Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0793770 | Msa0956840 | 0.863264 | 2.819271e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 32 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCACTTCATTGGCCATTT+CGG | 0.269041 | 5_3:-5631284 | Msa0793770:CDS |
| ACTGACTGGAGTCCAGAATT+TGG | 0.329816 | 5_3:-5629250 | Msa0793770:CDS |
| TTACTTGTTGGTTGTTATCA+AGG | 0.356302 | 5_3:+5631116 | None:intergenic |
| CCTTGGACAACACCAAATTC+TGG | 0.404506 | 5_3:+5629238 | None:intergenic |
| AAAGAGGAGATGACAGGAAA+TGG | 0.407670 | 5_3:-5629277 | Msa0793770:CDS |
| TGTTGATCTATATCCTTCAA+TGG | 0.420130 | 5_3:-5628165 | Msa0793770:CDS |
| TCCAATATTCAGGTTTAAAG+AGG | 0.429627 | 5_3:-5629293 | Msa0793770:intron |
| TTCGTCATAATTGTCCGAAA+TGG | 0.444907 | 5_3:+5631270 | None:intergenic |
| TCAAACCGCCACCACTTCAT+TGG | 0.456004 | 5_3:-5631293 | Msa0793770:CDS |
| ATGCAGGTGGTCTCCATTGA+AGG | 0.483286 | 5_3:+5628152 | None:intergenic |
| TCGCAAACCAACTGCTATGA+AGG | 0.495258 | 5_3:+5631148 | None:intergenic |
| GCTGGTAGGCTTGATACTAT+AGG | 0.498157 | 5_3:-5629214 | Msa0793770:intron |
| TTTGGTGTTGTCCAAGGTGC+TGG | 0.503958 | 5_3:-5629232 | Msa0793770:CDS |
| CAGGAAATGGAACGACTGAC+TGG | 0.513505 | 5_3:-5629264 | Msa0793770:CDS |
| CCAGAATTTGGTGTTGTCCA+AGG | 0.517209 | 5_3:-5629238 | Msa0793770:CDS |
| TTATTTACCTTCATAGCAGT+TGG | 0.518613 | 5_3:-5631155 | Msa0793770:CDS |
| CCGCTTACTACCGCACATGC+AGG | 0.555840 | 5_3:-5631339 | Msa0793770:CDS |
| GTGTTGTCCAAGGTGCTGGT+AGG | 0.562496 | 5_3:-5629228 | Msa0793770:CDS |
| AGGTTTAAAGAGGAGATGAC+AGG | 0.564016 | 5_3:-5629283 | Msa0793770:CDS |
| CTCTAAATTTGTGATGATGC+AGG | 0.575715 | 5_3:+5628136 | None:intergenic |
| CATACAGTGGCCTGCATGTG+CGG | 0.586352 | 5_3:+5631329 | None:intergenic |
| TATCAAGCCTACCAGCACCT+TGG | 0.594122 | 5_3:+5629221 | None:intergenic |
| AATGGCCAATGAAGTGGTGG+CGG | 0.604749 | 5_3:+5631288 | None:intergenic |
| ATCATCACAAATTTAGAGCA+TGG | 0.609384 | 5_3:-5628131 | Msa0793770:CDS |
| GCATGTGCGGTAGTAAGCGG+TGG | 0.619881 | 5_3:+5631342 | None:intergenic |
| TGGCGGTTTGACATTCTGCA+CGG | 0.625615 | 5_3:+5631305 | None:intergenic |
| GTCCGAAATGGCCAATGAAG+TGG | 0.635284 | 5_3:+5631282 | None:intergenic |
| ATTTCGGACAATTATGACGA+AGG | 0.636122 | 5_3:-5631268 | Msa0793770:CDS |
| CCTGCATGTGCGGTAGTAAG+CGG | 0.646885 | 5_3:+5631339 | None:intergenic |
| CGAAATGGCCAATGAAGTGG+TGG | 0.670105 | 5_3:+5631285 | None:intergenic |
| CATTCTGCACGGTCATACAG+TGG | 0.693027 | 5_3:+5631316 | None:intergenic |
| TAAATTTGTGATGATGCAGG+TGG | 0.695487 | 5_3:+5628139 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGTTAAATTTTATTTTGAA+AGG | + | chr5_3:5629157-5629176 | None:intergenic | 10.0% |
