074599-51074618 | None:intergenic | 30.0% | |
| CAAAAAACATCGAACAAAAC+GGG | - | chr2_2:51074600-51074619 | None:intergenic | 30.0% | |
| !! | GTTTTAACGCTACTTCAATT+TGG | + | chr2_2:51074632-51074651 | Msa0256350:intron | 30.0% |
| AAAATTCATGTGCAACTACA+TGG | - | chr2_2:51074731-51074750 | None:intergenic | 30.0% | |
| TAGTATTCATAAGCTTGTCA+AGG | + | chr2_2:51074922-51074941 | Msa0256350:intron | 30.0% | |
| CAAAAATAAGCCAATCCAAA+TGG | + | chr2_2:51075049-51075068 | Msa0256350:intron | 30.0% | |
| AAAAAGAAGCAGAACACAAA+AGG | - | chr2_2:51075596-51075615 | None:intergenic | 30.0% | |
| GATTTAATGACAGTAGTGAT+AGG | + | chr2_2:51075746-51075765 | Msa0256350:intron | 30.0% | |
| !! | AAATCATCTCTAGAAGCATT+TGG | - | chr2_2:51075971-51075990 | None:intergenic | 30.0% |
| ACTGAAAAATACAACTAGAC+AGG | - | chr2_2:51076062-51076081 | None:intergenic | 30.0% | |
| TAGACTTGCAAAACACAAAA+AGG | - | chr2_2:51076103-51076122 | None:intergenic | 30.0% | |
| !! | TTCTATCTCTTCAGTTTTAG+TGG | + | chr2_2:51076137-51076156 | Msa0256350:intron | 30.0% |
| ATTTGTTCTATCTACAAGCA+CGG | - | chr2_2:51076182-51076201 | None:intergenic | 30.0% | |
| TGCTTGTAGATAGAACAAAT+AGG | + | chr2_2:51076182-51076201 | Msa0256350:intron | 30.0% | |
| GCTTGTAGATAGAACAAATA+GGG | + | chr2_2:51076183-51076202 | Msa0256350:intron | 30.0% | |
| AATAAGATCCTTATCCAAAC+AGG | - | chr2_2:51076209-51076228 | None:intergenic | 30.0% | |
| !! | GTTGTTTTCATGAACTATCT+TGG | + | chr2_2:51076525-51076544 | Msa0256350:intron | 30.0% |
| !!! | TGAATTATATTTTGGGGCTT+GGG | - | chr2_2:51076950-51076969 | None:intergenic | 30.0% |
| !!! | ATGAATTATATTTTGGGGCT+TGG | - | chr2_2:51076951-51076970 | None:intergenic | 30.0% |
| ACTTCAAAAATCAAGTCAGA+AGG | - | chr2_2:51077102-51077121 | None:intergenic | 30.0% | |
| ! | AAGTATTGTGTTCAATGTGT+AGG | + | chr2_2:51077118-51077137 | Msa0256350:intron | 30.0% |
| GAGCTTATGAACTAACATGA+AGG | + | chr2_2:51074992-51075011 | Msa0256350:intron | 35.0% | |
| TGAACGGAATCCCAAAATAA+GGG | - | chr2_2:51075076-51075095 | None:intergenic | 35.0% | |
| TTGAACGGAATCCCAAAATA+AGG | - | chr2_2:51075077-51075096 | None:intergenic | 35.0% | |
| GTTACTGGCATGTTACATTA+TGG | + | chr2_2:51075111-51075130 | Msa0256350:intron | 35.0% | |
| TGCTGCTATAAAACCAACAA+AGG | + | chr2_2:51075207-51075226 | Msa0256350:CDS | 35.0% | |
| GCTATAAAACCAACAAAGGT+AGG | + | chr2_2:51075211-51075230 | Msa0256350:CDS | 35.0% | |
| AAAACCAACAAAGGTAGGTT+TGG | + | chr2_2:51075216-51075235 | Msa0256350:CDS | 35.0% | |
| GTAATGTGAAGAACCTTAGT+AGG | - | chr2_2:51075483-51075502 | None:intergenic | 35.0% | |
| AGGTTCTTCACATTACTACT+AGG | + | chr2_2:51075487-51075506 | Msa0256350:CDS | 35.0% | |
