AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0956840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 102 sgRNAs with CRISPR-Local

Find 401 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTATACTATTGCTGAAAA+TGG 0.120865 6_3:+65291532 Msa0956840:three_prime_UTR
CTATATAAATTTGTCTTGTT+TGG 0.228010 6_3:-65292809 None:intergenic
GGGGATCAGTTGCCTACTTT+TGG 0.238505 6_3:+65291794 Msa0956840:three_prime_UTR
CAAAATAAAATTTGAACCTT+TGG 0.248639 6_3:+65292304 Msa0956840:three_prime_UTR
GTTCTCACCTCAATCAATTC+TGG 0.281590 6_3:-65291856 None:intergenic
AGACCTTCATACTCTCTCTT+TGG 0.290337 6_3:-65292728 None:intergenic
GTAGCTCTGTGGGTATTATA+TGG 0.296466 6_3:+65292851 Msa0956840:three_prime_UTR
AAGTTGCGTTCTTAATTTAA+TGG 0.300752 6_3:-65291654 None:intergenic
GTAAATATAGTTTAACAAAA+AGG 0.323622 6_3:-65292175 None:intergenic
AAAATAAAATTTGAACCTTT+GGG 0.323910 6_3:+65292305 Msa0956840:three_prime_UTR
ACTGACTGGAGTCCAGAATT+TGG 0.329816 6_3:+65291459 Msa0956840:CDS
GTTGCTGGTGTGGTTGCTTC+AGG 0.337106 6_3:+65292106 Msa0956840:three_prime_UTR
ACAAGACAAATTTATATAGT+AGG 0.344653 6_3:+65292813 Msa0956840:three_prime_UTR
ACGCAATGTTGTAACTGTTT+CGG 0.360406 6_3:+65286846 Msa0956840:CDS
CTGACTTTATGCTGGTGTTT+CGG 0.367772 6_3:+65287007 Msa0956840:CDS
TTGTAAATAATTAACCAATC+TGG 0.400380 6_3:+65291972 Msa0956840:three_prime_UTR
ACGTGAAGGAGGGAGGAATC+AGG 0.402145 6_3:+65286918 Msa0956840:CDS
CCTTGGACAACACCAAATTC+TGG 0.404506 6_3:-65291471 None:intergenic
GACCTTCATACTCTCTCTTT+GGG 0.406427 6_3:-65292727 None:intergenic
AAAGAGGAGATGACAGGAAA+TGG 0.407670 6_3:+65291432 Msa0956840:CDS
TATAGGTATTTGATAGAATC+TGG 0.414127 6_3:+65291512 Msa0956840:exon
TGACTAACTATTTCAATTGT+GGG 0.414458 6_3:+65291774 Msa0956840:three_prime_UTR
TGTTGATCTATATCCTTCAA+TGG 0.420130 6_3:+65292544 Msa0956840:three_prime_UTR
TAGCTCTGTGGGTATTATAT+GGG 0.424996 6_3:+65292852 Msa0956840:three_prime_UTR
GAGGAATCAGGAGGGAGTTG+AGG 0.425282 6_3:+65286930 Msa0956840:CDS
TCCAATATTCAGGTTTAAAG+AGG 0.429627 6_3:+65291416 Msa0956840:intron
CTGACTAACTATTTCAATTG+TGG 0.437599 6_3:+65291773 Msa0956840:three_prime_UTR
TGTAACTGTTTCGGATACTA+AGG 0.442183 6_3:+65286855 Msa0956840:CDS
CTTCTTAGTCTCCAATCCAT+AGG 0.447315 6_3:-65292408 None:intergenic
GAGTTAGCTGTGTAAACCTA+TGG 0.455155 6_3:+65292392 Msa0956840:three_prime_UTR
GCTTGCATTCTATTCCAGAT+TGG 0.458266 6_3:-65291986 None:intergenic
GTTAAACTATATTTACACTT+TGG 0.464872 6_3:+65292182 Msa0956840:three_prime_UTR
AGAGAGAGTATGAAGGTCTC+AGG 0.465346 6_3:+65292732 Msa0956840:three_prime_UTR
GGTATACTATTGCTGAAAAT+GGG 0.467704 6_3:+65291533 Msa0956840:three_prime_UTR
ACTTGAATATAACATGTTGC+TGG 0.480467 6_3:+65292091 Msa0956840:three_prime_UTR
ATGCAGGTGGTCTCCATTGA+AGG 0.483286 6_3:-65292557 None:intergenic
AAACTTCCCTGACTTTATGC+TGG 0.488231 6_3:+65286999 Msa0956840:CDS
TGATATATTTCTCTAATCAA+AGG 0.491128 6_3:-65291564 None:intergenic
GAAGATAAATCTTAGAATGA+AGG 0.493244 6_3:+65292612 Msa0956840:three_prime_UTR
GCTGGTAGGCTTGATACTAT+AGG 0.498157 6_3:+65291495 Msa0956840:CDS
TCATACTCTCTCTTTGGGAT+AGG 0.501611 6_3:-65292722 None:intergenic
TTTGGTGTTGTCCAAGGTGC+TGG 0.503958 6_3:+65291477 Msa0956840:CDS
TGGTGGTCATAACACTGGTT+GGG 0.504271 6_3:-65291836 None:intergenic
GATATATTTCTCTAATCAAA+GGG 0.504700 6_3:-65291563 None:intergenic
CGAAACACCAGCATAAAGTC+AGG 0.504956 6_3:-65287006 None:intergenic
TTCGGATACTAAGGTTTACA+AGG 0.512663 6_3:+65286864 Msa0956840:CDS
CAGGAAATGGAACGACTGAC+TGG 0.513505 6_3:+65291445 Msa0956840:CDS
AAGACTTTGACAGACATTCA+CGG 0.516740 6_3:+65286809 None:intergenic
CCAGAATTTGGTGTTGTCCA+AGG 0.517209 6_3:+65291471 Msa0956840:CDS
ATGGTACAAAACATCAGGTT+GGG 0.518586 6_3:+65286890 Msa0956840:CDS
GGATCATGGTACAAAACATC+AGG 0.520555 6_3:+65286885 Msa0956840:CDS
CTGGTGGTCATAACACTGGT+TGG 0.529257 6_3:-65291837 None:intergenic
AAATTAACATCCACTTGCAA+TGG 0.529993 6_3:-65292913 None:intergenic
TACCCACAGAGCTACTATAT+AGG 0.531594 6_3:-65292843 None:intergenic
GGTCATAACACTGGTTGGGA+AGG 0.535458 6_3:-65291832 None:intergenic
AGCTGTGTAAACCTATGGAT+TGG 0.540510 6_3:+65292397 Msa0956840:three_prime_UTR
AGGTTTACACAGCTAACTCA+TGG 0.543757 6_3:-65292388 None:intergenic
AACCTATATAGTAGCTCTGT+GGG 0.549879 6_3:+65292841 Msa0956840:three_prime_UTR
AAGAGAGTATGAAGGGGTCA+AGG 0.550193 6_3:+65292689 Msa0956840:three_prime_UTR
GGGAAGGATTATTTAGCAAG+TGG 0.552960 6_3:+65292873 Msa0956840:three_prime_UTR
AAATGACAAACCATTGCAAG+TGG 0.560241 6_3:+65292903 Msa0956840:three_prime_UTR
CAACATTGCGTGAATGAGAA+TGG 0.561134 6_3:-65286834 None:intergenic
GTGTTGTCCAAGGTGCTGGT+AGG 0.562496 6_3:+65291481 Msa0956840:CDS
GATGGAATGCACTTCAACAA+AGG 0.563751 6_3:+65292764 Msa0956840:three_prime_UTR
AGGTTTAAAGAGGAGATGAC+AGG 0.564016 6_3:+65291426 Msa0956840:intron
ATGAAGGTCTCAGGAGCACA+AGG 0.566962 6_3:+65292741 Msa0956840:three_prime_UTR
ACTAAGGTTTACAAGGATCA+TGG 0.567756 6_3:+65286871 Msa0956840:CDS
GGTCTCAGGAGCACAAGGGA+TGG 0.571035 6_3:+65292746 Msa0956840:three_prime_UTR
CTCTAAATTTGTGATGATGC+AGG 0.575715 6_3:-65292573 None:intergenic
GTCATAACACTGGTTGGGAA+GGG 0.578373 6_3:-65291831 None:intergenic
