AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1349430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1349430 MtrunA17_Chr5g0395361 96.437 898 26 1 1 898 1 892 0.0 1767
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1349430 AT5G08550.1 51.277 940 384 24 1 898 1 908 0.0 815
Msa1349430 AT5G09210.1 51.084 323 148 4 544 861 252 569 2.60e-101 328

Find 301 sgRNAs with CRISPR-Local

Find 600 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGGTTTGGGGCGGTGGTGG+TGG 0.168409 tig0010956:-5875 Msa1349430:intergenic
TATAAATTGTTATTCACTTA+TGG 0.191596 tig0010956:+10665 Msa1349430:CDS
CCTTGAGCTTGTCCCAAATT+TGG 0.191837 tig0010956:+10736 Msa1349430:CDS
AATCCCAGCAACACCGATTT+TGG 0.195761 tig0010956:+6703 Msa1349430:CDS
TTGAATATATTGTTTATAAA+AGG 0.208388 tig0010956:+12916 Msa1349430:three_prime_UTR
CGGATTATTGATTCCCTATA+TGG 0.218970 tig0010956:+11364 Msa1349430:CDS
AACAGAAGGACCAACAAAAT+TGG 0.225072 tig0010956:-6612 Msa1349430:intergenic
ACCCTAATTGGTAGTTCTAT+TGG 0.233584 tig0010956:-12951 Msa1349430:intergenic
GGGGCGGTGGTGGTGGGGTT+TGG 0.243215 tig0010956:-5868 Msa1349430:intergenic
TGCATCCTGAGCTGCACTTC+TGG 0.255535 tig0010956:-9992 Msa1349430:intergenic
GTTTGGAAGGGACGGTGGTT+GGG 0.261718 tig0010956:-5752 Msa1349430:intergenic
ACCCAATAGAACTACCAATT+AGG 0.272272 tig0010956:+12949 Msa1349430:three_prime_UTR
TCTGCTTGGGTGGGTGGTGG+TGG 0.273612 tig0010956:+6557 Msa1349430:CDS
GGGTTTGGGGCGGTGGTGGT+GGG 0.279773 tig0010956:-5874 Msa1349430:intergenic
GCGACGGAAATTGCGGGATT+TGG 0.288173 tig0010956:-5700 Msa1349430:intergenic
TTGATTCCCTATATGGCGTT+TGG 0.291655 tig0010956:+11371 Msa1349430:CDS
CCCTAATTGGTAGTTCTATT+GGG 0.292040 tig0010956:-12950 Msa1349430:intergenic
AGAGGAAGAAGAAGAGGGTT+TGG 0.292473 tig0010956:-5889 Msa1349430:intergenic
ATAAATACTGTGCGCCAAAC+TGG 0.304474 tig0010956:-12714 Msa1349430:intergenic
GAAGGGTCTGCTTGGGTGGG+TGG 0.304490 tig0010956:+6551 Msa1349430:CDS
TTCCATCCCTCAACCCTAAT+TGG 0.305972 tig0010956:-12963 Msa1349430:intergenic
GATGCTGCTGCTACAACATT+TGG 0.312332 tig0010956:-6656 Msa1349430:intergenic
AAGAGGGTTTGGGGCGGTGG+TGG 0.313005 tig0010956:-5878 Msa1349430:intergenic
TTTGGAAGGGACGGTGGTTG+GGG 0.318020 tig0010956:-5751 Msa1349430:intergenic
AGGTTTAGGGGCGGAGGGTT+TGG 0.318804 tig0010956:-5769 Msa1349430:intergenic
TGGACGAGGGGTTTCGTTAT+CGG 0.321022 tig0010956:-5838 Msa1349430:intergenic
GGTTTGGAAGGGACGGTGGT+TGG 0.321392 tig0010956:-5753 Msa1349430:intergenic
ATTATGAAGTTTCCCATTGC+TGG 0.321705 tig0010956:+10786 Msa1349430:CDS
ACAAAATCCTTTCCATCTTC+AGG 0.326125 tig0010956:-10692 Msa1349430:intergenic
GAGGAAGAAGAAGAGGGTTT+GGG 0.326413 tig0010956:-5888 Msa1349430:intergenic
GTCCCTAGACTACAATGTTT+TGG 0.335344 tig0010956:+13052 Msa1349430:three_prime_UTR
CAAGGAGGCATTATGAGTTT+AGG 0.337617 tig0010956:+11993 Msa1349430:exon
TTCTTGAGTGTTGTTGTTGT+TGG 0.341302 tig0010956:-5587 Msa1349430:intergenic
ACATAGTCTCTTGGTATGTT+GGG 0.342780 tig0010956:+12034 Msa1349430:three_prime_UTR
ATTTATGTTCTTGAGGTGGC+TGG 0.349544 tig0010956:+12731 Msa1349430:three_prime_UTR
GGTTTGGGGCGGTGGTGGTG+GGG 0.350796 tig0010956:-5873 Msa1349430:intergenic
GCTTAATTTGTCACTGCAAC+GGG 0.353381 tig0010956:+12207 Msa1349430:three_prime_UTR
GCTGTCACTTGGAAAGATTC+TGG 0.355071 tig0010956:+11864 Msa1349430:CDS
GGGTCTGCTTGGGTGGGTGG+TGG 0.355216 tig0010956:+6554 Msa1349430:CDS
TCCCTATATGGCGTTTGGGC+TGG 0.356224 tig0010956:+11376 Msa1349430:CDS
ACATCCAAAATCGGTGTTGC+TGG 0.356702 tig0010956:-6707 Msa1349430:intergenic
AAGCTATGCTGGACAATGTT+AGG 0.360268 tig0010956:+6765 Msa1349430:CDS
TATGTTGGGGAGTTCGGCCC+AGG 0.360668 tig0010956:+12048 Msa1349430:three_prime_UTR
AAGAAGAGGGTTTGGGGCGG+TGG 0.362135 tig0010956:-5881 Msa1349430:intergenic
GGTTTGGAGGAGCGTGGACG+AGG 0.369115 tig0010956:-5852 Msa1349430:intergenic
GCGGTGGTGGTGGGGTTTGG+AGG 0.372781 tig0010956:-5865 Msa1349430:intergenic
GTCGGCGAAGCTGAGAAGTT+TGG 0.373308 tig0010956:-5802 Msa1349430:intergenic
ACCATCCAACGAAATATAAT+CGG 0.375551 tig0010956:-6300 Msa1349430:intergenic
GAAGGGAGATGGAGAGAAGA+AGG 0.376461 tig0010956:+6403 Msa1349430:CDS
GGATGAGGAGGAAGGATTGT+GGG 0.376972 tig0010956:+6487 Msa1349430:CDS
GTGATGAAATTCGGAGCATT+TGG 0.377134 tig0010956:+12801 Msa1349430:three_prime_UTR
AAGCTCACGAAGTGCTTCTA+AGG 0.378762 tig0010956:-6000 Msa1349430:intergenic
CATTTCGTCGTCATTGTTAG+TGG 0.383569 tig0010956:-9899 Msa1349430:intergenic
AACCGGTTCAGAAGAAGGTT+TGG 0.384290 tig0010956:-6084 Msa1349430:intergenic
TGATTCCCTATATGGCGTTT+GGG 0.384712 tig0010956:+11372 Msa1349430:CDS
CAAGATCAGTAATCTTCAAA+AGG 0.385604 tig0010956:-7941 Msa1349430:intergenic
TCTTGGTATGTTGGGGAGTT+CGG 0.386190 tig0010956:+12042 Msa1349430:three_prime_UTR
AACATAGTCTCTTGGTATGT+TGG 0.388105 tig0010956:+12033 Msa1349430:three_prime_UTR
CCCAATAGAACTACCAATTA+GGG 0.390000 tig0010956:+12950 Msa1349430:three_prime_UTR
AAAATTGCAGCATATCGATT+TGG 0.390099 tig0010956:+11181 Msa1349430:CDS
CCAAAACTTAAAACAGGTTA+AGG 0.391021 tig0010956:-13003 Msa1349430:intergenic
TGCAATGTTTGGTGGGAAGA+AGG 0.391451 tig0010956:+6385 Msa1349430:CDS
TCGTTTCCCTCGTGTGTGTC+TGG 0.391804 tig0010956:-5546 Msa1349430:intergenic
ATATCAGTCACAGCGAGATT+TGG 0.392471 tig0010956:+10236 Msa1349430:CDS
TGTTGAGCAACTTGCACAAC+AGG 0.392622 tig0010956:-6587 Msa1349430:intergenic
AAACCCTTTAAAACAATAAC+CGG 0.393611 tig0010956:-6101 Msa1349430:intergenic
TGTGAAGTGGGTCCCACCTC+AGG 0.397187 tig0010956:-10431 Msa1349430:intergenic
CATCGGCGAATACCAGCATT+GGG 0.397412 tig0010956:+6675 Msa1349430:CDS
TTAAAGCAGCTAAGGCTAAG+AGG 0.402087 tig0010956:+6246 Msa1349430:CDS
AGCCAGCTTCAAATCCTTGC+AGG 0.402276 tig0010956:-12760 Msa1349430:intergenic
CTCCTTGAGATGGAAGGTTC+TGG 0.403287 tig0010956:-11977 Msa1349430:intergenic
TCGGCGAAGCTGAGAAGTTT+GGG 0.403843 tig0010956:-5801 Msa1349430:intergenic
ATCTCAGCTTGTTGAGATAT+AGG 0.404786 tig0010956:-6734 Msa1349430:intergenic
ACCGGTTCAGAAGAAGGTTT+GGG 0.405371 tig0010956:-6083 Msa1349430:intergenic
GGCTTTGTGTATGAACTTGC+TGG 0.406116 tig0010956:+12154 Msa1349430:three_prime_UTR
GCCAGCCCAAACGCCATATA+GGG 0.407016 tig0010956:-11377 Msa1349430:intergenic
CTTCTCTCCGTATGTAAGAT+TGG 0.407770 tig0010956:+10404 Msa1349430:CDS
ATGCTGCTGCTACAACATTT+GGG 0.408332 tig0010956:-6655 Msa1349430:intergenic
CAAACAGAATTAGACACATT+TGG 0.408487 tig0010956:-12834 Msa1349430:intergenic
ACCCAAACCTTCTTCTGAAC+CGG 0.411495 tig0010956:+6082 Msa1349430:CDS
TACTGAGAAATATTTGCCTT+TGG 0.413069 tig0010956:+11218 Msa1349430:CDS
CCCGATTATATTTCGTTGGA+TGG 0.415527 tig0010956:+6299 Msa1349430:CDS
TGTCCCAAATTTGGTGGAAA+AGG 0.417465 tig0010956:+10745 Msa1349430:CDS
ACCAAACCAAAACTTAAAAC+AGG 0.418349 tig0010956:-13009 Msa1349430:intergenic
TGATCTTGAAAACTCATTAG+TGG 0.421059 tig0010956:+7956 Msa1349430:CDS
ACTTATGGATTGCCTGAAGA+TGG 0.421353 tig0010956:+10680 Msa1349430:CDS
TTGGTGAAGAGAAGGGATGA+AGG 0.422067 tig0010956:+6533 Msa1349430:CDS
ATATATTTGAGATATAATTT+CGG 0.423368 tig0010956:-8013 Msa1349430:intergenic
CCACCAGAGGTTGCAATTTG+CGG 0.423914 tig0010956:-11834 Msa1349430:intergenic
TTTAAAGGGTTTGCTTAAAC+CGG 0.427875 tig0010956:+6112 Msa1349430:CDS
GGCTGCCAGAAGTGCAGCTC+AGG 0.428325 tig0010956:+9987 Msa1349430:CDS
TGTGAATTTGTGATGAAATT+CGG 0.429574 tig0010956:+12792 Msa1349430:three_prime_UTR
GAAGGTTCTGGCCATGGTCC+TGG 0.431263 tig0010956:-11965 Msa1349430:intergenic
TTTGGAGGAGCGTGGACGAG+GGG 0.432677 tig0010956:-5850 Msa1349430:intergenic
GGCCAGCCCAAACGCCATAT+AGG 0.433336 tig0010956:-11378 Msa1349430:intergenic
CCAGTGCAGTTAGATGAGTT+TGG 0.433732 tig0010956:+10045 Msa1349430:CDS
GGTTTGGGTTCAGATGAAAT+AGG 0.434359 tig0010956:-6068 Msa1349430:intergenic
AGGATGAGGAGGAAGGATTG+TGG 0.435515 tig0010956:+6486 Msa1349430:CDS