| ! | ATGTTTTACCTTCACCACAA+GGG | - | chr2_2:51075518-51075537 | None:intergenic | 35.0% |
| ! | AATGTTTTACCTTCACCACA+AGG | - | chr2_2:51075519-51075538 | None:intergenic | 35.0% |
| CATGTTATGTGGAGGTTAAA+TGG | + | chr2_2:51075705-51075724 | Msa0256350:intron | 35.0% | |
| AACTCTTTCAATAGCTCACT+AGG | - | chr2_2:51075827-51075846 | None:intergenic | 35.0% | |
| ATGATATATTCACAGGCTGT+TGG | + | chr2_2:51075897-51075916 | Msa0256350:intron | 35.0% | |
| TATAAAGTTAGCTGCAACAG+TGG | + | chr2_2:51075998-51076017 | Msa0256350:intron | 35.0% | |
| CTCAAAAATAGCAAAAAGGC+TGG | + | chr2_2:51076035-51076054 | Msa0256350:intron | 35.0% | |
| CAAAAAGGAAAGAGAAGTCT+AGG | - | chr2_2:51076088-51076107 | None:intergenic | 35.0% | |
| TAGTGGAAAGATGTTCCATA+TGG | + | chr2_2:51076154-51076173 | Msa0256350:intron | 35.0% | |
| !!! | TGTTTTTTTGGCTTTCACAC+TGG | + | chr2_2:51076323-51076342 | Msa0256350:intron | 35.0% |
| TAACTTTAACCAGGTTGCTT+GGG | - | chr2_2:51076482-51076501 | None:intergenic | 35.0% | |
| TTAACTTTAACCAGGTTGCT+TGG | - | chr2_2:51076483-51076502 | None:intergenic | 35.0% | |
| CATAAGTTGTGAGACTGTTT+GGG | - | chr2_2:51076613-51076632 | None:intergenic | 35.0% | |
| TCAAATAAGCCAATCCAAAC+AGG | + | chr2_2:51076646-51076665 | Msa0256350:intron | 35.0% | |
| ACTTGAATCTGAATCTTCCT+CGG | + | chr2_2:51076721-51076740 | Msa0256350:intron | 35.0% | |
| ATCACTTGCACGATAAGAAA+AGG | - | chr2_2:51076893-51076912 | None:intergenic | 35.0% | |
| ! | ATGGTTTGTGAGAATTCACA+TGG | + | chr2_2:51076924-51076943 | Msa0256350:intron | 35.0% |
| !! | ATATTTCCTTGACTTGGAAC+AGG | - | chr2_2:51077000-51077019 | None:intergenic | 35.0% |
| ATACAATTCACACCCAATTC+AGG | - | chr2_2:51077037-51077056 | None:intergenic | 35.0% | |
| GGCTAACTAACACATATTGT+TGG | - | chr2_2:51077081-51077100 | None:intergenic | 35.0% | |
| TTCAAATCTATCCCAAGTGT+TGG | - | chr2_2:51077202-51077221 | None:intergenic | 35.0% | |
| TAATCTGCTTAACAACGTCT+GGG | - | chr2_2:51077263-51077282 | None:intergenic | 35.0% | |
| !!! | GTTCGTTAGTTTTACAGTGT+TGG | + | chr2_2:51077426-51077445 | Msa0256350:three_prime_UTR | 35.0% |
| ! | TCTTCCGTGATGGAAATTGA+CGG | - | chr2_2:51074440-51074459 | None:intergenic | 40.0% |
| !!! | TTATAGTTTTAGGGGCCGTT+TGG | + | chr2_2:51074761-51074780 | Msa0256350:intron | 40.0% |
| TTGCATAAGCTCAAAACTGC+TGG | - | chr2_2:51074871-51074890 | None:intergenic | 40.0% | |
| AAATAAGGGCCCATTTGGAT+TGG | - | chr2_2:51075062-51075081 | None:intergenic | 40.0% | |
| !! | ATCCAAATGGGCCCTTATTT+TGG | + | chr2_2:51075062-51075081 | Msa0256350:intron | 40.0% |
| !!! | TCCAAATGGGCCCTTATTTT+GGG | + | chr2_2:51075063-51075082 | Msa0256350:intron | 40.0% |