CATTGCAAAGAGAGTATGAA+GGG 0.578581 6_3:+65292682 Msa0956840:three_prime_UTR
AATATAACATGTTGCTGGTG+TGG 0.579934 6_3:+65292096 Msa0956840:three_prime_UTR
TGAAGGAGGGAGGAATCAGG+AGG 0.588025 6_3:+65286921 Msa0956840:CDS
CATGGTACAAAACATCAGGT+TGG 0.591114 6_3:+65286889 Msa0956840:CDS
GACTAACTATTTCAATTGTG+GGG 0.591939 6_3:+65291775 Msa0956840:three_prime_UTR
TATCAAGCCTACCAGCACCT+TGG 0.594122 6_3:-65291488 None:intergenic
TTGTGCCTTTGTTACTGGTG+TGG 0.594817 6_3:+65292351 Msa0956840:three_prime_UTR
AGAGAGTATGAAGGGGTCAA+GGG 0.595668 6_3:+65292690 Msa0956840:three_prime_UTR
CTGTGGGTATTATATGGGGA+AGG 0.596877 6_3:+65292857 Msa0956840:three_prime_UTR
TATACAACAATTAGTCCCAA+AGG 0.599896 6_3:-65292320 None:intergenic
AATTCTGGTGGTCATAACAC+TGG 0.605525 6_3:-65291841 None:intergenic
GAAGGAGGGAGGAATCAGGA+GGG 0.606329 6_3:+65286922 Msa0956840:CDS
ATCATCACAAATTTAGAGCA+TGG 0.609384 6_3:+65292578 Msa0956840:three_prime_UTR
GTGAGAACAATTGATCATGC+TGG 0.614014 6_3:+65291871 Msa0956840:three_prime_UTR
AGCTCTGTGGGTATTATATG+GGG 0.617985 6_3:+65292853 Msa0956840:three_prime_UTR
GGTTTACACAGCTAACTCAT+GGG 0.620011 6_3:-65292387 None:intergenic
TTGGGTACAGACGTGAAGGA+GGG 0.624716 6_3:+65286908 Msa0956840:CDS
GTTGGGTACAGACGTGAAGG+AGG 0.626179 6_3:+65286907 Msa0956840:CDS
GCATTGCAAAGAGAGTATGA+AGG 0.626904 6_3:+65292681 Msa0956840:three_prime_UTR
TAACCTATATAGTAGCTCTG+TGG 0.628135 6_3:+65292840 Msa0956840:three_prime_UTR
CTCACCTCAATCAATTCTGG+TGG 0.632335 6_3:-65291853 None:intergenic
ATGACCACCAGAATTGATTG+AGG 0.634712 6_3:+65291849 Msa0956840:three_prime_UTR
CAGGTTGGGTACAGACGTGA+AGG 0.635310 6_3:+65286904 Msa0956840:CDS
AGCTACCACACCAGTAACAA+AGG 0.643307 6_3:-65292356 None:intergenic
ATCCCAAAGAGAGAGTATGA+AGG 0.648046 6_3:+65292725 Msa0956840:three_prime_UTR
GGTACAGACGTGAAGGAGGG+AGG 0.659259 6_3:+65286911 Msa0956840:CDS
GATGTAACAGCAGAAGACAA+AGG 0.666042 6_3:+65286952 Msa0956840:CDS
ATGGATTGGAGACTAAGAAG+AGG 0.667484 6_3:+65292411 Msa0956840:three_prime_UTR
GAAACACCAGCATAAAGTCA+GGG 0.671264 6_3:-65287005 None:intergenic
TAAATTTGTGATGATGCAGG+TGG 0.695487 6_3:-65292570 None:intergenic
TGAAGGTCTCAGGAGCACAA+GGG 0.714938 6_3:+65292742 Msa0956840:three_prime_UTR
ATTGCAAAGAGAGTATGAAG+GGG 0.739332 6_3:+65292683 Msa0956840:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAATTAATTAAAGATAAA+AGG - chr6_3:65287874-65287893 None:intergenic 10.0%
!! ATAAAAAAATATAAGCATAA+AGG - chr6_3:65288047-65288066 None:intergenic 10.0%
!!! TATAATTTTTTTCATTGTAT+TGG - chr6_3:65288227-65288246 None:intergenic 10.0%
!! ATTATAAAAATTAAGTGAAA+AGG + chr6_3:65288241-65288260 Msa0956840:intron 10.0%
!! TTATAAAAATTAAGTGAAAA+GGG + chr6_3:65288242-65288261 Msa0956840:intron 10.0%
!!! CTTTTTTAAATATGATTTTT+TGG - chr6_3:65288750-65288769 None:intergenic 10.0%
!! CAAAAAATCATATTTAAAAA+AGG + chr6_3:65288748-65288767 Msa0956840:intron 10.0%
!!! AAAAAAATAAACTTTGATTT+TGG - chr6_3:65289035-65289054 None:intergenic 10.0%
!!! TCAAATTTTGTATATTAAAA+AGG - chr6_3:65289113-65289132 None:intergenic 10.0%
!!! ATTTGATTTGTTTAATTATT+TGG + chr6_3:65291307-65291326 Msa0956840:intron 10.0%
!! TAATTTCAAATAAATAAGTA+TGG - chr6_3:65291378-65291397 None:intergenic 10.0%
!!! AAAAAAATTCTCAATTTTGA+TGG + chr6_3:65288440-65288459 Msa0956840:intron 15.0%
!!! AAAAAATTCTCAATTTTGAT+GGG + chr6_3:65288441-65288460 Msa0956840:intron 15.0%
!! AAAAGAAAAAATGTTATGTA+TGG - chr6_3:65288473-65288492 None:intergenic 15.0%
!!! TACTTTTTCTTTGTAAATTA+TGG + chr6_3:65289245-65289264 Msa0956840:intron 15.0%
!!! TTTGCATACTTTTTTTTTTT+TGG + chr6_3:65289371-65289390 Msa0956840:intron 15.0%
!!! TTTTTTTGTCAAGAAAAAAA+TGG - chr6_3:65289549-65289568 None:intergenic 15.0%
!!! TGTTTTATATACATTAGAAA+CGG - chr6_3:65289849-65289868 None:intergenic 15.0%
!!! AGGAATCTTTTATTAAAATA+TGG - chr6_3:65290463-65290482 None:intergenic 15.0%
!!! TTAAAACAACTTTTCTTATT+GGG - chr6_3:65290638-65290657 None:intergenic 15.0%
!!! ATTAAAACAACTTTTCTTAT+TGG - chr6_3:65290639-65290658 None:intergenic 15.0%
!! GTAAATATAGTTTAACAAAA+AGG - chr6_3:65292178-65292197 None:intergenic 15.0%
!! AAAATAAAATTTGAACCTTT+GGG + chr6_3:65292305-65292324 Msa0956840:three_prime_UTR 15.0%
!! AAGTATAGAAAAAAAATTCA+TGG + chr6_3:65292475-65292494 Msa0956840:three_prime_UTR 15.0%
!!! TTAATTAAAGTTGATGTATG+TGG - chr6_3:65288024-65288043 None:intergenic 20.0%
!!! CATAACATTTTTTCTTTTGA+AGG + chr6_3:65288475-65288494 Msa0956840:intron 20.0%
!! ATTCGTAAATACATTTGTAA+TGG - chr6_3:65288852-65288871 None:intergenic 20.0%
!! TTCATATTAACATTAAGAGT+TGG + chr6_3:65288887-65288906 Msa0956840:intron 20.0%
!! AATGTAATAGGAATTTGAAA+TGG + chr6_3:65289344-65289363 Msa0956840:intron 20.0%
!!! AAATTGTTATGTACTTTTAC+CGG + chr6_3:65289571-65289590 Msa0956840:intron 20.0%
!! AACAAAAGTTAAAAAGGAAT+AGG - chr6_3:65289625-65289644 None:intergenic 20.0%
!! GTACATAACAAAAGTTAAAA+AGG - chr6_3:65289631-65289650 None:intergenic 20.0%
!! ATATAAGTTAATTCCGAATT+CGG - chr6_3:65289914-65289933 None:intergenic 20.0%
!!! GTATATTTTAGTTATTTCCA+AGG + chr6_3:65290074-65290093 Msa0956840:intron 20.0%
