AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0794230

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0794230 MtrunA17_Chr5g0395361 96.760 895 26 1 1 895 1 892 0.0 1768
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0794230 AT5G08550.1 51.277 940 381 24 1 895 1 908 0.0 821
Msa0794230 AT5G09210.1 51.084 323 148 4 541 858 252 569 2.32e-101 328

Find 300 sgRNAs with CRISPR-Local

Find 595 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGGTTTGGGGCGGTGGTGG+TGG 0.168409 5_3:+6094219 None:intergenic
TATAAATTGTTATTCACTTA+TGG 0.191596 5_3:-6089465 Msa0794230:CDS
CCTTGAGCTTGTCCCAAATT+TGG 0.191837 5_3:-6089394 Msa0794230:CDS
AATCCCAGCAACACCGATTT+TGG 0.195761 5_3:-6093400 Msa0794230:CDS
AACAGATGGACCAACAAAAT+TGG 0.204015 5_3:+6093491 None:intergenic
TTGAATATATTGTTTATAAA+AGG 0.208388 5_3:-6087215 Msa0794230:three_prime_UTR
CGGATTATTGATTCCCTATA+TGG 0.218970 5_3:-6088766 Msa0794230:CDS
ACCCTAATTGGTAGTTCTAT+TGG 0.233584 5_3:+6087180 None:intergenic
GGGGCGGTGGTGGTGGGGTT+TGG 0.243215 5_3:+6094226 None:intergenic
TGCATCCTGAGCTGCACTTC+TGG 0.255535 5_3:+6090142 None:intergenic
GTTTGGAAGGGACGGTGGTT+GGG 0.261718 5_3:+6094342 None:intergenic
TCTGCTAGGGTGGGTGGTGG+TGG 0.268527 5_3:-6093546 Msa0794230:CDS
ACCCAATAGAACTACCAATT+AGG 0.272272 5_3:-6087182 Msa0794230:three_prime_UTR
GGGTTTGGGGCGGTGGTGGT+GGG 0.279773 5_3:+6094220 None:intergenic
GCGACGGAAATTGCGGGATT+TGG 0.288173 5_3:+6094394 None:intergenic
TTGATTCCCTATATGGCGTT+TGG 0.291655 5_3:-6088759 Msa0794230:CDS
CCCTAATTGGTAGTTCTATT+GGG 0.292040 5_3:+6087181 None:intergenic
AGAGGAAGAAGAAGAGGGTT+TGG 0.292473 5_3:+6094205 None:intergenic
ATAAATACTGTGCGCCAAAC+TGG 0.304474 5_3:+6087416 None:intergenic
TTCCATCCCTCAACCCTAAT+TGG 0.305972 5_3:+6087168 None:intergenic
GATGCTGCTGCTACAACATT+TGG 0.312332 5_3:+6093447 None:intergenic
AAGAGGGTTTGGGGCGGTGG+TGG 0.313005 5_3:+6094216 None:intergenic
TTTGGAAGGGACGGTGGTTG+GGG 0.318020 5_3:+6094343 None:intergenic
TGGACGAGGGGTTTCGTTAT+CGG 0.321022 5_3:+6094256 None:intergenic
ATTATGAAGTTTCCCATTGC+TGG 0.321705 5_3:-6089344 Msa0794230:CDS
ACAAAATCCTTTCCATCTTC+AGG 0.326125 5_3:+6089438 None:intergenic
GAGGAAGAAGAAGAGGGTTT+GGG 0.326413 5_3:+6094206 None:intergenic
GGTTTGGAAGGGACGGTGGT+TGG 0.334236 5_3:+6094341 None:intergenic
GTCCCTAGACTACAATGTTT+TGG 0.335344 5_3:-6087079 Msa0794230:three_prime_UTR
CAAGGAGGCATTATGAGTTT+AGG 0.337617 5_3:-6088137 Msa0794230:exon
TTCTTGAGTGTTGTTGTTGT+TGG 0.341302 5_3:+6094507 None:intergenic
ACATAGTCTCTTGGTATGTT+GGG 0.342780 5_3:-6088096 Msa0794230:three_prime_UTR
AGGTTTAGGGGCAGAGGGTT+TGG 0.345344 5_3:+6094325 None:intergenic
ATTTATGTTCTTGAGGTGGC+TGG 0.349544 5_3:-6087399 Msa0794230:three_prime_UTR
GGTTTGGGGCGGTGGTGGTG+GGG 0.350796 5_3:+6094221 None:intergenic
GCTTAATTTGTCACTGCAAC+GGG 0.353381 5_3:-6087923 Msa0794230:intron
GCTGTCACTTGGAAAGATTC+TGG 0.355071 5_3:-6088266 Msa0794230:CDS
TCCCTATATGGCGTTTGGGC+TGG 0.356224 5_3:-6088754 Msa0794230:CDS
ACATCCAAAATCGGTGTTGC+TGG 0.356702 5_3:+6093396 None:intergenic
AAGCTATGCTGGACAATGTT+AGG 0.360268 5_3:-6093338 Msa0794230:CDS
TATGTTGGGGAGTTCGGCCC+AGG 0.360668 5_3:-6088082 Msa0794230:three_prime_UTR
AAGAAGAGGGTTTGGGGCGG+TGG 0.362135 5_3:+6094213 None:intergenic
GAAGGGTCTGCTAGGGTGGG+TGG 0.365943 5_3:-6093552 Msa0794230:CDS
GGTTTGGAGGAGCGTGGACG+AGG 0.369115 5_3:+6094242 None:intergenic
GCGGTGGTGGTGGGGTTTGG+AGG 0.372781 5_3:+6094229 None:intergenic
GTCGGCGAAGCTGAGAAGTT+TGG 0.373308 5_3:+6094292 None:intergenic
ACCATCCAACGAAATATAAT+CGG 0.375551 5_3:+6093794 None:intergenic
GAAGGGAGATGGAGAGAAGA+AGG 0.376461 5_3:-6093691 Msa0794230:CDS
GGATGAGGAGGAAGGATTGT+GGG 0.376972 5_3:-6093616 Msa0794230:CDS
GTGATGAAATTCGGAGCATT+TGG 0.377134 5_3:-6087329 Msa0794230:three_prime_UTR
GGGTCTGCTAGGGTGGGTGG+TGG 0.377178 5_3:-6093549 Msa0794230:CDS
AAGCTCACGAAGTGCTTCTA+AGG 0.378762 5_3:+6094094 None:intergenic
CATTTCGTCGTCATTGTTAG+TGG 0.383569 5_3:+6090235 None:intergenic
AACCGGTTCAGAAGAAGGTT+TGG 0.384290 5_3:+6094010 None:intergenic
TGATTCCCTATATGGCGTTT+GGG 0.384712 5_3:-6088758 Msa0794230:CDS
CAAGATCAGTAATCTTCAAA+AGG 0.385604 5_3:+6092162 None:intergenic
TCTTGGTATGTTGGGGAGTT+CGG 0.386190 5_3:-6088088 Msa0794230:three_prime_UTR
AACATAGTCTCTTGGTATGT+TGG 0.388105 5_3:-6088097 Msa0794230:three_prime_UTR
CCCAATAGAACTACCAATTA+GGG 0.390000 5_3:-6087181 Msa0794230:three_prime_UTR
AAAATTGCAGCATATCGATT+TGG 0.390099 5_3:-6088949 Msa0794230:CDS
CCAAAACTTAAAACAGGTTA+AGG 0.391021 5_3:+6087128 None:intergenic
TGCAATGTTTGGTGGGAAGA+AGG 0.391451 5_3:-6093709 Msa0794230:CDS
ATATCAGTCACAGCGAGATT+TGG 0.392471 5_3:-6089898 Msa0794230:CDS
TGTTGAGCAACTTGCACAAC+AGG 0.392622 5_3:+6093516 None:intergenic
AAACCCTTTAAAACAATAAC+CGG 0.393611 5_3:+6093993 None:intergenic
TGTGAAGTGGGTCCCACCTC+AGG 0.397187 5_3:+6089703 None:intergenic
CATCGGCGAATACCAGCATT+GGG 0.397412 5_3:-6093428 Msa0794230:CDS
TTAAAGCAGCTAAGGCTAAG+AGG 0.402087 5_3:-6093848 Msa0794230:CDS
AGCCAGCTTCAAATCCTTGC+AGG 0.402276 5_3:+6087370 None:intergenic
CTCCTTGAGATGGAAGGTTC+TGG 0.403287 5_3:+6088153 None:intergenic
TCGGCGAAGCTGAGAAGTTT+GGG 0.403843 5_3:+6094293 None:intergenic
ATCTCAGCTTGTTGAGATAT+AGG 0.404786 5_3:+6093369 None:intergenic
ACCGGTTCAGAAGAAGGTTT+GGG 0.405371 5_3:+6094011 None:intergenic
GGCTTTGTGTATGAACTTGC+TGG 0.406116 5_3:-6087976 Msa0794230:three_prime_UTR
GCCAGCCCAAACGCCATATA+GGG 0.407016 5_3:+6088753 None:intergenic
CTTCTCTCCGTATGTAAGAT+TGG 0.407770 5_3:-6089730 Msa0794230:CDS
ATGCTGCTGCTACAACATTT+GGG 0.408332 5_3:+6093448 None:intergenic
CAAACAGAATTAGACACATT+TGG 0.408487 5_3:+6087296 None:intergenic
ACCCAAACCTTCTTCTGAAC+CGG 0.411495 5_3:-6094012 Msa0794230:CDS
TACTGAGAAATATTTGCCTT+TGG 0.413069 5_3:-6088912 Msa0794230:CDS
CCCGATTATATTTCGTTGGA+TGG 0.415527 5_3:-6093795 Msa0794230:CDS
TGTCCCAAATTTGGTGGAAA+AGG 0.417465 5_3:-6089385 Msa0794230:CDS
ACCAAACCAAAACTTAAAAC+AGG 0.418349 5_3:+6087122 None:intergenic
TGATCTTGAAAACTCATTAG+TGG 0.421059 5_3:-6092147 Msa0794230:CDS
ACTTATGGATTGCCTGAAGA+TGG 0.421353 5_3:-6089450 Msa0794230:CDS
TTGGTGAAGAGAAGGGATGA+AGG 0.422067 5_3:-6093570 Msa0794230:CDS
ATATATTTGAGATATAATTT+CGG 0.423368 5_3:+6092090 None:intergenic
CCACCAGAGGTTGCAATTTG+CGG 0.423914 5_3:+6088296 None:intergenic
TTTAAAGGGTTTGCTTAAAC+CGG 0.427875 5_3:-6093982 Msa0794230:CDS
GGCTGCCAGAAGTGCAGCTC+AGG 0.428325 5_3:-6090147 Msa0794230:CDS
TGTGAATTTGTGATGAAATT+CGG 0.429574 5_3:-6087338 Msa0794230:three_prime_UTR
GAAGGTTCTGGCCATGGTCC+TGG 0.431263 5_3:+6088165 None:intergenic
TTTGGAGGAGCGTGGACGAG+GGG 0.432677 5_3:+6094244 None:intergenic
GGCCAGCCCAAACGCCATAT+AGG 0.433336 5_3:+6088752 None:intergenic
CCAGTGCAGTTAGATGAGTT+TGG 0.433732 5_3:-6090089 Msa0794230:CDS
GGTTTGGGTTCAGATGAAAT+AGG 0.434359 5_3:+6094026 None:intergenic
AGGATGAGGAGGAAGGATTG+TGG 0.435515 5_3:-6093617 Msa0794230:CDS
TCGTTTCCCTCGTGTGTGTT+TGG 0.441015 5_3:+6094548 None:intergenic
TTCATACACAAAGCCGACTC+TGG 0.441923 5_3:+6087984 None:intergenic
ACAATAACCGGTTCAGAAGA+AGG 0.442201 5_3:+6094005 None:intergenic
TGCTTTAATATCCTCTTCAC+CGG 0.443057 5_3:+6093863 None:intergenic
GGGGTTGAGTGACGAGGAAC+CGG 0.445232 5_3:-6093748 Msa0794230:CDS
AAGCGAGATTTGCTTCTGTT+GGG 0.445346 5_3:-6093914 Msa0794230:CDS
ACGGAAATTGCGGGATTTGG+CGG 0.447191 5_3:+6094397 None:intergenic
TTGTGAGAGGAAGAAGAAGA+GGG 0.448221 5_3:+6094200 None:intergenic
AGTCGGATTCTGAAGAAAAC+GGG 0.453086 5_3:-6093944 Msa0794230:CDS
CCTCCAAAACATTGTAGTCT+AGG 0.457179 5_3:+6087076 None:intergenic
CACTAACAATGACGACGAAA+TGG 0.459420 5_3:-6090234 Msa0794230:CDS
GAAACTTCATAATGGAGAAT+AGG 0.460410 5_3:+6089354 None:intergenic
AGAGGGTTTGGAAGGGACGG+TGG 0.461460 5_3:+6094337 None:intergenic
AGAGGCCGGATTGCAATGTT+TGG 0.461538 5_3:-6093720 Msa0794230:CDS
ATGTGATATGTAGCCCAGTT+TGG 0.462168 5_3:-6087430 Msa0794230:three_prime_UTR
GCAATGTTTGGTGGGAAGAA+GGG 0.462368 5_3:-6093708 Msa0794230:CDS
GCGGGATTTGGCGGAGGACA+TGG 0.464512 5_3:+6094406 None:intergenic
GAAGAAGAGCAGTGTAAGAA+AGG 0.466177 5_3:-6093594 Msa0794230:CDS
AATTGGTAGTTCTATTGGGT+TGG 0.466748 5_3:+6087185 None:intergenic
ACAGATGGACCAACAAAATT+GGG 0.466819 5_3:+6093492 None:intergenic
AACTTAAAACAGGTTAAGGT+TGG 0.468518 5_3:+6087132 None:intergenic
GGTACGGCGACGGAAATTGC+GGG 0.469208 5_3:+6094388 None:intergenic
GAGATTTAAATCTTGAGAAA+CGG 0.470006 5_3:-6090064 Msa0794230:CDS
GAACTACCAATTAGGGTTGA+GGG 0.473314 5_3:-6087174 Msa0794230:three_prime_UTR
GAAAGGATTGGTGAAGAGAA+GGG 0.474186 5_3:-6093577 Msa0794230:CDS
GGTGGTTGGGGTGTCGTCGT+CGG 0.474388 5_3:+6094355 None:intergenic
TGCCTGCAAGGATTTGAAGC+TGG 0.475356 5_3:-6087372 Msa0794230:three_prime_UTR
ATCACATTCTTGCTGTCTGC+AGG 0.475598 5_3:+6087446 None:intergenic
TTTGTGAGAGGAAGAAGAAG+AGG 0.475960 5_3:+6094199 None:intergenic
AGCAATGGGAAACTTCATAA+TGG 0.476899 5_3:+6089346 None:intergenic
GAGAAATATTTGCCTTTGGA+AGG 0.477067 5_3:-6088908 Msa0794230:CDS