| !!! | CAAAATAAAATTTAACTTTT+AGG | - | chr5_3:5629159-5629178 | Msa0793770:intron | 10.0% |
| !!! | ATTTGATTTGTTTAATTATT+TGG | - | chr5_3:5630062-5630081 | Msa0793770:intron | 10.0% |
| !! | TAATTTCAAATAAATAAGTA+TGG | + | chr5_3:5630133-5630152 | None:intergenic | 10.0% |
| !!! | AGGAATCTTTTATTAAAATA+TGG | + | chr5_3:5628764-5628783 | None:intergenic | 15.0% |
| !!! | TGTTAGTTTTCTTTTTAAAT+GGG | - | chr5_3:5629009-5629028 | Msa0793770:intron | 15.0% |
| !! | TTGTTAAATAAAAAGTTCTA+TGG | + | chr5_3:5629126-5629145 | None:intergenic | 15.0% |
| !!! | TTAAAACAACTTTTCTTATT+GGG | + | chr5_3:5629365-5629384 | None:intergenic | 15.0% |
| !!! | ATTAAAACAACTTTTCTTAT+TGG | + | chr5_3:5629366-5629385 | None:intergenic | 15.0% |
| !! | GTAAATATAGTTTAACAAAA+AGG | + | chr5_3:5630932-5630951 | None:intergenic | 15.0% |
| !! | AAAATAAAATTTGAACCTTT+GGG | - | chr5_3:5631059-5631078 | Msa0793770:intron | 15.0% |
| !! | AAGTATAGAAAAAAAATTCA+TGG | - | chr5_3:5631230-5631249 | Msa0793770:intron | 15.0% |
| !!! | TTATTATCTAGTTATTTCCA+AGG | - | chr5_3:5628375-5628394 | Msa0793770:intron | 20.0% |
| !!! | ATTTAAGATGAATATAATCC+AGG | + | chr5_3:5628445-5628464 | None:intergenic | 20.0% |
| !! | TTATAGTTATTGTATTCTGT+TGG | - | chr5_3:5628506-5628525 | Msa0793770:intron | 20.0% |
| !! | TATAGTTATTGTATTCTGTT+GGG | - | chr5_3:5628507-5628526 | Msa0793770:intron | 20.0% |
| !!! | ACTAATAAAGTTTTTACTGA+AGG | - | chr5_3:5628577-5628596 | Msa0793770:intron | 20.0% |
| !!! | CTAATAAAGTTTTTACTGAA+GGG | - | chr5_3:5628578-5628597 | Msa0793770:intron | 20.0% |
| !!! | TAATAAAGTTTTTACTGAAG+GGG | - | chr5_3:5628579-5628598 | Msa0793770:intron | 20.0% |
| !!! | CTGTTAGTTTTCTTTTTAAA+TGG | - | chr5_3:5629008-5629027 | Msa0793770:intron | 20.0% |
| !! | CAACAAAAGAATACAATAAT+TGG | + | chr5_3:5629194-5629213 | None:intergenic | 20.0% |
| !! | TGACATAAAATATTCAATAG+AGG | - | chr5_3:5629667-5629686 | Msa0793770:intron | 20.0% |
| !!! | TTTATACTTTACAGCTATTT+TGG | + | chr5_3:5629709-5629728 | None:intergenic | 20.0% |
| !!! | AATATTTTAGTTTGATAGTG+TGG | - | chr5_3:5629727-5629746 | Msa0793770:intron | 20.0% |
| !! | GATATATTTCTCTAATCAAA+GGG | + | chr5_3:5630321-5630340 | None:intergenic | 20.0% |
| !! | TGATATATTTCTCTAATCAA+AGG | + | chr5_3:5630322-5630341 | None:intergenic | 20.0% |
| !! | CATAAAAATATTCCAAAAGT+AGG | + | chr5_3:5630563-5630582 | None:intergenic | 20.0% |
| !!! | CTACTTTTGGAATATTTTTA+TGG | - | chr5_3:5630561-5630580 | Msa0793770:intron | 20.0% |
| !!! | AAAATGCTTTCAATTTTACA+TGG | - | chr5_3:5630673-5630692 | Msa0793770:intron | 20.0% |