!!! ATTTAAGATGAATATAATCC+AGG - chr6_3:65290144-65290163 None:intergenic 20.0%
!! TTATAGTTATTGTATTCTGT+TGG + chr6_3:65290205-65290224 Msa0956840:intron 20.0%
!! TATAGTTATTGTATTCTGTT+GGG + chr6_3:65290206-65290225 Msa0956840:intron 20.0%
!!! ACTAATAAAGTTTTTACTGA+AGG + chr6_3:65290276-65290295 Msa0956840:intron 20.0%
!!! CTAATAAAGTTTTTACTGAA+GGG + chr6_3:65290277-65290296 Msa0956840:intron 20.0%
!!! TAATAAAGTTTTTACTGAAG+GGG + chr6_3:65290278-65290297 Msa0956840:intron 20.0%
!!! TTGAATATTTTATGTCAGAA+GGG - chr6_3:65290909-65290928 None:intergenic 20.0%
!!! ATTGAATATTTTATGTCAGA+AGG - chr6_3:65290910-65290929 None:intergenic 20.0%
!! TGACATAAAATATTCAATAG+AGG + chr6_3:65290912-65290931 Msa0956840:intron 20.0%
!!! TTTATACTTTACAGCTATTT+TGG - chr6_3:65290954-65290973 None:intergenic 20.0%
!!! AATATTTTAGTTTGATAGTG+TGG + chr6_3:65290972-65290991 Msa0956840:intron 20.0%
!! GATATATTTCTCTAATCAAA+GGG - chr6_3:65291566-65291585 None:intergenic 20.0%
!! TGATATATTTCTCTAATCAA+AGG - chr6_3:65291567-65291586 None:intergenic 20.0%
!!! AAAATGCTTTCAATTTTACA+TGG + chr6_3:65291919-65291938 Msa0956840:three_prime_UTR 20.0%
!! TTGTAAATAATTAACCAATC+TGG + chr6_3:65291972-65291991 Msa0956840:three_prime_UTR 20.0%
!! GTTAAACTATATTTACACTT+TGG + chr6_3:65292182-65292201 Msa0956840:three_prime_UTR 20.0%
!!! GTGAAAGAAATTATTTTGAA+AGG - chr6_3:65292264-65292283 None:intergenic 20.0%
!!! GGTTCAAATTTTATTTTGAA+AGG - chr6_3:65292302-65292321 None:intergenic 20.0%
!! CAAAATAAAATTTGAACCTT+TGG + chr6_3:65292304-65292323 Msa0956840:three_prime_UTR 20.0%
!!! CTATATAAATTTGTCTTGTT+TGG - chr6_3:65292812-65292831 None:intergenic 20.0%
!! ACAAGACAAATTTATATAGT+AGG + chr6_3:65292813-65292832 Msa0956840:three_prime_UTR 20.0%
! TGAAGGAGTAAAGAATATAA+GGG + chr6_3:65287275-65287294 Msa0956840:intron 25.0%
! ATCTTCTTAAAATATGTTCG+TGG + chr6_3:65287907-65287926 Msa0956840:intron 25.0%
! AAATAAAACATTGTGCTTGT+AGG - chr6_3:65287937-65287956 None:intergenic 25.0%
! TTTCATCTTATATTAGAGAC+TGG - chr6_3:65287963-65287982 None:intergenic 25.0%
!! CATGCATTGATATTGTAATT+TGG - chr6_3:65288189-65288208 None:intergenic 25.0%
! GAATATTAATACAAACCTTG+AGG + chr6_3:65288299-65288318 Msa0956840:intron 25.0%
! TAATATTAGATTTCTCCTCA+AGG - chr6_3:65288317-65288336 None:intergenic 25.0%
! AAGATCCATTTAAAGACAAA+GGG - chr6_3:65288525-65288544 None:intergenic 25.0%
! TCATCAAAGTTGTCAAAAAA+TGG - chr6_3:65289154-65289173 None:intergenic 25.0%
! CCATTTAATTGACAACTTAT+GGG - chr6_3:65289275-65289294 None:intergenic 25.0%
! ACCATTTAATTGACAACTTA+TGG - chr6_3:65289276-65289295 None:intergenic 25.0%
!! TGAGTAAAAAGGCTAAATTT+TGG - chr6_3:65289317-65289336 None:intergenic 25.0%
!!! AATTTAGCCTTTTTACTCAA+TGG + chr6_3:65289318-65289337 Msa0956840:intron 25.0%
!! CATTTTTCCATTGAGTAAAA+AGG - chr6_3:65289328-65289347 None:intergenic 25.0%
! ACTCAATGGAAAAATGTAAT+AGG + chr6_3:65289332-65289351 Msa0956840:intron 25.0%
! TTATATACATTAGAAACGGA+CGG - chr6_3:65289845-65289864 None:intergenic 25.0%
! CATAATAATCACTTACTTGT+TGG - chr6_3:65290047-65290066 None:intergenic 25.0%
! ATAGTTATTGTATTCTGTTG+GGG + chr6_3:65290207-65290226 Msa0956840:intron 25.0%
!!! AATAGCTTCATTGACTTTAA+TGG + chr6_3:65290319-65290338 Msa0956840:intron 25.0%
! ATTAGAATTCTCCTATACTA+AGG - chr6_3:65290365-65290384 None:intergenic 25.0%
!! AAAGATTCCTTTTTCTTTTG+TGG + chr6_3:65290473-65290492 Msa0956840:intron 25.0%
! AAACTATCCACAAAAGAAAA+AGG - chr6_3:65290483-65290502 None:intergenic 25.0%
! AAAAACTTCAAAGTCCTATT+TGG + chr6_3:65290508-65290527 Msa0956840:intron 25.0%
! AACATAATTCTCAATCATGA+AGG + chr6_3:65290711-65290730 Msa0956840:intron 25.0%
!! TGAATATTTTATGTCAGAAG+GGG - chr6_3:65290908-65290927 None:intergenic 25.0%
! AAGCTATAATCTTATAGATG+CGG - chr6_3:65291001-65291020 None:intergenic 25.0%
!!! CTATAAGATTATAGCTTTGT+AGG + chr6_3:65291004-65291023 Msa0956840:intron 25.0%
! AGTTCTGTTACTATTATATC+AGG - chr6_3:65291095-65291114 None:intergenic 25.0%
! TAATAGTAACAGAACTATCT+TGG + chr6_3:65291099-65291118 Msa0956840:intron 25.0%
! AATAGTAACAGAACTATCTT+GGG + chr6_3:65291100-65291119 Msa0956840:intron 25.0%
!!! AACTTTAGAATTAAGAGATG+TGG - chr6_3:65291181-65291200 None:intergenic 25.0%
! AATGATACAAAATGTGTCAA+GGG - chr6_3:65291267-65291286 None:intergenic 25.0%
! TAATGATACAAAATGTGTCA+AGG - chr6_3:65291268-65291287 None:intergenic 25.0%
! ATAAATAAGTATGGAGAAGT+TGG - chr6_3:65291369-65291388 None:intergenic 25.0%
! TATAGGTATTTGATAGAATC+TGG + chr6_3:65291512-65291531 Msa0956840:exon 25.0%
! AAGTTGCGTTCTTAATTTAA+TGG - chr6_3:65291657-65291676 None:intergenic 25.0%
! TGACTAACTATTTCAATTGT+GGG + chr6_3:65291774-65291793 Msa0956840:three_prime_UTR 25.0%
!!! ATGGTTTTATGTACCTTTTT+TGG + chr6_3:65291938-65291957 Msa0956840:three_prime_UTR 25.0%
!!! AGATCAACAAGTTTTGTTAT+TGG - chr6_3:65292533-65292552 None:intergenic 25.0%
! GAAGATAAATCTTAGAATGA+AGG + chr6_3:65292612-65292631 Msa0956840:three_prime_UTR 25.0%
AGCGTAAAAAACCATAAACT+TGG - chr6_3:65287104-65287123 None:intergenic 30.0%