GGCGGTGGTGAAAGGTTGTT+TGG 0.477394 5_3:+6094427 None:intergenic
ATCGGCGTCGATTTCGTCGT+CGG 0.477526 5_3:+6094274 None:intergenic
AGGAAGAAGAAGAGGGTTTG+GGG 0.478043 5_3:+6094207 None:intergenic
CAGCCGCAAATTGCAACCTC+TGG 0.478227 5_3:-6088299 Msa0794230:CDS
TTTATGATCATCTATTTCCA+TGG 0.479341 5_3:+6089968 None:intergenic
CACACACGAGGGAAACGAAA+GGG 0.479652 5_3:-6094543 Msa0794230:five_prime_UTR
TGAGAGTGATAGTGAGAGCC+AGG 0.480303 5_3:-6089922 Msa0794230:CDS
GCATCGGCGAATACCAGCAT+TGG 0.480338 5_3:-6093429 Msa0794230:CDS
TGGGCTGGCCCAAGTGTCAC+TGG 0.480457 5_3:-6088739 Msa0794230:CDS
GAAGCGAGATTTGCTTCTGT+TGG 0.481047 5_3:-6093915 Msa0794230:CDS
GAGTCGGATTCTGAAGAAAA+CGG 0.484439 5_3:-6093945 Msa0794230:CDS
ACTAAGCATGTCCCAGCAAT+GGG 0.487780 5_3:+6089332 None:intergenic
TGAGCTTGTCCCAAATTTGG+TGG 0.487990 5_3:-6089391 Msa0794230:CDS
AAGATCAGTAATCTTCAAAA+GGG 0.488296 5_3:+6092163 None:intergenic
AAATCATGATACTCCTGATA+AGG 0.489257 5_3:+6088020 None:intergenic
GGATGAAGGGTCTGCTAGGG+TGG 0.489600 5_3:-6093556 Msa0794230:CDS
TTTCGTTAAACATAGTCTCT+TGG 0.490694 5_3:-6088105 Msa0794230:three_prime_UTR
GTGGCTTATGTGCTGTCACT+TGG 0.490791 5_3:-6088277 Msa0794230:CDS
AGAAAGGATTGGTGAAGAGA+AGG 0.492217 5_3:-6093578 Msa0794230:CDS
TAAACCGGTGACGTCTGAAC+CGG 0.492962 5_3:-6093967 Msa0794230:CDS
ATACTCCTGATAAGGTCAAA+AGG 0.494531 5_3:+6088028 None:intergenic
TTTATGTTCTTGAGGTGGCT+GGG 0.497059 5_3:-6087398 Msa0794230:three_prime_UTR
GAGGACATGGCGGTGGTGAA+AGG 0.497940 5_3:+6094419 None:intergenic
TTATGAAGTTTCCCATTGCT+GGG 0.498610 5_3:-6089343 Msa0794230:CDS
GATGAGGAGGATGAGGAGGA+AGG 0.499599 5_3:-6093624 Msa0794230:CDS
AATCTAAACCCTTGTGAAGT+GGG 0.502571 5_3:+6089691 None:intergenic
GGACAATGTTAGGAGGCTTA+AGG 0.503444 5_3:-6093328 Msa0794230:intron
CCATCTGTTGCAAACGTGTA+TGG 0.505099 5_3:-6093477 Msa0794230:CDS
CCAAACTCATCTAACTGCAC+TGG 0.505277 5_3:+6090089 None:intergenic
CTCATAATGCCTCCTTGAGA+TGG 0.505408 5_3:+6088143 None:intergenic
ATCCCTGGTCAAAACAAGAA+TGG 0.506312 5_3:-6089820 Msa0794230:CDS
TGCTTAATTTGTCACTGCAA+CGG 0.507302 5_3:-6087924 Msa0794230:three_prime_UTR
ATAGGACGAGAAGCGGTTGT+AGG 0.507409 5_3:+6094044 None:intergenic
CCGCAAATTGCAACCTCTGG+TGG 0.509699 5_3:-6088296 Msa0794230:CDS
TTGTGTTGTAGGTCCCTACA+TGG 0.509980 5_3:-6089008 Msa0794230:intron
ATAGGAATGACATCCAAAAT+CGG 0.510391 5_3:+6093387 None:intergenic
GAAGGGATGAAGGGTCTGCT+AGG 0.511351 5_3:-6093560 Msa0794230:CDS
ACAGCGAGATTTGGTGCTGC+AGG 0.513777 5_3:-6089889 Msa0794230:CDS
AGGCTAAGAGGGAGAGGATG+CGG 0.514809 5_3:-6093836 Msa0794230:CDS
AGGGAGAGGATGCGGAAGGC+CGG 0.515080 5_3:-6093828 Msa0794230:CDS
GACTAAGCATGTCCCAGCAA+TGG 0.515288 5_3:+6089331 None:intergenic
CCATACACGTTTGCAACAGA+TGG 0.515484 5_3:+6093477 None:intergenic
GGCCGGATTGCAATGTTTGG+TGG 0.516041 5_3:-6093717 Msa0794230:CDS
TAAAGCAGCTAAGGCTAAGA+GGG 0.516937 5_3:-6093847 Msa0794230:CDS
TCAAAACAAGAATGGAAGAA+TGG 0.517820 5_3:-6089812 Msa0794230:CDS
GAGATGGAAGGTTCTGGCCA+TGG 0.518698 5_3:+6088159 None:intergenic
AGAACTACCAATTAGGGTTG+AGG 0.518854 5_3:-6087175 Msa0794230:three_prime_UTR
AGTAATCATGGCGCTGCGGA+GGG 0.520243 5_3:-6093768 Msa0794230:CDS
AAGGGAGATGGAGAGAAGAA+GGG 0.521292 5_3:-6093690 Msa0794230:CDS
TTTGGTGGGAAGAAGGGAGA+TGG 0.521536 5_3:-6093702 Msa0794230:CDS
TCTGGAGAGAAGAAATGTAC+AGG 0.522631 5_3:-6088248 Msa0794230:CDS
CATCCAAAATCGGTGTTGCT+GGG 0.523149 5_3:+6093397 None:intergenic
AGTGACAAATTAAGCAATGA+AGG 0.524272 5_3:+6087931 None:intergenic
GACGAGGAACCGGAGTATAG+AGG 0.525115 5_3:-6093738 Msa0794230:CDS
AGAGCAGTGTAAGAAAGGAT+TGG 0.526265 5_3:-6093589 Msa0794230:CDS
TTGGATGGTGGAAGTAATCA+TGG 0.528537 5_3:-6093780 Msa0794230:CDS
TCCCACCAAACATTGCAATC+CGG 0.529874 5_3:+6093715 None:intergenic
TTTGGCGGAGGACATGGCGG+TGG 0.532685 5_3:+6094412 None:intergenic
GTTTGGAGGAGCGTGGACGA+GGG 0.533078 5_3:+6094243 None:intergenic
TAAATACTGTGCGCCAAACT+GGG 0.533792 5_3:+6087417 None:intergenic
TGATGCTGTTGCTAAACTTA+CGG 0.534171 5_3:-6089199 Msa0794230:intron
GCACAGTATTTATGTTCTTG+AGG 0.534703 5_3:-6087406 Msa0794230:three_prime_UTR
GGCAGAGGGTTTGGAAGGGA+CGG 0.537729 5_3:+6094334 None:intergenic
ATAATCGGGTGCAGCAGCAC+CGG 0.538039 5_3:+6093809 None:intergenic
TGCACCCGATTATATTTCGT+TGG 0.539945 5_3:-6093799 Msa0794230:CDS
CTCGCTGTGACTGATATGCC+TGG 0.540448 5_3:+6089904 None:intergenic
AAGTAATCATGGCGCTGCGG+AGG 0.541514 5_3:-6093769 Msa0794230:CDS
CAGCTAAGGCTAAGAGGGAG+AGG 0.542351 5_3:-6093842 Msa0794230:CDS
GTGGCTGGGATTTGCCTGCA+AGG 0.542832 5_3:-6087384 Msa0794230:three_prime_UTR
GGTGGTTGATGAGGAGGATG+AGG 0.546740 5_3:-6093631 Msa0794230:CDS
CTCCAAAACATTGTAGTCTA+GGG 0.547055 5_3:+6087077 None:intergenic
GCATCTTTCACTCCCAGAGT+CGG 0.550538 5_3:-6087997 Msa0794230:three_prime_UTR
AAGGGATGAAGGGTCTGCTA+GGG 0.550731 5_3:-6093559 Msa0794230:CDS
CGGTACGGCGACGGAAATTG+CGG 0.552419 5_3:+6094387 None:intergenic
TGTCGATGTGGTGGTTGATG+AGG 0.554191 5_3:-6093640 Msa0794230:CDS
CACTTGAGAAGGCTAACCCT+GGG 0.555297 5_3:+6088065 None:intergenic
AAGCGGTTGTAGGAGTGACT+AGG 0.555541 5_3:+6094054 None:intergenic
AGAGGATATTAAAGCAGCTA+AGG 0.556189 5_3:-6093856 Msa0794230:CDS
GCCGGATTGCAATGTTTGGT+GGG 0.557759 5_3:-6093716 Msa0794230:CDS
GAAATTGCGGGATTTGGCGG+AGG 0.560318 5_3:+6094400 None:intergenic
TGGATTGCCTGAAGATGGAA+AGG 0.560781 5_3:-6089445 Msa0794230:CDS
GGCCAGAACCTTCCATCTCA+AGG 0.561957 5_3:-6088155 Msa0794230:CDS
GTACTAGTGGACTCCATGTA+GGG 0.564438 5_3:+6088995 None:intergenic
CCAAATTTGGGACAAGCTCA+AGG 0.564443 5_3:+6089394 None:intergenic
GATTATATTTCGTTGGATGG+TGG 0.564911 5_3:-6093792 Msa0794230:CDS
TGGTGAAGAGAAGGGATGAA+GGG 0.566653 5_3:-6093569 Msa0794230:CDS
GGAACATATGAAACTAATTG+AGG 0.569143 5_3:-6087955 Msa0794230:three_prime_UTR
AAATGTTGTAGCAGCAGCAT+CGG 0.570378 5_3:-6093445 Msa0794230:CDS
AGTACTAGTGGACTCCATGT+AGG 0.570562 5_3:+6088994 None:intergenic
AAATCTAAACCCTTGTGAAG+TGG 0.570577 5_3:+6089690 None:intergenic
CAGTATTTATGTTCTTGAGG+TGG 0.572317 5_3:-6087403 Msa0794230:three_prime_UTR
GCTTGAGGTTGAACATTGGA+AGG 0.572614 5_3:+6094128 None:intergenic
TTAGGGGCAGAGGGTTTGGA+AGG 0.572666 5_3:+6094329 None:intergenic
GATGAAGGGTCTGCTAGGGT+GGG 0.573145 5_3:-6093555 Msa0794230:CDS
TCCAATGTTCAACCTCAAGC+TGG 0.573810 5_3:-6094125 Msa0794230:CDS
CCATCCAACGAAATATAATC+GGG 0.574191 5_3:+6093795 None:intergenic
TCAATGAATATGATCATGCC+AGG 0.574695 5_3:-6088183 Msa0794230:CDS
TCATACACAAAGCCGACTCT+GGG 0.575616 5_3:+6087985 None:intergenic
ATGTTGGGGAGTTCGGCCCA+GGG 0.576619 5_3:-6088081 Msa0794230:three_prime_UTR
GGATGAGAGGTTTGTCGATG+TGG 0.578395 5_3:-6093652 Msa0794230:CDS
GGTTGATGAGGAGGATGAGG+AGG 0.578870 5_3:-6093628 Msa0794230:CDS
CGATGTGGTGGTTGATGAGG+AGG 0.579918 5_3:-6093637 Msa0794230:CDS
AATAGATGATCATAAAGTAG+AGG 0.580527 5_3:-6089961 Msa0794230:CDS
CAATGACGACGAAATGGTTG+AGG 0.582119 5_3:-6090228 Msa0794230:CDS
AGGAGTTCCAATCTTACATA+CGG 0.583616 5_3:+6089723 None:intergenic
TGGTGGGGTTTGGAGGAGCG+TGG 0.584019 5_3:+6094236 None:intergenic
CTGAGGCTCGTCAACGCAGG+AGG 0.585117 5_3:-6090022 Msa0794230:CDS
GGAATATAGTCAATTATCCC+TGG 0.587507 5_3:-6089835 Msa0794230:CDS
CATAGTCTCTTGGTATGTTG+GGG 0.588680 5_3:-6088095 Msa0794230:three_prime_UTR
GAGGTGGGACCCACTTCACA+AGG 0.589764 5_3:-6089700 Msa0794230:CDS
TAATGCCTCCTTGAGATGGA+AGG 0.592091 5_3:+6088147 None:intergenic
TGGCTGAGGCTCGTCAACGC+AGG 0.592093 5_3:-6090025 Msa0794230:CDS
ACGGAAGAAAATGAAAGTGA+TGG 0.593973 5_3:-6090045 Msa0794230:CDS
AGTTAGTGTCGGTACGGCGA+CGG 0.595495 5_3:+6094378 None:intergenic
GGAACAGCAGCTAGTACTAG+TGG 0.596202 5_3:+6088982 None:intergenic
ATAGATGATCATAAAGTAGA+GGG 0.596739 5_3:-6089960 Msa0794230:CDS
CGAAACTAGCAGATCTGCAA+GGG 0.598859 5_3:+6089239 None:intergenic
TCTGAAGTACTCACTTGAGA+AGG 0.598945 5_3:+6088054 None:intergenic
ATCAGTAATCTTCAAAAGGG+AGG 0.599810 5_3:+6092166 None:intergenic
TCGAAACTAGCAGATCTGCA+AGG 0.605083 5_3:+6089238 None:intergenic
TGGCATGATCATATTCATTG+AGG 0.605222 5_3:+6088185 None:intergenic
TAAGATTGGAACTCCTGAGG+TGG 0.605796 5_3:-6089716 Msa0794230:CDS
TACCAATTAGGGTTGAGGGA+TGG 0.607290 5_3:-6087170 Msa0794230:three_prime_UTR
TCTGATATGCTTCTAAAGTG+AGG 0.607880 5_3:+6088820 None:intergenic
CACAAATGACAGGAATCACA+TGG 0.609144 5_3:-6092233 Msa0794230:intron
AATTAGGGTTGAGGGATGGA+AGG 0.609579 5_3:-6087166 Msa0794230:three_prime_UTR
CGTCGGAGTTAGTGTCGGTA+CGG 0.610527 5_3:+6094372 None:intergenic
ACCAGCTTGAGGTTGAACAT+TGG 0.610869 5_3:+6094124 None:intergenic
GTAATCATGGCGCTGCGGAG+GGG 0.610897 5_3:-6093767 Msa0794230:CDS
TCACTTGAGAAGGCTAACCC+TGG 0.612383 5_3:+6088064 None:intergenic
AGGAACCGGAGTATAGAGGC+CGG 0.612699 5_3:-6093734 Msa0794230:CDS
AATTCGGAGCATTTGGTACG+AGG 0.613315 5_3:-6087322 Msa0794230:three_prime_UTR
TCGGCGAATACCAGCATTGG+GGG 0.614034 5_3:-6093426 Msa0794230:CDS
GAAGATCAGTGGAAGACTCA+CGG 0.616090 5_3:+6089749 None:intergenic
TGCGGAGGGGTTGAGTGACG+AGG 0.618970 5_3:-6093754 Msa0794230:CDS
AAGAAGAAGAGGGTTTGGGG+CGG 0.619600 5_3:+6094210 None:intergenic