GGATGAAGGGTCTGCTTGGG+TGG 0.439590 tig0010956:+6547 Msa1349430:CDS
TTCATACACAAAGCCGACTC+TGG 0.441923 tig0010956:-12146 Msa1349430:intergenic
ACAATAACCGGTTCAGAAGA+AGG 0.442201 tig0010956:-6089 Msa1349430:intergenic
GGGGTTGAGTGACGAGGAAC+CGG 0.445232 tig0010956:+6346 Msa1349430:CDS
AAGCGAGATTTGCTTCTGTT+GGG 0.445346 tig0010956:+6180 Msa1349430:CDS
ACGGAAATTGCGGGATTTGG+CGG 0.447191 tig0010956:-5697 Msa1349430:intergenic
TTGTGAGAGGAAGAAGAAGA+GGG 0.448221 tig0010956:-5894 Msa1349430:intergenic
AGTTGGATTCTGAAGAAAAC+GGG 0.452084 tig0010956:+6150 Msa1349430:CDS
CCTCCAAAACATTGTAGTCT+AGG 0.457179 tig0010956:-13055 Msa1349430:intergenic
CACTAACAATGACGACGAAA+TGG 0.459420 tig0010956:+9900 Msa1349430:CDS
GAAACTTCATAATGGAGAAT+AGG 0.460410 tig0010956:-10776 Msa1349430:intergenic
AGAGGCCGGATTGCAATGTT+TGG 0.461538 tig0010956:+6374 Msa1349430:CDS
CCTTCTGTTGCAAATGTGTA+TGG 0.461698 tig0010956:+6626 Msa1349430:CDS
ATGTGATATGTAGCCCAGTT+TGG 0.462168 tig0010956:+12700 Msa1349430:three_prime_UTR
GCAATGTTTGGTGGGAAGAA+GGG 0.462368 tig0010956:+6386 Msa1349430:CDS
GATGAGGAGGATGAGGAGGA+AGG 0.462593 tig0010956:+6479 Msa1349430:CDS
GCGGGATTTGGCGGAGGACA+TGG 0.464512 tig0010956:-5688 Msa1349430:intergenic
AAGGGATGAAGGGTCTGCTT+GGG 0.466099 tig0010956:+6544 Msa1349430:CDS
GAAGAAGAGCAGTGTAAGAA+AGG 0.466177 tig0010956:+6509 Msa1349430:CDS
AATTGGTAGTTCTATTGGGT+TGG 0.466748 tig0010956:-12946 Msa1349430:intergenic
TGAGGAGGATGAGGAGGATG+AGG 0.467518 tig0010956:+6472 Msa1349430:CDS
AACTTAAAACAGGTTAAGGT+TGG 0.468518 tig0010956:-12999 Msa1349430:intergenic
GGTACGGCGACGGAAATTGC+GGG 0.469208 tig0010956:-5706 Msa1349430:intergenic
GAAGGGATGAAGGGTCTGCT+TGG 0.469799 tig0010956:+6543 Msa1349430:CDS
GAGATTTAAATCTTGAGAAA+CGG 0.470006 tig0010956:+10070 Msa1349430:CDS
ACAGAAGGACCAACAAAATT+GGG 0.470471 tig0010956:-6611 Msa1349430:intergenic
GAACTACCAATTAGGGTTGA+GGG 0.473314 tig0010956:+12957 Msa1349430:three_prime_UTR
GGAGGGTTTGGAAGGGACGG+TGG 0.473626 tig0010956:-5757 Msa1349430:intergenic
GAAAGGATTGGTGAAGAGAA+GGG 0.474186 tig0010956:+6526 Msa1349430:CDS
GGTGGTTGGGGTGTCGTCGT+CGG 0.474388 tig0010956:-5739 Msa1349430:intergenic
TGCCTGCAAGGATTTGAAGC+TGG 0.475356 tig0010956:+12758 Msa1349430:three_prime_UTR
ATCACATTCTTGCTGTCTGC+AGG 0.475598 tig0010956:-12684 Msa1349430:intergenic
TTTGTGAGAGGAAGAAGAAG+AGG 0.475960 tig0010956:-5895 Msa1349430:intergenic
AGCAATGGGAAACTTCATAA+TGG 0.476899 tig0010956:-10784 Msa1349430:intergenic
GAGAAATATTTGCCTTTGGA+AGG 0.477067 tig0010956:+11222 Msa1349430:CDS
GGCGGTGGTGAAAGGTTGTT+TGG 0.477394 tig0010956:-5667 Msa1349430:intergenic
ATCGGCGTCGATTTCGTCGT+CGG 0.477526 tig0010956:-5820 Msa1349430:intergenic
AGGAAGAAGAAGAGGGTTTG+GGG 0.478043 tig0010956:-5887 Msa1349430:intergenic
CAGCCGCAAATTGCAACCTC+TGG 0.478227 tig0010956:+11831 Msa1349430:intron
TTTATGATCATCTATTTCCA+TGG 0.479341 tig0010956:-10166 Msa1349430:intergenic
TGAGAGTGATAGTGAGAGCC+AGG 0.480303 tig0010956:+10212 Msa1349430:CDS
GCATCGGCGAATACCAGCAT+TGG 0.480338 tig0010956:+6674 Msa1349430:CDS
TGGGCTGGCCCAAGTGTCAC+TGG 0.480457 tig0010956:+11391 Msa1349430:CDS
GAAGCGAGATTTGCTTCTGT+TGG 0.481047 tig0010956:+6179 Msa1349430:CDS
CACACACGAGGGAAACGAAA+GGG 0.486473 tig0010956:+5551 Msa1349430:five_prime_UTR
ACTAAGCATGTCCCAGCAAT+GGG 0.487780 tig0010956:-10798 Msa1349430:intergenic
TGAGCTTGTCCCAAATTTGG+TGG 0.487990 tig0010956:+10739 Msa1349430:CDS
AAGATCAGTAATCTTCAAAA+GGG 0.488296 tig0010956:-7940 Msa1349430:intergenic
AAATCATGATACTCCTGATA+AGG 0.489257 tig0010956:-12110 Msa1349430:intergenic
TTTCGTTAAACATAGTCTCT+TGG 0.490694 tig0010956:+12025 Msa1349430:three_prime_UTR
GTGGCTTATGTGCTGTCACT+TGG 0.490791 tig0010956:+11853 Msa1349430:CDS
AGAAAGGATTGGTGAAGAGA+AGG 0.492217 tig0010956:+6525 Msa1349430:CDS
TAAACCGGTGACGTCTGAAC+CGG 0.492962 tig0010956:+6127 Msa1349430:CDS
ATACTCCTGATAAGGTCAAA+AGG 0.494531 tig0010956:-12102 Msa1349430:intergenic
TTTATGTTCTTGAGGTGGCT+GGG 0.497059 tig0010956:+12732 Msa1349430:three_prime_UTR
GAGGACATGGCGGTGGTGAA+AGG 0.497940 tig0010956:-5675 Msa1349430:intergenic
TTATGAAGTTTCCCATTGCT+GGG 0.498610 tig0010956:+10787 Msa1349430:CDS
AATCTAAACCCTTGTGAAGT+GGG 0.502571 tig0010956:-10443 Msa1349430:intergenic
GGACAATGTTAGGAGGCTTA+AGG 0.503444 tig0010956:+6775 Msa1349430:CDS
CCAAACTCATCTAACTGCAC+TGG 0.505277 tig0010956:-10045 Msa1349430:intergenic
CTCATAATGCCTCCTTGAGA+TGG 0.505408 tig0010956:-11987 Msa1349430:intergenic
ATCCCTGGTCAAAACAAGAA+TGG 0.506312 tig0010956:+10314 Msa1349430:CDS
TGCTTAATTTGTCACTGCAA+CGG 0.507302 tig0010956:+12206 Msa1349430:three_prime_UTR
ATAGGACGAGAAGCGGTTGT+AGG 0.507409 tig0010956:-6050 Msa1349430:intergenic
CCGCAAATTGCAACCTCTGG+TGG 0.509699 tig0010956:+11834 Msa1349430:CDS
TTGTGTTGTAGGTCCCTACA+TGG 0.509980 tig0010956:+11122 Msa1349430:intron
ATAGGAATGACATCCAAAAT+CGG 0.510391 tig0010956:-6716 Msa1349430:intergenic
GAGTTGGATTCTGAAGAAAA+CGG 0.511212 tig0010956:+6149 Msa1349430:CDS
ACAGCGAGATTTGGTGCTGC+AGG 0.513777 tig0010956:+10245 Msa1349430:CDS
AGGCTAAGAGGGAGAGGATG+CGG 0.514809 tig0010956:+6258 Msa1349430:CDS
AGGGAGAGGATGCGGAAGGC+CGG 0.515080 tig0010956:+6266 Msa1349430:CDS
GACTAAGCATGTCCCAGCAA+TGG 0.515288 tig0010956:-10799 Msa1349430:intergenic
GGCCGGATTGCAATGTTTGG+TGG 0.516041 tig0010956:+6377 Msa1349430:CDS
TAAAGCAGCTAAGGCTAAGA+GGG 0.516937 tig0010956:+6247 Msa1349430:CDS
GATGAAGGGTCTGCTTGGGT+GGG 0.517157 tig0010956:+6548 Msa1349430:CDS
TCAAAACAAGAATGGAAGAA+TGG 0.517820 tig0010956:+10322 Msa1349430:CDS
GAGATGGAAGGTTCTGGCCA+TGG 0.518698 tig0010956:-11971 Msa1349430:intergenic
AGAACTACCAATTAGGGTTG+AGG 0.518854 tig0010956:+12956 Msa1349430:three_prime_UTR
AGTAATCATGGCGCTGCGGA+GGG 0.520243 tig0010956:+6326 Msa1349430:CDS
AAGGGAGATGGAGAGAAGAA+GGG 0.521292 tig0010956:+6404 Msa1349430:CDS
TTTGGTGGGAAGAAGGGAGA+TGG 0.521536 tig0010956:+6392 Msa1349430:CDS
TCTGGAGAGAAGAAATGTAC+AGG 0.522631 tig0010956:+11882 Msa1349430:CDS
CATCCAAAATCGGTGTTGCT+GGG 0.523149 tig0010956:-6706 Msa1349430:intergenic
AGTGACAAATTAAGCAATGA+AGG 0.524272 tig0010956:-12199 Msa1349430:intergenic
GACGAGGAACCGGAGTATAG+AGG 0.525115 tig0010956:+6356 Msa1349430:CDS
AGAGCAGTGTAAGAAAGGAT+TGG 0.526265 tig0010956:+6514 Msa1349430:CDS
TTGGATGGTGGAAGTAATCA+TGG 0.528537 tig0010956:+6314 Msa1349430:CDS
TCCCACCAAACATTGCAATC+CGG 0.529874 tig0010956:-6379 Msa1349430:intergenic
GGCGGAGGGTTTGGAAGGGA+CGG 0.532176 tig0010956:-5760 Msa1349430:intergenic
TTTGGCGGAGGACATGGCGG+TGG 0.532685 tig0010956:-5682 Msa1349430:intergenic
GTTTGGAGGAGCGTGGACGA+GGG 0.533078 tig0010956:-5851 Msa1349430:intergenic
TAAATACTGTGCGCCAAACT+GGG 0.533792 tig0010956:-12713 Msa1349430:intergenic
TGATGCTGTTGCTAAACTTA+CGG 0.534171 tig0010956:+10931 Msa1349430:CDS
GCACAGTATTTATGTTCTTG+AGG 0.534703 tig0010956:+12724 Msa1349430:three_prime_UTR
ATAATCGGGTGCAGCAGCAC+CGG 0.538039 tig0010956:-6285 Msa1349430:intergenic
TGCACCCGATTATATTTCGT+TGG 0.539945 tig0010956:+6295 Msa1349430:CDS
CTCGCTGTGACTGATATGCC+TGG 0.540448 tig0010956:-10230 Msa1349430:intergenic
AAGTAATCATGGCGCTGCGG+AGG 0.541514 tig0010956:+6325 Msa1349430:CDS
CAGCTAAGGCTAAGAGGGAG+AGG 0.542351 tig0010956:+6252 Msa1349430:CDS
GTGGCTGGGATTTGCCTGCA+AGG 0.542832 tig0010956:+12746 Msa1349430:three_prime_UTR
GGTGGTTGATGAGGAGGATG+AGG 0.546740 tig0010956:+6463 Msa1349430:CDS
CTCCAAAACATTGTAGTCTA+GGG 0.547055 tig0010956:-13054 Msa1349430:intergenic
GGAGGATGAGGAGGATGAGG+AGG 0.547814 tig0010956:+6475 Msa1349430:CDS
GCATCTTTCACTCCCAGAGT+CGG 0.550538 tig0010956:+12133 Msa1349430:three_prime_UTR
CGGTACGGCGACGGAAATTG+CGG 0.552419 tig0010956:-5707 Msa1349430:intergenic
TGTCGATGTGGTGGTTGATG+AGG 0.554191 tig0010956:+6454 Msa1349430:CDS
CACTTGAGAAGGCTAACCCT+GGG 0.555297 tig0010956:-12065 Msa1349430:intergenic