| !! | TTGTAAATAATTAACCAATC+TGG | - | chr5_3:5630726-5630745 | Msa0793770:intron | 20.0% |
| !! | GTTAAACTATATTTACACTT+TGG | - | chr5_3:5630936-5630955 | Msa0793770:intron | 20.0% |
| !!! | GTGAAAGAAATTATTTTGAA+AGG | + | chr5_3:5631018-5631037 | None:intergenic | 20.0% |
| !!! | GGTTCAAATTTTATTTTGAA+AGG | + | chr5_3:5631056-5631075 | None:intergenic | 20.0% |
| !! | CAAAATAAAATTTGAACCTT+TGG | - | chr5_3:5631058-5631077 | Msa0793770:intron | 20.0% |
| ! | GATAATAATCACTTACTTGT+TGG | + | chr5_3:5628363-5628382 | None:intergenic | 25.0% |
| ! | ATAGTTATTGTATTCTGTTG+GGG | - | chr5_3:5628508-5628527 | Msa0793770:intron | 25.0% |
| ! | ATTAGAATTCTCCTATACTA+AGG | + | chr5_3:5628666-5628685 | None:intergenic | 25.0% |
| !! | AAAGATTCCTTTTTCTTTTG+TGG | - | chr5_3:5628774-5628793 | Msa0793770:intron | 25.0% |
| ! | AAACTATCCACAAAAGAAAA+AGG | + | chr5_3:5628784-5628803 | None:intergenic | 25.0% |
| !! | TTTTTAAATGGGTGTTTAGA+TGG | - | chr5_3:5629020-5629039 | Msa0793770:intron | 25.0% |
| ! | TAAGGGTCAATAACATAAAA+TGG | + | chr5_3:5629050-5629069 | None:intergenic | 25.0% |
| ! | AACATAATTCTCAATCATGA+AGG | - | chr5_3:5629438-5629457 | Msa0793770:intron | 25.0% |
| !! | TTGAATATTTTATGTCAGCA+GGG | + | chr5_3:5629664-5629683 | None:intergenic | 25.0% |
| !! | ATTGAATATTTTATGTCAGC+AGG | + | chr5_3:5629665-5629684 | None:intergenic | 25.0% |
| ! | AAGCTATAATCTTATAGATG+CGG | + | chr5_3:5629756-5629775 | None:intergenic | 25.0% |
| !!! | CTATAAGATTATAGCTTTGT+AGG | - | chr5_3:5629759-5629778 | Msa0793770:intron | 25.0% |
| ! | AGTTCTGTTACTATTATATC+AGG | + | chr5_3:5629850-5629869 | None:intergenic | 25.0% |
| ! | TAATAGTAACAGAACTATCT+TGG | - | chr5_3:5629854-5629873 | Msa0793770:intron | 25.0% |
| ! | AATAGTAACAGAACTATCTT+GGG | - | chr5_3:5629855-5629874 | Msa0793770:intron | 25.0% |
| !!! | AACTTTAGAATTAAGAGATG+TGG | + | chr5_3:5629936-5629955 | None:intergenic | 25.0% |
| ! | AATGATACAAAATGTGTCAA+GGG | + | chr5_3:5630022-5630041 | None:intergenic | 25.0% |
| ! | ATAAATAAGTATGGAGAAGT+TGG | + | chr5_3:5630124-5630143 | None:intergenic | 25.0% |
| ! | TATAGGTATTTGATAGAATC+TGG | - | chr5_3:5630267-5630286 | Msa0793770:intron | 25.0% |
| ! | AAGTTGCGTTCTTAATTTAA+TGG | + | chr5_3:5630412-5630431 | None:intergenic | 25.0% |
| ! | TGACTAACTATTTCAATTGT+GGG | - | chr5_3:5630528-5630547 | Msa0793770:intron | 25.0% |
| !!! | ATGGTTTTATGTACCTTTTT+TGG | - | chr5_3:5630692-5630711 | Msa0793770:intron | 25.0% |
| !!! | AGATCAACAAGTTTTGTTAT+TGG | + | chr5_3:5631288-5631307 | None:intergenic | 25.0% |
| ATACTATTCGTCATCTGATT+TGG | - | chr5_3:5628243-5628262 | Msa0793770:intron | 30.0% | |
| TTATTTACCTTCATAGCAGT+TGG | - | chr5_3:5628309-5628328 | Msa0793770:intron | 30.0% | |