AGCGGTTGTAGGAGTGACTA+GGG 0.620321 5_3:+6094055 None:intergenic
GTCGTCGTCGGAGTTAGTGT+CGG 0.620489 5_3:+6094367 None:intergenic
CTATGCTGGACAATGTTAGG+AGG 0.621020 5_3:-6093335 Msa0794230:CDS
TAGGGGCAGAGGGTTTGGAA+GGG 0.622704 5_3:+6094330 None:intergenic
GCAATCCGGCCTCTATACTC+CGG 0.626207 5_3:+6093729 None:intergenic
ACGAAGTGCTTCTAAGGTGT+AGG 0.628934 5_3:+6094100 None:intergenic
ACACACACGAGGGAAACGAA+AGG 0.630493 5_3:-6094544 Msa0794230:five_prime_UTR
TAAGAGGGAGAGGATGCGGA+AGG 0.631007 5_3:-6093832 Msa0794230:CDS
GCTTTAATATCCTCTTCACC+GGG 0.632476 5_3:+6093864 None:intergenic
AAGGTGTAGGTACCAGCTTG+AGG 0.635635 5_3:+6094113 None:intergenic
ACACACGAGGGAAACGAAAG+GGG 0.635967 5_3:-6094542 Msa0794230:five_prime_UTR
GAAAATGAAAGTGATGGCTG+AGG 0.637984 5_3:-6090039 Msa0794230:CDS
GGTTGAACATTGGAAGGTGA+AGG 0.640065 5_3:+6094134 None:intergenic
TTGCAAATATGTCCTTCCAA+AGG 0.640067 5_3:+6088896 None:intergenic
GACTCCGGTTCAGACGTCAC+CGG 0.640605 5_3:+6093963 None:intergenic
AGATGAAATAGGACGAGAAG+CGG 0.643147 5_3:+6094037 None:intergenic
GCGAAGCTGAGAAGTTTGGG+TGG 0.643668 5_3:+6094296 None:intergenic
AAGATTGGAACTCCTGAGGT+GGG 0.645146 5_3:-6089715 Msa0794230:CDS
ACATTGGAAGGTGAAGGTGA+AGG 0.648175 5_3:+6094140 None:intergenic
AGCATCACTGAAAATCTCAT+CGG 0.649221 5_3:+6089863 None:intergenic
TGAGAGGTTTGTCGATGTGG+TGG 0.649832 5_3:-6093649 Msa0794230:CDS
ATATGATCATGCCAGGACCA+TGG 0.660979 5_3:-6088176 Msa0794230:CDS
ATGTAAGATTGGAACTCCTG+AGG 0.665048 5_3:-6089719 Msa0794230:CDS
AAACGCACCAAACACACACG+AGG 0.665257 5_3:-6094555 Msa0794230:five_prime_UTR
ATCGGCGAATACCAGCATTG+GGG 0.671713 5_3:-6093427 Msa0794230:CDS
ATGCAATAACAAGAACAGAA+CGG 0.677815 5_3:-6088786 Msa0794230:CDS
GGATTTGGCGGAGGACATGG+CGG 0.680780 5_3:+6094409 None:intergenic
ACATACGGAGAGAAGATCAG+TGG 0.686418 5_3:+6089738 None:intergenic
CAGGAAAGGTGACAACGTGG+AGG 0.699343 5_3:-6090168 Msa0794230:CDS
AGGTGGGACCCACTTCACAA+GGG 0.699494 5_3:-6089699 Msa0794230:CDS
TGGAAGTAATCATGGCGCTG+CGG 0.699526 5_3:-6093772 Msa0794230:CDS
GACAGCACATAAGCCACCAG+AGG 0.711177 5_3:+6088283 None:intergenic
GTCGGATTCTGAAGAAAACG+GGG 0.721229 5_3:-6093943 Msa0794230:CDS
AAGCAGGAAAGGTGACAACG+TGG 0.725920 5_3:-6090171 Msa0794230:CDS
AACGCACCAAACACACACGA+GGG 0.726701 5_3:-6094554 Msa0794230:five_prime_UTR
CAGAACCTTCCATCTCAAGG+AGG 0.749650 5_3:-6088152 Msa0794230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATATTTGAGATATAATTT+CGG + chr5_3:6089552-6089571 None:intergenic 10.0%
!! AAAAAAAAAATTGATTGTAT+TGG - chr5_3:6091114-6091133 Msa0794230:intron 10.0%
!! TGATTTATATACTATATATT+GGG - chr5_3:6092547-6092566 Msa0794230:intron 10.0%
!! TTGAATATATTGTTTATAAA+AGG - chr5_3:6094424-6094443 Msa0794230:exon 10.0%
!! TGATAATTAGATATTGATAT+AGG - chr5_3:6088649-6088668 Msa0794230:intron 15.0%
!! GATAATTAGATATTGATATA+GGG - chr5_3:6088650-6088669 Msa0794230:intron 15.0%
!! ATTAATCATATAAGAATTCA+AGG - chr5_3:6090135-6090154 Msa0794230:CDS 15.0%
!! AATTATACAATGATGTAAAA+AGG - chr5_3:6090692-6090711 Msa0794230:intron 15.0%
!! TAATACAACAAATAATTTCA+TGG - chr5_3:6091061-6091080 Msa0794230:intron 15.0%
!! AAAAATGGAAAATATAGAAT+AGG + chr5_3:6091997-6092016 None:intergenic 15.0%
!!! TATAAATTGTTATTCACTTA+TGG - chr5_3:6092174-6092193 Msa0794230:CDS 15.0%
!! GTGATTTATATACTATATAT+TGG - chr5_3:6092546-6092565 Msa0794230:intron 15.0%
!! TGTAAAATCTCATAATAATA+CGG - chr5_3:6094016-6094035 Msa0794230:CDS 15.0%
!! CACTTATATGATACATTAAA+TGG + chr5_3:6088521-6088540 None:intergenic 20.0%
!! ATCAATATCTAATTATCAAC+AGG + chr5_3:6088647-6088666 None:intergenic 20.0%
!!! TCTTTTATCATATGTAATCA+AGG + chr5_3:6088852-6088871 None:intergenic 20.0%
!!! TCTTTTATCATATGTAATCA+AGG + chr5_3:6088852-6088871 None:intergenic 20.0%
!! TGTTGTATATGATTATGAAT+AGG - chr5_3:6089144-6089163 Msa0794230:intron 20.0%
!!! TTATTTTTCAGATCCAAATA+TGG - chr5_3:6089250-6089269 Msa0794230:CDS 20.0%
!! TTTAATTAAGAAGGAAGATA+AGG + chr5_3:6089624-6089643 None:intergenic 20.0%
!! CTTCTTAATTAAACAAAAGT+GGG - chr5_3:6089631-6089650 Msa0794230:intron 20.0%
!! TACTTCATTAGTAAAATAGA+AGG + chr5_3:6089743-6089762 None:intergenic 20.0%
!! AAAATAGATCAAAGAACTTA+AGG + chr5_3:6089831-6089850 None:intergenic 20.0%
!!! AAATTTTTGATGTGCTTATA+AGG - chr5_3:6090020-6090039 Msa0794230:CDS 20.0%
!!! TAACAGCACTTTTTTTTTTT+TGG + chr5_3:6090407-6090426 None:intergenic 20.0%
!!! ATTTTAAGTGTTGGATATTT+AGG - chr5_3:6090534-6090553 Msa0794230:intron 20.0%
!! TGATTTAATATGTAGTGTTA+TGG - chr5_3:6090643-6090662 Msa0794230:intron 20.0%
!! TATATGCTCATATAACTATT+TGG + chr5_3:6090836-6090855 None:intergenic 20.0%
!! TTTATTTGTCTCCAATAAAT+AGG + chr5_3:6091031-6091050 None:intergenic 20.0%
!! AAATAATTTCATGGTTATCA+TGG - chr5_3:6091070-6091089 Msa0794230:intron 20.0%
!!! TAGATTTTCAAGATATGAAA+TGG - chr5_3:6091965-6091984 Msa0794230:intron 20.0%
!! TCAAGAAAGAATACTAAAAA+TGG + chr5_3:6092012-6092031 None:intergenic 20.0%
!!! ATTCTTTCTTGAATCTTTTT+AGG - chr5_3:6092020-6092039 Msa0794230:intron 20.0%
!!! TTCTTTCTTGAATCTTTTTA+GGG - chr5_3:6092021-6092040 Msa0794230:intron 20.0%
!!! TATTTGTTTTGTTCATTTTC+TGG - chr5_3:6092512-6092531 Msa0794230:intron 20.0%
!!! TTTACAAAATTTGTTCTCTA+GGG + chr5_3:6093848-6093867 None:intergenic 20.0%
!!! TTTTACAAAATTTGTTCTCT+AGG + chr5_3:6093849-6093868 None:intergenic 20.0%
!! GTAAAATCTCATAATAATAC+GGG - chr5_3:6094017-6094036 Msa0794230:CDS 20.0%
!! TAAAATCTCATAATAATACG+GGG - chr5_3:6094018-6094037 Msa0794230:CDS 20.0%
!!! AAACCCTTTAAAACAATAAC+CGG + chr5_3:6087649-6087668 None:intergenic 25.0%
! CATCAAAAGAATCATAATTG+TGG - chr5_3:6088548-6088567 Msa0794230:intron 25.0%
!! AATCATAATTGTGGTTTTCT+TGG - chr5_3:6088557-6088576 Msa0794230:intron 25.0%
! TGATGGTTAAAAGAAAAGAA+TGG - chr5_3:6089023-6089042 Msa0794230:intron 25.0%
!!! TTTTAAGGGACCAATAATAT+AGG - chr5_3:6089055-6089074 Msa0794230:intron 25.0%
! AAACTATGTTTGTGCTTAAA+TGG - chr5_3:6089093-6089112 Msa0794230:intron 25.0%
! AACTATGTTTGTGCTTAAAT+GGG - chr5_3:6089094-6089113 Msa0794230:intron 25.0%
! ATGATTATGAATAGGTAAAC+AGG - chr5_3:6089152-6089171 Msa0794230:intron 25.0%
! ATTCTCACATAAACCATATT+TGG + chr5_3:6089266-6089285 None:intergenic 25.0%
!!! TATACAGCTTTATTTTTCTG+CGG - chr5_3:6089348-6089367 Msa0794230:CDS 25.0%
! AAGATCAGTAATCTTCAAAA+GGG + chr5_3:6089479-6089498 None:intergenic 25.0%
!! AAATATATGCGACTTTTTAC+AGG - chr5_3:6089564-6089583 Msa0794230:intron 25.0%
!!! CCACTTTTGTTTAATTAAGA+AGG + chr5_3:6089633-6089652 None:intergenic 25.0%
! CCTTCTTAATTAAACAAAAG+TGG - chr5_3:6089630-6089649 Msa0794230:intron 25.0%
!! CTTCGATAAGTAATTTTGTA+CGG + chr5_3:6089663-6089682 None:intergenic 25.0%
! ATACTAGTGATATTATGACA+GGG + chr5_3:6089695-6089714 None:intergenic 25.0%
! AATACTAGTGATATTATGAC+AGG + chr5_3:6089696-6089715 None:intergenic 25.0%
! AAATAAACACTTACGAGTTT+AGG - chr5_3:6089924-6089943 Msa0794230:CDS 25.0%
!! GTTTATTCTAGGAATTAAGA+TGG + chr5_3:6090313-6090332 None:intergenic 25.0%
!!! AATAAACTCATAGCTTTGTT+TGG - chr5_3:6090326-6090345 Msa0794230:intron 25.0%
!!! ATAAACTCATAGCTTTGTTT+GGG - chr5_3:6090327-6090346 Msa0794230:intron 25.0%
!!! TTTTTTTTTGGCATATTTGC+TGG + chr5_3:6090395-6090414 None:intergenic 25.0%
! TTTAGTCTATGTATGTATTG+TGG - chr5_3:6090468-6090487 Msa0794230:intron 25.0%
!! ATTGTGGATTTTCCTATTTT+AGG - chr5_3:6090484-6090503 Msa0794230:intron 25.0%
!!! AAAATGAGGATTTTAAGTGT+TGG - chr5_3:6090525-6090544 Msa0794230:intron 25.0%
! ATAAAAAGCAACACATAGAA+AGG + chr5_3:6090945-6090964 None:intergenic 25.0%
! TCTTAAAGCAACACATAAAA+AGG - chr5_3:6091150-6091169 Msa0794230:intron 25.0%
! GAGATTTAAATCTTGAGAAA+CGG - chr5_3:6091575-6091594 Msa0794230:intron 25.0%
!!! AGCTTTTGATTCTAAAAAGT+CGG - chr5_3:6091645-6091664 Msa0794230:intron 25.0%
! TTTATGATCATCTATTTCCA+TGG + chr5_3:6091674-6091693 None:intergenic 25.0%
! AATAGATGATCATAAAGTAG+AGG - chr5_3:6091678-6091697 Msa0794230:intron 25.0%
! ATAGATGATCATAAAGTAGA+GGG - chr5_3:6091679-6091698 Msa0794230:intron 25.0%
!! TCTTTCTTGAATCTTTTTAG+GGG - chr5_3:6092022-6092041 Msa0794230:intron 25.0%
! AAAACTCTACCATAAATTCA+AGG + chr5_3:6092116-6092135 None:intergenic 25.0%
! TTAACTAGTAAAGCAGTATA+TGG - chr5_3:6092489-6092508 Msa0794230:intron 25.0%
!! TGTCAAAGTTTTTGTGAAAT+TGG - chr5_3:6092949-6092968 Msa0794230:intron 25.0%
! TTAGAATACCAGAAATAACT+TGG - chr5_3:6093048-6093067 Msa0794230:intron 25.0%
! TAGAATACCAGAAATAACTT+GGG - chr5_3:6093049-6093068 Msa0794230:intron 25.0%
! TGTATGCACTACATATAATA+AGG + chr5_3:6093239-6093258 None:intergenic 25.0%
! TTATATTAACACACATGAAG+AGG + chr5_3:6093274-6093293 None:intergenic 25.0%
! TAAATAATCACAGTAGAGAA+AGG + chr5_3:6093876-6093895 None:intergenic 25.0%
! AAAATCTCATAATAATACGG+GGG - chr5_3:6094019-6094038 Msa0794230:CDS 25.0%
! ATTTAACCAATTTGTAGCAA+TGG - chr5_3:6094046-6094065 Msa0794230:CDS 25.0%
! TGTGAATTTGTGATGAAATT+CGG - chr5_3:6094301-6094320 Msa0794230:CDS 25.0%
!!! AACTATTCTGTTTTTGTGAG+TGG + chr5_3:6087470-6087489 None:intergenic 30.0%