AAGCGGTTGTAGGAGTGACT+AGG 0.555541 tig0010956:-6040 Msa1349430:intergenic
AGAGGATATTAAAGCAGCTA+AGG 0.556189 tig0010956:+6238 Msa1349430:CDS
GCCGGATTGCAATGTTTGGT+GGG 0.557759 tig0010956:+6378 Msa1349430:CDS
GAAATTGCGGGATTTGGCGG+AGG 0.560318 tig0010956:-5694 Msa1349430:intergenic
TGGATTGCCTGAAGATGGAA+AGG 0.560781 tig0010956:+10685 Msa1349430:CDS
GGCCAGAACCTTCCATCTCA+AGG 0.561957 tig0010956:+11975 Msa1349430:CDS
GTACTAGTGGACTCCATGTA+GGG 0.564438 tig0010956:-11135 Msa1349430:intergenic
CCAAATTTGGGACAAGCTCA+AGG 0.564443 tig0010956:-10736 Msa1349430:intergenic
GATTATATTTCGTTGGATGG+TGG 0.564911 tig0010956:+6302 Msa1349430:CDS
TGGTGAAGAGAAGGGATGAA+GGG 0.566653 tig0010956:+6534 Msa1349430:CDS
GGAACATATGAAACTAATTG+AGG 0.569143 tig0010956:+12175 Msa1349430:three_prime_UTR
AAATGTTGTAGCAGCAGCAT+CGG 0.570378 tig0010956:+6658 Msa1349430:CDS
AGTACTAGTGGACTCCATGT+AGG 0.570562 tig0010956:-11136 Msa1349430:intergenic
AAATCTAAACCCTTGTGAAG+TGG 0.570577 tig0010956:-10444 Msa1349430:intergenic
CAGTATTTATGTTCTTGAGG+TGG 0.572317 tig0010956:+12727 Msa1349430:three_prime_UTR
GCTTGAGGTTGAACATTGGA+AGG 0.572614 tig0010956:-5966 Msa1349430:intergenic
TCCAATGTTCAACCTCAAGC+TGG 0.573810 tig0010956:+5969 Msa1349430:CDS
CCATCCAACGAAATATAATC+GGG 0.574191 tig0010956:-6299 Msa1349430:intergenic
TCAATGAATATGATCATGCC+AGG 0.574695 tig0010956:+11947 Msa1349430:CDS
TCATACACAAAGCCGACTCT+GGG 0.575616 tig0010956:-12145 Msa1349430:intergenic
ATGTTGGGGAGTTCGGCCCA+GGG 0.576619 tig0010956:+12049 Msa1349430:three_prime_UTR
GGATGAGAGGTTTGTCGATG+TGG 0.578395 tig0010956:+6442 Msa1349430:CDS
TTAGGGGCGGAGGGTTTGGA+AGG 0.578669 tig0010956:-5765 Msa1349430:intergenic
CGATGTGGTGGTTGATGAGG+AGG 0.579918 tig0010956:+6457 Msa1349430:CDS
AATAGATGATCATAAAGTAG+AGG 0.580527 tig0010956:+10173 Msa1349430:CDS
CAATGACGACGAAATGGTTG+AGG 0.582119 tig0010956:+9906 Msa1349430:CDS
AGGAGTTCCAATCTTACATA+CGG 0.583616 tig0010956:-10411 Msa1349430:intergenic
TGGTGGGGTTTGGAGGAGCG+TGG 0.584019 tig0010956:-5858 Msa1349430:intergenic
TAGGGGCGGAGGGTTTGGAA+GGG 0.584957 tig0010956:-5764 Msa1349430:intergenic
CTGAGGCTCGTCAACGCAGG+AGG 0.585117 tig0010956:+10112 Msa1349430:CDS
GGAATATAGTCAATTATCCC+TGG 0.587507 tig0010956:+10299 Msa1349430:CDS
CATAGTCTCTTGGTATGTTG+GGG 0.588680 tig0010956:+12035 Msa1349430:three_prime_UTR
GAGGTGGGACCCACTTCACA+AGG 0.589764 tig0010956:+10434 Msa1349430:CDS
CCATACACATTTGCAACAGA+AGG 0.589975 tig0010956:-6626 Msa1349430:intergenic
TAATGCCTCCTTGAGATGGA+AGG 0.592091 tig0010956:-11983 Msa1349430:intergenic
TGGCTGAGGCTCGTCAACGC+AGG 0.592093 tig0010956:+10109 Msa1349430:CDS
ACGGAAGAAAATGAAAGTGA+TGG 0.593973 tig0010956:+10089 Msa1349430:CDS
AGTTAGTGTCGGTACGGCGA+CGG 0.595495 tig0010956:-5716 Msa1349430:intergenic
GGAACAGCAGCTAGTACTAG+TGG 0.596202 tig0010956:-11148 Msa1349430:intergenic
ATAGATGATCATAAAGTAGA+GGG 0.596739 tig0010956:+10174 Msa1349430:CDS
CGAAACTAGCAGATCTGCAA+GGG 0.598859 tig0010956:-10891 Msa1349430:intergenic
TCTGAAGTACTCACTTGAGA+AGG 0.598945 tig0010956:-12076 Msa1349430:intergenic
ATCAGTAATCTTCAAAAGGG+AGG 0.599810 tig0010956:-7937 Msa1349430:intergenic
GCTTTAATATCCTCTTCACC+AGG 0.602215 tig0010956:-6230 Msa1349430:intergenic
TCGAAACTAGCAGATCTGCA+AGG 0.605083 tig0010956:-10892 Msa1349430:intergenic
TGGCATGATCATATTCATTG+AGG 0.605222 tig0010956:-11945 Msa1349430:intergenic
TAAGATTGGAACTCCTGAGG+TGG 0.605796 tig0010956:+10418 Msa1349430:CDS
TACCAATTAGGGTTGAGGGA+TGG 0.607290 tig0010956:+12961 Msa1349430:three_prime_UTR
TCTGATATGCTTCTAAAGTG+AGG 0.607880 tig0010956:-11310 Msa1349430:intergenic
CACAAATGACAGGAATCACA+TGG 0.609144 tig0010956:+7870 Msa1349430:intron
GGTTGATGAGGAGGATGAGG+AGG 0.609374 tig0010956:+6466 Msa1349430:CDS
AATTAGGGTTGAGGGATGGA+AGG 0.609579 tig0010956:+12965 Msa1349430:three_prime_UTR
CGTCGGAGTTAGTGTCGGTA+CGG 0.610527 tig0010956:-5722 Msa1349430:intergenic
ACCAGCTTGAGGTTGAACAT+TGG 0.610869 tig0010956:-5970 Msa1349430:intergenic
GTAATCATGGCGCTGCGGAG+GGG 0.610897 tig0010956:+6327 Msa1349430:CDS
TCACTTGAGAAGGCTAACCC+TGG 0.612383 tig0010956:-12066 Msa1349430:intergenic
AGGAACCGGAGTATAGAGGC+CGG 0.612699 tig0010956:+6360 Msa1349430:CDS
AATTCGGAGCATTTGGTACG+AGG 0.613315 tig0010956:+12808 Msa1349430:three_prime_UTR
TCGGCGAATACCAGCATTGG+GGG 0.614034 tig0010956:+6677 Msa1349430:CDS
GAAGATCAGTGGAAGACTCA+CGG 0.616090 tig0010956:-10385 Msa1349430:intergenic
AACTCCGGTTCAGACGTCAC+CGG 0.617418 tig0010956:-6131 Msa1349430:intergenic
TGCGGAGGGGTTGAGTGACG+AGG 0.618970 tig0010956:+6340 Msa1349430:CDS
AAGAAGAAGAGGGTTTGGGG+CGG 0.619600 tig0010956:-5884 Msa1349430:intergenic
AGCGGTTGTAGGAGTGACTA+GGG 0.620321 tig0010956:-6039 Msa1349430:intergenic
GTCGTCGTCGGAGTTAGTGT+CGG 0.620489 tig0010956:-5727 Msa1349430:intergenic
CTATGCTGGACAATGTTAGG+AGG 0.621020 tig0010956:+6768 Msa1349430:CDS
GCAATCCGGCCTCTATACTC+CGG 0.626207 tig0010956:-6365 Msa1349430:intergenic
ACGAAGTGCTTCTAAGGTGT+AGG 0.628934 tig0010956:-5994 Msa1349430:intergenic
TAAGAGGGAGAGGATGCGGA+AGG 0.631007 tig0010956:+6262 Msa1349430:CDS
AAGGTGTAGGTACCAGCTTG+AGG 0.635635 tig0010956:-5981 Msa1349430:intergenic
ACACACGAGGGAAACGAAAG+GGG 0.635967 tig0010956:+5552 Msa1349430:five_prime_UTR
ACACACACGAGGGAAACGAA+AGG 0.637313 tig0010956:+5550 Msa1349430:five_prime_UTR
GAAAATGAAAGTGATGGCTG+AGG 0.637984 tig0010956:+10095 Msa1349430:CDS
GGTTGAACATTGGAAGGTGA+AGG 0.640065 tig0010956:-5960 Msa1349430:intergenic
TTGCAAATATGTCCTTCCAA+AGG 0.640067 tig0010956:-11234 Msa1349430:intergenic
AGATGAAATAGGACGAGAAG+CGG 0.643147 tig0010956:-6057 Msa1349430:intergenic
GCGAAGCTGAGAAGTTTGGG+TGG 0.643668 tig0010956:-5798 Msa1349430:intergenic
AAGATTGGAACTCCTGAGGT+GGG 0.645146 tig0010956:+10419 Msa1349430:CDS
ACATTGGAAGGTGAAGGTGA+AGG 0.648175 tig0010956:-5954 Msa1349430:intergenic
AGCATCACTGAAAATCTCAT+CGG 0.649221 tig0010956:-10271 Msa1349430:intergenic
TGAGAGGTTTGTCGATGTGG+TGG 0.649832 tig0010956:+6445 Msa1349430:CDS
ATATGATCATGCCAGGACCA+TGG 0.660979 tig0010956:+11954 Msa1349430:CDS
ATGTAAGATTGGAACTCCTG+AGG 0.665048 tig0010956:+10415 Msa1349430:CDS
TCTCTAACCAGACACACACG+AGG 0.667578 tig0010956:+5539 None:intergenic
ATCGGCGAATACCAGCATTG+GGG 0.671713 tig0010956:+6676 Msa1349430:CDS
ATGCAATAACAAGAACAGAA+CGG 0.677815 tig0010956:+11344 Msa1349430:CDS
GGATTTGGCGGAGGACATGG+CGG 0.680780 tig0010956:-5685 Msa1349430:intergenic
ACATACGGAGAGAAGATCAG+TGG 0.686418 tig0010956:-10396 Msa1349430:intergenic
CAGGAAAGGTGACAACGTGG+AGG 0.699343 tig0010956:+9966 Msa1349430:CDS
AGGTGGGACCCACTTCACAA+GGG 0.699494 tig0010956:+10435 Msa1349430:CDS
TGGAAGTAATCATGGCGCTG+CGG 0.699526 tig0010956:+6322 Msa1349430:CDS
GACAGCACATAAGCCACCAG+AGG 0.711177 tig0010956:-11847 Msa1349430:intergenic
AAGCAGGAAAGGTGACAACG+TGG 0.725920 tig0010956:+9963 Msa1349430:CDS
CTCTAACCAGACACACACGA+GGG 0.736911 tig0010956:+5540 None:intergenic
GTTGGATTCTGAAGAAAACG+GGG 0.745031 tig0010956:+6151 Msa1349430:CDS
CAGAACCTTCCATCTCAAGG+AGG 0.749650 tig0010956:+11978 Msa1349430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATATTTGAGATATAATTT+CGG - tig0010956:8016-8035 Msa1349430:intergenic 10.0%
!! AAAAAAAAAATTGATTGTAT+TGG + tig0010956:9576-9595 Msa1349430:intron 10.0%
!! TGATTTATATACTATATATT+GGG + tig0010956:11038-11057 Msa1349430:intron 10.0%
!! TTGAATATATTGTTTATAAA+AGG + tig0010956:12916-12935 Msa1349430:three_prime_UTR 10.0%
!! TGATAATTAGATATTGATAT+AGG + tig0010956:7113-7132 Msa1349430:intron 15.0%
!! GATAATTAGATATTGATATA+GGG + tig0010956:7114-7133 Msa1349430:intron 15.0%
!! CTTCTTAATTAAATAAAAGT+GGG + tig0010956:8095-8114 Msa1349430:intron 15.0%
!! ATTAATCATATAAGAATTCA+AGG + tig0010956:8599-8618 Msa1349430:intron 15.0%