| CTCAGTTGTACTCGGAAAAA+TGG | + | chr2_2:51075177-51075196 | Msa0256350:intron | 40.0% | |
| AGAGAGTGATCCTAATCTTG+TGG | - | chr2_2:51075261-51075280 | None:intergenic | 40.0% | |
| ! | AAGATTTTGGACGTGCTTAG+AGG | - | chr2_2:51075284-51075303 | None:intergenic | 40.0% |
| CACGTCCAAAATCTTGAGAA+GGG | + | chr2_2:51075289-51075308 | Msa0256350:CDS | 40.0% | |
| !! | GTTGTTAGTTTGTGCTGACT+TGG | + | chr2_2:51075407-51075426 | Msa0256350:intron | 40.0% |
| TGCTAAGGACAAGCATCTTA+GGG | + | chr2_2:51075437-51075456 | Msa0256350:CDS | 40.0% | |
| ! | TGTTTTACCTTCACCACAAG+GGG | - | chr2_2:51075517-51075536 | None:intergenic | 40.0% |
| ATGCAATGGAGTAGGATTGA+AGG | - | chr2_2:51075688-51075707 | None:intergenic | 40.0% | |
| CACATAACATGCAATGGAGT+AGG | - | chr2_2:51075696-51075715 | None:intergenic | 40.0% | |
| CTACTCCATTGCATGTTATG+TGG | + | chr2_2:51075694-51075713 | Msa0256350:intron | 40.0% | |
| AACCTCCACATAACATGCAA+TGG | - | chr2_2:51075702-51075721 | None:intergenic | 40.0% | |
| TAGAACAAATAGGGCCTGTT+TGG | + | chr2_2:51076192-51076211 | Msa0256350:intron | 40.0% | |
| AAATAGGGCCTGTTTGGATA+AGG | + | chr2_2:51076198-51076217 | Msa0256350:intron | 40.0% | |
| GCATAAGTTGTGAGACTGTT+TGG | - | chr2_2:51076614-51076633 | None:intergenic | 40.0% | |
| GCTTATTTGAGCTTGTCTAC+TGG | - | chr2_2:51076636-51076655 | None:intergenic | 40.0% | |
| ATTTAGACTATGGGCCTGTT+TGG | - | chr2_2:51076663-51076682 | None:intergenic | 40.0% | |
| ATAGCACAAACAATTAGCCG+AGG | - | chr2_2:51076741-51076760 | None:intergenic | 40.0% | |
| TGAATGCTTCTTGTCTAGCA+TGG | + | chr2_2:51076776-51076795 | Msa0256350:intron | 40.0% | |
| GAATGCTTCTTGTCTAGCAT+GGG | + | chr2_2:51076777-51076796 | Msa0256350:intron | 40.0% | |
| GCTATTCTCTTCTTTGTGTG+TGG | + | chr2_2:51076847-51076866 | Msa0256350:intron | 40.0% | |
| CAAGTGATTCTATGTGTGGA+TGG | + | chr2_2:51076905-51076924 | Msa0256350:intron | 40.0% | |
| TATGAGCTTCCTTCTGTTTC+AGG | + | chr2_2:51077174-51077193 | Msa0256350:intron | 40.0% | |
| ! | TGTTTCAGGTACCAACACTT+GGG | + | chr2_2:51077188-51077207 | Msa0256350:intron | 40.0% |
| AATCTGCTTAACAACGTCTG+GGG | - | chr2_2:51077262-51077281 | None:intergenic | 40.0% | |
| GTAATCTGCTTAACAACGTC+TGG | - | chr2_2:51077264-51077283 | None:intergenic | 40.0% | |
| GAAGAATCTGCAAGCTGCTA+GGG | - | chr2_2:51074410-51074429 | None:intergenic | 45.0% | |
| AGAAGAATCTGCAAGCTGCT+AGG | - | chr2_2:51074411-51074430 | None:intergenic | 45.0% | |
| !!! | GTGTGCTTTTTCTTCCGTGA+TGG | - | chr2_2:51074450-51074469 | None:intergenic | 45.0% |
| TCCCAAAATAAGGGCCCATT+TGG | - | chr2_2:51075067-51075086 | None:intergenic | 45.0% | |
| ACCAACAAAGGTAGGTTTGG+AGG | + | chr2_2:51075219-51075238 | Msa0256350:CDS | 45.0% | |