!!! TGAACCGGTTATTGTTTTAA+AGG - chr5_3:6087642-6087661 Msa0794230:intron 30.0%
!!! GAACCGGTTATTGTTTTAAA+GGG - chr5_3:6087643-6087662 Msa0794230:intron 30.0%
! TTTAAAGGGTTTGCTTAAAC+CGG - chr5_3:6087657-6087676 Msa0794230:intron 30.0%
ACCATCCAACGAAATATAAT+CGG + chr5_3:6087848-6087867 None:intergenic 30.0%
ATAGGAATGACATCCAAAAT+CGG + chr5_3:6088255-6088274 None:intergenic 30.0%
AATTAATGATCTCATGCACA+TGG - chr5_3:6088399-6088418 Msa0794230:intron 30.0%
!!! AATGGCGATAGTTGTTTTAA+GGG - chr5_3:6089041-6089060 Msa0794230:intron 30.0%
AAAAAGCAAGTACCTATTGA+CGG + chr5_3:6089212-6089231 None:intergenic 30.0%
TGGTTTATGTGAGAATGTTA+TGG - chr5_3:6089270-6089289 Msa0794230:CDS 30.0%
CAAGATCAGTAATCTTCAAA+AGG + chr5_3:6089480-6089499 None:intergenic 30.0%
TGATCTTGAAAACTCATTAG+TGG - chr5_3:6089492-6089511 Msa0794230:intron 30.0%
CGTACAAAATTACTTATCGA+AGG - chr5_3:6089661-6089680 Msa0794230:intron 30.0%
!!! AGTAGCTACATTGATTTTGA+TGG - chr5_3:6089759-6089778 Msa0794230:CDS 30.0%
!!! TACATTGATTTTGATGGTAG+TGG - chr5_3:6089765-6089784 Msa0794230:CDS 30.0%
! TGTGAAATATGTACTGATGA+AGG - chr5_3:6089959-6089978 Msa0794230:CDS 30.0%
! GTGAAATATGTACTGATGAA+GGG - chr5_3:6089960-6089979 Msa0794230:CDS 30.0%
! TGAAATATGTACTGATGAAG+GGG - chr5_3:6089961-6089980 Msa0794230:CDS 30.0%
! TTTTTGATGTGCTTATAAGG+AGG - chr5_3:6090023-6090042 Msa0794230:CDS 30.0%
CAACATCAACCAATTTAGAA+TGG + chr5_3:6090055-6090074 None:intergenic 30.0%
!!! TTGATGTTGCTATTTTTGTG+TGG - chr5_3:6090066-6090085 Msa0794230:CDS 30.0%
AGTAATATTCCATCCTACAT+AGG + chr5_3:6090182-6090201 None:intergenic 30.0%
TGGTCATTACAAAATGATAG+TGG + chr5_3:6090280-6090299 None:intergenic 30.0%
! TTCTAGGAATTAAGATGGAA+TGG + chr5_3:6090308-6090327 None:intergenic 30.0%
CAAAGCTATGAGTTTATTCT+AGG + chr5_3:6090324-6090343 None:intergenic 30.0%
TGATGGAAGAATGTAAAATG+AGG - chr5_3:6090511-6090530 Msa0794230:intron 30.0%
!!! ATTTTGATTAATTCCCTTGC+TGG - chr5_3:6090557-6090576 Msa0794230:intron 30.0%
!!! CTGCTATTTTTTACCAAACA+GGG + chr5_3:6090606-6090625 None:intergenic 30.0%
!!! TCTGCTATTTTTTACCAAAC+AGG + chr5_3:6090607-6090626 None:intergenic 30.0%
TGGTAAAAAATAGCAGATAG+CGG - chr5_3:6090610-6090629 Msa0794230:intron 30.0%
! TTTTCCCAATTAAGATGATG+AGG - chr5_3:6090729-6090748 Msa0794230:intron 30.0%
TTTCCCAATTAAGATGATGA+GGG - chr5_3:6090730-6090749 Msa0794230:intron 30.0%
TTACCCTCATCATCTTAATT+GGG + chr5_3:6090736-6090755 None:intergenic 30.0%
TTTACCCTCATCATCTTAAT+TGG + chr5_3:6090737-6090756 None:intergenic 30.0%
GGAGACAAATAAATGAAATG+AGG - chr5_3:6091038-6091057 Msa0794230:intron 30.0%
! TGTAACTTTTGCTAATGCTA+AGG - chr5_3:6091273-6091292 Msa0794230:intron 30.0%
TCAAAACAAGAATGGAAGAA+TGG - chr5_3:6091827-6091846 Msa0794230:intron 30.0%
GTTTACCTTCCTTGAATTTA+TGG - chr5_3:6092104-6092123 Msa0794230:CDS 30.0%
CTCTCTCTCTCTTTATATTT+AGG - chr5_3:6092151-6092170 Msa0794230:CDS 30.0%
! GAAACTTCATAATGGAGAAT+AGG + chr5_3:6092288-6092307 None:intergenic 30.0%
!! TTGTTTTGTTCATTTTCTGG+TGG - chr5_3:6092515-6092534 Msa0794230:intron 30.0%
ATACTATATATTGGGCTTGT+AGG - chr5_3:6092555-6092574 Msa0794230:intron 30.0%
AGGAACTAGTAAACTAGTAA+CGG - chr5_3:6092575-6092594 Msa0794230:intron 30.0%
! AAAATTGCAGCATATCGATT+TGG - chr5_3:6092690-6092709 Msa0794230:intron 30.0%
TACTGAGAAATATTTGCCTT+TGG - chr5_3:6092727-6092746 Msa0794230:intron 30.0%
ATGCAATAACAAGAACAGAA+CGG - chr5_3:6092853-6092872 Msa0794230:intron 30.0%
! CAAAGTTTTTGTGAAATTGG+TGG - chr5_3:6092952-6092971 Msa0794230:intron 30.0%
ATATGCAAATGTCTCATCAA+AGG + chr5_3:6092991-6093010 None:intergenic 30.0%
TCTTCTTATCATGTTACTGT+CGG - chr5_3:6093025-6093044 Msa0794230:intron 30.0%
AGAATACCAGAAATAACTTG+GGG - chr5_3:6093050-6093069 Msa0794230:intron 30.0%
CACAAAGAAGCAAATCAATT+AGG + chr5_3:6093171-6093190 None:intergenic 30.0%
!! CTAATTGATTTGCTTCTTTG+TGG - chr5_3:6093169-6093188 Msa0794230:intron 30.0%
AACAAAAATAGAGAAGGACA+TGG + chr5_3:6093319-6093338 None:intergenic 30.0%
TTTCGTTAAACATAGTCTCT+TGG - chr5_3:6093534-6093553 Msa0794230:CDS 30.0%
AAATCATGATACTCCTGATA+AGG + chr5_3:6093622-6093641 None:intergenic 30.0%
GGAACATATGAAACTAATTG+AGG - chr5_3:6093684-6093703 Msa0794230:CDS 30.0%
AGTGACAAATTAAGCAATGA+AGG + chr5_3:6093711-6093730 None:intergenic 30.0%
!!! ACATATGCATTTTTGGTTCT+TGG + chr5_3:6093751-6093770 None:intergenic 30.0%
! AGATGGTACATATGCATTTT+TGG + chr5_3:6093758-6093777 None:intergenic 30.0%
!! TATTTTGAATCAAGTTCGAG+TGG - chr5_3:6093947-6093966 Msa0794230:CDS 30.0%
TAACTATCTAAACACATTGC+CGG + chr5_3:6093982-6094001 None:intergenic 30.0%
CAAACAGAATTAGACACATT+TGG + chr5_3:6094346-6094365 None:intergenic 30.0%
AACTTAAAACAGGTTAAGGT+TGG + chr5_3:6094510-6094529 None:intergenic 30.0%
CCAAAACTTAAAACAGGTTA+AGG + chr5_3:6094514-6094533 None:intergenic 30.0%
!!! CCTTAACCTGTTTTAAGTTT+TGG - chr5_3:6094511-6094530 Msa0794230:five_prime_UTR 30.0%
!!! ACCTGTTTTAAGTTTTGGTT+TGG - chr5_3:6094516-6094535 Msa0794230:five_prime_UTR 30.0%
ACCAAACCAAAACTTAAAAC+AGG + chr5_3:6094520-6094539 None:intergenic 30.0%
! TTCTTGAGTGTTGTTGTTGT+TGG + chr5_3:6087135-6087154 None:intergenic 35.0%
!!! TGGGTGGTTTTTTAGGTTTA+GGG + chr5_3:6087330-6087349 None:intergenic 35.0%
!!! TTGGGTGGTTTTTTAGGTTT+AGG + chr5_3:6087331-6087350 None:intergenic 35.0%
!!! AGAAGTTTGGGTGGTTTTTT+AGG + chr5_3:6087337-6087356 None:intergenic 35.0%
!!! GAGAAAGATTCGTTTTTTCC+CGG - chr5_3:6087757-6087776 Msa0794230:intron 35.0%
TGCTTTAATATCCTCTTCAC+CGG + chr5_3:6087779-6087798 None:intergenic 35.0%
AGAGGATATTAAAGCAGCTA+AGG - chr5_3:6087783-6087802 Msa0794230:intron 35.0%
CCATCCAACGAAATATAATC+GGG + chr5_3:6087847-6087866 None:intergenic 35.0%
GATTATATTTCGTTGGATGG+TGG - chr5_3:6087847-6087866 Msa0794230:intron 35.0%
ACAGATGGACCAACAAAATT+GGG + chr5_3:6088150-6088169 None:intergenic 35.0%
AACAGATGGACCAACAAAAT+TGG + chr5_3:6088151-6088170 None:intergenic 35.0%
!! ATCTCAGCTTGTTGAGATAT+AGG + chr5_3:6088273-6088292 None:intergenic 35.0%
GATTGCAAAAAAAGCTATGC+TGG - chr5_3:6088290-6088309 Msa0794230:CDS 35.0%
GTACCAAACTCATTTGTATC+AGG - chr5_3:6088354-6088373 Msa0794230:intron 35.0%
! TGTGGTTTTCTTGGTAAGAA+AGG - chr5_3:6088566-6088585 Msa0794230:intron 35.0%
! CATCATATTTTACAACCCTC+TGG + chr5_3:6089008-6089027 None:intergenic 35.0%
CAGAGGGTTGTAAAATATGA+TGG - chr5_3:6089006-6089025 Msa0794230:intron 35.0%
!! GAATGGCGATAGTTGTTTTA+AGG - chr5_3:6089040-6089059 Msa0794230:intron 35.0%
GCACGTTAAGCCTATATTAT+TGG + chr5_3:6089068-6089087 None:intergenic 35.0%
! AAAGTCTTATCCCACTAAGT+GGG + chr5_3:6089320-6089339 None:intergenic 35.0%
! ATGTGATTCCTGTCATTTGT+GGG + chr5_3:6089407-6089426 None:intergenic 35.0%
ATCAGTAATCTTCAAAAGGG+AGG + chr5_3:6089476-6089495 None:intergenic 35.0%
! TATGCGACTTTTTACAGGTA+AGG - chr5_3:6089569-6089588 Msa0794230:intron 35.0%
TTGGAAGAATGCACGAAATA+AGG + chr5_3:6089598-6089617 None:intergenic 35.0%
AAGAAGGAAGATAAGGAACT+TGG + chr5_3:6089617-6089636 None:intergenic 35.0%
!!! TGATTTTGATGGTAGTGGAA+AGG - chr5_3:6089770-6089789 Msa0794230:CDS 35.0%
!! GTGTTTATTTTCAGTCGTTG+TGG + chr5_3:6089914-6089933 None:intergenic 35.0%
! GAAATATGTACTGATGAAGG+GGG - chr5_3:6089962-6089981 Msa0794230:CDS 35.0%
!! AGGAAGTGTCCATTCTAAAT+TGG - chr5_3:6090043-6090062 Msa0794230:CDS 35.0%
!! AATTTGTTGTCCAAAGTGGT+AGG - chr5_3:6090091-6090110 Msa0794230:CDS 35.0%
!! ATTTGTTGTCCAAAGTGGTA+GGG - chr5_3:6090092-6090111 Msa0794230:CDS 35.0%
AACAACATTCTTGCCTATGT+AGG - chr5_3:6090166-6090185 Msa0794230:CDS 35.0%
TGTCAAAATTGCAATCTGAC+AGG - chr5_3:6090208-6090227 Msa0794230:CDS 35.0%
!! AAATGATAGTGGAGATGAAG+AGG + chr5_3:6090269-6090288 None:intergenic 35.0%
ATTAAGATGGAATGGAGCAA+TGG + chr5_3:6090300-6090319 None:intergenic 35.0%
!!! CAAATTTTTGGCTTGAGCAA+AGG + chr5_3:6090434-6090453 None:intergenic 35.0%
! GTAGCAAGGACTCAAATTTT+TGG + chr5_3:6090446-6090465 None:intergenic 35.0%
ACATAGACTAAAGAGTAGCA+AGG + chr5_3:6090460-6090479 None:intergenic 35.0%
!!! TTCCTATTTTAGGTTGCTGA+TGG - chr5_3:6090494-6090513 Msa0794230:intron 35.0%
TTCCATCAGCAACCTAAAAT+AGG + chr5_3:6090499-6090518 None:intergenic 35.0%
CTATGTCCTTGCCTATTTAT+TGG - chr5_3:6091017-6091036 Msa0794230:intron 35.0%
TTGTCTCCAATAAATAGGCA+AGG + chr5_3:6091026-6091045 None:intergenic 35.0%
CAACACATAAAAAGGAACAG+AGG - chr5_3:6091158-6091177 Msa0794230:intron 35.0%
CATTAGCAAAAGTTACAAGC+AGG + chr5_3:6091270-6091289 None:intergenic 35.0%
!!! AGTGGCTCTTTTTTCGAAAA+TGG + chr5_3:6091389-6091408 None:intergenic 35.0%
!!! ATGTCAGTTTTAAGCAGGAA+AGG - chr5_3:6091457-6091476 Msa0794230:intron 35.0%
ACGGAAGAAAATGAAAGTGA+TGG - chr5_3:6091594-6091613 Msa0794230:intron 35.0%
AGCATCACTGAAAATCTCAT+CGG + chr5_3:6091779-6091798 None:intergenic 35.0%
GGAATATAGTCAATTATCCC+TGG - chr5_3:6091804-6091823 Msa0794230:intron 35.0%
!!! TTCCATTCTTGTTTTGACCA+GGG + chr5_3:6091824-6091843 None:intergenic 35.0%
AGGAGTTCCAATCTTACATA+CGG + chr5_3:6091919-6091938 None:intergenic 35.0%