!! TTTTACGCTTTTTGAACGTA+CGG + chr6_3:65287115-65287134 Msa0956840:intron 30.0%
CTCTTGCGTTGAATAATATT+TGG + chr6_3:65287154-65287173 Msa0956840:intron 30.0%
GCGTTGAATAATATTTGGAT+CGG + chr6_3:65287159-65287178 Msa0956840:intron 30.0%
GTGAAGGAGTAAAGAATATA+AGG + chr6_3:65287274-65287293 Msa0956840:intron 30.0%
!! GTGTTTTTGCATTGTAATGA+TGG + chr6_3:65287726-65287745 Msa0956840:intron 30.0%
GTAATGATGGTACAAATATC+TGG + chr6_3:65287739-65287758 Msa0956840:intron 30.0%
TCACCATAAAAGAGAAATGA+CGG + chr6_3:65287807-65287826 Msa0956840:intron 30.0%
TTCTTAAAATATGTTCGTGG+AGG + chr6_3:65287910-65287929 Msa0956840:intron 30.0%
AACATGTAAACAAACTAGTC+TGG + chr6_3:65288122-65288141 Msa0956840:intron 30.0%
TGTAATTTGGAAATCAACGA+CGG - chr6_3:65288176-65288195 None:intergenic 30.0%
CAAGATCCATTTAAAGACAA+AGG - chr6_3:65288526-65288545 None:intergenic 30.0%
AAATGGATCTTGCAAGTTAA+AGG + chr6_3:65288534-65288553 Msa0956840:intron 30.0%
AAAAGGAACTACCTTGAAAA+TGG + chr6_3:65288765-65288784 Msa0956840:intron 30.0%
CGTAAATACATTTGTAATGG+TGG - chr6_3:65288849-65288868 None:intergenic 30.0%
! ATTTTCTCTCTCTATTGCTT+TGG + chr6_3:65289206-65289225 Msa0956840:intron 30.0%
CCCATAAGTTGTCAATTAAA+TGG + chr6_3:65289272-65289291 Msa0956840:intron 30.0%
! GTAAAAAGGCTAAATTTTGG+AGG - chr6_3:65289314-65289333 None:intergenic 30.0%
TTATAGTCTGGAAGAAAAAC+TGG - chr6_3:65289879-65289898 None:intergenic 30.0%
AAAGGAAAGAGATTATAGTC+TGG - chr6_3:65289891-65289910 None:intergenic 30.0%
CTTATATTGTACACCTGATT+TGG + chr6_3:65289927-65289946 Msa0956840:intron 30.0%
ACAAACAAACAAACCAAATC+AGG - chr6_3:65289943-65289962 None:intergenic 30.0%
TTATTTACCTTCATAGCAGT+TGG + chr6_3:65289993-65290012 Msa0956840:intron 30.0%
! TTACTTGTTGGTTGTTATCA+AGG - chr6_3:65290035-65290054 None:intergenic 30.0%
AAGATGAATATAATCCAGGT+GGG - chr6_3:65290140-65290159 None:intergenic 30.0%
TAAGATGAATATAATCCAGG+TGG - chr6_3:65290141-65290160 None:intergenic 30.0%
TAGTTATTGTATTCTGTTGG+GGG + chr6_3:65290208-65290227 Msa0956840:intron 30.0%
! CTTTATGATAGCCTTAGTAT+AGG + chr6_3:65290351-65290370 Msa0956840:intron 30.0%
GCTAAAATTTCAGTGTAGAT+TGG + chr6_3:65290389-65290408 Msa0956840:intron 30.0%
AGAAGTGGTAAAAAATTGCA+TGG + chr6_3:65290558-65290577 Msa0956840:intron 30.0%
TACATATCTCTATAGAGAAG+AGG + chr6_3:65290606-65290625 Msa0956840:intron 30.0%
TATAGATTCAAGTATCTTGC+TGG + chr6_3:65290802-65290821 Msa0956840:intron 30.0%
! TTAGTTCTCAAAGCAATTGA+AGG - chr6_3:65291131-65291150 None:intergenic 30.0%
GTATCATTACTTCCAAAAAG+TGG + chr6_3:65291279-65291298 Msa0956840:intron 30.0%
! TTATGTTGCTTCCAATATTC+AGG + chr6_3:65291406-65291425 Msa0956840:intron 30.0%
! TCCAATATTCAGGTTTAAAG+AGG + chr6_3:65291416-65291435 Msa0956840:intron 30.0%
TCCTCTTTAAACCTGAATAT+TGG - chr6_3:65291420-65291439 None:intergenic 30.0%
TGGTATACTATTGCTGAAAA+TGG + chr6_3:65291532-65291551 Msa0956840:three_prime_UTR 30.0%
GGTATACTATTGCTGAAAAT+GGG + chr6_3:65291533-65291552 Msa0956840:three_prime_UTR 30.0%
!!! AGTTGCATTTTTCAAGCAAT+AGG + chr6_3:65291684-65291703 Msa0956840:three_prime_UTR 30.0%
CTGACTAACTATTTCAATTG+TGG + chr6_3:65291773-65291792 Msa0956840:three_prime_UTR 30.0%
GACTAACTATTTCAATTGTG+GGG + chr6_3:65291775-65291794 Msa0956840:three_prime_UTR 30.0%
AACACACAATAGTCCAAAAA+AGG - chr6_3:65291954-65291973 None:intergenic 30.0%
ACTTGAATATAACATGTTGC+TGG + chr6_3:65292091-65292110 Msa0956840:three_prime_UTR 30.0%
TATACAACAATTAGTCCCAA+AGG - chr6_3:65292323-65292342 None:intergenic 30.0%
!!! TTTTTTTGTGCCTTTGTTAC+TGG + chr6_3:65292346-65292365 Msa0956840:three_prime_UTR 30.0%
TGTTGATCTATATCCTTCAA+TGG + chr6_3:65292544-65292563 Msa0956840:three_prime_UTR 30.0%
! ATCATCACAAATTTAGAGCA+TGG + chr6_3:65292578-65292597 Msa0956840:three_prime_UTR 30.0%
AAATTAACATCCACTTGCAA+TGG - chr6_3:65292916-65292935 None:intergenic 30.0%
ACGCAATGTTGTAACTGTTT+CGG + chr6_3:65286846-65286865 Msa0956840:CDS 35.0%
TGTAACTGTTTCGGATACTA+AGG + chr6_3:65286855-65286874 Msa0956840:CDS 35.0%
TTCGGATACTAAGGTTTACA+AGG + chr6_3:65286864-65286883 Msa0956840:CDS 35.0%
ACTAAGGTTTACAAGGATCA+TGG + chr6_3:65286871-65286890 Msa0956840:CDS 35.0%
ATGGTACAAAACATCAGGTT+GGG + chr6_3:65286890-65286909 Msa0956840:CDS 35.0%
!!! TCGGTTACGACAATTTTTTG+AGG + chr6_3:65287026-65287045 Msa0956840:intron 35.0%
AGGAGTAAAGAATATAAGGG+TGG + chr6_3:65287278-65287297 Msa0956840:intron 35.0%
GGAGTAAAGAATATAAGGGT+GGG + chr6_3:65287279-65287298 Msa0956840:intron 35.0%
GGAGAAAAATTAACGATGGA+GGG + chr6_3:65287330-65287349 Msa0956840:intron 35.0%
AAAAATTAACGATGGAGGGT+AGG + chr6_3:65287334-65287353 Msa0956840:intron 35.0%
AAAATTAACGATGGAGGGTA+GGG + chr6_3:65287335-65287354 Msa0956840:intron 35.0%
TGCAAATCAAAACAACGTTG+AGG + chr6_3:65287488-65287507 Msa0956840:intron 35.0%
GCAAATCAAAACAACGTTGA+GGG + chr6_3:65287489-65287508 Msa0956840:intron 35.0%
! TGTAACACAGAAGTATAACG+CGG - chr6_3:65287576-65287595 None:intergenic 35.0%
TGTGTTACAAGACCGTAATT+GGG + chr6_3:65287587-65287606 Msa0956840:intron 35.0%
ATTATCACTACAACAACGAG+TGG + chr6_3:65287653-65287672 Msa0956840:intron 35.0%