!! AATTATACAATGATGTAAAA+AGG + tig0010956:9155-9174 Msa1349430:intron 15.0%
!! TAATACAACAAATAATTTCA+TGG + tig0010956:9524-9543 Msa1349430:intron 15.0%
!! AAAAATGGAAAATATAGAAT+AGG - tig0010956:10492-10511 Msa1349430:intergenic 15.0%
!!! TATAAATTGTTATTCACTTA+TGG + tig0010956:10665-10684 Msa1349430:CDS 15.0%
!! GTGATTTATATACTATATAT+TGG + tig0010956:11037-11056 Msa1349430:intron 15.0%
!! TGTAAAATCTCATAATAATA+CGG + tig0010956:12507-12526 Msa1349430:intron 15.0%
!! CACTTATATGATACATTAAA+TGG - tig0010956:6985-7004 Msa1349430:intergenic 20.0%
!! ATCAATATCTAATTATCAAC+AGG - tig0010956:7111-7130 Msa1349430:intergenic 20.0%
!!! TCTTTTATCATATGTAATCA+AGG - tig0010956:7316-7335 Msa1349430:intergenic 20.0%
!!! TCTTTTATCATATGTAATCA+AGG - tig0010956:7316-7335 Msa1349430:intergenic 20.0%
!! TGTTGTATATGATTATGAAT+AGG + tig0010956:7608-7627 Msa1349430:intron 20.0%
!!! TTATTTTTCAGATCCAAATA+TGG + tig0010956:7714-7733 Msa1349430:intron 20.0%
!! TTTAATTAAGAAGGAAGATA+AGG - tig0010956:8088-8107 Msa1349430:intergenic 20.0%
!!! CCACTTTTATTTAATTAAGA+AGG - tig0010956:8097-8116 Msa1349430:intergenic 20.0%
!! CCTTCTTAATTAAATAAAAG+TGG + tig0010956:8094-8113 Msa1349430:intron 20.0%
!! TACTTCATTAGTAAAATAGA+AGG - tig0010956:8207-8226 Msa1349430:intergenic 20.0%
!!! AAATTTTTGATGTGCTTATA+AGG + tig0010956:8484-8503 Msa1349430:intron 20.0%
!!! TTAACAGCACTTTTTTTTTT+TGG - tig0010956:8871-8890 Msa1349430:intergenic 20.0%
!!! ATTTTAAGTGTTGGATATTT+AGG + tig0010956:8997-9016 Msa1349430:intron 20.0%
!! TGATTTAATATGTAGTGTTA+TGG + tig0010956:9106-9125 Msa1349430:intron 20.0%
!! TATATGCTCATATAACTATT+TGG - tig0010956:9299-9318 Msa1349430:intergenic 20.0%
!! TTTATTTGTCTCCAATAAAT+AGG - tig0010956:9494-9513 Msa1349430:intergenic 20.0%
!! AAATAATTTCATGGTTATCA+TGG + tig0010956:9533-9552 Msa1349430:intron 20.0%
!!! TAGATTTTCAAGATATGAAA+TGG + tig0010956:10460-10479 Msa1349430:CDS 20.0%
!! TCAAGAAAGAATACTAAAAA+TGG - tig0010956:10507-10526 Msa1349430:intergenic 20.0%
!!! ATTCTTTCTTGAATCTTTTT+AGG + tig0010956:10515-10534 Msa1349430:intron 20.0%
!!! TTCTTTCTTGAATCTTTTTA+GGG + tig0010956:10516-10535 Msa1349430:intron 20.0%
!!! TATTTGTTTTGTTCATTTTC+TGG + tig0010956:11003-11022 Msa1349430:intron 20.0%
!! TTAGAATACCAGAAATAATT+TGG + tig0010956:11539-11558 Msa1349430:intron 20.0%
!! TAGAATACCAGAAATAATTT+GGG + tig0010956:11540-11559 Msa1349430:intron 20.0%
!!! TTTACAAAATTTGTTCTCTA+GGG - tig0010956:12339-12358 Msa1349430:intergenic 20.0%
!!! TTTTACAAAATTTGTTCTCT+AGG - tig0010956:12340-12359 Msa1349430:intergenic 20.0%
!! GTAAAATCTCATAATAATAC+GGG + tig0010956:12508-12527 Msa1349430:intron 20.0%
!! TAAAATCTCATAATAATACG+GGG + tig0010956:12509-12528 Msa1349430:intron 20.0%
!!! AAACCCTTTAAAACAATAAC+CGG - tig0010956:6104-6123 Msa1349430:intergenic 25.0%
! ATGTATCATATAAGTGACTT+TGG + tig0010956:6989-7008 Msa1349430:intron 25.0%
! CATCAAAAGAATCATAATTG+TGG + tig0010956:7012-7031 Msa1349430:intron 25.0%
!! AATCATAATTGTGGTTTTCT+TGG + tig0010956:7021-7040 Msa1349430:intron 25.0%
! TGATGGTTAAAAGAAAAGAA+TGG + tig0010956:7487-7506 Msa1349430:intron 25.0%
!!! TTTTAAGGGACCAATAATAT+AGG + tig0010956:7519-7538 Msa1349430:intron 25.0%
! AAACTATGTTTGTGCTTAAA+TGG + tig0010956:7557-7576 Msa1349430:intron 25.0%
! AACTATGTTTGTGCTTAAAT+GGG + tig0010956:7558-7577 Msa1349430:intron 25.0%
! ATGATTATGAATAGGTAAAC+AGG + tig0010956:7616-7635 Msa1349430:intron 25.0%
! ATTCTCACATAAACCATATT+TGG - tig0010956:7730-7749 Msa1349430:intergenic 25.0%
!!! TATACAGCTTTATTTTTCTG+CGG + tig0010956:7812-7831 Msa1349430:intron 25.0%
! AAGATCAGTAATCTTCAAAA+GGG - tig0010956:7943-7962 Msa1349430:intergenic 25.0%
!! AAATATATGCGACTTTTTAC+AGG + tig0010956:8028-8047 Msa1349430:CDS 25.0%
!! CTTCGATAAGTAATTTTGTA+CGG - tig0010956:8127-8146 Msa1349430:intergenic 25.0%
! ATACTAGTGATATTATGACA+GGG - tig0010956:8159-8178 Msa1349430:intergenic 25.0%
! AATACTAGTGATATTATGAC+AGG - tig0010956:8160-8179 Msa1349430:intergenic 25.0%
! AAAATAGATCAAAGGACTTA+AGG - tig0010956:8295-8314 Msa1349430:intergenic 25.0%
! GTTAACAGAAAATAGATCAA+AGG - tig0010956:8303-8322 Msa1349430:intergenic 25.0%
! AAATAAACACTTACGAGTTT+AGG + tig0010956:8388-8407 Msa1349430:intron 25.0%
!! GTTTATTCTAGGAATTAAGA+TGG - tig0010956:8777-8796 Msa1349430:intergenic 25.0%
!!! AATAAACTCATAGCTTTGTT+TGG + tig0010956:8790-8809 Msa1349430:intron 25.0%
!!! ATAAACTCATAGCTTTGTTT+GGG + tig0010956:8791-8810 Msa1349430:intron 25.0%
!!! TTTTTTTTTGGCATATTTGC+TGG - tig0010956:8859-8878 Msa1349430:intergenic 25.0%
! TTTAGTCTATGTATGTATTG+TGG + tig0010956:8931-8950 Msa1349430:intron 25.0%
!! ATTGTGGATTTTCCTATTTT+AGG + tig0010956:8947-8966 Msa1349430:intron 25.0%
!!! AAAATGAGGATTTTAAGTGT+TGG + tig0010956:8988-9007 Msa1349430:intron 25.0%
! ATAAAAAGCAACACATAGAA+AGG - tig0010956:9408-9427 Msa1349430:intergenic 25.0%
! TCTTAAAGCAACACATAAAA+AGG + tig0010956:9612-9631 Msa1349430:intron 25.0%
!! TTTATTTGAGGCTAATACTA+AGG + tig0010956:9768-9787 Msa1349430:intron 25.0%
! GAGATTTAAATCTTGAGAAA+CGG + tig0010956:10070-10089 Msa1349430:CDS 25.0%
!!! AGCTTTTGATTCTAAAAAGT+CGG + tig0010956:10140-10159 Msa1349430:CDS 25.0%
! TTTATGATCATCTATTTCCA+TGG - tig0010956:10169-10188 Msa1349430:intergenic 25.0%
! AATAGATGATCATAAAGTAG+AGG + tig0010956:10173-10192 Msa1349430:CDS 25.0%
! ATAGATGATCATAAAGTAGA+GGG + tig0010956:10174-10193 Msa1349430:CDS 25.0%
!! TCTTTCTTGAATCTTTTTAG+GGG + tig0010956:10517-10536 Msa1349430:intron 25.0%
! AAAACTCTACCATAAATTCA+AGG - tig0010956:10611-10630 Msa1349430:intergenic 25.0%
! TTAACTAGTAAAGCAGTATA+TGG + tig0010956:10980-10999 Msa1349430:intron 25.0%
!! TGTCAAAGTTTTTGTGAAAT+TGG + tig0010956:11440-11459 Msa1349430:intron 25.0%
! AGAATACCAGAAATAATTTG+GGG + tig0010956:11541-11560 Msa1349430:intron 25.0%
! TGTATGCACTACATATAATA+AGG - tig0010956:11730-11749 Msa1349430:intergenic 25.0%
! TTATATTAACACACATGAAG+AGG - tig0010956:11765-11784 Msa1349430:intergenic 25.0%
! TAAATAATCACAGTAGAGAA+AGG - tig0010956:12367-12386 Msa1349430:intergenic 25.0%
! AAAATCTCATAATAATACGG+GGG + tig0010956:12510-12529 Msa1349430:intron 25.0%
! ATTTAACCAATTTGTAGCAA+TGG + tig0010956:12537-12556 Msa1349430:intron 25.0%
! TGTGAATTTGTGATGAAATT+CGG + tig0010956:12792-12811 Msa1349430:three_prime_UTR 25.0%
!!! AACTATTCTGTTTTTGTGAG+TGG - tig0010956:5925-5944 Msa1349430:intergenic 30.0%
!!! TGAACCGGTTATTGTTTTAA+AGG + tig0010956:6097-6116 Msa1349430:CDS 30.0%
!!! GAACCGGTTATTGTTTTAAA+GGG + tig0010956:6098-6117 Msa1349430:CDS 30.0%
! TTTAAAGGGTTTGCTTAAAC+CGG + tig0010956:6112-6131 Msa1349430:CDS 30.0%
CTTCTGTTGGGATTAAAAAT+GGG + tig0010956:6192-6211 Msa1349430:CDS 30.0%
ACCATCCAACGAAATATAAT+CGG - tig0010956:6303-6322 Msa1349430:intergenic 30.0%
ATAGGAATGACATCCAAAAT+CGG - tig0010956:6719-6738 Msa1349430:intergenic 30.0%
AATTAATGATCTCATGCACA+TGG + tig0010956:6863-6882 Msa1349430:intron 30.0%
!!! AATGGCGATAGTTGTTTTAA+GGG + tig0010956:7505-7524 Msa1349430:intron 30.0%
AAAAAGCAAGTACCTATTGA+CGG - tig0010956:7676-7695 Msa1349430:intergenic 30.0%
TGGTTTATGTGAGAATGTTA+TGG + tig0010956:7734-7753 Msa1349430:intron 30.0%
CAAGATCAGTAATCTTCAAA+AGG - tig0010956:7944-7963 Msa1349430:intergenic 30.0%
TGATCTTGAAAACTCATTAG+TGG + tig0010956:7956-7975 Msa1349430:CDS 30.0%
CGTACAAAATTACTTATCGA+AGG + tig0010956:8125-8144 Msa1349430:intron 30.0%
!!! AGTAGCTACATTGATTTTGA+TGG + tig0010956:8223-8242 Msa1349430:intron 30.0%
!!! TACATTGATTTTGATGGTAG+TGG + tig0010956:8229-8248 Msa1349430:intron 30.0%
! TGTGAAATATGTACTGATGA+AGG + tig0010956:8423-8442 Msa1349430:intron 30.0%
! GTGAAATATGTACTGATGAA+GGG + tig0010956:8424-8443 Msa1349430:intron 30.0%
! TGAAATATGTACTGATGAAG+GGG + tig0010956:8425-8444 Msa1349430:intron 30.0%