AATCTAAACCCTTGTGAAGT+GGG + chr5_3:6091951-6091970 None:intergenic 35.0%
AAATCTAAACCCTTGTGAAG+TGG + chr5_3:6091952-6091971 None:intergenic 35.0%
!! AATCTTTTTAGGGGAGTTCT+TGG - chr5_3:6092031-6092050 Msa0794230:intron 35.0%
CTCTACCATAAATTCAAGGA+AGG + chr5_3:6092112-6092131 None:intergenic 35.0%
ACAAAATCCTTTCCATCTTC+AGG + chr5_3:6092204-6092223 None:intergenic 35.0%
! CAACCTTTTCCACCAAATTT+GGG + chr5_3:6092260-6092279 None:intergenic 35.0%
AGCAATGGGAAACTTCATAA+TGG + chr5_3:6092296-6092315 None:intergenic 35.0%
ATTATGAAGTTTCCCATTGC+TGG - chr5_3:6092295-6092314 Msa0794230:intron 35.0%
TTATGAAGTTTCCCATTGCT+GGG - chr5_3:6092296-6092315 Msa0794230:intron 35.0%
TGATGCTGTTGCTAAACTTA+CGG - chr5_3:6092440-6092459 Msa0794230:intron 35.0%
GAGAAATATTTGCCTTTGGA+AGG - chr5_3:6092731-6092750 Msa0794230:intron 35.0%
TTGCAAATATGTCCTTCCAA+AGG + chr5_3:6092746-6092765 None:intergenic 35.0%
!! TCTGATATGCTTCTAAAGTG+AGG + chr5_3:6092822-6092841 None:intergenic 35.0%
!! CGGATTATTGATTCCCTATA+TGG - chr5_3:6092873-6092892 Msa0794230:intron 35.0%
! AGTTTTTGTGAAATTGGTGG+TGG - chr5_3:6092955-6092974 Msa0794230:intron 35.0%
GAATACCAGAAATAACTTGG+GGG - chr5_3:6093051-6093070 Msa0794230:intron 35.0%
TGGCATGATCATATTCATTG+AGG + chr5_3:6093457-6093476 None:intergenic 35.0%
TCAATGAATATGATCATGCC+AGG - chr5_3:6093456-6093475 Msa0794230:CDS 35.0%
AACATAGTCTCTTGGTATGT+TGG - chr5_3:6093542-6093561 Msa0794230:CDS 35.0%
ACATAGTCTCTTGGTATGTT+GGG - chr5_3:6093543-6093562 Msa0794230:CDS 35.0%
ATACTCCTGATAAGGTCAAA+AGG + chr5_3:6093614-6093633 None:intergenic 35.0%
!! TGCTTAATTTGTCACTGCAA+CGG - chr5_3:6093715-6093734 Msa0794230:CDS 35.0%
CATATGTACCATCTCACTTT+CGG - chr5_3:6093764-6093783 Msa0794230:CDS 35.0%
ATATGTACCATCTCACTTTC+GGG - chr5_3:6093765-6093784 Msa0794230:CDS 35.0%
AGAGCAATGGAAGAAAAAAG+TGG + chr5_3:6093816-6093835 None:intergenic 35.0%
AGAACACCATTGCTACAAAT+TGG + chr5_3:6094055-6094074 None:intergenic 35.0%
!!! TTGCTGTATTTTGACTCTGT+TGG - chr5_3:6094144-6094163 Msa0794230:CDS 35.0%
GCACAGTATTTATGTTCTTG+AGG - chr5_3:6094233-6094252 Msa0794230:CDS 35.0%
CAGTATTTATGTTCTTGAGG+TGG - chr5_3:6094236-6094255 Msa0794230:CDS 35.0%
! AATTGGTAGTTCTATTGGGT+TGG + chr5_3:6094457-6094476 None:intergenic 35.0%
ACCCAATAGAACTACCAATT+AGG - chr5_3:6094457-6094476 Msa0794230:five_prime_UTR 35.0%
! CCCTAATTGGTAGTTCTATT+GGG + chr5_3:6094461-6094480 None:intergenic 35.0%
CCCAATAGAACTACCAATTA+GGG - chr5_3:6094458-6094477 Msa0794230:five_prime_UTR 35.0%
! ACCCTAATTGGTAGTTCTAT+TGG + chr5_3:6094462-6094481 None:intergenic 35.0%
CTCCAAAACATTGTAGTCTA+GGG + chr5_3:6094565-6094584 None:intergenic 35.0%
!! CTAGACTACAATGTTTTGGA+GGG - chr5_3:6094564-6094583 Msa0794230:five_prime_UTR 35.0%
!!! TTTTTAGGTTTAGGGGCAGA+GGG + chr5_3:6087322-6087341 None:intergenic 40.0%
!!! TTTTTTAGGTTTAGGGGCAG+AGG + chr5_3:6087323-6087342 None:intergenic 40.0%
!!! GGGTGGTTTTTTAGGTTTAG+GGG + chr5_3:6087329-6087348 None:intergenic 40.0%
TTGTGAGAGGAAGAAGAAGA+GGG + chr5_3:6087442-6087461 None:intergenic 40.0%
TTTGTGAGAGGAAGAAGAAG+AGG + chr5_3:6087443-6087462 None:intergenic 40.0%
AGATGAAATAGGACGAGAAG+CGG + chr5_3:6087605-6087624 None:intergenic 40.0%
! GGTTTGGGTTCAGATGAAAT+AGG + chr5_3:6087616-6087635 None:intergenic 40.0%
! ACAATAACCGGTTCAGAAGA+AGG + chr5_3:6087637-6087656 None:intergenic 40.0%
! TTTTCTTCAGAATCCGACTC+CGG + chr5_3:6087694-6087713 None:intergenic 40.0%
! GAGTCGGATTCTGAAGAAAA+CGG - chr5_3:6087694-6087713 Msa0794230:intron 40.0%
! AGTCGGATTCTGAAGAAAAC+GGG - chr5_3:6087695-6087714 Msa0794230:intron 40.0%
! AAGCGAGATTTGCTTCTGTT+GGG - chr5_3:6087725-6087744 Msa0794230:intron 40.0%
GCTTTAATATCCTCTTCACC+GGG + chr5_3:6087778-6087797 None:intergenic 40.0%
TTAAAGCAGCTAAGGCTAAG+AGG - chr5_3:6087791-6087810 Msa0794230:intron 40.0%
TAAAGCAGCTAAGGCTAAGA+GGG - chr5_3:6087792-6087811 Msa0794230:intron 40.0%
TGCACCCGATTATATTTCGT+TGG - chr5_3:6087840-6087859 Msa0794230:intron 40.0%
CCCGATTATATTTCGTTGGA+TGG - chr5_3:6087844-6087863 Msa0794230:intron 40.0%
!! TTGGATGGTGGAAGTAATCA+TGG - chr5_3:6087859-6087878 Msa0794230:intron 40.0%
!!! AGAGAAGAAGGGTGTTTTTG+AGG - chr5_3:6087960-6087979 Msa0794230:three_prime_UTR 40.0%
GAAGAAGAGCAGTGTAAGAA+AGG - chr5_3:6088045-6088064 Msa0794230:three_prime_UTR 40.0%
AGAGCAGTGTAAGAAAGGAT+TGG - chr5_3:6088050-6088069 Msa0794230:three_prime_UTR 40.0%
! AGAAAGGATTGGTGAAGAGA+AGG - chr5_3:6088061-6088080 Msa0794230:three_prime_UTR 40.0%
! GAAAGGATTGGTGAAGAGAA+GGG - chr5_3:6088062-6088081 Msa0794230:three_prime_UTR 40.0%
ATGCTGCTGCTACAACATTT+GGG + chr5_3:6088194-6088213 None:intergenic 40.0%
AAATGTTGTAGCAGCAGCAT+CGG - chr5_3:6088194-6088213 Msa0794230:CDS 40.0%
AAGCTATGCTGGACAATGTT+AGG - chr5_3:6088301-6088320 Msa0794230:intron 40.0%
CAGCCTGATACAAATGAGTT+TGG + chr5_3:6088360-6088379 None:intergenic 40.0%
! TTTGTATCAGGCTGAGCTTT+TGG - chr5_3:6088366-6088385 Msa0794230:intron 40.0%
GGATCAAATTTGCCTAGTGT+AGG - chr5_3:6088587-6088606 Msa0794230:intron 40.0%
AATTTGCCTAGTGTAGGTTG+AGG - chr5_3:6088593-6088612 Msa0794230:intron 40.0%
! ATTTGCCTAGTGTAGGTTGA+GGG - chr5_3:6088594-6088613 Msa0794230:intron 40.0%
ATGCTTGTACTGTGGCTATT+AGG - chr5_3:6088694-6088713 Msa0794230:intron 40.0%
TGCTTGTACTGTGGCTATTA+GGG - chr5_3:6088695-6088714 Msa0794230:intron 40.0%
ATCACAAACAGAGTGTGTGT+GGG + chr5_3:6088878-6088897 None:intergenic 40.0%
CAGACTGCATCATATGATAC+AGG + chr5_3:6088924-6088943 None:intergenic 40.0%
CACACAAAACAACCGTCAAT+AGG - chr5_3:6089197-6089216 Msa0794230:intron 40.0%
! AAGTCTTATCCCACTAAGTG+GGG + chr5_3:6089319-6089338 None:intergenic 40.0%
! CAAAGTCTTATCCCACTAAG+TGG + chr5_3:6089321-6089340 None:intergenic 40.0%
CACTTAGTGGGATAAGACTT+TGG - chr5_3:6089319-6089338 Msa0794230:CDS 40.0%
! TGTGATTCCTGTCATTTGTG+GGG + chr5_3:6089406-6089425 None:intergenic 40.0%
! CATGTGATTCCTGTCATTTG+TGG + chr5_3:6089408-6089427 None:intergenic 40.0%
CACAAATGACAGGAATCACA+TGG - chr5_3:6089406-6089425 Msa0794230:CDS 40.0%
AAACACTTACGAGTTTAGGC+AGG - chr5_3:6089928-6089947 Msa0794230:CDS 40.0%
!! GGTGAATTTGTTGTCCAAAG+TGG - chr5_3:6090087-6090106 Msa0794230:CDS 40.0%
ACATTCTTGCCTATGTAGGA+TGG - chr5_3:6090170-6090189 Msa0794230:CDS 40.0%
! CAACTCTTCTAGAAGTCAGT+AGG - chr5_3:6090361-6090380 Msa0794230:intron 40.0%
GTCTAAATCTCTCAAGCCAT+AGG + chr5_3:6090584-6090603 None:intergenic 40.0%
TGAGAGATTTAGACCCTGTT+TGG - chr5_3:6090590-6090609 Msa0794230:intron 40.0%
!! CCAATTTTCGAGCTTATAGC+GGG + chr5_3:6090864-6090883 None:intergenic 40.0%
!! GCCAATTTTCGAGCTTATAG+CGG + chr5_3:6090865-6090884 None:intergenic 40.0%
TTTCAGCTCCTAAGACTGTT+TGG + chr5_3:6090892-6090911 None:intergenic 40.0%
ACATAGAAAGGAATGAGGAG+AGG + chr5_3:6090933-6090952 None:intergenic 40.0%
GCAACACATAGAAAGGAATG+AGG + chr5_3:6090938-6090957 None:intergenic 40.0%
CATTTCGTCGTCATTGTTAG+TGG + chr5_3:6091407-6091426 None:intergenic 40.0%
CACTAACAATGACGACGAAA+TGG - chr5_3:6091405-6091424 Msa0794230:intron 40.0%
!!! CTGCAATGTCAGTTTTAAGC+AGG - chr5_3:6091452-6091471 Msa0794230:intron 40.0%
GAAAATGAAAGTGATGGCTG+AGG - chr5_3:6091600-6091619 Msa0794230:intron 40.0%
! TTCTAAAAAGTCGGCATCCA+TGG - chr5_3:6091654-6091673 Msa0794230:intron 40.0%
ATATCAGTCACAGCGAGATT+TGG - chr5_3:6091741-6091760 Msa0794230:intron 40.0%
! GATTTTCAGTGATGCTTCTG+AGG - chr5_3:6091783-6091802 Msa0794230:intron 40.0%
ATCCCTGGTCAAAACAAGAA+TGG - chr5_3:6091819-6091838 Msa0794230:intron 40.0%
!!! CTTCCATTCTTGTTTTGACC+AGG + chr5_3:6091825-6091844 None:intergenic 40.0%
CTTCTCTCCGTATGTAAGAT+TGG - chr5_3:6091909-6091928 Msa0794230:intron 40.0%
ATGTAAGATTGGAACTCCTG+AGG - chr5_3:6091920-6091939 Msa0794230:intron 40.0%
CCACATGAAGTGTAATGAAG+TGG + chr5_3:6092079-6092098 None:intergenic 40.0%
CCACTTCATTACACTTCATG+TGG - chr5_3:6092076-6092095 Msa0794230:CDS 40.0%
! ACTTATGGATTGCCTGAAGA+TGG - chr5_3:6092189-6092208 Msa0794230:CDS 40.0%
! TGTCCCAAATTTGGTGGAAA+AGG - chr5_3:6092254-6092273 Msa0794230:intron 40.0%
! GCAACCTTTTCCACCAAATT+TGG + chr5_3:6092261-6092280 None:intergenic 40.0%
CTGTTGCTAAACTTACGGTA+TGG - chr5_3:6092445-6092464 Msa0794230:intron 40.0%
TCCATCTTGTCTTGTGTTGT+AGG - chr5_3:6092620-6092639 Msa0794230:intron 40.0%
ACCTACAACACAAGACAAGA+TGG + chr5_3:6092624-6092643 None:intergenic 40.0%
TTGATTCCCTATATGGCGTT+TGG - chr5_3:6092880-6092899 Msa0794230:intron 40.0%
TGATTCCCTATATGGCGTTT+GGG - chr5_3:6092881-6092900 Msa0794230:intron 40.0%
! TTTTGTCTCCAGTGACACTT+GGG + chr5_3:6092911-6092930 None:intergenic 40.0%
! TTTTTGTCTCCAGTGACACT+TGG + chr5_3:6092912-6092931 None:intergenic 40.0%
! ATTAGCCCCCAAGTTATTTC+TGG + chr5_3:6093059-6093078 None:intergenic 40.0%
AGAAATAACTTGGGGGCTAA+TGG - chr5_3:6093058-6093077 Msa0794230:intron 40.0%
GAAATAACTTGGGGGCTAAT+GGG - chr5_3:6093059-6093078 Msa0794230:intron 40.0%
AAATAACTTGGGGGCTAATG+GGG - chr5_3:6093060-6093079 Msa0794230:intron 40.0%
GGCTGCAACAAAAATAGAGA+AGG + chr5_3:6093325-6093344 None:intergenic 40.0%