CACCATAAAAGAGAAATGAC+GGG + chr6_3:65287808-65287827 Msa0956840:intron 35.0%
! TACCCGTCATTTCTCTTTTA+TGG - chr6_3:65287813-65287832 None:intergenic 35.0%
!! TAAGTGAAAAGGGTGTCAAA+TGG + chr6_3:65288252-65288271 Msa0956840:intron 35.0%
GAATTAGTCGATCCTTTAGT+TGG + chr6_3:65288573-65288592 Msa0956840:intron 35.0%
TCGATCCTTTAGTTGGATAT+CGG + chr6_3:65288580-65288599 Msa0956840:intron 35.0%
AAAACCCGATATCCAACTAA+AGG - chr6_3:65288588-65288607 None:intergenic 35.0%
TTGTAATGGTGGTCATAGTT+TGG - chr6_3:65288838-65288857 None:intergenic 35.0%
ATGTATTTCACTCATGCGTA+GGG - chr6_3:65288922-65288941 None:intergenic 35.0%
TATGTATTTCACTCATGCGT+AGG - chr6_3:65288923-65288942 None:intergenic 35.0%
!! TCTCTCTATTGCTTTGGTTT+TGG + chr6_3:65289212-65289231 Msa0956840:intron 35.0%
CTCTCTCTTCTCTCATTTAT+CGG + chr6_3:65289596-65289615 Msa0956840:intron 35.0%
TTCGTCATAATTGTCGGAAA+TGG - chr6_3:65289765-65289784 None:intergenic 35.0%
ATTTCCGACAATTATGACGA+AGG + chr6_3:65289764-65289783 Msa0956840:intron 35.0%
ATCTCTTTCCTTTCCGAATT+CGG + chr6_3:65289898-65289917 Msa0956840:intron 35.0%
AGTTAATTCCGAATTCGGAA+AGG - chr6_3:65289909-65289928 None:intergenic 35.0%
!! TTTTAGTTATTTCCAAGGCC+AGG + chr6_3:65290079-65290098 Msa0956840:intron 35.0%
! GAAGGTGTGATAATGTTATC+AGG - chr6_3:65290105-65290124 None:intergenic 35.0%
GGTTGTTCATCTTGAATCTT+TGG + chr6_3:65290229-65290248 Msa0956840:intron 35.0%
TGGACTGAGGCAAAAAAAAT+TGG + chr6_3:65290409-65290428 Msa0956840:intron 35.0%
GGACTGAGGCAAAAAAAATT+GGG + chr6_3:65290410-65290429 Msa0956840:intron 35.0%
TCAAGTTTCGACAACCAAAT+AGG - chr6_3:65290525-65290544 None:intergenic 35.0%
TGACAAGAGTTCAAGCATAA+TGG + chr6_3:65290832-65290851 Msa0956840:intron 35.0%
GACAAGAGTTCAAGCATAAT+GGG + chr6_3:65290833-65290852 Msa0956840:intron 35.0%
ACAAGAGTTCAAGCATAATG+GGG + chr6_3:65290834-65290853 Msa0956840:intron 35.0%
TAATGGGGAAAGAAAGTGAA+TGG + chr6_3:65290849-65290868 Msa0956840:intron 35.0%
!! TATCACAAAAGCATTGCAAG+TGG + chr6_3:65291027-65291046 Msa0956840:intron 35.0%
AAAAACAAAAGCCTTGCAAG+TGG + chr6_3:65291056-65291075 Msa0956840:intron 35.0%
AAACTAATACACCACTTGCA+AGG - chr6_3:65291070-65291089 None:intergenic 35.0%
AATTAAGAGATGTGGAGTGA+AGG - chr6_3:65291173-65291192 None:intergenic 35.0%
AATATAAGTACTATCCCTGC+TGG + chr6_3:65291229-65291248 Msa0956840:intron 35.0%
ATACAAAATGTGTCAAGGGA+TGG - chr6_3:65291263-65291282 None:intergenic 35.0%
!!! ATCAAATAAGCGCCACTTTT+TGG - chr6_3:65291294-65291313 None:intergenic 35.0%
CTTGAAAAATGCAACTAGCA+AGG - chr6_3:65291680-65291699 None:intergenic 35.0%
!!! ATAGGCTTTTTTGCTTTCTC+AGG + chr6_3:65291702-65291721 Msa0956840:three_prime_UTR 35.0%
AATATAACATGTTGCTGGTG+TGG + chr6_3:65292096-65292115 Msa0956840:three_prime_UTR 35.0%
! TAAATTTGTGATGATGCAGG+TGG - chr6_3:65292573-65292592 None:intergenic 35.0%
! CTCTAAATTTGTGATGATGC+AGG - chr6_3:65292576-65292595 None:intergenic 35.0%
! CATTGCAAAGAGAGTATGAA+GGG + chr6_3:65292682-65292701 Msa0956840:three_prime_UTR 35.0%
! ATTGCAAAGAGAGTATGAAG+GGG + chr6_3:65292683-65292702 Msa0956840:three_prime_UTR 35.0%
! TAACCTATATAGTAGCTCTG+TGG + chr6_3:65292840-65292859 Msa0956840:three_prime_UTR 35.0%
! AACCTATATAGTAGCTCTGT+GGG + chr6_3:65292841-65292860 Msa0956840:three_prime_UTR 35.0%
! TAGCTCTGTGGGTATTATAT+GGG + chr6_3:65292852-65292871 Msa0956840:three_prime_UTR 35.0%
AAATGACAAACCATTGCAAG+TGG + chr6_3:65292903-65292922 Msa0956840:three_prime_UTR 35.0%
CAACATTGCGTGAATGAGAA+TGG - chr6_3:65286837-65286856 None:intergenic 40.0%
GGATCATGGTACAAAACATC+AGG + chr6_3:65286885-65286904 Msa0956840:CDS 40.0%
CATGGTACAAAACATCAGGT+TGG + chr6_3:65286889-65286908 Msa0956840:CDS 40.0%
GATGTAACAGCAGAAGACAA+AGG + chr6_3:65286952-65286971 Msa0956840:CDS 40.0%
AAACTTCCCTGACTTTATGC+TGG + chr6_3:65286999-65287018 Msa0956840:CDS 40.0%
GAAACACCAGCATAAAGTCA+GGG - chr6_3:65287008-65287027 None:intergenic 40.0%
CTGACTTTATGCTGGTGTTT+CGG + chr6_3:65287007-65287026 Msa0956840:CDS 40.0%
!!! CGACAATTTTTTGAGGTGTG+CGG + chr6_3:65287033-65287052 Msa0956840:intron 40.0%
TGGCTGATGTTTACATTGCA+CGG + chr6_3:65287061-65287080 Msa0956840:intron 40.0%
AACTATCGAGGCCAAGTTTA+TGG + chr6_3:65287090-65287109 Msa0956840:intron 40.0%
CGTACGGAACAAAGATAAGT+TGG + chr6_3:65287131-65287150 Msa0956840:intron 40.0%
CGAGGGAGAAAAATTAACGA+TGG + chr6_3:65287326-65287345 Msa0956840:intron 40.0%
GGGAGAAAAATTAACGATGG+AGG + chr6_3:65287329-65287348 Msa0956840:intron 40.0%
AAACATGATGAAAGGGAGGA+TGG + chr6_3:65287374-65287393 Msa0956840:intron 40.0%
CTGTGTTACAAGACCGTAAT+TGG + chr6_3:65287586-65287605 Msa0956840:intron 40.0%
! TTCCGTTGTTGTTACTCCTA+TGG + chr6_3:65287692-65287711 Msa0956840:intron 40.0%
! TCCGTTGTTGTTACTCCTAT+GGG + chr6_3:65287693-65287712 Msa0956840:intron 40.0%
! AACGAAGCACTTCACTTCTT+TGG + chr6_3:65287771-65287790 Msa0956840:intron 40.0%
AGGAAAGTCGATACATAGCA+TGG + chr6_3:65288495-65288514 Msa0956840:intron 40.0%
GCTCTCCCTTTGTCTTTAAA+TGG + chr6_3:65288517-65288536 Msa0956840:intron 40.0%
CGATCCTTTAGTTGGATATC+GGG + chr6_3:65288581-65288600 Msa0956840:intron 40.0%