! TTTTTGATGTGCTTATAAGG+AGG + tig0010956:8487-8506 Msa1349430:intron 30.0%
CAACATCAACCAATTTAGAA+TGG - tig0010956:8519-8538 Msa1349430:intergenic 30.0%
!!! TTGATGTTGCTATTTTTGTG+TGG + tig0010956:8530-8549 Msa1349430:intron 30.0%
! AACAACATTTTTGCCTATGT+AGG + tig0010956:8630-8649 Msa1349430:intron 30.0%
AGTAATATTCCATCCTACAT+AGG - tig0010956:8646-8665 Msa1349430:intergenic 30.0%
TGGTCATTACAAAATGATAG+TGG - tig0010956:8744-8763 Msa1349430:intergenic 30.0%
! TTCTAGGAATTAAGATGGAA+TGG - tig0010956:8772-8791 Msa1349430:intergenic 30.0%
CAAAGCTATGAGTTTATTCT+AGG - tig0010956:8788-8807 Msa1349430:intergenic 30.0%
TGATGGAAGAATGTAAAATG+AGG + tig0010956:8974-8993 Msa1349430:intron 30.0%
!!! ATTTTGATTAATTCCCTTGC+TGG + tig0010956:9020-9039 Msa1349430:intron 30.0%
!!! CTGCTATTTTTTACCAAACA+GGG - tig0010956:9069-9088 Msa1349430:intergenic 30.0%
!!! TCTGCTATTTTTTACCAAAC+AGG - tig0010956:9070-9089 Msa1349430:intergenic 30.0%
TGGTAAAAAATAGCAGATAG+CGG + tig0010956:9073-9092 Msa1349430:intron 30.0%
! TTTTCCCAATTAAGATGATG+AGG + tig0010956:9192-9211 Msa1349430:intron 30.0%
TTTCCCAATTAAGATGATGA+GGG + tig0010956:9193-9212 Msa1349430:intron 30.0%
TTACCCTCATCATCTTAATT+GGG - tig0010956:9199-9218 Msa1349430:intergenic 30.0%
TTTACCCTCATCATCTTAAT+TGG - tig0010956:9200-9219 Msa1349430:intergenic 30.0%
CTATGTCCTTACCTATTTAT+TGG + tig0010956:9480-9499 Msa1349430:intron 30.0%
TTGTCTCCAATAAATAGGTA+AGG - tig0010956:9489-9508 Msa1349430:intergenic 30.0%
GGAGACAAATAAATGAAATG+AGG + tig0010956:9501-9520 Msa1349430:intron 30.0%
TCAAAACAAGAATGGAAGAA+TGG + tig0010956:10322-10341 Msa1349430:CDS 30.0%
GTTTACCTTCCTTGAATTTA+TGG + tig0010956:10599-10618 Msa1349430:intron 30.0%
CTCTCTCTCTCTTTATATTT+AGG + tig0010956:10642-10661 Msa1349430:intron 30.0%
! AAGGATTTTGTTCATGATGA+TGG + tig0010956:10704-10723 Msa1349430:CDS 30.0%
! GAAACTTCATAATGGAGAAT+AGG - tig0010956:10779-10798 Msa1349430:intergenic 30.0%
!! TTGTTTTGTTCATTTTCTGG+TGG + tig0010956:11006-11025 Msa1349430:intron 30.0%
ATACTATATATTGGGCTTGT+AGG + tig0010956:11046-11065 Msa1349430:intron 30.0%
AGGAACTAGTAAACTAGTAA+CGG + tig0010956:11066-11085 Msa1349430:intron 30.0%
! AAAATTGCAGCATATCGATT+TGG + tig0010956:11181-11200 Msa1349430:CDS 30.0%
TACTGAGAAATATTTGCCTT+TGG + tig0010956:11218-11237 Msa1349430:CDS 30.0%
ATGCAATAACAAGAACAGAA+CGG + tig0010956:11344-11363 Msa1349430:CDS 30.0%
! CAAAGTTTTTGTGAAATTGG+TGG + tig0010956:11443-11462 Msa1349430:intron 30.0%
ATATGCAAATGTCTCATCAA+AGG - tig0010956:11482-11501 Msa1349430:intergenic 30.0%
TCTTCTTATCATGTTACTGT+CGG + tig0010956:11516-11535 Msa1349430:intron 30.0%
GAATACCAGAAATAATTTGG+GGG + tig0010956:11542-11561 Msa1349430:intron 30.0%
CACAAAGAAGCAAATCAATT+AGG - tig0010956:11662-11681 Msa1349430:intergenic 30.0%
!! CTAATTGATTTGCTTCTTTG+TGG + tig0010956:11660-11679 Msa1349430:intron 30.0%
AACAAAAATAGAGAAGGACA+TGG - tig0010956:11810-11829 Msa1349430:intergenic 30.0%
TTTCGTTAAACATAGTCTCT+TGG + tig0010956:12025-12044 Msa1349430:three_prime_UTR 30.0%
AAATCATGATACTCCTGATA+AGG - tig0010956:12113-12132 Msa1349430:intergenic 30.0%
GGAACATATGAAACTAATTG+AGG + tig0010956:12175-12194 Msa1349430:three_prime_UTR 30.0%
AGTGACAAATTAAGCAATGA+AGG - tig0010956:12202-12221 Msa1349430:intergenic 30.0%
!!! ACATATGCATTTTTGGTTCT+TGG - tig0010956:12242-12261 Msa1349430:intergenic 30.0%
! AGATGGTACATATGCATTTT+TGG - tig0010956:12249-12268 Msa1349430:intergenic 30.0%
ATAGCAATGGAAGAAAAAAG+TGG - tig0010956:12307-12326 Msa1349430:intergenic 30.0%
!! TATTTTGAATCAAGTTCGAG+TGG + tig0010956:12438-12457 Msa1349430:intron 30.0%
TAACTATCTAAACACATTGC+CGG - tig0010956:12473-12492 Msa1349430:intergenic 30.0%
CAAACAGAATTAGACACATT+TGG - tig0010956:12837-12856 Msa1349430:intergenic 30.0%
AACTTAAAACAGGTTAAGGT+TGG - tig0010956:13002-13021 Msa1349430:intergenic 30.0%
CCAAAACTTAAAACAGGTTA+AGG - tig0010956:13006-13025 Msa1349430:intergenic 30.0%
!!! CCTTAACCTGTTTTAAGTTT+TGG + tig0010956:13003-13022 Msa1349430:three_prime_UTR 30.0%
!!! ACCTGTTTTAAGTTTTGGTT+TGG + tig0010956:13008-13027 Msa1349430:three_prime_UTR 30.0%
ACCAAACCAAAACTTAAAAC+AGG - tig0010956:13012-13031 Msa1349430:intergenic 30.0%
! TTCTTGAGTGTTGTTGTTGT+TGG - tig0010956:5590-5609 Msa1349430:intergenic 35.0%
!!! TGGGTGGTTTTTTAGGTTTA+GGG - tig0010956:5785-5804 Msa1349430:intergenic 35.0%
!!! TTGGGTGGTTTTTTAGGTTT+AGG - tig0010956:5786-5805 Msa1349430:intergenic 35.0%
!!! AGAAGTTTGGGTGGTTTTTT+AGG - tig0010956:5792-5811 Msa1349430:intergenic 35.0%
! TTTTCTTCAGAATCCAACTC+CGG - tig0010956:6149-6168 Msa1349430:intergenic 35.0%
! GAGTTGGATTCTGAAGAAAA+CGG + tig0010956:6149-6168 Msa1349430:CDS 35.0%
! AGTTGGATTCTGAAGAAAAC+GGG + tig0010956:6150-6169 Msa1349430:CDS 35.0%
GCTTCTGTTGGGATTAAAAA+TGG + tig0010956:6191-6210 Msa1349430:CDS 35.0%
AGAGGATATTAAAGCAGCTA+AGG + tig0010956:6238-6257 Msa1349430:CDS 35.0%
CCATCCAACGAAATATAATC+GGG - tig0010956:6302-6321 Msa1349430:intergenic 35.0%
GATTATATTTCGTTGGATGG+TGG + tig0010956:6302-6321 Msa1349430:CDS 35.0%
ACAGAAGGACCAACAAAATT+GGG - tig0010956:6614-6633 Msa1349430:intergenic 35.0%
AACAGAAGGACCAACAAAAT+TGG - tig0010956:6615-6634 Msa1349430:intergenic 35.0%
!! ATCTCAGCTTGTTGAGATAT+AGG - tig0010956:6737-6756 Msa1349430:intergenic 35.0%
GATTGCAAAAAAAGCTATGC+TGG + tig0010956:6754-6773 Msa1349430:CDS 35.0%
GTACCAAACTCATTTGTATC+AGG + tig0010956:6818-6837 Msa1349430:intron 35.0%
! TGTGGTTTTCTTGGTAAGAA+AGG + tig0010956:7030-7049 Msa1349430:intron 35.0%
! CATCATATTTTACAACCCTC+TGG - tig0010956:7472-7491 Msa1349430:intergenic 35.0%
CAGAGGGTTGTAAAATATGA+TGG + tig0010956:7470-7489 Msa1349430:intron 35.0%
!! GAATGGCGATAGTTGTTTTA+AGG + tig0010956:7504-7523 Msa1349430:intron 35.0%
GCACGTTAAGCCTATATTAT+TGG - tig0010956:7532-7551 Msa1349430:intergenic 35.0%
! AAAGTCTTATCCCACTAAGT+GGG - tig0010956:7784-7803 Msa1349430:intergenic 35.0%
! ATGTGATTCCTGTCATTTGT+GGG - tig0010956:7871-7890 Msa1349430:intergenic 35.0%
ATCAGTAATCTTCAAAAGGG+AGG - tig0010956:7940-7959 Msa1349430:intergenic 35.0%
! TATGCGACTTTTTACAGGTA+AGG + tig0010956:8033-8052 Msa1349430:intron 35.0%
TTGGAAGAATGCACGAAATA+AGG - tig0010956:8062-8081 Msa1349430:intergenic 35.0%
AAGAAGGAAGATAAGGAACT+TGG - tig0010956:8081-8100 Msa1349430:intergenic 35.0%
!!! TGATTTTGATGGTAGTGGAA+AGG + tig0010956:8234-8253 Msa1349430:intron 35.0%
!! GTGTTTATTTTCAGTCGTTG+TGG - tig0010956:8378-8397 Msa1349430:intergenic 35.0%
! GAAATATGTACTGATGAAGG+GGG + tig0010956:8426-8445 Msa1349430:intron 35.0%
!! AGGAAGTGTCCATTCTAAAT+TGG + tig0010956:8507-8526 Msa1349430:intron 35.0%
!! AATTTGTTGTCCAAAGTGGT+AGG + tig0010956:8555-8574 Msa1349430:intron 35.0%
!! ATTTGTTGTCCAAAGTGGTA+GGG + tig0010956:8556-8575 Msa1349430:intron 35.0%
! ACATTTTTGCCTATGTAGGA+TGG + tig0010956:8634-8653 Msa1349430:intron 35.0%
TGTCAAAATTGCAATCTGAC+AGG + tig0010956:8672-8691 Msa1349430:intron 35.0%
!! AAATGATAGTGGAGATGAAG+AGG - tig0010956:8733-8752 Msa1349430:intergenic 35.0%
ATTAAGATGGAATGGAGCAA+TGG - tig0010956:8764-8783 Msa1349430:intergenic 35.0%
!!! CAAATTTTTGGCTTGAGCAA+AGG - tig0010956:8897-8916 Msa1349430:intergenic 35.0%
! GTAGCAAGGACTCAAATTTT+TGG - tig0010956:8909-8928 Msa1349430:intergenic 35.0%
ACATAGACTAAAGAGTAGCA+AGG - tig0010956:8923-8942 Msa1349430:intergenic 35.0%
!!! TTCCTATTTTAGGTTGCTGA+TGG + tig0010956:8957-8976 Msa1349430:intron 35.0%
TTCCATCAGCAACCTAAAAT+AGG - tig0010956:8962-8981 Msa1349430:intergenic 35.0%
CAACACATAAAAAGGAACAG+AGG + tig0010956:9620-9639 Msa1349430:intron 35.0%
! AACTTTTGCTAATGCATCTG+CGG + tig0010956:9738-9757 Msa1349430:intron 35.0%
! TGCGGGGTATTATTTATTTG+AGG + tig0010956:9756-9775 Msa1349430:intron 35.0%
!!! AGTGGCTCTTTTTTCGAAAA+TGG - tig0010956:9884-9903 Msa1349430:intergenic 35.0%