TCTGGAGAGAAGAAATGTAC+AGG - chr5_3:6093391-6093410 Msa0794230:CDS 40.0%
!! CAAGGAGGCATTATGAGTTT+AGG - chr5_3:6093502-6093521 Msa0794230:CDS 40.0%
CATAGTCTCTTGGTATGTTG+GGG - chr5_3:6093544-6093563 Msa0794230:CDS 40.0%
! TCTGAAGTACTCACTTGAGA+AGG + chr5_3:6093588-6093607 None:intergenic 40.0%
! GATAGCCTTTTGACCTTATC+AGG - chr5_3:6093606-6093625 Msa0794230:CDS 40.0%
!! GCTTAATTTGTCACTGCAAC+GGG - chr5_3:6093716-6093735 Msa0794230:CDS 40.0%
TATGTACCATCTCACTTTCG+GGG - chr5_3:6093766-6093785 Msa0794230:CDS 40.0%
GTTCGAGTGGAGTTTATTTC+CGG - chr5_3:6093960-6093979 Msa0794230:CDS 40.0%
TTTCGAAGCCTTAAGCTTGA+AGG - chr5_3:6094095-6094114 Msa0794230:CDS 40.0%
ATGTGATATGTAGCCCAGTT+TGG - chr5_3:6094209-6094228 Msa0794230:CDS 40.0%
TAAATACTGTGCGCCAAACT+GGG + chr5_3:6094225-6094244 None:intergenic 40.0%
ATAAATACTGTGCGCCAAAC+TGG + chr5_3:6094226-6094245 None:intergenic 40.0%
ATTTATGTTCTTGAGGTGGC+TGG - chr5_3:6094240-6094259 Msa0794230:CDS 40.0%
TTTATGTTCTTGAGGTGGCT+GGG - chr5_3:6094241-6094260 Msa0794230:CDS 40.0%
! GTGATGAAATTCGGAGCATT+TGG - chr5_3:6094310-6094329 Msa0794230:CDS 40.0%
AGAACTACCAATTAGGGTTG+AGG - chr5_3:6094464-6094483 Msa0794230:five_prime_UTR 40.0%
GAACTACCAATTAGGGTTGA+GGG - chr5_3:6094465-6094484 Msa0794230:five_prime_UTR 40.0%
! GTCCCTAGACTACAATGTTT+TGG - chr5_3:6094560-6094579 Msa0794230:five_prime_UTR 40.0%
CCTCCAAAACATTGTAGTCT+AGG + chr5_3:6094566-6094585 None:intergenic 40.0%
!! CCTAGACTACAATGTTTTGG+AGG - chr5_3:6094563-6094582 Msa0794230:five_prime_UTR 40.0%
AGGAAGAAGAAGAGGGTTTG+GGG + chr5_3:6087435-6087454 None:intergenic 45.0%
GAGGAAGAAGAAGAGGGTTT+GGG + chr5_3:6087436-6087455 None:intergenic 45.0%
AGAGGAAGAAGAAGAGGGTT+TGG + chr5_3:6087437-6087456 None:intergenic 45.0%
! GTGAGTGGTGATTTTGTGAG+AGG + chr5_3:6087455-6087474 None:intergenic 45.0%
ACATTGGAAGGTGAAGGTGA+AGG + chr5_3:6087502-6087521 None:intergenic 45.0%
GGTTGAACATTGGAAGGTGA+AGG + chr5_3:6087508-6087527 None:intergenic 45.0%
GCTTGAGGTTGAACATTGGA+AGG + chr5_3:6087514-6087533 None:intergenic 45.0%
TCCAATGTTCAACCTCAAGC+TGG - chr5_3:6087514-6087533 Msa0794230:intron 45.0%
ACCAGCTTGAGGTTGAACAT+TGG + chr5_3:6087518-6087537 None:intergenic 45.0%
!! ACGAAGTGCTTCTAAGGTGT+AGG + chr5_3:6087542-6087561 None:intergenic 45.0%
! AAGCTCACGAAGTGCTTCTA+AGG + chr5_3:6087548-6087567 None:intergenic 45.0%
ACCCAAACCTTCTTCTGAAC+CGG - chr5_3:6087627-6087646 Msa0794230:intron 45.0%
! ACCGGTTCAGAAGAAGGTTT+GGG + chr5_3:6087631-6087650 None:intergenic 45.0%
! AACCGGTTCAGAAGAAGGTT+TGG + chr5_3:6087632-6087651 None:intergenic 45.0%
! GTCGGATTCTGAAGAAAACG+GGG - chr5_3:6087696-6087715 Msa0794230:intron 45.0%
! GAAGCGAGATTTGCTTCTGT+TGG - chr5_3:6087724-6087743 Msa0794230:intron 45.0%
!!! TTCGTTTTTTCCCGGTGAAG+AGG - chr5_3:6087765-6087784 Msa0794230:intron 45.0%
TCCCACCAAACATTGCAATC+CGG + chr5_3:6087927-6087946 None:intergenic 45.0%
! TGCAATGTTTGGTGGGAAGA+AGG - chr5_3:6087930-6087949 Msa0794230:three_prime_UTR 45.0%
! GCAATGTTTGGTGGGAAGAA+GGG - chr5_3:6087931-6087950 Msa0794230:three_prime_UTR 45.0%
AAGGGAGATGGAGAGAAGAA+GGG - chr5_3:6087949-6087968 Msa0794230:three_prime_UTR 45.0%
!!! GAAGGGTGTTTTTGAGGTTG+CGG - chr5_3:6087966-6087985 Msa0794230:three_prime_UTR 45.0%
!!! TTTTTGAGGTTGCGGATGAG+AGG - chr5_3:6087974-6087993 Msa0794230:three_prime_UTR 45.0%
TTGGTGAAGAGAAGGGATGA+AGG - chr5_3:6088069-6088088 Msa0794230:three_prime_UTR 45.0%
TGGTGAAGAGAAGGGATGAA+GGG - chr5_3:6088070-6088089 Msa0794230:three_prime_UTR 45.0%
TGTTGAGCAACTTGCACAAC+AGG + chr5_3:6088126-6088145 None:intergenic 45.0%
! GCTCAACAGCCCAATTTTGT+TGG - chr5_3:6088138-6088157 Msa0794230:exon 45.0%
CCATACACGTTTGCAACAGA+TGG + chr5_3:6088165-6088184 None:intergenic 45.0%
CCATCTGTTGCAAACGTGTA+TGG - chr5_3:6088162-6088181 Msa0794230:CDS 45.0%
GATGCTGCTGCTACAACATT+TGG + chr5_3:6088195-6088214 None:intergenic 45.0%
!!! AATCCCAGCAACACCGATTT+TGG - chr5_3:6088239-6088258 Msa0794230:CDS 45.0%
!! CATCCAAAATCGGTGTTGCT+GGG + chr5_3:6088245-6088264 None:intergenic 45.0%
!! ACATCCAAAATCGGTGTTGC+TGG + chr5_3:6088246-6088265 None:intergenic 45.0%
CTATGCTGGACAATGTTAGG+AGG - chr5_3:6088304-6088323 Msa0794230:intron 45.0%
GGACAATGTTAGGAGGCTTA+AGG - chr5_3:6088311-6088330 Msa0794230:intron 45.0%
! TTTGCCTAGTGTAGGTTGAG+GGG - chr5_3:6088595-6088614 Msa0794230:intron 45.0%
TTGCTGTCATGCTTGTACTG+TGG - chr5_3:6088686-6088705 Msa0794230:intron 45.0%
! CTGTGGCTATTAGGGTTAGT+TGG - chr5_3:6088703-6088722 Msa0794230:intron 45.0%
!! GCTATTAGGGTTAGTTGGCT+GGG - chr5_3:6088708-6088727 Msa0794230:intron 45.0%
GTCGATGTGCTTTGCAATCA+AGG - chr5_3:6088741-6088760 Msa0794230:CDS 45.0%
GATCACAAACAGAGTGTGTG+TGG + chr5_3:6088879-6088898 None:intergenic 45.0%
!! ATTTTACAACCCTCTGGCTC+TGG + chr5_3:6089002-6089021 None:intergenic 45.0%
! GTGATTCCTGTCATTTGTGG+GGG + chr5_3:6089405-6089424 None:intergenic 45.0%
!! ATGGTAGTGGAAAGGCTTTG+TGG - chr5_3:6089778-6089797 Msa0794230:CDS 45.0%
ACTTACGAGTTTAGGCAGGT+AGG - chr5_3:6089932-6089951 Msa0794230:CDS 45.0%
CATACATGTCCCTACCACTT+TGG + chr5_3:6090104-6090123 None:intergenic 45.0%
AGTGATAAGCTCTGCTGTCA+AGG + chr5_3:6090236-6090255 None:intergenic 45.0%
! ATAGTGGAGATGAAGAGGAC+AGG + chr5_3:6090264-6090283 None:intergenic 45.0%
TAATTCCCTTGCTGGACCTA+TGG - chr5_3:6090565-6090584 Msa0794230:intron 45.0%
CCCGCTATAAGCTCGAAAAT+TGG - chr5_3:6090861-6090880 Msa0794230:intron 45.0%
CAATGACGACGAAATGGTTG+AGG - chr5_3:6091411-6091430 Msa0794230:intron 45.0%
CCAAACTCATCTAACTGCAC+TGG + chr5_3:6091553-6091572 None:intergenic 45.0%
CCAGTGCAGTTAGATGAGTT+TGG - chr5_3:6091550-6091569 Msa0794230:intron 45.0%
GAAGATCAGTGGAAGACTCA+CGG + chr5_3:6091893-6091912 None:intergenic 45.0%
ACATACGGAGAGAAGATCAG+TGG + chr5_3:6091904-6091923 None:intergenic 45.0%
TAAGATTGGAACTCCTGAGG+TGG - chr5_3:6091923-6091942 Msa0794230:intron 45.0%
AAGATTGGAACTCCTGAGGT+GGG - chr5_3:6091924-6091943 Msa0794230:intron 45.0%
TGGATTGCCTGAAGATGGAA+AGG - chr5_3:6092194-6092213 Msa0794230:CDS 45.0%
! CCAAATTTGGGACAAGCTCA+AGG + chr5_3:6092248-6092267 None:intergenic 45.0%
CCTTGAGCTTGTCCCAAATT+TGG - chr5_3:6092245-6092264 Msa0794230:intron 45.0%
TGAGCTTGTCCCAAATTTGG+TGG - chr5_3:6092248-6092267 Msa0794230:intron 45.0%
ACTAAGCATGTCCCAGCAAT+GGG + chr5_3:6092310-6092329 None:intergenic 45.0%
CGAAACTAGCAGATCTGCAA+GGG + chr5_3:6092403-6092422 None:intergenic 45.0%
TCGAAACTAGCAGATCTGCA+AGG + chr5_3:6092404-6092423 None:intergenic 45.0%
TTGTGTTGTAGGTCCCTACA+TGG - chr5_3:6092631-6092650 Msa0794230:intron 45.0%
!! GTACTAGTGGACTCCATGTA+GGG + chr5_3:6092647-6092666 None:intergenic 45.0%
!! AGTACTAGTGGACTCCATGT+AGG + chr5_3:6092648-6092667 None:intergenic 45.0%
ATGGGGTGGGATATTCGTTA+AGG - chr5_3:6093077-6093096 Msa0794230:intron 45.0%
TGGGGTGGGATATTCGTTAA+GGG - chr5_3:6093078-6093097 Msa0794230:intron 45.0%
GGGATTAGAGTAGAGGTTGT+AGG - chr5_3:6093129-6093148 Msa0794230:intron 45.0%
! GCTGTCACTTGGAAAGATTC+TGG - chr5_3:6093373-6093392 Msa0794230:CDS 45.0%
ATATGATCATGCCAGGACCA+TGG - chr5_3:6093463-6093482 Msa0794230:CDS 45.0%
TAATGCCTCCTTGAGATGGA+AGG + chr5_3:6093495-6093514 None:intergenic 45.0%
CTCATAATGCCTCCTTGAGA+TGG + chr5_3:6093499-6093518 None:intergenic 45.0%
TCTTGGTATGTTGGGGAGTT+CGG - chr5_3:6093551-6093570 Msa0794230:CDS 45.0%
! TCATACACAAAGCCGACTCT+GGG + chr5_3:6093657-6093676 None:intergenic 45.0%
! TTCATACACAAAGCCGACTC+TGG + chr5_3:6093658-6093677 None:intergenic 45.0%
! GGCTTTGTGTATGAACTTGC+TGG - chr5_3:6093663-6093682 Msa0794230:CDS 45.0%
AGGGATCACAGTTAGAGCAA+TGG + chr5_3:6093829-6093848 None:intergenic 45.0%
AAGCCTTAAGCTTGAAGGCA+GGG - chr5_3:6094100-6094119 Msa0794230:CDS 45.0%
TAACCCTGCCTTCAAGCTTA+AGG + chr5_3:6094106-6094125 None:intergenic 45.0%
! ATCACATTCTTGCTGTCTGC+AGG + chr5_3:6094196-6094215 None:intergenic 45.0%
! AATTCGGAGCATTTGGTACG+AGG - chr5_3:6094317-6094336 Msa0794230:CDS 45.0%
TACCAATTAGGGTTGAGGGA+TGG - chr5_3:6094469-6094488 Msa0794230:five_prime_UTR 45.0%
TTCCATCCCTCAACCCTAAT+TGG + chr5_3:6094474-6094493 None:intergenic 45.0%
AATTAGGGTTGAGGGATGGA+AGG - chr5_3:6094473-6094492 Msa0794230:five_prime_UTR 45.0%
AAACGCACCAAACACACACG+AGG - chr5_3:6087084-6087103 Msa0794230:three_prime_UTR 50.0%
AACGCACCAAACACACACGA+GGG - chr5_3:6087085-6087104 Msa0794230:three_prime_UTR 50.0%
TCGTTTCCCTCGTGTGTGTT+TGG + chr5_3:6087094-6087113 None:intergenic 50.0%
ACACACACGAGGGAAACGAA+AGG - chr5_3:6087095-6087114 Msa0794230:three_prime_UTR 50.0%
CACACACGAGGGAAACGAAA+GGG - chr5_3:6087096-6087115 Msa0794230:three_prime_UTR 50.0%
ACACACGAGGGAAACGAAAG+GGG - chr5_3:6087097-6087116 Msa0794230:three_prime_UTR 50.0%
ACGGAAATTGCGGGATTTGG+CGG + chr5_3:6087245-6087264 None:intergenic 50.0%
TCGGCGAAGCTGAGAAGTTT+GGG + chr5_3:6087349-6087368 None:intergenic 50.0%
TGGACGAGGGGTTTCGTTAT+CGG + chr5_3:6087386-6087405 None:intergenic 50.0%
AAGAAGAAGAGGGTTTGGGG+CGG + chr5_3:6087432-6087451 None:intergenic 50.0%