| TCCTCCAAACCTACCTTTGT+TGG | - | chr2_2:51075223-51075242 | None:intergenic | 45.0% | |
| AGGAGCAGATCCACAAGATT+AGG | + | chr2_2:51075248-51075267 | Msa0256350:CDS | 45.0% | |
| GCACGTCCAAAATCTTGAGA+AGG | + | chr2_2:51075288-51075307 | Msa0256350:CDS | 45.0% | |
| ! | ACGCACCCTTCTCAAGATTT+TGG | - | chr2_2:51075297-51075316 | None:intergenic | 45.0% |
| GTGCTAAGGACAAGCATCTT+AGG | + | chr2_2:51075436-51075455 | Msa0256350:CDS | 45.0% | |
| GACAAGCATCTTAGGGTCAA+GGG | + | chr2_2:51075444-51075463 | Msa0256350:CDS | 45.0% | |
| GAGTAGGATTGAAGGACAAG+CGG | - | chr2_2:51075680-51075699 | None:intergenic | 45.0% | |
| CTCCATTGCATGTTATGTGG+AGG | + | chr2_2:51075697-51075716 | Msa0256350:intron | 45.0% | |
| ATACCAGGTTCGATTCCCAA+GGG | - | chr2_2:51076418-51076437 | None:intergenic | 45.0% | |
| AATACCAGGTTCGATTCCCA+AGG | - | chr2_2:51076419-51076438 | None:intergenic | 45.0% | |
| !! | GTCTAGCATGGGTTGGAAAT+TGG | + | chr2_2:51076788-51076807 | Msa0256350:intron | 45.0% |
| CGTGCAAGTGATTCTATGTG+TGG | + | chr2_2:51076901-51076920 | Msa0256350:intron | 45.0% | |
| TCTGATCCTGTTCCAAGTCA+AGG | + | chr2_2:51076991-51077010 | Msa0256350:intron | 45.0% | |
| ATTTCCCATGCCACCTGAAT+TGG | + | chr2_2:51077021-51077040 | Msa0256350:intron | 45.0% | |
| TTTCCCATGCCACCTGAATT+GGG | + | chr2_2:51077022-51077041 | Msa0256350:intron | 45.0% | |
| CAATTCACACCCAATTCAGG+TGG | - | chr2_2:51077034-51077053 | None:intergenic | 45.0% | |
| ! | GTGTTGGTACCTGAAACAGA+AGG | - | chr2_2:51077186-51077205 | None:intergenic | 45.0% |
| ! | CTGTTTCAGGTACCAACACT+TGG | + | chr2_2:51077187-51077206 | Msa0256350:intron | 45.0% |
| TCAAGATCAAGCGTCAGCAA+TGG | - | chr2_2:51077325-51077344 | None:intergenic | 45.0% | |
| !!! | TTTCGGTTTTGGGACAAAGC+TGG | + | chr2_2:51077398-51077417 | Msa0256350:three_prime_UTR | 45.0% |
| ACCGCCGTCAATTTCCATCA+CGG | + | chr2_2:51074433-51074452 | Msa0256350:five_prime_UTR | 50.0% | |
| ! | TCCGTGATGGAAATTGACGG+CGG | - | chr2_2:51074437-51074456 | None:intergenic | 50.0% |
| !!! | GTTTTAGGGGCCGTTTGGAT+TGG | + | chr2_2:51074766-51074785 | Msa0256350:intron | 50.0% |
| GGTAGGTTTGGAGGATTCTC+AGG | + | chr2_2:51075228-51075247 | Msa0256350:CDS | 50.0% | |
| !! | GTTTGTGCTGACTTGGTTCG+TGG | + | chr2_2:51075414-51075433 | Msa0256350:intron | 50.0% |
| !! | TGACTTGGTTCGTGGTGCTA+AGG | + | chr2_2:51075422-51075441 | Msa0256350:CDS | 50.0% |
| GGACAAGCATCTTAGGGTCA+AGG | + | chr2_2:51075443-51075462 | Msa0256350:CDS | 50.0% | |
| ACCTGTCAGGATGCCTACTA+AGG | + | chr2_2:51075467-51075486 | Msa0256350:CDS | 50.0% | |
| ACCTTAGTAGGCATCCTGAC+AGG | - | chr2_2:51075471-51075490 | None:intergenic | 50.0% | |
| ACTACTAGGAAGACCCCTTG+TGG | + | chr2_2:51075501-51075520 | Msa0256350:CDS | 50.0% | |