!!! ATGTCAGTTTTAAGCAGGAA+AGG + tig0010956:9952-9971 Msa1349430:CDS 35.0%
ACGGAAGAAAATGAAAGTGA+TGG + tig0010956:10089-10108 Msa1349430:CDS 35.0%
AGCATCACTGAAAATCTCAT+CGG - tig0010956:10274-10293 Msa1349430:intergenic 35.0%
GGAATATAGTCAATTATCCC+TGG + tig0010956:10299-10318 Msa1349430:CDS 35.0%
!!! TTCCATTCTTGTTTTGACCA+GGG - tig0010956:10319-10338 Msa1349430:intergenic 35.0%
AGGAGTTCCAATCTTACATA+CGG - tig0010956:10414-10433 Msa1349430:intergenic 35.0%
AATCTAAACCCTTGTGAAGT+GGG - tig0010956:10446-10465 Msa1349430:intergenic 35.0%
AAATCTAAACCCTTGTGAAG+TGG - tig0010956:10447-10466 Msa1349430:intergenic 35.0%
CTCTACCATAAATTCAAGGA+AGG - tig0010956:10607-10626 Msa1349430:intergenic 35.0%
ACAAAATCCTTTCCATCTTC+AGG - tig0010956:10695-10714 Msa1349430:intergenic 35.0%
! CAACCTTTTCCACCAAATTT+GGG - tig0010956:10751-10770 Msa1349430:intergenic 35.0%
AGCAATGGGAAACTTCATAA+TGG - tig0010956:10787-10806 Msa1349430:intergenic 35.0%
ATTATGAAGTTTCCCATTGC+TGG + tig0010956:10786-10805 Msa1349430:CDS 35.0%
TTATGAAGTTTCCCATTGCT+GGG + tig0010956:10787-10806 Msa1349430:CDS 35.0%
TGATGCTGTTGCTAAACTTA+CGG + tig0010956:10931-10950 Msa1349430:CDS 35.0%
GAGAAATATTTGCCTTTGGA+AGG + tig0010956:11222-11241 Msa1349430:CDS 35.0%
TTGCAAATATGTCCTTCCAA+AGG - tig0010956:11237-11256 Msa1349430:intergenic 35.0%
!! TCTGATATGCTTCTAAAGTG+AGG - tig0010956:11313-11332 Msa1349430:intergenic 35.0%
!! CGGATTATTGATTCCCTATA+TGG + tig0010956:11364-11383 Msa1349430:CDS 35.0%
! AGTTTTTGTGAAATTGGTGG+TGG + tig0010956:11446-11465 Msa1349430:intron 35.0%
ATTAGCCCCCAAATTATTTC+TGG - tig0010956:11550-11569 Msa1349430:intergenic 35.0%
AGAAATAATTTGGGGGCTAA+TGG + tig0010956:11549-11568 Msa1349430:intron 35.0%
GAAATAATTTGGGGGCTAAT+GGG + tig0010956:11550-11569 Msa1349430:intron 35.0%
AAATAATTTGGGGGCTAATG+GGG + tig0010956:11551-11570 Msa1349430:intron 35.0%
TGGCATGATCATATTCATTG+AGG - tig0010956:11948-11967 Msa1349430:intergenic 35.0%
TCAATGAATATGATCATGCC+AGG + tig0010956:11947-11966 Msa1349430:CDS 35.0%
AACATAGTCTCTTGGTATGT+TGG + tig0010956:12033-12052 Msa1349430:three_prime_UTR 35.0%
ACATAGTCTCTTGGTATGTT+GGG + tig0010956:12034-12053 Msa1349430:three_prime_UTR 35.0%
ATACTCCTGATAAGGTCAAA+AGG - tig0010956:12105-12124 Msa1349430:intergenic 35.0%
!! TGCTTAATTTGTCACTGCAA+CGG + tig0010956:12206-12225 Msa1349430:three_prime_UTR 35.0%
CATATGTACCATCTCACTTT+CGG + tig0010956:12255-12274 Msa1349430:intron 35.0%
ATATGTACCATCTCACTTTC+GGG + tig0010956:12256-12275 Msa1349430:intron 35.0%
AGAACACCATTGCTACAAAT+TGG - tig0010956:12546-12565 Msa1349430:intergenic 35.0%
!!! TTGCTGTATTTTGACTCTGT+TGG + tig0010956:12635-12654 Msa1349430:intron 35.0%
GCACAGTATTTATGTTCTTG+AGG + tig0010956:12724-12743 Msa1349430:three_prime_UTR 35.0%
CAGTATTTATGTTCTTGAGG+TGG + tig0010956:12727-12746 Msa1349430:three_prime_UTR 35.0%
! AATTGGTAGTTCTATTGGGT+TGG - tig0010956:12949-12968 Msa1349430:intergenic 35.0%
ACCCAATAGAACTACCAATT+AGG + tig0010956:12949-12968 Msa1349430:three_prime_UTR 35.0%
! CCCTAATTGGTAGTTCTATT+GGG - tig0010956:12953-12972 Msa1349430:intergenic 35.0%
CCCAATAGAACTACCAATTA+GGG + tig0010956:12950-12969 Msa1349430:three_prime_UTR 35.0%
! ACCCTAATTGGTAGTTCTAT+TGG - tig0010956:12954-12973 Msa1349430:intergenic 35.0%
CTCCAAAACATTGTAGTCTA+GGG - tig0010956:13057-13076 Msa1349430:intergenic 35.0%
!! CTAGACTACAATGTTTTGGA+GGG + tig0010956:13056-13075 Msa1349430:three_prime_UTR 35.0%
!!! TGGTTTTTTAGGTTTAGGGG+CGG - tig0010956:5781-5800 Msa1349430:intergenic 40.0%
!!! GGGTGGTTTTTTAGGTTTAG+GGG - tig0010956:5784-5803 Msa1349430:intergenic 40.0%
TTGTGAGAGGAAGAAGAAGA+GGG - tig0010956:5897-5916 Msa1349430:intergenic 40.0%
TTTGTGAGAGGAAGAAGAAG+AGG - tig0010956:5898-5917 Msa1349430:intergenic 40.0%
AGATGAAATAGGACGAGAAG+CGG - tig0010956:6060-6079 Msa1349430:intergenic 40.0%
! GGTTTGGGTTCAGATGAAAT+AGG - tig0010956:6071-6090 Msa1349430:intergenic 40.0%
! ACAATAACCGGTTCAGAAGA+AGG - tig0010956:6092-6111 Msa1349430:intergenic 40.0%
! GTTGGATTCTGAAGAAAACG+GGG + tig0010956:6151-6170 Msa1349430:CDS 40.0%
! AAGCGAGATTTGCTTCTGTT+GGG + tig0010956:6180-6199 Msa1349430:CDS 40.0%
!!! GGGAAAGATTCGTTTTTTCC+TGG + tig0010956:6212-6231 Msa1349430:CDS 40.0%
!!! TTCGTTTTTTCCTGGTGAAG+AGG + tig0010956:6220-6239 Msa1349430:CDS 40.0%
GCTTTAATATCCTCTTCACC+AGG - tig0010956:6233-6252 Msa1349430:intergenic 40.0%
TTAAAGCAGCTAAGGCTAAG+AGG + tig0010956:6246-6265 Msa1349430:CDS 40.0%
TAAAGCAGCTAAGGCTAAGA+GGG + tig0010956:6247-6266 Msa1349430:CDS 40.0%
TGCACCCGATTATATTTCGT+TGG + tig0010956:6295-6314 Msa1349430:CDS 40.0%
CCCGATTATATTTCGTTGGA+TGG + tig0010956:6299-6318 Msa1349430:CDS 40.0%
!! TTGGATGGTGGAAGTAATCA+TGG + tig0010956:6314-6333 Msa1349430:CDS 40.0%
!!! AGAGAAGAAGGGTGTTTTTG+AGG + tig0010956:6415-6434 Msa1349430:CDS 40.0%
GAAGAAGAGCAGTGTAAGAA+AGG + tig0010956:6509-6528 Msa1349430:CDS 40.0%
AGAGCAGTGTAAGAAAGGAT+TGG + tig0010956:6514-6533 Msa1349430:CDS 40.0%
! AGAAAGGATTGGTGAAGAGA+AGG + tig0010956:6525-6544 Msa1349430:CDS 40.0%
! GAAAGGATTGGTGAAGAGAA+GGG + tig0010956:6526-6545 Msa1349430:CDS 40.0%
CCATACACATTTGCAACAGA+AGG - tig0010956:6629-6648 Msa1349430:intergenic 40.0%
CCTTCTGTTGCAAATGTGTA+TGG + tig0010956:6626-6645 Msa1349430:CDS 40.0%
ATGCTGCTGCTACAACATTT+GGG - tig0010956:6658-6677 Msa1349430:intergenic 40.0%
AAATGTTGTAGCAGCAGCAT+CGG + tig0010956:6658-6677 Msa1349430:CDS 40.0%
AAGCTATGCTGGACAATGTT+AGG + tig0010956:6765-6784 Msa1349430:CDS 40.0%
CAGCCTGATACAAATGAGTT+TGG - tig0010956:6824-6843 Msa1349430:intergenic 40.0%
! TTTGTATCAGGCTGAGCTTT+TGG + tig0010956:6830-6849 Msa1349430:intron 40.0%
GGATCAAATTTGCCTAGTGT+AGG + tig0010956:7051-7070 Msa1349430:intron 40.0%
AATTTGCCTAGTGTAGGTTG+AGG + tig0010956:7057-7076 Msa1349430:intron 40.0%
! ATTTGCCTAGTGTAGGTTGA+GGG + tig0010956:7058-7077 Msa1349430:intron 40.0%
ATGCTTGTACTGTGGCTATT+AGG + tig0010956:7158-7177 Msa1349430:intron 40.0%
TGCTTGTACTGTGGCTATTA+GGG + tig0010956:7159-7178 Msa1349430:intron 40.0%
ATCACAAACAGAGTGTGTGT+GGG - tig0010956:7342-7361 Msa1349430:intergenic 40.0%
CAGACTGCATCATATGATAC+AGG - tig0010956:7388-7407 Msa1349430:intergenic 40.0%
CACACAAAACAACCGTCAAT+AGG + tig0010956:7661-7680 Msa1349430:intron 40.0%
! AAGTCTTATCCCACTAAGTG+GGG - tig0010956:7783-7802 Msa1349430:intergenic 40.0%
! CAAAGTCTTATCCCACTAAG+TGG - tig0010956:7785-7804 Msa1349430:intergenic 40.0%
CACTTAGTGGGATAAGACTT+TGG + tig0010956:7783-7802 Msa1349430:intron 40.0%
! TGTGATTCCTGTCATTTGTG+GGG - tig0010956:7870-7889 Msa1349430:intergenic 40.0%
! CATGTGATTCCTGTCATTTG+TGG - tig0010956:7872-7891 Msa1349430:intergenic 40.0%
CACAAATGACAGGAATCACA+TGG + tig0010956:7870-7889 Msa1349430:intron 40.0%
AAACACTTACGAGTTTAGGC+AGG + tig0010956:8392-8411 Msa1349430:intron 40.0%
!! GGTGAATTTGTTGTCCAAAG+TGG + tig0010956:8551-8570 Msa1349430:intron 40.0%
! CAACTCTTCTAGAAGTCAGT+AGG + tig0010956:8825-8844 Msa1349430:intron 40.0%
GTCTAAATCTCTCAAGCCAT+AGG - tig0010956:9047-9066 Msa1349430:intergenic 40.0%
TGAGAGATTTAGACCCTGTT+TGG + tig0010956:9053-9072 Msa1349430:intron 40.0%
!! CCAATTTTCGAGCTTATAGC+GGG - tig0010956:9327-9346 Msa1349430:intergenic 40.0%
!! GCCAATTTTCGAGCTTATAG+CGG - tig0010956:9328-9347 Msa1349430:intergenic 40.0%
TTTCAGCTCCTAAGACTGTT+TGG - tig0010956:9355-9374 Msa1349430:intergenic 40.0%
ACATAGAAAGGAATGAGGAG+AGG - tig0010956:9396-9415 Msa1349430:intergenic 40.0%
GCAACACATAGAAAGGAATG+AGG - tig0010956:9401-9420 Msa1349430:intergenic 40.0%
! ACTTTTGCTAATGCATCTGC+GGG + tig0010956:9739-9758 Msa1349430:intron 40.0%
CATTTCGTCGTCATTGTTAG+TGG - tig0010956:9902-9921 Msa1349430:intergenic 40.0%
CACTAACAATGACGACGAAA+TGG + tig0010956:9900-9919 Msa1349430:CDS 40.0%
!!! CTGCAATGTCAGTTTTAAGC+AGG + tig0010956:9947-9966 Msa1349430:CDS 40.0%