!! AAAAAGGGAGGCCATTTTCA+AGG - chr6_3:65288779-65288798 None:intergenic 40.0%
AATGAGAGAAGAGAGAGAAC+CGG - chr6_3:65289593-65289612 None:intergenic 40.0%
CGATCCTTCGTCATAATTGT+CGG - chr6_3:65289771-65289790 None:intergenic 40.0%
TATACATTAGAAACGGACGG+CGG - chr6_3:65289842-65289861 None:intergenic 40.0%
! TGTGATAATGTTATCAGGCC+TGG - chr6_3:65290100-65290119 None:intergenic 40.0%
GGTGGGATGAAAAGATATGA+AGG - chr6_3:65290123-65290142 None:intergenic 40.0%
! TCATATCTTTTCATCCCACC+TGG + chr6_3:65290123-65290142 Msa0956840:intron 40.0%
TTTCAGTGTAGATTGGACTG+AGG + chr6_3:65290396-65290415 Msa0956840:intron 40.0%
! GGTTGTCGAAACTTGATGAT+TGG + chr6_3:65290529-65290548 Msa0956840:intron 40.0%
GATGATTGGAGACAAAGAAG+TGG + chr6_3:65290543-65290562 Msa0956840:intron 40.0%
TACTACATGCTCTATGATGC+AGG - chr6_3:65290680-65290699 None:intergenic 40.0%
AAAGTGAATGGCAAGTGAAG+AGG + chr6_3:65290861-65290880 Msa0956840:intron 40.0%
GGATGGAAATAAAACCAGCA+GGG - chr6_3:65291246-65291265 None:intergenic 40.0%
TGGAGAAGTTGGAAACAAAG+TGG - chr6_3:65291358-65291377 None:intergenic 40.0%
AGGTTTAAAGAGGAGATGAC+AGG + chr6_3:65291426-65291445 Msa0956840:intron 40.0%
AAAGAGGAGATGACAGGAAA+TGG + chr6_3:65291432-65291451 Msa0956840:CDS 40.0%
AATTCTGGTGGTCATAACAC+TGG - chr6_3:65291844-65291863 None:intergenic 40.0%
ATGACCACCAGAATTGATTG+AGG + chr6_3:65291849-65291868 Msa0956840:three_prime_UTR 40.0%
GTTCTCACCTCAATCAATTC+TGG - chr6_3:65291859-65291878 None:intergenic 40.0%
GTGAGAACAATTGATCATGC+TGG + chr6_3:65291871-65291890 Msa0956840:three_prime_UTR 40.0%
GCTTGCATTCTATTCCAGAT+TGG - chr6_3:65291989-65292008 None:intergenic 40.0%
GGTTTACACAGCTAACTCAT+GGG - chr6_3:65292390-65292409 None:intergenic 40.0%
AGGTTTACACAGCTAACTCA+TGG - chr6_3:65292391-65292410 None:intergenic 40.0%
GAGTTAGCTGTGTAAACCTA+TGG + chr6_3:65292392-65292411 Msa0956840:three_prime_UTR 40.0%
AGCTGTGTAAACCTATGGAT+TGG + chr6_3:65292397-65292416 Msa0956840:three_prime_UTR 40.0%
CTTCTTAGTCTCCAATCCAT+AGG - chr6_3:65292411-65292430 None:intergenic 40.0%
!! ATGGATTGGAGACTAAGAAG+AGG + chr6_3:65292411-65292430 Msa0956840:three_prime_UTR 40.0%
! GCATTGCAAAGAGAGTATGA+AGG + chr6_3:65292681-65292700 Msa0956840:three_prime_UTR 40.0%
!! TCATACTCTCTCTTTGGGAT+AGG - chr6_3:65292725-65292744 None:intergenic 40.0%
! ATCCCAAAGAGAGAGTATGA+AGG + chr6_3:65292725-65292744 Msa0956840:three_prime_UTR 40.0%
GACCTTCATACTCTCTCTTT+GGG - chr6_3:65292730-65292749 None:intergenic 40.0%
AGACCTTCATACTCTCTCTT+TGG - chr6_3:65292731-65292750 None:intergenic 40.0%
GATGGAATGCACTTCAACAA+AGG + chr6_3:65292764-65292783 Msa0956840:three_prime_UTR 40.0%
TACCCACAGAGCTACTATAT+AGG - chr6_3:65292846-65292865 None:intergenic 40.0%
! GTAGCTCTGTGGGTATTATA+TGG + chr6_3:65292851-65292870 Msa0956840:three_prime_UTR 40.0%
AGCTCTGTGGGTATTATATG+GGG + chr6_3:65292853-65292872 Msa0956840:three_prime_UTR 40.0%
GGGAAGGATTATTTAGCAAG+TGG + chr6_3:65292873-65292892 Msa0956840:three_prime_UTR 40.0%
CGAAACACCAGCATAAAGTC+AGG - chr6_3:65287009-65287028 None:intergenic 45.0%
GCACGGAAAACAAACTATCG+AGG + chr6_3:65287078-65287097 Msa0956840:intron 45.0%
GGATCGGACAATGTCGAATT+TGG + chr6_3:65287175-65287194 Msa0956840:intron 45.0%
! TCGTCACTGACTGTTTGCAT+CGG - chr6_3:65287309-65287328 None:intergenic 45.0%
ATGCAAACAGTCAGTGACGA+GGG + chr6_3:65287309-65287328 Msa0956840:intron 45.0%
ACGGTGGGAAACATGATGAA+AGG + chr6_3:65287366-65287385 Msa0956840:intron 45.0%
CGGTGGGAAACATGATGAAA+GGG + chr6_3:65287367-65287386 Msa0956840:intron 45.0%
TGGGAAACATGATGAAAGGG+AGG + chr6_3:65287370-65287389 Msa0956840:intron 45.0%
ACGGAGGCAGAAGTTGTTAT+TGG + chr6_3:65287465-65287484 Msa0956840:intron 45.0%
GAATCGCGACAACAGTAAGA+AGG + chr6_3:65287527-65287546 Msa0956840:intron 45.0%
GACAACAGTAAGAAGGACCA+GGG + chr6_3:65287534-65287553 Msa0956840:intron 45.0%
! GAATAACTCTTGTTGTGCCC+TGG - chr6_3:65287554-65287573 None:intergenic 45.0%
TACCGGATGTTGCCCAATTA+CGG - chr6_3:65287602-65287621 None:intergenic 45.0%
TAATTGGGCAACATCCGGTA+TGG + chr6_3:65287602-65287621 Msa0956840:intron 45.0%
ATCACTACAACAACGAGTGG+AGG + chr6_3:65287656-65287675 Msa0956840:intron 45.0%
GCCCATAGGAGTAACAACAA+CGG - chr6_3:65287697-65287716 None:intergenic 45.0%
TTACTCCTATGGGCAGTGAT+TGG + chr6_3:65287703-65287722 Msa0956840:intron 45.0%
TACTCCTATGGGCAGTGATT+GGG + chr6_3:65287704-65287723 Msa0956840:intron 45.0%
GAAAACGAGCAGAAAAAGGG+AGG - chr6_3:65288791-65288810 None:intergenic 45.0%
CCGGAAAACGAGCAGAAAAA+GGG - chr6_3:65288794-65288813 None:intergenic 45.0%
! CCCTTTTTCTGCTCGTTTTC+CGG + chr6_3:65288791-65288810 Msa0956840:intron 45.0%
GTCATAGTTTGGCGAACACA+TGG - chr6_3:65288827-65288846 None:intergenic 45.0%
!! CTGGGTACTAGAAGCATTCA+AGG - chr6_3:65289656-65289675 None:intergenic 45.0%
TTGACATTCTGCACGGTCAT+TGG - chr6_3:65289723-65289742 None:intergenic 45.0%
ATACATTAGAAACGGACGGC+GGG - chr6_3:65289841-65289860 None:intergenic 45.0%
TCGCAAACCAACTGCTATGA+AGG - chr6_3:65290003-65290022 None:intergenic 45.0%
TACATGCTCTATGATGCAGG+TGG - chr6_3:65290677-65290696 None:intergenic 45.0%