| ! | TTACTTGTTGGTTGTTATCA+AGG | + | chr5_3:5628351-5628370 | None:intergenic | 30.0% |
| AAGATGAATATAATCCAGGT+GGG | + | chr5_3:5628441-5628460 | None:intergenic | 30.0% | |
| TAAGATGAATATAATCCAGG+TGG | + | chr5_3:5628442-5628461 | None:intergenic | 30.0% | |
| TAGTTATTGTATTCTGTTGG+GGG | - | chr5_3:5628509-5628528 | Msa0793770:intron | 30.0% | |
| !! | AATAGCTTCATTGACTTGAA+TGG | - | chr5_3:5628620-5628639 | Msa0793770:intron | 30.0% |
| ! | CTTTATGATAGCCTTAGTAT+AGG | - | chr5_3:5628652-5628671 | Msa0793770:intron | 30.0% |
| GCTAAAATTTCAGTGTAGAT+TGG | - | chr5_3:5628690-5628709 | Msa0793770:intron | 30.0% | |
| TAAGGTGACAGGAAAAAAAT+AGG | + | chr5_3:5628826-5628845 | None:intergenic | 30.0% | |
| ! | TTTCCTGTCACCTTAAATTT+TGG | - | chr5_3:5628831-5628850 | Msa0793770:intron | 30.0% |
| TGGTAAACCTCCAAAATTTA+AGG | + | chr5_3:5628844-5628863 | None:intergenic | 30.0% | |
| !! | TAAATTTTGGAGGTTTACCA+AGG | - | chr5_3:5628844-5628863 | Msa0793770:intron | 30.0% |
| CATTATTGTTGCATTAACTC+AGG | + | chr5_3:5628891-5628910 | None:intergenic | 30.0% | |
| ACAGACTCAACATAAGTTAA+GGG | + | chr5_3:5629067-5629086 | None:intergenic | 30.0% | |
| AGAAGTGGTAAAAAATTGCA+TGG | - | chr5_3:5629285-5629304 | Msa0793770:intron | 30.0% | |
| TACATATCTCTATAGAGAAG+AGG | - | chr5_3:5629333-5629352 | Msa0793770:intron | 30.0% | |
| TATAGATTCAAGTATCTTGC+TGG | - | chr5_3:5629529-5629548 | Msa0793770:intron | 30.0% | |
| ! | TGAATATTTTATGTCAGCAG+GGG | + | chr5_3:5629663-5629682 | None:intergenic | 30.0% |
| ! | TTAGTTCTCAAAGCAATTGA+AGG | + | chr5_3:5629886-5629905 | None:intergenic | 30.0% |
| AATATAAGTATTATCCCTGC+TGG | - | chr5_3:5629984-5630003 | Msa0793770:intron | 30.0% | |
| GAATGATACAAAATGTGTCA+AGG | + | chr5_3:5630023-5630042 | None:intergenic | 30.0% | |
| ! | TCCAATATTCAGGTTTAAAG+AGG | - | chr5_3:5630171-5630190 | Msa0793770:intron | 30.0% |
| TCCTCTTTAAACCTGAATAT+TGG | + | chr5_3:5630175-5630194 | None:intergenic | 30.0% | |
| TGGTATACTATTGCTGAAAA+TGG | - | chr5_3:5630287-5630306 | Msa0793770:intron | 30.0% | |
| GGTATACTATTGCTGAAAAT+GGG | - | chr5_3:5630288-5630307 | Msa0793770:intron | 30.0% | |
| !!! | AGTTGCATTTTTCAAGCAAT+AGG | - | chr5_3:5630439-5630458 | Msa0793770:intron | 30.0% |
| CTGACTAACTATTTCAATTG+TGG | - | chr5_3:5630527-5630546 | Msa0793770:intron | 30.0% | |
| GACTAACTATTTCAATTGTG+GGG | - | chr5_3:5630529-5630548 | Msa0793770:intron | 30.0% | |
| AACACACAATAGTCCAAAAA+AGG | + | chr5_3:5630708-5630727 | None:intergenic | 30.0% | |
| ACTTGAATATAACATGTTGC+TGG | - | chr5_3:5630845-5630864 | Msa0793770:intron | 30.0% | |