GAAAATGAAAGTGATGGCTG+AGG + tig0010956:10095-10114 Msa1349430:CDS 40.0%
! TTCTAAAAAGTCGGCATCCA+TGG + tig0010956:10149-10168 Msa1349430:CDS 40.0%
ATATCAGTCACAGCGAGATT+TGG + tig0010956:10236-10255 Msa1349430:CDS 40.0%
! GATTTTCAGTGATGCTTCTG+AGG + tig0010956:10278-10297 Msa1349430:CDS 40.0%
ATCCCTGGTCAAAACAAGAA+TGG + tig0010956:10314-10333 Msa1349430:CDS 40.0%
!!! CTTCCATTCTTGTTTTGACC+AGG - tig0010956:10320-10339 Msa1349430:intergenic 40.0%
CTTCTCTCCGTATGTAAGAT+TGG + tig0010956:10404-10423 Msa1349430:CDS 40.0%
ATGTAAGATTGGAACTCCTG+AGG + tig0010956:10415-10434 Msa1349430:CDS 40.0%
CCACATGAAGTGTAATGAAG+TGG - tig0010956:10574-10593 Msa1349430:intergenic 40.0%
CCACTTCATTACACTTCATG+TGG + tig0010956:10571-10590 Msa1349430:intron 40.0%
! ACTTATGGATTGCCTGAAGA+TGG + tig0010956:10680-10699 Msa1349430:CDS 40.0%
! TGTCCCAAATTTGGTGGAAA+AGG + tig0010956:10745-10764 Msa1349430:CDS 40.0%
! GCAACCTTTTCCACCAAATT+TGG - tig0010956:10752-10771 Msa1349430:intergenic 40.0%
CTGTTGCTAAACTTACGGTA+TGG + tig0010956:10936-10955 Msa1349430:intron 40.0%
TCCATCTTGTCTTGTGTTGT+AGG + tig0010956:11111-11130 Msa1349430:intron 40.0%
ACCTACAACACAAGACAAGA+TGG - tig0010956:11115-11134 Msa1349430:intergenic 40.0%
TTGATTCCCTATATGGCGTT+TGG + tig0010956:11371-11390 Msa1349430:CDS 40.0%
TGATTCCCTATATGGCGTTT+GGG + tig0010956:11372-11391 Msa1349430:CDS 40.0%
! TTTTGTCTCCAGTGACACTT+GGG - tig0010956:11402-11421 Msa1349430:intergenic 40.0%
! TTTTTGTCTCCAGTGACACT+TGG - tig0010956:11403-11422 Msa1349430:intergenic 40.0%
GGCTGCAACAAAAATAGAGA+AGG - tig0010956:11816-11835 Msa1349430:intergenic 40.0%
TCTGGAGAGAAGAAATGTAC+AGG + tig0010956:11882-11901 Msa1349430:CDS 40.0%
!! CAAGGAGGCATTATGAGTTT+AGG + tig0010956:11993-12012 Msa1349430:exon 40.0%
CATAGTCTCTTGGTATGTTG+GGG + tig0010956:12035-12054 Msa1349430:three_prime_UTR 40.0%
! TCTGAAGTACTCACTTGAGA+AGG - tig0010956:12079-12098 Msa1349430:intergenic 40.0%
! GATAGCCTTTTGACCTTATC+AGG + tig0010956:12097-12116 Msa1349430:three_prime_UTR 40.0%
!! GCTTAATTTGTCACTGCAAC+GGG + tig0010956:12207-12226 Msa1349430:three_prime_UTR 40.0%
TATGTACCATCTCACTTTCG+GGG + tig0010956:12257-12276 Msa1349430:intron 40.0%
AGGGATCACAGTTATAGCAA+TGG - tig0010956:12320-12339 Msa1349430:intergenic 40.0%
GTTCGAGTGGAGTTTATTTC+CGG + tig0010956:12451-12470 Msa1349430:intron 40.0%
TTTCGAAGCCTTAAGCTTGA+AGG + tig0010956:12586-12605 Msa1349430:intron 40.0%
ATGTGATATGTAGCCCAGTT+TGG + tig0010956:12700-12719 Msa1349430:three_prime_UTR 40.0%
TAAATACTGTGCGCCAAACT+GGG - tig0010956:12716-12735 Msa1349430:intergenic 40.0%
ATAAATACTGTGCGCCAAAC+TGG - tig0010956:12717-12736 Msa1349430:intergenic 40.0%
ATTTATGTTCTTGAGGTGGC+TGG + tig0010956:12731-12750 Msa1349430:three_prime_UTR 40.0%
TTTATGTTCTTGAGGTGGCT+GGG + tig0010956:12732-12751 Msa1349430:three_prime_UTR 40.0%
! GTGATGAAATTCGGAGCATT+TGG + tig0010956:12801-12820 Msa1349430:three_prime_UTR 40.0%
AGAACTACCAATTAGGGTTG+AGG + tig0010956:12956-12975 Msa1349430:three_prime_UTR 40.0%
GAACTACCAATTAGGGTTGA+GGG + tig0010956:12957-12976 Msa1349430:three_prime_UTR 40.0%
! GTCCCTAGACTACAATGTTT+TGG + tig0010956:13052-13071 Msa1349430:three_prime_UTR 40.0%
CCTCCAAAACATTGTAGTCT+AGG - tig0010956:13058-13077 Msa1349430:intergenic 40.0%
!! CCTAGACTACAATGTTTTGG+AGG + tig0010956:13055-13074 Msa1349430:three_prime_UTR 40.0%
!!! TTTTTAGGTTTAGGGGCGGA+GGG - tig0010956:5777-5796 Msa1349430:intergenic 45.0%
!!! TTTTTTAGGTTTAGGGGCGG+AGG - tig0010956:5778-5797 Msa1349430:intergenic 45.0%
AGGAAGAAGAAGAGGGTTTG+GGG - tig0010956:5890-5909 Msa1349430:intergenic 45.0%
GAGGAAGAAGAAGAGGGTTT+GGG - tig0010956:5891-5910 Msa1349430:intergenic 45.0%
AGAGGAAGAAGAAGAGGGTT+TGG - tig0010956:5892-5911 Msa1349430:intergenic 45.0%
! GTGAGTGGTGATTTTGTGAG+AGG - tig0010956:5910-5929 Msa1349430:intergenic 45.0%
ACATTGGAAGGTGAAGGTGA+AGG - tig0010956:5957-5976 Msa1349430:intergenic 45.0%
GGTTGAACATTGGAAGGTGA+AGG - tig0010956:5963-5982 Msa1349430:intergenic 45.0%
GCTTGAGGTTGAACATTGGA+AGG - tig0010956:5969-5988 Msa1349430:intergenic 45.0%
TCCAATGTTCAACCTCAAGC+TGG + tig0010956:5969-5988 Msa1349430:CDS 45.0%
ACCAGCTTGAGGTTGAACAT+TGG - tig0010956:5973-5992 Msa1349430:intergenic 45.0%
!! ACGAAGTGCTTCTAAGGTGT+AGG - tig0010956:5997-6016 Msa1349430:intergenic 45.0%
! AAGCTCACGAAGTGCTTCTA+AGG - tig0010956:6003-6022 Msa1349430:intergenic 45.0%
ACCCAAACCTTCTTCTGAAC+CGG + tig0010956:6082-6101 Msa1349430:CDS 45.0%
! ACCGGTTCAGAAGAAGGTTT+GGG - tig0010956:6086-6105 Msa1349430:intergenic 45.0%
! AACCGGTTCAGAAGAAGGTT+TGG - tig0010956:6087-6106 Msa1349430:intergenic 45.0%
! GAAGCGAGATTTGCTTCTGT+TGG + tig0010956:6179-6198 Msa1349430:CDS 45.0%
TCCCACCAAACATTGCAATC+CGG - tig0010956:6382-6401 Msa1349430:intergenic 45.0%
! TGCAATGTTTGGTGGGAAGA+AGG + tig0010956:6385-6404 Msa1349430:CDS 45.0%
! GCAATGTTTGGTGGGAAGAA+GGG + tig0010956:6386-6405 Msa1349430:CDS 45.0%
AAGGGAGATGGAGAGAAGAA+GGG + tig0010956:6404-6423 Msa1349430:CDS 45.0%
!!! GAAGGGTGTTTTTGAGGTTG+CGG + tig0010956:6421-6440 Msa1349430:CDS 45.0%
!!! TTTTTGAGGTTGCGGATGAG+AGG + tig0010956:6429-6448 Msa1349430:CDS 45.0%
TTGGTGAAGAGAAGGGATGA+AGG + tig0010956:6533-6552 Msa1349430:CDS 45.0%
TGGTGAAGAGAAGGGATGAA+GGG + tig0010956:6534-6553 Msa1349430:CDS 45.0%
TGTTGAGCAACTTGCACAAC+AGG - tig0010956:6590-6609 Msa1349430:intergenic 45.0%
! GCTCAACAGCCCAATTTTGT+TGG + tig0010956:6602-6621 Msa1349430:CDS 45.0%
GATGCTGCTGCTACAACATT+TGG - tig0010956:6659-6678 Msa1349430:intergenic 45.0%
!!! AATCCCAGCAACACCGATTT+TGG + tig0010956:6703-6722 Msa1349430:CDS 45.0%
!! CATCCAAAATCGGTGTTGCT+GGG - tig0010956:6709-6728 Msa1349430:intergenic 45.0%
!! ACATCCAAAATCGGTGTTGC+TGG - tig0010956:6710-6729 Msa1349430:intergenic 45.0%
CTATGCTGGACAATGTTAGG+AGG + tig0010956:6768-6787 Msa1349430:CDS 45.0%
GGACAATGTTAGGAGGCTTA+AGG + tig0010956:6775-6794 Msa1349430:CDS 45.0%
! TTTGCCTAGTGTAGGTTGAG+GGG + tig0010956:7059-7078 Msa1349430:intron 45.0%
TTGCTGTCATGCTTGTACTG+TGG + tig0010956:7150-7169 Msa1349430:intron 45.0%
! CTGTGGCTATTAGGGTTAGT+TGG + tig0010956:7167-7186 Msa1349430:intron 45.0%
!! GCTATTAGGGTTAGTTGGCT+GGG + tig0010956:7172-7191 Msa1349430:intron 45.0%
GTCGATGTGCTTTGCAATCA+AGG + tig0010956:7205-7224 Msa1349430:intron 45.0%
GATCACAAACAGAGTGTGTG+TGG - tig0010956:7343-7362 Msa1349430:intergenic 45.0%
!! ATTTTACAACCCTCTGGCTC+TGG - tig0010956:7466-7485 Msa1349430:intergenic 45.0%
! GTGATTCCTGTCATTTGTGG+GGG - tig0010956:7869-7888 Msa1349430:intergenic 45.0%
!! ATGGTAGTGGAAAGGCTTTG+TGG + tig0010956:8242-8261 Msa1349430:intron 45.0%
ACTTACGAGTTTAGGCAGGT+AGG + tig0010956:8396-8415 Msa1349430:intron 45.0%
CATACATGTCCCTACCACTT+TGG - tig0010956:8568-8587 Msa1349430:intergenic 45.0%
AGTGATAAGCTCTGCTGTCA+AGG - tig0010956:8700-8719 Msa1349430:intergenic 45.0%
TAATTCCCTTGCTGGACCTA+TGG + tig0010956:9028-9047 Msa1349430:intron 45.0%
CCCGCTATAAGCTCGAAAAT+TGG + tig0010956:9324-9343 Msa1349430:intron 45.0%
! CTTTTGCTAATGCATCTGCG+GGG + tig0010956:9740-9759 Msa1349430:intron 45.0%
CAATGACGACGAAATGGTTG+AGG + tig0010956:9906-9925 Msa1349430:CDS 45.0%
CCAAACTCATCTAACTGCAC+TGG - tig0010956:10048-10067 Msa1349430:intergenic 45.0%
CCAGTGCAGTTAGATGAGTT+TGG + tig0010956:10045-10064 Msa1349430:CDS 45.0%
GAAGATCAGTGGAAGACTCA+CGG - tig0010956:10388-10407 Msa1349430:intergenic 45.0%
ACATACGGAGAGAAGATCAG+TGG - tig0010956:10399-10418 Msa1349430:intergenic 45.0%
TAAGATTGGAACTCCTGAGG+TGG + tig0010956:10418-10437 Msa1349430:CDS 45.0%
AAGATTGGAACTCCTGAGGT+GGG + tig0010956:10419-10438 Msa1349430:CDS 45.0%
TGGATTGCCTGAAGATGGAA+AGG + tig0010956:10685-10704 Msa1349430:CDS 45.0%
! CCAAATTTGGGACAAGCTCA+AGG - tig0010956:10739-10758 Msa1349430:intergenic 45.0%