GGGATGGAAATAAAACCAGC+AGG - chr6_3:65291247-65291266 None:intergenic 45.0%
ACTGACTGGAGTCCAGAATT+TGG + chr6_3:65291459-65291478 Msa0956840:CDS 45.0%
CCTTGGACAACACCAAATTC+TGG - chr6_3:65291474-65291493 None:intergenic 45.0%
!! CCAGAATTTGGTGTTGTCCA+AGG + chr6_3:65291471-65291490 Msa0956840:CDS 45.0%
GCTGGTAGGCTTGATACTAT+AGG + chr6_3:65291495-65291514 Msa0956840:CDS 45.0%
! GTCATAACACTGGTTGGGAA+GGG - chr6_3:65291834-65291853 None:intergenic 45.0%
! TGGTGGTCATAACACTGGTT+GGG - chr6_3:65291839-65291858 None:intergenic 45.0%
CTCACCTCAATCAATTCTGG+TGG - chr6_3:65291856-65291875 None:intergenic 45.0%
TTGTGCCTTTGTTACTGGTG+TGG + chr6_3:65292351-65292370 Msa0956840:three_prime_UTR 45.0%
AGCTACCACACCAGTAACAA+AGG - chr6_3:65292359-65292378 None:intergenic 45.0%
! AAGAGAGTATGAAGGGGTCA+AGG + chr6_3:65292689-65292708 Msa0956840:three_prime_UTR 45.0%
! AGAGAGTATGAAGGGGTCAA+GGG + chr6_3:65292690-65292709 Msa0956840:three_prime_UTR 45.0%
! AGAGAGAGTATGAAGGTCTC+AGG + chr6_3:65292732-65292751 Msa0956840:three_prime_UTR 45.0%
CTGTGGGTATTATATGGGGA+AGG + chr6_3:65292857-65292876 Msa0956840:three_prime_UTR 45.0%
!!! ATATATTTAAAACATATTAA+TGG + chr6_3:65288713-65288732 Msa0956840:intron 5.0%
!!! TATATTTAAAACATATTAAT+GGG + chr6_3:65288714-65288733 Msa0956840:intron 5.0%
TTGGGTACAGACGTGAAGGA+GGG + chr6_3:65286908-65286927 Msa0956840:CDS 50.0%
!!! TTTTGAGGTGTGCGGCATAC+TGG + chr6_3:65287041-65287060 Msa0956840:intron 50.0%
AAGGTTGTGGTGAGGGTAAG+AGG + chr6_3:65287252-65287271 Msa0956840:intron 50.0%
GATGCAAACAGTCAGTGACG+AGG + chr6_3:65287308-65287327 Msa0956840:intron 50.0%
ATTAACGATGGAGGGTAGGG+TGG + chr6_3:65287338-65287357 Msa0956840:intron 50.0%
CATGATGAAAGGGAGGATGG+AGG + chr6_3:65287377-65287396 Msa0956840:intron 50.0%
GGAGGAGGTTATGGTGAATG+AGG + chr6_3:65287398-65287417 Msa0956840:intron 50.0%
GGAGGTTATGGTGAATGAGG+AGG + chr6_3:65287401-65287420 Msa0956840:intron 50.0%
GTGAATGAGGAGGATTCACG+AGG + chr6_3:65287411-65287430 Msa0956840:intron 50.0%
TCGCGATTCACCTTCTTCTC+TGG - chr6_3:65287516-65287535 None:intergenic 50.0%
CGACAACAGTAAGAAGGACC+AGG + chr6_3:65287533-65287552 Msa0956840:intron 50.0%
GACCGTAATTGGGCAACATC+CGG + chr6_3:65287597-65287616 Msa0956840:intron 50.0%
ATCCGGTATGGTAGCTACAG+CGG + chr6_3:65287614-65287633 Msa0956840:intron 50.0%
TATGGTAGCTACAGCGGTGA+CGG + chr6_3:65287620-65287639 Msa0956840:intron 50.0%
AACACCCAATCACTGCCCAT+AGG - chr6_3:65287711-65287730 None:intergenic 50.0%
GCCGGAAAACGAGCAGAAAA+AGG - chr6_3:65288795-65288814 None:intergenic 50.0%
TTCACTCATGCGTAGGGTTG+TGG - chr6_3:65288916-65288935 None:intergenic 50.0%
GTAGTAAGCGGTGGTCATCT+GGG - chr6_3:65289674-65289693 None:intergenic 50.0%
ACATTCTGCACGGTCATTGG+TGG - chr6_3:65289720-65289739 None:intergenic 50.0%
TGGCGGTTTGACATTCTGCA+CGG - chr6_3:65289730-65289749 None:intergenic 50.0%
TCAAACCGCCACCACTTCAT+TGG + chr6_3:65289739-65289758 Msa0956840:intron 50.0%
AATGGCCAATGAAGTGGTGG+CGG - chr6_3:65289747-65289766 None:intergenic 50.0%
GGAAATGGCCAATGAAGTGG+TGG - chr6_3:65289750-65289769 None:intergenic 50.0%
GTCGGAAATGGCCAATGAAG+TGG - chr6_3:65289753-65289772 None:intergenic 50.0%
AATGTTATCAGGCCTGGCCT+TGG - chr6_3:65290094-65290113 None:intergenic 50.0%
GCAGGTGGTAGGTACATTAG+AGG - chr6_3:65290662-65290681 None:intergenic 50.0%
TGCTCTATGATGCAGGTGGT+AGG - chr6_3:65290673-65290692 None:intergenic 50.0%
CAGGAAATGGAACGACTGAC+TGG + chr6_3:65291445-65291464 Msa0956840:CDS 50.0%
!! TTTGGTGTTGTCCAAGGTGC+TGG + chr6_3:65291477-65291496 Msa0956840:CDS 50.0%
TATCAAGCCTACCAGCACCT+TGG - chr6_3:65291491-65291510 None:intergenic 50.0%
! GGGGATCAGTTGCCTACTTT+TGG + chr6_3:65291794-65291813 Msa0956840:three_prime_UTR 50.0%
! GGTCATAACACTGGTTGGGA+AGG - chr6_3:65291835-65291854 None:intergenic 50.0%
CTGGTGGTCATAACACTGGT+TGG - chr6_3:65291840-65291859 None:intergenic 50.0%
ATGCAGGTGGTCTCCATTGA+AGG - chr6_3:65292560-65292579 None:intergenic 50.0%
! ATGAAGGTCTCAGGAGCACA+AGG + chr6_3:65292741-65292760 Msa0956840:three_prime_UTR 50.0%
! TGAAGGTCTCAGGAGCACAA+GGG + chr6_3:65292742-65292761 Msa0956840:three_prime_UTR 50.0%
! CAGGTTGGGTACAGACGTGA+AGG + chr6_3:65286904-65286923 Msa0956840:CDS 55.0%
GTTGGGTACAGACGTGAAGG+AGG + chr6_3:65286907-65286926 Msa0956840:CDS 55.0%
ACGTGAAGGAGGGAGGAATC+AGG + chr6_3:65286918-65286937 Msa0956840:CDS 55.0%
TGAAGGAGGGAGGAATCAGG+AGG + chr6_3:65286921-65286940 Msa0956840:CDS 55.0%
GAAGGAGGGAGGAATCAGGA+GGG + chr6_3:65286922-65286941 Msa0956840:CDS 55.0%
GAGGAATCAGGAGGGAGTTG+AGG + chr6_3:65286930-65286949 Msa0956840:CDS 55.0%
ATGTCGAATTTGGCCGCGTG+AGG + chr6_3:65287185-65287204 Msa0956840:intron 55.0%
AGGAAGGGAAGGTTGTGGTG+AGG + chr6_3:65287244-65287263 Msa0956840:intron 55.0%
GGAAGGGAAGGTTGTGGTGA+GGG + chr6_3:65287245-65287264 Msa0956840:intron 55.0%
GTGGTGAGGGTAAGAGGTGA+AGG + chr6_3:65287258-65287277 Msa0956840:intron 55.0%
GATGAAAGGGAGGATGGAGG+AGG + chr6_3:65287380-65287399 Msa0956840:intron 55.0%
GAGGATGGAGGAGGAGGTTA+TGG + chr6_3:65287389-65287408 Msa0956840:intron 55.0%
TCCGTTTCCTCCCTGACTGT+CGG - chr6_3:65287450-65287469 None:intergenic 55.0%