| TCTACAAGCACGGCACCATA+TGG | - | chr2_2:51076172-51076191 | None:intergenic | 50.0% | |
| ATTAGTCGCCCACCTTTGGT+GGG | - | chr2_2:51076356-51076375 | None:intergenic | 50.0% | |
| TACCAGGTTCGATTCCCAAG+GGG | - | chr2_2:51076417-51076436 | None:intergenic | 50.0% | |
| GAATCGAACCTGGTATTCCC+CGG | + | chr2_2:51076422-51076441 | Msa0256350:intron | 50.0% | |
| GACTATGGGCCTGTTTGGAT+TGG | - | chr2_2:51076658-51076677 | None:intergenic | 50.0% | |
| GCTTCTTGTCTAGCATGGGT+TGG | + | chr2_2:51076781-51076800 | Msa0256350:intron | 50.0% | |
| ACACCCAATTCAGGTGGCAT+GGG | - | chr2_2:51077028-51077047 | None:intergenic | 50.0% | |
| TTGAACTCCGTGTGCACAAG+AGG | + | chr2_2:51077217-51077236 | Msa0256350:CDS | 50.0% | |
| TGAACTCCGTGTGCACAAGA+GGG | + | chr2_2:51077218-51077237 | Msa0256350:CDS | 50.0% | |
| CAATGACCCTCTTGTGCACA+CGG | - | chr2_2:51077227-51077246 | None:intergenic | 50.0% | |
| CAACGTCTGGGGAACTGTAA+AGG | - | chr2_2:51077251-51077270 | None:intergenic | 50.0% | |
| ACCTCTATCACCATCGAACC+TGG | + | chr2_2:51077282-51077301 | Msa0256350:CDS | 50.0% | |
| ACCAGGTTCGATGGTGATAG+AGG | - | chr2_2:51077286-51077305 | None:intergenic | 50.0% | |
| TTAGGGTCAAGGGACCTGTC+AGG | + | chr2_2:51075454-51075473 | Msa0256350:CDS | 55.0% | |
| AGGAAGACCCCTTGTGGTGA+AGG | + | chr2_2:51075507-51075526 | Msa0256350:CDS | 55.0% | |
| ACTGGATTCCGACCCACCAA+AGG | + | chr2_2:51076341-51076360 | Msa0256350:intron | 55.0% | |
| GATTCCGACCCACCAAAGGT+GGG | + | chr2_2:51076345-51076364 | Msa0256350:intron | 55.0% | |
| ! | GATTAGTCGCCCACCTTTGG+TGG | - | chr2_2:51076357-51076376 | None:intergenic | 55.0% |
| ! | CCAGATTAGTCGCCCACCTT+TGG | - | chr2_2:51076360-51076379 | None:intergenic | 55.0% |
| CCAAAGGTGGGCGACTAATC+TGG | + | chr2_2:51076357-51076376 | Msa0256350:intron | 55.0% | |
| ! | CTAATCTGGCTCGTGCGTAG+AGG | + | chr2_2:51076371-51076390 | Msa0256350:intron | 55.0% |
| TTCCCCTTGGGAATCGAACC+TGG | + | chr2_2:51076412-51076431 | Msa0256350:intron | 55.0% | |
| GTATTCCCCGGATACGTCCT+TGG | + | chr2_2:51076434-51076453 | Msa0256350:intron | 55.0% | |
| TCCTTCCAAGGACGTATCCG+GGG | - | chr2_2:51076442-51076461 | None:intergenic | 55.0% | |
| CTCCTTCCAAGGACGTATCC+GGG | - | chr2_2:51076443-51076462 | None:intergenic | 55.0% | |
| GCTCCTTCCAAGGACGTATC+CGG | - | chr2_2:51076444-51076463 | None:intergenic | 55.0% | |
| CACACCCAATTCAGGTGGCA+TGG | - | chr2_2:51077029-51077048 | None:intergenic | 55.0% | |
| AACCTCGACACCAGGTTCGA+TGG | - | chr2_2:51077295-51077314 | None:intergenic | 55.0% | |
| GGATTCCGACCCACCAAAGG+TGG | + | chr2_2:51076344-51076363 | Msa0256350:intron | 60.0% | |