AAGGTGTAGGTACCAGCTTG+AGG + chr5_3:6087529-6087548 None:intergenic 50.0%
AGCGGTTGTAGGAGTGACTA+GGG + chr5_3:6087587-6087606 None:intergenic 50.0%
AAGCGGTTGTAGGAGTGACT+AGG + chr5_3:6087588-6087607 None:intergenic 50.0%
ATAGGACGAGAAGCGGTTGT+AGG + chr5_3:6087598-6087617 None:intergenic 50.0%
TAAACCGGTGACGTCTGAAC+CGG - chr5_3:6087672-6087691 Msa0794230:intron 50.0%
TGGAAGTAATCATGGCGCTG+CGG - chr5_3:6087867-6087886 Msa0794230:intron 50.0%
AGAGGCCGGATTGCAATGTT+TGG - chr5_3:6087919-6087938 Msa0794230:intron 50.0%
GCCGGATTGCAATGTTTGGT+GGG - chr5_3:6087923-6087942 Msa0794230:intron 50.0%
TTTGGTGGGAAGAAGGGAGA+TGG - chr5_3:6087937-6087956 Msa0794230:three_prime_UTR 50.0%
GAAGGGAGATGGAGAGAAGA+AGG - chr5_3:6087948-6087967 Msa0794230:three_prime_UTR 50.0%
GGATGAGAGGTTTGTCGATG+TGG - chr5_3:6087987-6088006 Msa0794230:three_prime_UTR 50.0%
TGAGAGGTTTGTCGATGTGG+TGG - chr5_3:6087990-6088009 Msa0794230:three_prime_UTR 50.0%
! TGTCGATGTGGTGGTTGATG+AGG - chr5_3:6087999-6088018 Msa0794230:three_prime_UTR 50.0%
AGGATGAGGAGGAAGGATTG+TGG - chr5_3:6088022-6088041 Msa0794230:three_prime_UTR 50.0%
GGATGAGGAGGAAGGATTGT+GGG - chr5_3:6088023-6088042 Msa0794230:three_prime_UTR 50.0%
AAGGGATGAAGGGTCTGCTA+GGG - chr5_3:6088080-6088099 Msa0794230:three_prime_UTR 50.0%
CATCGGCGAATACCAGCATT+GGG - chr5_3:6088211-6088230 Msa0794230:CDS 50.0%
ATCGGCGAATACCAGCATTG+GGG - chr5_3:6088212-6088231 Msa0794230:CDS 50.0%
AGAACCCCTCAACCTACACT+AGG + chr5_3:6088602-6088621 None:intergenic 50.0%
! TAGTGTAGGTTGAGGGGTTC+TGG - chr5_3:6088601-6088620 Msa0794230:intron 50.0%
!! GGCTATTAGGGTTAGTTGGC+TGG - chr5_3:6088707-6088726 Msa0794230:intron 50.0%
!! TTAGGGTTAGTTGGCTGGGA+TGG - chr5_3:6088712-6088731 Msa0794230:intron 50.0%
CCATTGCAACTCAGATGCTG+CGG - chr5_3:6088794-6088813 Msa0794230:CDS 50.0%
TGTTTGTGATCCAGAGCCAG+AGG - chr5_3:6088888-6088907 Msa0794230:CDS 50.0%
GTTTGTGATCCAGAGCCAGA+GGG - chr5_3:6088889-6088908 Msa0794230:CDS 50.0%
TACAGGCGTTTACAACCCTC+TGG + chr5_3:6088907-6088926 None:intergenic 50.0%
ACTAAGTGGGGTCAGCTACA+TGG + chr5_3:6089307-6089326 None:intergenic 50.0%
ATGTAGCTGACCCCACTTAG+TGG - chr5_3:6089306-6089325 Msa0794230:CDS 50.0%
TGTAGCTGACCCCACTTAGT+GGG - chr5_3:6089307-6089326 Msa0794230:CDS 50.0%
TTGTGTCCCCCACAAATGAC+AGG - chr5_3:6089396-6089415 Msa0794230:CDS 50.0%
TCAAGCCATAGGTCCAGCAA+GGG + chr5_3:6090573-6090592 None:intergenic 50.0%
! TGGCCTTGCCAAACAGTCTT+AGG - chr5_3:6090881-6090900 Msa0794230:intron 50.0%
GCTCCTAAGACTGTTTGGCA+AGG + chr5_3:6090887-6090906 None:intergenic 50.0%
AAGCAGGAAAGGTGACAACG+TGG - chr5_3:6091468-6091487 Msa0794230:intron 50.0%
! TGAGAGTGATAGTGAGAGCC+AGG - chr5_3:6091717-6091736 Msa0794230:intron 50.0%
TAGGGGAGTTCTTGGCTTAC+TGG - chr5_3:6092039-6092058 Msa0794230:intron 50.0%
GACTAAGCATGTCCCAGCAA+TGG + chr5_3:6092311-6092330 None:intergenic 50.0%
GGAACAGCAGCTAGTACTAG+TGG + chr5_3:6092660-6092679 None:intergenic 50.0%
! GCTGCAATTTTTGCAGCGTC+TGG + chr5_3:6092681-6092700 None:intergenic 50.0%
GGTTAGGGGGATTAGAGTAG+AGG - chr5_3:6093122-6093141 Msa0794230:intron 50.0%
CCACCAGAGGTTGCAATTTG+CGG + chr5_3:6093346-6093365 None:intergenic 50.0%
GTGGCTTATGTGCTGTCACT+TGG - chr5_3:6093362-6093381 Msa0794230:CDS 50.0%
CTCCTTGAGATGGAAGGTTC+TGG + chr5_3:6093489-6093508 None:intergenic 50.0%
CAGAACCTTCCATCTCAAGG+AGG - chr5_3:6093487-6093506 Msa0794230:CDS 50.0%
CACTTGAGAAGGCTAACCCT+GGG + chr5_3:6093577-6093596 None:intergenic 50.0%
TCACTTGAGAAGGCTAACCC+TGG + chr5_3:6093578-6093597 None:intergenic 50.0%
GCATCTTTCACTCCCAGAGT+CGG - chr5_3:6093642-6093661 Msa0794230:CDS 50.0%
GAAGCCTTAAGCTTGAAGGC+AGG - chr5_3:6094099-6094118 Msa0794230:CDS 50.0%
GCTTGAAGGCAGGGTTAGAA+AGG - chr5_3:6094109-6094128 Msa0794230:CDS 50.0%
! TGCCTGCAAGGATTTGAAGC+TGG - chr5_3:6094267-6094286 Msa0794230:CDS 50.0%
AGCCAGCTTCAAATCCTTGC+AGG + chr5_3:6094272-6094291 None:intergenic 50.0%
GGCGGTGGTGAAAGGTTGTT+TGG + chr5_3:6087215-6087234 None:intergenic 55.0%
GAAATTGCGGGATTTGGCGG+AGG + chr5_3:6087242-6087261 None:intergenic 55.0%
GCGACGGAAATTGCGGGATT+TGG + chr5_3:6087248-6087267 None:intergenic 55.0%
!! AGTTAGTGTCGGTACGGCGA+CGG + chr5_3:6087264-6087283 None:intergenic 55.0%
!! CGTCGGAGTTAGTGTCGGTA+CGG + chr5_3:6087270-6087289 None:intergenic 55.0%
GTCGTCGTCGGAGTTAGTGT+CGG + chr5_3:6087275-6087294 None:intergenic 55.0%
TTTGGAAGGGACGGTGGTTG+GGG + chr5_3:6087299-6087318 None:intergenic 55.0%
GTTTGGAAGGGACGGTGGTT+GGG + chr5_3:6087300-6087319 None:intergenic 55.0%
TAGGGGCAGAGGGTTTGGAA+GGG + chr5_3:6087312-6087331 None:intergenic 55.0%
TTAGGGGCAGAGGGTTTGGA+AGG + chr5_3:6087313-6087332 None:intergenic 55.0%
AGGTTTAGGGGCAGAGGGTT+TGG + chr5_3:6087317-6087336 None:intergenic 55.0%
GCGAAGCTGAGAAGTTTGGG+TGG + chr5_3:6087346-6087365 None:intergenic 55.0%
GTCGGCGAAGCTGAGAAGTT+TGG + chr5_3:6087350-6087369 None:intergenic 55.0%
!! ATCGGCGTCGATTTCGTCGT+CGG + chr5_3:6087368-6087387 None:intergenic 55.0%
CAGCTAAGGCTAAGAGGGAG+AGG - chr5_3:6087797-6087816 Msa0794230:intron 55.0%
AGGCTAAGAGGGAGAGGATG+CGG - chr5_3:6087803-6087822 Msa0794230:intron 55.0%
TAAGAGGGAGAGGATGCGGA+AGG - chr5_3:6087807-6087826 Msa0794230:intron 55.0%
ATAATCGGGTGCAGCAGCAC+CGG + chr5_3:6087833-6087852 None:intergenic 55.0%
AAGTAATCATGGCGCTGCGG+AGG - chr5_3:6087870-6087889 Msa0794230:intron 55.0%
AGTAATCATGGCGCTGCGGA+GGG - chr5_3:6087871-6087890 Msa0794230:intron 55.0%
GACGAGGAACCGGAGTATAG+AGG - chr5_3:6087901-6087920 Msa0794230:intron 55.0%
AGGAACCGGAGTATAGAGGC+CGG - chr5_3:6087905-6087924 Msa0794230:intron 55.0%
GCAATCCGGCCTCTATACTC+CGG + chr5_3:6087913-6087932 None:intergenic 55.0%
GGCCGGATTGCAATGTTTGG+TGG - chr5_3:6087922-6087941 Msa0794230:intron 55.0%
!! CGATGTGGTGGTTGATGAGG+AGG - chr5_3:6088002-6088021 Msa0794230:three_prime_UTR 55.0%
!! GGTGGTTGATGAGGAGGATG+AGG - chr5_3:6088008-6088027 Msa0794230:three_prime_UTR 55.0%
!! GGTTGATGAGGAGGATGAGG+AGG - chr5_3:6088011-6088030 Msa0794230:three_prime_UTR 55.0%
GATGAGGAGGATGAGGAGGA+AGG - chr5_3:6088015-6088034 Msa0794230:three_prime_UTR 55.0%
GAAGGGATGAAGGGTCTGCT+AGG - chr5_3:6088079-6088098 Msa0794230:three_prime_UTR 55.0%
GATGAAGGGTCTGCTAGGGT+GGG - chr5_3:6088084-6088103 Msa0794230:three_prime_UTR 55.0%
! GCATCGGCGAATACCAGCAT+TGG - chr5_3:6088210-6088229 Msa0794230:CDS 55.0%
! TCGGCGAATACCAGCATTGG+GGG - chr5_3:6088213-6088232 Msa0794230:CDS 55.0%
! GGTTGAGGGGTTCTGGCAAT+TGG - chr5_3:6088608-6088627 Msa0794230:intron 55.0%
CCGCAGCATCTGAGTTGCAA+TGG + chr5_3:6088797-6088816 None:intergenic 55.0%
! CGTTTACAACCCTCTGGCTC+TGG + chr5_3:6088901-6088920 None:intergenic 55.0%
! CTGGATCACAGAGAGTGCGT+GGG + chr5_3:6088983-6089002 None:intergenic 55.0%
! TCTGGATCACAGAGAGTGCG+TGG + chr5_3:6088984-6089003 None:intergenic 55.0%
TCTCTGTGATCCAGAGCCAG+AGG - chr5_3:6088989-6089008 Msa0794230:CDS 55.0%
CTCTGTGATCCAGAGCCAGA+GGG - chr5_3:6088990-6089009 Msa0794230:CDS 55.0%
CTCAAGCCATAGGTCCAGCA+AGG + chr5_3:6090574-6090593 None:intergenic 55.0%
CAGGAAAGGTGACAACGTGG+AGG - chr5_3:6091471-6091490 Msa0794230:intron 55.0%
TGCATCCTGAGCTGCACTTC+TGG + chr5_3:6091500-6091519 None:intergenic 55.0%
CTCGCTGTGACTGATATGCC+TGG + chr5_3:6091738-6091757 None:intergenic 55.0%
!! ACAGCGAGATTTGGTGCTGC+AGG - chr5_3:6091750-6091769 Msa0794230:intron 55.0%
AGGTGGGACCCACTTCACAA+GGG - chr5_3:6091940-6091959 Msa0794230:intron 55.0%
TCCCTATATGGCGTTTGGGC+TGG - chr5_3:6092885-6092904 Msa0794230:intron 55.0%
GCCAGCCCAAACGCCATATA+GGG + chr5_3:6092889-6092908 None:intergenic 55.0%
TAACTTGGGGGCTAATGGGG+TGG - chr5_3:6093063-6093082 Msa0794230:intron 55.0%
AACTTGGGGGCTAATGGGGT+GGG - chr5_3:6093064-6093083 Msa0794230:intron 55.0%
GGCCTACTTGACACCTCCAT+CGG - chr5_3:6093099-6093118 Msa0794230:intron 55.0%
GCCTACTTGACACCTCCATC+GGG - chr5_3:6093100-6093119 Msa0794230:intron 55.0%
CCTACTTGACACCTCCATCG+GGG - chr5_3:6093101-6093120 Msa0794230:intron 55.0%
TTGACACCTCCATCGGGGTT+AGG - chr5_3:6093106-6093125 Msa0794230:intron 55.0%
TGACACCTCCATCGGGGTTA+GGG - chr5_3:6093107-6093126 Msa0794230:intron 55.0%
TCTAATCCCCCTAACCCCGA+TGG + chr5_3:6093118-6093137 None:intergenic 55.0%
CAGCCGCAAATTGCAACCTC+TGG - chr5_3:6093340-6093359 Msa0794230:CDS 55.0%
CCGCAAATTGCAACCTCTGG+TGG - chr5_3:6093343-6093362 Msa0794230:CDS 55.0%
GACAGCACATAAGCCACCAG+AGG + chr5_3:6093359-6093378 None:intergenic 55.0%
! GAGATGGAAGGTTCTGGCCA+TGG + chr5_3:6093483-6093502 None:intergenic 55.0%
GGCCAGAACCTTCCATCTCA+AGG - chr5_3:6093484-6093503 Msa0794230:CDS 55.0%
ACTGCACCCCGAAAGTGAGA+TGG + chr5_3:6093775-6093794 None:intergenic 55.0%
ATCTCACTTTCGGGGTGCAG+TGG - chr5_3:6093774-6093793 Msa0794230:CDS 55.0%
TCTCACTTTCGGGGTGCAGT+GGG - chr5_3:6093775-6093794 Msa0794230:CDS 55.0%
GAGGACATGGCGGTGGTGAA+AGG + chr5_3:6087223-6087242 None:intergenic 60.0%
GGATTTGGCGGAGGACATGG+CGG + chr5_3:6087233-6087252 None:intergenic 60.0%
GGTACGGCGACGGAAATTGC+GGG + chr5_3:6087254-6087273 None:intergenic 60.0%