| TATACAACAATTAGTCCCAA+AGG | + | chr5_3:5631077-5631096 | None:intergenic | 30.0% | |
| !!! | TTTTTTTGTGCCTTTGTTAC+TGG | - | chr5_3:5631101-5631120 | Msa0793770:intron | 30.0% |
| TGTTGATCTATATCCTTCAA+TGG | - | chr5_3:5631299-5631318 | Msa0793770:CDS | 30.0% | |
| ! | ATCATCACAAATTTAGAGCA+TGG | - | chr5_3:5631333-5631352 | Msa0793770:CDS | 30.0% |
| TTCGTCATAATTGTCCGAAA+TGG | + | chr5_3:5628197-5628216 | None:intergenic | 35.0% | |
| ATTTCGGACAATTATGACGA+AGG | - | chr5_3:5628196-5628215 | Msa0793770:intron | 35.0% | |
| ! | GAAGGTGTGATAATGTTATC+AGG | + | chr5_3:5628406-5628425 | None:intergenic | 35.0% |
| GGTTGTTCATCTTGAATCTT+TGG | - | chr5_3:5628530-5628549 | Msa0793770:intron | 35.0% | |
| TGGACTGAGGCAAAAAAAAT+TGG | - | chr5_3:5628710-5628729 | Msa0793770:intron | 35.0% | |
| GGACTGAGGCAAAAAAAATT+GGG | - | chr5_3:5628711-5628730 | Msa0793770:intron | 35.0% | |
| ATTAACTCAGGCAAAAAGGA+CGG | + | chr5_3:5628879-5628898 | None:intergenic | 35.0% | |
| TTGCATTAACTCAGGCAAAA+AGG | + | chr5_3:5628883-5628902 | None:intergenic | 35.0% | |
| TGATTTACAACACCAAGAGT+CGG | + | chr5_3:5628948-5628967 | None:intergenic | 35.0% | |
| CACAGACTCAACATAAGTTA+AGG | + | chr5_3:5629068-5629087 | None:intergenic | 35.0% | |
| TAATGGGGAAAGAAAGTGAA+TGG | - | chr5_3:5629604-5629623 | Msa0793770:intron | 35.0% | |
| !! | TATCACAAAAGCATTGCAAG+TGG | - | chr5_3:5629782-5629801 | Msa0793770:intron | 35.0% |
| AAAAACAAAAGCCTTGCAAG+TGG | - | chr5_3:5629811-5629830 | Msa0793770:intron | 35.0% | |
| AAACTAATACACCACTTGCA+AGG | + | chr5_3:5629825-5629844 | None:intergenic | 35.0% | |
| AATTAAGAGATGTGGAGTGA+AGG | + | chr5_3:5629928-5629947 | None:intergenic | 35.0% | |
| ATACAAAATGTGTCAAGGGA+TGG | + | chr5_3:5630018-5630037 | None:intergenic | 35.0% | |
| GTATCATTCCTTCCAAAAAG+TGG | - | chr5_3:5630034-5630053 | Msa0793770:intron | 35.0% | |
| !!! | ATCAAATAAGCGCCACTTTT+TGG | + | chr5_3:5630049-5630068 | None:intergenic | 35.0% |
| ! | TGATGTTGCTTCCAATATTC+AGG | - | chr5_3:5630161-5630180 | Msa0793770:intron | 35.0% |
| CTTGAAAAATGCAACTAGCA+AGG | + | chr5_3:5630435-5630454 | None:intergenic | 35.0% | |
| !!! | ATAGGCTTTTTTGCTTTCTC+AGG | - | chr5_3:5630457-5630476 | Msa0793770:intron | 35.0% |
| AATATAACATGTTGCTGGTG+TGG | - | chr5_3:5630850-5630869 | Msa0793770:intron | 35.0% | |
| ! | TAAATTTGTGATGATGCAGG+TGG | + | chr5_3:5631328-5631347 | None:intergenic | 35.0% |
| ! | CTCTAAATTTGTGATGATGC+AGG | + | chr5_3:5631331-5631350 | None:intergenic | 35.0% |
| ! | ATCTAGTTATTTCCAAGGCC+AGG | - | chr5_3:5628380-5628399 | Msa0793770:intron | 40.0% |
| ! | TGTGATAATGTTATCAGGCC+TGG | + | chr5_3:5628401-5628420 | None:intergenic | 40.0% |