| CACTGCCAAGCGTTCCCCTT+GGG | + | chr2_2:51076400-51076419 | Msa0256350:intron | 60.0% | |
| CGATTCCCAAGGGGAACGCT+TGG | - | chr2_2:51076408-51076427 | None:intergenic | 60.0% | |
| GGACGTATCCGGGGAATACC+AGG | - | chr2_2:51076433-51076452 | None:intergenic | 60.0% | |
| TCCCCGGATACGTCCTTGGA+AGG | + | chr2_2:51076438-51076457 | Msa0256350:intron | 60.0% | |
| GTGGCAAGGAGCTCCTTCCA+AGG | - | chr2_2:51076454-51076473 | None:intergenic | 60.0% | |
| TGGAAGGAGCTCCTTGCCAC+TGG | + | chr2_2:51076454-51076473 | Msa0256350:intron | 60.0% | |
| TTGCTTGGGCTCCAGTGGCA+AGG | - | chr2_2:51076468-51076487 | None:intergenic | 60.0% | |
| ! | CACCATCGAACCTGGTGTCG+AGG | + | chr2_2:51077290-51077309 | Msa0256350:CDS | 60.0% |
| ! | CGAACCTGGTGTCGAGGTTG+AGG | + | chr2_2:51077296-51077315 | Msa0256350:CDS | 60.0% |
| GTCACCTCAACCTCGACACC+AGG | - | chr2_2:51077303-51077322 | None:intergenic | 60.0% | |
| ! | GTCGCCCACCTTTGGTGGGT+CGG | - | chr2_2:51076352-51076371 | None:intergenic | 65.0% |
| GCACTGCCAAGCGTTCCCCT+TGG | + | chr2_2:51076399-51076418 | Msa0256350:intron | 65.0% | |
| CCAGGTTGCTTGGGCTCCAG+TGG | - | chr2_2:51076473-51076492 | None:intergenic | 65.0% | |
| CCACTGGAGCCCAAGCAACC+TGG | + | chr2_2:51076470-51076489 | Msa0256350:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 51074387 | 51077538 | 51074387 | ID=Msa0256350;Name=Msa0256350 |
| chr2_2 | mRNA | 51074387 | 51077538 | 51074387 | ID=Msa0256350-mRNA-1;Parent=Msa0256350;Name=Msa0256350-mRNA-1;_AED=0.02;_eAED=0.02;_QI=98|1|1|1|0.66|0.75|4|200|123 |
| chr2_2 | exon | 51074387 | 51074470 | 51074387 | ID=Msa0256350-mRNA-1:exon:15364;Parent=Msa0256350-mRNA-1 |
| chr2_2 | exon | 51075182 | 51075310 | 51075182 | ID=Msa0256350-mRNA-1:exon:15365;Parent=Msa0256350-mRNA-1 |
| chr2_2 | exon | 51075415 | 51075528 | 51075415 | ID=Msa0256350-mRNA-1:exon:15366;Parent=Msa0256350-mRNA-1 |
| chr2_2 | exon | 51077196 | 51077538 | 51077196 | ID=Msa0256350-mRNA-1:exon:15367;Parent=Msa0256350-mRNA-1 |
| chr2_2 | five_prime_UTR | 51074387 | 51074470 | 51074387 | ID=Msa0256350-mRNA-1:five_prime_utr;Parent=Msa0256350-mRNA-1 |
| chr2_2 | five_prime_UTR | 51075182 | 51075195 | 51075182 | ID=Msa0256350-mRNA-1:five_prime_utr;Parent=Msa0256350-mRNA-1 |
| chr2_2 | CDS | 51075196 | 51075310 | 51075196 | ID=Msa0256350-mRNA-1:cds;Parent=Msa0256350-mRNA-1 |
| chr2_2 | CDS | 51075415 | 51075528 | 51075415 | ID=Msa0256350-mRNA-1:cds;Parent=Msa0256350-mRNA-1 |
| chr2_2 | CDS | 51077196 | 51077338 | 51077196 | ID=Msa0256350-mRNA-1:cds;Parent=Msa0256350-mRNA-1 |
| chr2_2 | three_prime_UTR | 51077339 | 51077538 | 51077339 | ID=Msa0256350-mRNA-1:three_prime_utr;Parent=Msa0256350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