CGGTACGGCGACGGAAATTG+CGG + chr5_3:6087255-6087274 None:intergenic 60.0%
GGTTTGGAAGGGACGGTGGT+TGG + chr5_3:6087301-6087320 None:intergenic 60.0%
AGAGGGTTTGGAAGGGACGG+TGG + chr5_3:6087305-6087324 None:intergenic 60.0%
GGCAGAGGGTTTGGAAGGGA+CGG + chr5_3:6087308-6087327 None:intergenic 60.0%
! TTTGGAGGAGCGTGGACGAG+GGG + chr5_3:6087398-6087417 None:intergenic 60.0%
! GTTTGGAGGAGCGTGGACGA+GGG + chr5_3:6087399-6087418 None:intergenic 60.0%
! AAGAAGAGGGTTTGGGGCGG+TGG + chr5_3:6087429-6087448 None:intergenic 60.0%
GACTCCGGTTCAGACGTCAC+CGG + chr5_3:6087679-6087698 None:intergenic 60.0%
GGTGACGTCTGAACCGGAGT+CGG - chr5_3:6087678-6087697 Msa0794230:intron 60.0%
GTAATCATGGCGCTGCGGAG+GGG - chr5_3:6087872-6087891 Msa0794230:intron 60.0%
GGGGTTGAGTGACGAGGAAC+CGG - chr5_3:6087891-6087910 Msa0794230:intron 60.0%
GGATGAAGGGTCTGCTAGGG+TGG - chr5_3:6088083-6088102 Msa0794230:three_prime_UTR 60.0%
TGGGATTGCTCCCCCAATGC+TGG + chr5_3:6088226-6088245 None:intergenic 60.0%
TGTGAAGTGGGTCCCACCTC+AGG + chr5_3:6091939-6091958 None:intergenic 60.0%
GAGGTGGGACCCACTTCACA+AGG - chr5_3:6091939-6091958 Msa0794230:intron 60.0%
GGCCAGCCCAAACGCCATAT+AGG + chr5_3:6092890-6092909 None:intergenic 60.0%
!! CCCCGATGGAGGTGTCAAGT+AGG + chr5_3:6093104-6093123 None:intergenic 60.0%
GACACCTCCATCGGGGTTAG+GGG - chr5_3:6093108-6093127 Msa0794230:intron 60.0%
ACACCTCCATCGGGGTTAGG+GGG - chr5_3:6093109-6093128 Msa0794230:intron 60.0%
AATCCCCCTAACCCCGATGG+AGG + chr5_3:6093115-6093134 None:intergenic 60.0%
! GAAGGTTCTGGCCATGGTCC+TGG + chr5_3:6093477-6093496 None:intergenic 60.0%
TATGTTGGGGAGTTCGGCCC+AGG - chr5_3:6093557-6093576 Msa0794230:CDS 60.0%
ATGTTGGGGAGTTCGGCCCA+GGG - chr5_3:6093558-6093577 Msa0794230:CDS 60.0%
GTGGCTGGGATTTGCCTGCA+AGG - chr5_3:6094255-6094274 Msa0794230:CDS 60.0%
TTTGGCGGAGGACATGGCGG+TGG + chr5_3:6087230-6087249 None:intergenic 65.0%
GCGGGATTTGGCGGAGGACA+TGG + chr5_3:6087236-6087255 None:intergenic 65.0%
!! GGTGGTTGGGGTGTCGTCGT+CGG + chr5_3:6087287-6087306 None:intergenic 65.0%
! GGTTTGGAGGAGCGTGGACG+AGG + chr5_3:6087400-6087419 None:intergenic 65.0%
TGGTGGGGTTTGGAGGAGCG+TGG + chr5_3:6087406-6087425 None:intergenic 65.0%
! AAGAGGGTTTGGGGCGGTGG+TGG + chr5_3:6087426-6087445 None:intergenic 65.0%
AGGGAGAGGATGCGGAAGGC+CGG - chr5_3:6087811-6087830 Msa0794230:intron 65.0%
TGCGGAGGGGTTGAGTGACG+AGG - chr5_3:6087885-6087904 Msa0794230:intron 65.0%
GAAGGGTCTGCTAGGGTGGG+TGG - chr5_3:6088087-6088106 Msa0794230:three_prime_UTR 65.0%
! TCTGCTAGGGTGGGTGGTGG+TGG - chr5_3:6088093-6088112 Msa0794230:three_prime_UTR 65.0%
! GGCTGCCAGAAGTGCAGCTC+AGG - chr5_3:6091492-6091511 Msa0794230:intron 65.0%
TGGCTGAGGCTCGTCAACGC+AGG - chr5_3:6091614-6091633 Msa0794230:intron 65.0%
CTGAGGCTCGTCAACGCAGG+AGG - chr5_3:6091617-6091636 Msa0794230:intron 65.0%
!! TGGGCTGGCCCAAGTGTCAC+TGG - chr5_3:6092900-6092919 Msa0794230:intron 65.0%
!! GCGGTGGTGGTGGGGTTTGG+AGG + chr5_3:6087413-6087432 None:intergenic 70.0%
! GGTTTGGGGCGGTGGTGGTG+GGG + chr5_3:6087421-6087440 None:intergenic 70.0%
! GGGTTTGGGGCGGTGGTGGT+GGG + chr5_3:6087422-6087441 None:intergenic 70.0%
! AGGGTTTGGGGCGGTGGTGG+TGG + chr5_3:6087423-6087442 None:intergenic 70.0%
GGGTCTGCTAGGGTGGGTGG+TGG - chr5_3:6088090-6088109 Msa0794230:three_prime_UTR 70.0%
!! GGGGCGGTGGTGGTGGGGTT+TGG + chr5_3:6087416-6087435 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 6087064 6094597 6087064 ID=Msa0794230;Name=Msa0794230
chr5_3 mRNA 6087064 6094597 6087064 ID=Msa0794230-mRNA-1;Parent=Msa0794230;Name=Msa0794230-mRNA-1;_AED=0.10;_eAED=0.10;_QI=171|1|1|1|0.83|0.71|7|636|895
chr5_3 exon 6087064 6087479 6087064 ID=Msa0794230-mRNA-1:exon:2489;Parent=Msa0794230-mRNA-1
chr5_3 exon 6087924 6088318 6087924 ID=Msa0794230-mRNA-1:exon:2488;Parent=Msa0794230-mRNA-1
chr5_3 exon 6088730 6089019 6088730 ID=Msa0794230-mRNA-1:exon:2487;Parent=Msa0794230-mRNA-1
chr5_3 exon 6089200 6089488 6089200 ID=Msa0794230-mRNA-1:exon:2486;Parent=Msa0794230-mRNA-1
chr5_3 exon 6089675 6090342 6089675 ID=Msa0794230-mRNA-1:exon:2485;Parent=Msa0794230-mRNA-1
chr5_3 exon 6092076 6092243 6092076 ID=Msa0794230-mRNA-1:exon:2484;Parent=Msa0794230-mRNA-1
chr5_3 exon 6093329 6094597 6093329 ID=Msa0794230-mRNA-1:exon:2483;Parent=Msa0794230-mRNA-1
chr5_3 five_prime_UTR 6094427 6094597 6094427 ID=Msa0794230-mRNA-1:five_prime_utr;Parent=Msa0794230-mRNA-1
chr5_3 CDS 6093329 6094426 6093329 ID=Msa0794230-mRNA-1:cds;Parent=Msa0794230-mRNA-1
chr5_3 CDS 6092076 6092243 6092076 ID=Msa0794230-mRNA-1:cds;Parent=Msa0794230-mRNA-1
chr5_3 CDS 6089675 6090342 6089675 ID=Msa0794230-mRNA-1:cds;Parent=Msa0794230-mRNA-1
chr5_3 CDS 6089200 6089488 6089200 ID=Msa0794230-mRNA-1:cds;Parent=Msa0794230-mRNA-1
chr5_3 CDS 6088730 6089019 6088730 ID=Msa0794230-mRNA-1:cds;Parent=Msa0794230-mRNA-1
chr5_3 CDS 6088144 6088318 6088144 ID=Msa0794230-mRNA-1:cds;Parent=Msa0794230-mRNA-1
chr5_3 three_prime_UTR 6087924 6088143 6087924 ID=Msa0794230-mRNA-1:three_prime_utr;Parent=Msa0794230-mRNA-1
chr5_3 three_prime_UTR 6087064 6087479 6087064 ID=Msa0794230-mRNA-1:three_prime_utr;Parent=Msa0794230-mRNA-1
Gene Sequence

>Msa0794230

ATGTCCTCCGCCAAATCCCGCAATTTCCGTCGCCGTACCGACACTAACTCCGACGACGACACCCCAACCACCGTCCCTTCCAAACCCTCTGCCCCTAAACCTAAAAAACCACCCAAACTTCTCAGCTTCGCCGACGACGAAATCGACGCCGATAACGAAACCCCTCGTCCACGCTCCTCCAAACCCCACCACCACCGCCCCAAACCCTCTTCTTCTTCCTCTCACAAAATCACCACTCACAAAAACAGAATAGTTTCACATTCTCCTTCACCTTCACCTTCCAATGTTCAACCTCAAGCTGGTACCTACACCTTAGAAGCACTTCGTGAGCTTCAGAAGAATACAAGAACCCTAGTCACTCCTACAACCGCTTCTCGTCCTATTTCATCTGAACCCAAACCTTCTTCTGAACCGGTTATTGTTTTAAAGGGTTTGCTTAAACCGGTGACGTCTGAACCGGAGTCGGATTCTGAAGAAAACGGGGAATTTGAAGCGAGATTTGCTTCTGTTGGGATTAAAAATGAGAAAGATTCGTTTTTTCCCGGTGAAGAGGATATTAAAGCAGCTAAGGCTAAGAGGGAGAGGATGCGGAAGGCCGGTGCTGCTGCACCCGATTATATTTCGTTGGATGGTGGAAGTAATCATGGCGCTGCGGAGGGGTTGAGTGACGAGGAACCGGAGTATAGAGGCCGGATTGCAATGTTTGGTGGGAAGAAGGGAGATGGAGAGAAGAAGGGTGTTTTTGAGGTTGCGGATGAGAGGTTTGTCGATGTGGTGGTTGATGAGGAGGATGAGGAGGAAGGATTGTGGGAAGAAGAGCAGTGTAAGAAAGGATTGGTGAAGAGAAGGGATGAAGGGTCTGCTAGGGTGGGTGGTGGTGGTGAAGTTCCTGTTGTGCAAGTTGCTCAACAGCCCAATTTTGTTGGTCCATCTGTTGCAAACGTGTATGGTGCAGTCCCAAATGTTGTAGCAGCAGCATCGGCGAATACCAGCATTGGGGGAGCAATCCCAGCAACACCGATTTTGGATGTCATTCCTATATCTCAACAAGCTGAGATTGCAAAAAAAGCTATGCTGGACAATGTTAGGAGGCTTAAGGAATCACATGGAAGAACAATGTCATCATTGATCAAAACAGATGAAAATTTGTCTGCCTCCCTTTTGAAGATTACTGATCTTGAAAACTCATTAGTGGTAGCTGACGAGAAGTACAGATTTATGCAAAAGCTCCGAAATTATATCTCAAATATATGCGACTTTTTACAGCATAAAGCTTACTACATTGAAGAACTTGAAGATCAGATGAAGAAGCTTCACGAAGATCGAGCATCAGCCATTTTCGAAAAAAGAGCCACTAACAATGACGACGAAATGGTTGAGGTAGAAGCAGCTGTGAAAGCTGCAATGTCAGTTTTAAGCAGGAAAGGTGACAACGTGGAGGCTGCCAGAAGTGCAGCTCAGGATGCATTTGCTGCTGTCAGAAAACAAAGAGATTTTCCAGTGCAGTTAGATGAGTTTGGTAGAGATTTAAATCTTGAGAAACGGAAGAAAATGAAAGTGATGGCTGAGGCTCGTCAACGCAGGAGGTCTAAAGCTTTTGATTCTAAAAAGTCGGCATCCATGGAAATAGATGATCATAAAGTAGAGGGTGAATCAAGCACTGATGAGAGTGATAGTGAGAGCCAGGCATATCAGTCACAGCGAGATTTGGTGCTGCAGGCTGCCGATGAGATTTTCAGTGATGCTTCTGAGGAATATAGTCAATTATCCCTGGTCAAAACAAGAATGGAAGAATGGAAAAGAGAGTATTCGTCAAGCTATAATGATGCTTATATTTCCGTGAGTCTTCCACTGATCTTCTCTCCGTATGTAAGATTGGAACTCCTGAGGTGGGACCCACTTCACAAGGGTTTAGATTTTCAAGATATGAAATGGTATAAATTGTTATTCACTTATGGATTGCCTGAAGATGGAAAGGATTTTGTTCATGATGATGAAGATGCTGACCTTGAGCTTGTCCCAAATTTGGTGGAAAAGGTTGCACTTCCTATTCTCCATTATGAAGTTTCCCATTGCTGGGACATGCTTAGTCAACAAGAGACAATGAATGCTATTGCTGCTACAAAGTTGATTGTGCAGCATGTGTCTCATAAAAGTGAAGCCCTTGCAGATCTGCTAGTTTCGATTCGTACACGTCTAGCTGATGCTGTTGCTAAACTTACGGTCCCTACATGGAGTCCACTAGTACTAGCTGCTGTTCCAGACGCTGCAAAAATTGCAGCATATCGATTTGGTGTGTCTGTTCGACTACTGAGAAATATTTGCCTTTGGAAGGACATATTTGCAATGTCAGTGTTAGAGAAGCTTGCTCTAGATGAGCTTTTGTACGCAAAAGTTCTACCTCACTTTAGAAGCATATCAGAAAATGTTCAAGATGCAATAACAAGAACAGAACGGATTATTGATTCCCTATATGGCGTTTGGGCTGGCCCAAGTGTCACTGGAGACAAAAACCGCAAATTGCAACCTCTGGTGGCTTATGTGCTGTCACTTGGAAAGATTCTGGAGAGAAGAAATGTACAGGAGAGTGATCTAGCTCGTCGATTAAAGAGAATACTTGTTGACCTCAATGAATATGATCATGCCAGGACCATGGCCAGAACCTTCCATCTCAAGGAGGCATTATGA
Protein sequence

>Msa0794230

MSSAKSRNFRRRTDTNSDDDTPTTVPSKPSAPKPKKPPKLLSFADDEIDADNETPRPRSSKPHHHRPKPSSSSSHKITTHKNRIVSHSPSPSPSNVQPQAGTYTLEALRELQKNTRTLVTPTTASRPISSEPKPSSEPVIVLKGLLKPVTSEPESDSEENGEFEARFASVGIKNEKDSFFPGEEDIKAAKAKRERMRKAGAAAPDYISLDGGSNHGAAEGLSDEEPEYRGRIAMFGGKKGDGEKKGVFEVADERFVDVVVDEEDEEEGLWEEEQCKKGLVKRRDEGSARVGGGGEVPVVQVAQQPNFVGPSVANVYGAVPNVVAAASANTSIGGAIPATPILDVIPISQQAEIAKKAMLDNVRRLKESHGRTMSSLIKTDENLSASLLKITDLENSLVVADEKYRFMQKLRNYISNICDFLQHKAYYIEELEDQMKKLHEDRASAIFEKRATNNDDEMVEVEAAVKAAMSVLSRKGDNVEAARSAAQDAFAAVRKQRDFPVQLDEFGRDLNLEKRKKMKVMAEARQRRRSKAFDSKKSASMEIDDHKVEGESSTDESDSESQAYQSQRDLVLQAADEIFSDASEEYSQLSLVKTRMEEWKREYSSSYNDAYISVSLPLIFSPYVRLELLRWDPLHKGLDFQDMKWYKLLFTYGLPEDGKDFVHDDEDADLELVPNLVEKVALPILHYEVSHCWDMLSQQETMNAIAATKLIVQHVSHKSEALADLLVSIRTRLADAVAKLTVPTWSPLVLAAVPDAAKIAAYRFGVSVRLLRNICLWKDIFAMSVLEKLALDELLYAKVLPHFRSISENVQDAITRTERIIDSLYGVWAGPSVTGDKNRKLQPLVAYVLSLGKILERRNVQESDLARRLKRILVDLNEYDHARTMARTFHLKEAL*