CGTTGAGGGACCAGAGAAGA+AGG + chr6_3:65287503-65287522 Msa0956840:intron 55.0%
CACCGCTGTAGCTACCATAC+CGG - chr6_3:65287619-65287638 None:intergenic 55.0%
ATGGTAGCTACAGCGGTGAC+GGG + chr6_3:65287621-65287640 Msa0956840:intron 55.0%
CAACAACGAGTGGAGGATGC+TGG + chr6_3:65287663-65287682 Msa0956840:intron 55.0%
AACACATGGCGAGAGTTGGC+CGG - chr6_3:65288813-65288832 None:intergenic 55.0%
GGTAGTAAGCGGTGGTCATC+TGG - chr6_3:65289675-65289694 None:intergenic 55.0%
CCTGCATGTGCGGTAGTAAG+CGG - chr6_3:65289686-65289705 None:intergenic 55.0%
CATACAGTGGCCTGCATGTG+CGG - chr6_3:65289696-65289715 None:intergenic 55.0%
! GGTCATTGGTGGCCATACAG+TGG - chr6_3:65289709-65289728 None:intergenic 55.0%
!! GTGTTGTCCAAGGTGCTGGT+AGG + chr6_3:65291481-65291500 Msa0956840:CDS 55.0%
GTTGCTGGTGTGGTTGCTTC+AGG + chr6_3:65292106-65292125 Msa0956840:three_prime_UTR 55.0%
GGTACAGACGTGAAGGAGGG+AGG + chr6_3:65286911-65286930 Msa0956840:CDS 60.0%
AGGCGCGCTTTGACAGGTTG+TGG + chr6_3:65287205-65287224 Msa0956840:intron 60.0%
CGCGCTTTGACAGGTTGTGG+CGG + chr6_3:65287208-65287227 Msa0956840:intron 60.0%
GCTTTGACAGGTTGTGGCGG+AGG + chr6_3:65287211-65287230 Msa0956840:intron 60.0%
! CAGGTTGTGGCGGAGGATTG+TGG + chr6_3:65287218-65287237 Msa0956840:intron 60.0%
! GTTGTGGCGGAGGATTGTGG+CGG + chr6_3:65287221-65287240 Msa0956840:intron 60.0%
! GGAGGATTGTGGCGGAGGAA+GGG + chr6_3:65287229-65287248 Msa0956840:intron 60.0%
! GATTGTGGCGGAGGAAGGGA+AGG + chr6_3:65287233-65287252 Msa0956840:intron 60.0%
GAAAGGGAGGATGGAGGAGG+AGG + chr6_3:65287383-65287402 Msa0956840:intron 60.0%
GAGGAGGATTCACGAGGTGC+AGG + chr6_3:65287417-65287436 Msa0956840:intron 60.0%
GGATTCACGAGGTGCAGGTG+CGG + chr6_3:65287422-65287441 Msa0956840:intron 60.0%
GCCGACAGTCAGGGAGGAAA+CGG + chr6_3:65287446-65287465 Msa0956840:intron 60.0%
GACAGTCAGGGAGGAAACGG+AGG + chr6_3:65287449-65287468 Msa0956840:intron 60.0%
TGGTAGCTACAGCGGTGACG+GGG + chr6_3:65287622-65287641 Msa0956840:intron 60.0%
GGCGAACACATGGCGAGAGT+TGG - chr6_3:65288817-65288836 None:intergenic 60.0%
GCATGTGCGGTAGTAAGCGG+TGG - chr6_3:65289683-65289702 None:intergenic 60.0%
CCGCTTACTACCGCACATGC+AGG + chr6_3:65289683-65289702 Msa0956840:intron 60.0%
CGCACATGCAGGCCACTGTA+TGG + chr6_3:65289694-65289713 Msa0956840:intron 60.0%
!! ACGGACGGCGGGTTTTGTAG+AGG - chr6_3:65289830-65289849 None:intergenic 60.0%
! GGTCTCAGGAGCACAAGGGA+TGG + chr6_3:65292746-65292765 Msa0956840:three_prime_UTR 60.0%
CTGTCAAAGCGCGCCTCACG+CGG - chr6_3:65287201-65287220 None:intergenic 65.0%
! CGGAGGATTGTGGCGGAGGA+AGG + chr6_3:65287228-65287247 Msa0956840:intron 65.0%
GGCGGAGGAAGGGAAGGTTG+TGG + chr6_3:65287239-65287258 Msa0956840:intron 65.0%
GGAGGGTAGGGTGGAGTCGA+CGG + chr6_3:65287347-65287366 Msa0956840:intron 65.0%
GGTAGGGTGGAGTCGACGGT+GGG + chr6_3:65287351-65287370 Msa0956840:intron 65.0%
!! AGGTGCGGTGCCGACAGTCA+GGG + chr6_3:65287437-65287456 Msa0956840:intron 65.0%
! GGTAGCTACAGCGGTGACGG+GGG + chr6_3:65287623-65287642 Msa0956840:intron 65.0%
CGCGTGAGGCGCGCTTTGAC+AGG + chr6_3:65287199-65287218 Msa0956840:intron 70.0%
! GTGGCGGAGGATTGTGGCGG+AGG + chr6_3:65287224-65287243 Msa0956840:intron 70.0%
GGGTAGGGTGGAGTCGACGG+TGG + chr6_3:65287350-65287369 Msa0956840:intron 70.0%
!! CAGGTGCGGTGCCGACAGTC+AGG + chr6_3:65287436-65287455 Msa0956840:intron 70.0%
!! TGCGGTGCCGACAGTCAGGG+AGG + chr6_3:65287440-65287459 Msa0956840:intron 70.0%
GGTACCCGTGCGCGTACGCA+CGG + chr6_3:65288143-65288162 Msa0956840:intron 70.0%
GTACCCGTGCGCGTACGCAC+GGG + chr6_3:65288144-65288163 Msa0956840:intron 70.0%
TCCACCCGTGCGTACGCGCA+CGG - chr6_3:65288151-65288170 None:intergenic 70.0%
CCACCCGTGCGTACGCGCAC+GGG - chr6_3:65288150-65288169 None:intergenic 75.0%
! CCCGTGCGCGTACGCACGGG+TGG + chr6_3:65288147-65288166 Msa0956840:intron 80.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 65286823 65292965 65286823 ID=Msa0956840;Name=Msa0956840
chr6_3 mRNA 65286823 65292965 65286823 ID=Msa0956840-mRNA-1;Parent=Msa0956840;Name=Msa0956840-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0|0.5|0.5|0|0.5|2|1441|100
chr6_3 exon 65286823 65287028 65286823 ID=Msa0956840-mRNA-1:exon:12362;Parent=Msa0956840-mRNA-1
chr6_3 exon 65291428 65292965 65291428 ID=Msa0956840-mRNA-1:exon:12363;Parent=Msa0956840-mRNA-1
chr6_3 CDS 65286823 65287028 65286823 ID=Msa0956840-mRNA-1:cds;Parent=Msa0956840-mRNA-1
chr6_3 CDS 65291428 65291524 65291428 ID=Msa0956840-mRNA-1:cds;Parent=Msa0956840-mRNA-1
chr6_3 three_prime_UTR 65291525 65292965 65291525 ID=Msa0956840-mRNA-1:three_prime_utr;Parent=Msa0956840-mRNA-1
Gene Sequence

>Msa0956840

CATTCACGGCACCATTCTCATTCACGCAATGTTGTAACTGTTTCGGATACTAAGGTTTACAAGGATCATGGTACAAAACATCAGGTTGGGTACAGACGTGAAGGAGGGAGGAATCAGGAGGGAGTTGAGGATGTAACAGCAGAAGACAAAGGCAATAAAGTTTCTTCTTATTTTACAAACTTCCCTGACTTTATGCTGGTGTTTCGGTTTAAAGAGGAGATGACAGGAAATGGAACGACTGACTGGAGTCCAGAATTTGGTGTTGTCCAAGGTGCTGGTAGGCTTGATACTATAGGTATTTGA
Protein sequence

>Msa0956840

HSRHHSHSRNVVTVSDTKVYKDHGTKHQVGYRREGGRNQEGVEDVTAEDKGNKVSSYFTNFPDFMLVFRFKEEMTGNGTTDWSPEFGVVQGAGRLDTIGI*