| GGTGGGATGAAAAGATATGA+AGG | + | chr5_3:5628424-5628443 | None:intergenic | 40.0% | |
| ! | TCATATCTTTTCATCCCACC+TGG | - | chr5_3:5628424-5628443 | Msa0793770:intron | 40.0% |
| TTTCAGTGTAGATTGGACTG+AGG | - | chr5_3:5628697-5628716 | Msa0793770:intron | 40.0% | |
| ! | CCTCCAAAATTTAAGGTGAC+AGG | + | chr5_3:5628837-5628856 | None:intergenic | 40.0% |
| ! | CCTGTCACCTTAAATTTTGG+AGG | - | chr5_3:5628834-5628853 | Msa0793770:intron | 40.0% |
| !!! | TGTACCTTTTTTCCGACTCT+TGG | - | chr5_3:5628933-5628952 | Msa0793770:intron | 40.0% |
| AACACCAAGAGTCGGAAAAA+AGG | + | chr5_3:5628940-5628959 | None:intergenic | 40.0% | |
| GCTTGCATGCTATTCAAGAA+TGG | + | chr5_3:5628975-5628994 | None:intergenic | 40.0% | |
| !! | TCTTTTGTTGTGCTTGTTGC+CGG | - | chr5_3:5629204-5629223 | Msa0793770:intron | 40.0% |
| GACTCATAAAGGAATCACAC+CGG | + | chr5_3:5629226-5629245 | None:intergenic | 40.0% | |
| AGTTTCGACAACCAACTCAT+GGG | + | chr5_3:5629249-5629268 | None:intergenic | 40.0% | |
| AAGTTTCGACAACCAACTCA+TGG | + | chr5_3:5629250-5629269 | None:intergenic | 40.0% | |
| ! | GGTTGTCGAAACTTGATGAT+TGG | - | chr5_3:5629256-5629275 | Msa0793770:CDS | 40.0% |
| GATGATTGGAGACAAAGAAG+TGG | - | chr5_3:5629270-5629289 | Msa0793770:CDS | 40.0% | |
| TACTACATGCTCTATGATGC+AGG | + | chr5_3:5629407-5629426 | None:intergenic | 40.0% | |
| TGGCAAGAGTTCAAGCATAA+TGG | - | chr5_3:5629587-5629606 | Msa0793770:intron | 40.0% | |
| GGCAAGAGTTCAAGCATAAT+GGG | - | chr5_3:5629588-5629607 | Msa0793770:intron | 40.0% | |
| GCAAGAGTTCAAGCATAATG+GGG | - | chr5_3:5629589-5629608 | Msa0793770:intron | 40.0% | |
| AAAGTGAATGGCAAGTGAAG+AGG | - | chr5_3:5629616-5629635 | Msa0793770:intron | 40.0% | |
| GGATGGAAATAAAACCAGCA+GGG | + | chr5_3:5630001-5630020 | None:intergenic | 40.0% | |
| !!! | AATAAGCGCCACTTTTTGGA+AGG | + | chr5_3:5630045-5630064 | None:intergenic | 40.0% |
| TGGAGAAGTTGGAAACAAAG+TGG | + | chr5_3:5630113-5630132 | None:intergenic | 40.0% | |
| AGGTTTAAAGAGGAGATGAC+AGG | - | chr5_3:5630181-5630200 | Msa0793770:intron | 40.0% | |
| AAAGAGGAGATGACAGGAAA+TGG | - | chr5_3:5630187-5630206 | Msa0793770:intron | 40.0% | |
| AATTCTGGTGGTCATAACAC+TGG | + | chr5_3:5630598-5630617 | None:intergenic | 40.0% | |
| ATGACCACCAGAATTGATTG+AGG | - | chr5_3:5630603-5630622 | Msa0793770:intron | 40.0% | |
| GTTCTCACCTCAATCAATTC+TGG | + | chr5_3:5630613-5630632 | None:intergenic | 40.0% | |
| GTGAGAACAATTGATCATGC+TGG | - | chr5_3:5630625-5630644 | Msa0793770:intron | 40.0% | |
| GCTTGCATTCTATTCCAGAT+TGG | + | chr5_3:5630743-5630762 | None:intergenic | 40.0% | |
| GGTTTACACAGCTAACTCAT+GGG | + | chr5_3:5631145-5631164 | None:intergenic | 40.0% | |
| AGGTTTACACAGCTAACTCA+TGG | + | chr5_3:5631146-5631165 | None:intergenic | 40.0% | |
| GAGTTAGCTGTGTAAACCTA+TGG | - | chr5_3:5631147-5631166 | Msa0793770:CDS | 40.0% | |
| AGCTGTGTAAACCTATGGAT+TGG | - | chr5_3:5631152-5631171 | Msa0793770:CDS | 40.0% | |
| CTTCTTAGTCTCCAATCCAT+AGG | + | chr5_3:5631166-5631185 | None:intergenic | 40.0% | |
| !! | ATGGATTGGAGACTAAGAAG+AGG | - | chr5_3:5631166-5631185 | Msa0793770:intron | 40.0% |
| CACCACTTCATTGGCCATTT+CGG | - | chr5_3:5628180-5628199 | Msa0793770:CDS | 45.0% | |
| TCGCAAACCAACTGCTATGA+AGG | + | chr5_3:5628319-5628338 | None:intergenic | 45.0% | |
| AAGGACGGCGTATATTACCT+TGG | + | chr5_3:5628864-5628883 | None:intergenic | 45.0% | |
| CAACTCATGGGGACTCATAA+AGG | + | chr5_3:5629237-5629256 | None:intergenic | 45.0% | |
| CTTTATGAGTCCCCATGAGT+TGG | - | chr5_3:5629235-5629254 | Msa0793770:CDS | 45.0% | |
| GTTTCGACAACCAACTCATG+GGG | + | chr5_3:5629248-5629267 | None:intergenic | 45.0% | |
| TACATGCTCTATGATGCAGG+TGG | + | chr5_3:5629404-5629423 | None:intergenic | 45.0% | |
| GATGACAAGAGTTTGAGCAG+AGG | - | chr5_3:5629557-5629576 | Msa0793770:intron | 45.0% | |
| ACAAGAGTTTGAGCAGAGGA+TGG | - | chr5_3:5629561-5629580 | Msa0793770:intron | 45.0% | |
| GGGATGGAAATAAAACCAGC+AGG | + | chr5_3:5630002-5630021 | None:intergenic | 45.0% | |
| ACTGACTGGAGTCCAGAATT+TGG | - | chr5_3:5630214-5630233 | Msa0793770:intron | 45.0% | |
| CCTTGGACAACACCAAATTC+TGG | + | chr5_3:5630229-5630248 | None:intergenic | 45.0% | |
| !! | CCAGAATTTGGTGTTGTCCA+AGG | - | chr5_3:5630226-5630245 | Msa0793770:intron | 45.0% |
| GCTGGTAGGCTTGATACTAT+AGG | - | chr5_3:5630250-5630269 | Msa0793770:intron | 45.0% | |
| ! | GTCATAACACTGGTTGGGAA+GGG | + | chr5_3:5630588-5630607 | None:intergenic | 45.0% |
| ! | TGGTGGTCATAACACTGGTT+GGG | + | chr5_3:5630593-5630612 | None:intergenic | 45.0% |
| CTCACCTCAATCAATTCTGG+TGG | + | chr5_3:5630610-5630629 | None:intergenic | 45.0% | |
| TTGTGCCTTTGTTACTGGTG+TGG | - | chr5_3:5631106-5631125 | Msa0793770:intron | 45.0% | |
| AGCTACCACACCAGTAACAA+AGG | + | chr5_3:5631114-5631133 | None:intergenic | 45.0% | |
| CATTCTGCACGGTCATACAG+TGG | + | chr5_3:5628151-5628170 | None:intergenic | 50.0% | |
| TGGCGGTTTGACATTCTGCA+CGG | + | chr5_3:5628162-5628181 | None:intergenic | 50.0% | |
| TCAAACCGCCACCACTTCAT+TGG | - | chr5_3:5628171-5628190 | Msa0793770:CDS | 50.0% | |
| AATGGCCAATGAAGTGGTGG+CGG | + | chr5_3:5628179-5628198 | None:intergenic | 50.0% | |
| CGAAATGGCCAATGAAGTGG+TGG | + | chr5_3:5628182-5628201 | None:intergenic | 50.0% | |
| GTCCGAAATGGCCAATGAAG+TGG | + | chr5_3:5628185-5628204 | None:intergenic | 50.0% | |
| AATGTTATCAGGCCTGGCCT+TGG | + | chr5_3:5628395-5628414 | None:intergenic | 50.0% | |
| GCAGGTGGTAGGTACATTAG+AGG | + | chr5_3:5629389-5629408 | None:intergenic | 50.0% | |
| TGCTCTATGATGCAGGTGGT+AGG | + | chr5_3:5629400-5629419 | None:intergenic | 50.0% | |
| GTTTGAGCAGAGGATGGAGA+TGG | - | chr5_3:5629567-5629586 | Msa0793770:intron | 50.0% | |
| CAGGAAATGGAACGACTGAC+TGG | - | chr5_3:5630200-5630219 | Msa0793770:intron | 50.0% | |
| !! | TTTGGTGTTGTCCAAGGTGC+TGG | - | chr5_3:5630232-5630251 | Msa0793770:intron | 50.0% |
| TATCAAGCCTACCAGCACCT+TGG | + | chr5_3:5630246-5630265 | None:intergenic | 50.0% | |
| ! | GGGGATCAGTTGCCTACTTT+TGG | - | chr5_3:5630548-5630567 | Msa0793770:intron | 50.0% |
| ! | GGTCATAACACTGGTTGGGA+AGG | + | chr5_3:5630589-5630608 | None:intergenic | 50.0% |
| CTGGTGGTCATAACACTGGT+TGG | + | chr5_3:5630594-5630613 | None:intergenic | 50.0% | |
| ATGCAGGTGGTCTCCATTGA+AGG | + | chr5_3:5631315-5631334 | None:intergenic | 50.0% | |
| CCTGCATGTGCGGTAGTAAG+CGG | + | chr5_3:5628128-5628147 | None:intergenic | 55.0% | |
| CATACAGTGGCCTGCATGTG+CGG | + | chr5_3:5628138-5628157 | None:intergenic | 55.0% | |
| !! | GTGTTGTCCAAGGTGCTGGT+AGG | - | chr5_3:5630236-5630255 | Msa0793770:intron | 55.0% |
| GTTGCTGGTGTGGTTGCTTC+AGG | - | chr5_3:5630860-5630879 | Msa0793770:intron | 55.0% | |
| GCATGTGCGGTAGTAAGCGG+TGG | + | chr5_3:5628125-5628144 | None:intergenic | 60.0% | |
| CCGCTTACTACCGCACATGC+AGG | - | chr5_3:5628125-5628144 | Msa0793770:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 5628118 | 5631368 | 5628118 | ID=Msa0793770;Name=Msa0793770 |
| chr5_3 | mRNA | 5628118 | 5631368 | 5628118 | ID=Msa0793770-mRNA-1;Parent=Msa0793770;Name=Msa0793770-mRNA-1;_AED=0.45;_eAED=0.62;_QI=0|0.33|0.25|1|1|1|4|0|115 |
| chr5_3 | exon | 5631265 | 5631368 | 5631265 | ID=Msa0793770-mRNA-1:exon:2260;Parent=Msa0793770-mRNA-1 |
| chr5_3 | exon | 5631120 | 5631179 | 5631120 | ID=Msa0793770-mRNA-1:exon:2259;Parent=Msa0793770-mRNA-1 |
| chr5_3 | exon | 5629215 | 5629303 | 5629215 | ID=Msa0793770-mRNA-1:exon:2258;Parent=Msa0793770-mRNA-1 |
| chr5_3 | exon | 5628118 | 5628212 | 5628118 | ID=Msa0793770-mRNA-1:exon:2257;Parent=Msa0793770-mRNA-1 |
| chr5_3 | CDS | 5631265 | 5631368 | 5631265 | ID=Msa0793770-mRNA-1:cds;Parent=Msa0793770-mRNA-1 |
| chr5_3 | CDS | 5631120 | 5631179 | 5631120 | ID=Msa0793770-mRNA-1:cds;Parent=Msa0793770-mRNA-1 |
| chr5_3 | CDS | 5629215 | 5629303 | 5629215 | ID=Msa0793770-mRNA-1:cds;Parent=Msa0793770-mRNA-1 |
| chr5_3 | CDS | 5628118 | 5628212 | 5628118 | ID=Msa0793770-mRNA-1:cds;Parent=Msa0793770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