CCTTGAGCTTGTCCCAAATT+TGG + tig0010956:10736-10755 Msa1349430:CDS 45.0%
TGAGCTTGTCCCAAATTTGG+TGG + tig0010956:10739-10758 Msa1349430:CDS 45.0%
ACTAAGCATGTCCCAGCAAT+GGG - tig0010956:10801-10820 Msa1349430:intergenic 45.0%
CGAAACTAGCAGATCTGCAA+GGG - tig0010956:10894-10913 Msa1349430:intergenic 45.0%
TCGAAACTAGCAGATCTGCA+AGG - tig0010956:10895-10914 Msa1349430:intergenic 45.0%
TTGTGTTGTAGGTCCCTACA+TGG + tig0010956:11122-11141 Msa1349430:intron 45.0%
!! GTACTAGTGGACTCCATGTA+GGG - tig0010956:11138-11157 Msa1349430:intergenic 45.0%
!! AGTACTAGTGGACTCCATGT+AGG - tig0010956:11139-11158 Msa1349430:intergenic 45.0%
ATGGGGTGGGATATTCGTTA+AGG + tig0010956:11568-11587 Msa1349430:intron 45.0%
TGGGGTGGGATATTCGTTAA+GGG + tig0010956:11569-11588 Msa1349430:intron 45.0%
GGGATTAGAGTAGAGGTTGT+AGG + tig0010956:11620-11639 Msa1349430:intron 45.0%
! GCTGTCACTTGGAAAGATTC+TGG + tig0010956:11864-11883 Msa1349430:CDS 45.0%
ATATGATCATGCCAGGACCA+TGG + tig0010956:11954-11973 Msa1349430:CDS 45.0%
TAATGCCTCCTTGAGATGGA+AGG - tig0010956:11986-12005 Msa1349430:intergenic 45.0%
CTCATAATGCCTCCTTGAGA+TGG - tig0010956:11990-12009 Msa1349430:intergenic 45.0%
TCTTGGTATGTTGGGGAGTT+CGG + tig0010956:12042-12061 Msa1349430:three_prime_UTR 45.0%
! TCATACACAAAGCCGACTCT+GGG - tig0010956:12148-12167 Msa1349430:intergenic 45.0%
! TTCATACACAAAGCCGACTC+TGG - tig0010956:12149-12168 Msa1349430:intergenic 45.0%
! GGCTTTGTGTATGAACTTGC+TGG + tig0010956:12154-12173 Msa1349430:three_prime_UTR 45.0%
AAGCCTTAAGCTTGAAGGCA+GGG + tig0010956:12591-12610 Msa1349430:intron 45.0%
TAACCCTGCCTTCAAGCTTA+AGG - tig0010956:12597-12616 Msa1349430:intergenic 45.0%
! ATCACATTCTTGCTGTCTGC+AGG - tig0010956:12687-12706 Msa1349430:intergenic 45.0%
! AATTCGGAGCATTTGGTACG+AGG + tig0010956:12808-12827 Msa1349430:three_prime_UTR 45.0%
TACCAATTAGGGTTGAGGGA+TGG + tig0010956:12961-12980 Msa1349430:three_prime_UTR 45.0%
TTCCATCCCTCAACCCTAAT+TGG - tig0010956:12966-12985 Msa1349430:intergenic 45.0%
AATTAGGGTTGAGGGATGGA+AGG + tig0010956:12965-12984 Msa1349430:three_prime_UTR 45.0%
ACACACACGAGGGAAACGAA+AGG + tig0010956:5550-5569 Msa1349430:five_prime_UTR 50.0%
CACACACGAGGGAAACGAAA+GGG + tig0010956:5551-5570 Msa1349430:five_prime_UTR 50.0%
ACACACGAGGGAAACGAAAG+GGG + tig0010956:5552-5571 Msa1349430:five_prime_UTR 50.0%
ACGGAAATTGCGGGATTTGG+CGG - tig0010956:5700-5719 Msa1349430:intergenic 50.0%
TCGGCGAAGCTGAGAAGTTT+GGG - tig0010956:5804-5823 Msa1349430:intergenic 50.0%
TGGACGAGGGGTTTCGTTAT+CGG - tig0010956:5841-5860 Msa1349430:intergenic 50.0%
AAGAAGAAGAGGGTTTGGGG+CGG - tig0010956:5887-5906 Msa1349430:intergenic 50.0%
AAGGTGTAGGTACCAGCTTG+AGG - tig0010956:5984-6003 Msa1349430:intergenic 50.0%
AGCGGTTGTAGGAGTGACTA+GGG - tig0010956:6042-6061 Msa1349430:intergenic 50.0%
AAGCGGTTGTAGGAGTGACT+AGG - tig0010956:6043-6062 Msa1349430:intergenic 50.0%
ATAGGACGAGAAGCGGTTGT+AGG - tig0010956:6053-6072 Msa1349430:intergenic 50.0%
TAAACCGGTGACGTCTGAAC+CGG + tig0010956:6127-6146 Msa1349430:CDS 50.0%
TGGAAGTAATCATGGCGCTG+CGG + tig0010956:6322-6341 Msa1349430:CDS 50.0%
AGAGGCCGGATTGCAATGTT+TGG + tig0010956:6374-6393 Msa1349430:CDS 50.0%
GCCGGATTGCAATGTTTGGT+GGG + tig0010956:6378-6397 Msa1349430:CDS 50.0%
TTTGGTGGGAAGAAGGGAGA+TGG + tig0010956:6392-6411 Msa1349430:CDS 50.0%
GAAGGGAGATGGAGAGAAGA+AGG + tig0010956:6403-6422 Msa1349430:CDS 50.0%
GGATGAGAGGTTTGTCGATG+TGG + tig0010956:6442-6461 Msa1349430:CDS 50.0%
TGAGAGGTTTGTCGATGTGG+TGG + tig0010956:6445-6464 Msa1349430:CDS 50.0%
! TGTCGATGTGGTGGTTGATG+AGG + tig0010956:6454-6473 Msa1349430:CDS 50.0%
AGGATGAGGAGGAAGGATTG+TGG + tig0010956:6486-6505 Msa1349430:CDS 50.0%
GGATGAGGAGGAAGGATTGT+GGG + tig0010956:6487-6506 Msa1349430:CDS 50.0%
AAGGGATGAAGGGTCTGCTT+GGG + tig0010956:6544-6563 Msa1349430:CDS 50.0%
CATCGGCGAATACCAGCATT+GGG + tig0010956:6675-6694 Msa1349430:CDS 50.0%
ATCGGCGAATACCAGCATTG+GGG + tig0010956:6676-6695 Msa1349430:CDS 50.0%
AGAACCCCTCAACCTACACT+AGG - tig0010956:7066-7085 Msa1349430:intergenic 50.0%
! TAGTGTAGGTTGAGGGGTTC+TGG + tig0010956:7065-7084 Msa1349430:intron 50.0%
!! GGCTATTAGGGTTAGTTGGC+TGG + tig0010956:7171-7190 Msa1349430:intron 50.0%
!! TTAGGGTTAGTTGGCTGGGA+TGG + tig0010956:7176-7195 Msa1349430:intron 50.0%
CCATTGCAACTCAGATGCTG+CGG + tig0010956:7258-7277 Msa1349430:intron 50.0%
TGTTTGTGATCCAGAGCCAG+AGG + tig0010956:7352-7371 Msa1349430:intron 50.0%
GTTTGTGATCCAGAGCCAGA+GGG + tig0010956:7353-7372 Msa1349430:intron 50.0%
TACAGGCGTTTACAACCCTC+TGG - tig0010956:7371-7390 Msa1349430:intergenic 50.0%
ACTAAGTGGGGTCAGCTACA+TGG - tig0010956:7771-7790 Msa1349430:intergenic 50.0%
ATGTAGCTGACCCCACTTAG+TGG + tig0010956:7770-7789 Msa1349430:intron 50.0%
TGTAGCTGACCCCACTTAGT+GGG + tig0010956:7771-7790 Msa1349430:intron 50.0%
TTGTGTCCCCCACAAATGAC+AGG + tig0010956:7860-7879 Msa1349430:intron 50.0%
TCAAGCCATAGGTCCAGCAA+GGG - tig0010956:9036-9055 Msa1349430:intergenic 50.0%
! TGGCCTTGCCAAACAGTCTT+AGG + tig0010956:9344-9363 Msa1349430:intron 50.0%
GCTCCTAAGACTGTTTGGCA+AGG - tig0010956:9350-9369 Msa1349430:intergenic 50.0%
AAGCAGGAAAGGTGACAACG+TGG + tig0010956:9963-9982 Msa1349430:CDS 50.0%
! TGAGAGTGATAGTGAGAGCC+AGG + tig0010956:10212-10231 Msa1349430:CDS 50.0%
GACTAAGCATGTCCCAGCAA+TGG - tig0010956:10802-10821 Msa1349430:intergenic 50.0%
GGAACAGCAGCTAGTACTAG+TGG - tig0010956:11151-11170 Msa1349430:intergenic 50.0%
! GCTGCAATTTTTGCAGCGTC+TGG - tig0010956:11172-11191 Msa1349430:intergenic 50.0%
TAATTTGGGGGCTAATGGGG+TGG + tig0010956:11554-11573 Msa1349430:intron 50.0%
AATTTGGGGGCTAATGGGGT+GGG + tig0010956:11555-11574 Msa1349430:intron 50.0%
GGTTAGGGGGATTAGAGTAG+AGG + tig0010956:11613-11632 Msa1349430:intron 50.0%
CCACCAGAGGTTGCAATTTG+CGG - tig0010956:11837-11856 Msa1349430:intergenic 50.0%
GTGGCTTATGTGCTGTCACT+TGG + tig0010956:11853-11872 Msa1349430:CDS 50.0%
CTCCTTGAGATGGAAGGTTC+TGG - tig0010956:11980-11999 Msa1349430:intergenic 50.0%
CAGAACCTTCCATCTCAAGG+AGG + tig0010956:11978-11997 Msa1349430:CDS 50.0%
CACTTGAGAAGGCTAACCCT+GGG - tig0010956:12068-12087 Msa1349430:intergenic 50.0%
TCACTTGAGAAGGCTAACCC+TGG - tig0010956:12069-12088 Msa1349430:intergenic 50.0%
GCATCTTTCACTCCCAGAGT+CGG + tig0010956:12133-12152 Msa1349430:three_prime_UTR 50.0%
GAAGCCTTAAGCTTGAAGGC+AGG + tig0010956:12590-12609 Msa1349430:intron 50.0%
GCTTGAAGGCAGGGTTAGAA+AGG + tig0010956:12600-12619 Msa1349430:intron 50.0%
! TGCCTGCAAGGATTTGAAGC+TGG + tig0010956:12758-12777 Msa1349430:three_prime_UTR 50.0%
AGCCAGCTTCAAATCCTTGC+AGG - tig0010956:12763-12782 Msa1349430:intergenic 50.0%
TCGTTTCCCTCGTGTGTGTC+TGG - tig0010956:5549-5568 Msa0796610:intergenic 55.0%
GGCGGTGGTGAAAGGTTGTT+TGG - tig0010956:5670-5689 Msa1349430:intergenic 55.0%
GAAATTGCGGGATTTGGCGG+AGG - tig0010956:5697-5716 Msa1349430:intergenic 55.0%
GCGACGGAAATTGCGGGATT+TGG - tig0010956:5703-5722 Msa1349430:intergenic 55.0%
!! AGTTAGTGTCGGTACGGCGA+CGG - tig0010956:5719-5738 Msa1349430:intergenic 55.0%
!! CGTCGGAGTTAGTGTCGGTA+CGG - tig0010956:5725-5744 Msa1349430:intergenic 55.0%
GTCGTCGTCGGAGTTAGTGT+CGG - tig0010956:5730-5749 Msa1349430:intergenic 55.0%
TTTGGAAGGGACGGTGGTTG+GGG - tig0010956:5754-5773 Msa1349430:intergenic 55.0%
GTTTGGAAGGGACGGTGGTT+GGG - tig0010956:5755-5774 Msa1349430:intergenic 55.0%
GCGAAGCTGAGAAGTTTGGG+TGG - tig0010956:5801-5820 Msa1349430:intergenic 55.0%
GTCGGCGAAGCTGAGAAGTT+TGG - tig0010956:5805-5824 Msa1349430:intergenic 55.0%
!! ATCGGCGTCGATTTCGTCGT+CGG - tig0010956:5823-5842 Msa1349430:intergenic 55.0%
AACTCCGGTTCAGACGTCAC+CGG - tig0010956:6134-6153 Msa1349430:intergenic 55.0%
CAGCTAAGGCTAAGAGGGAG+AGG + tig0010956:6252-6271 Msa1349430:CDS 55.0%
AGGCTAAGAGGGAGAGGATG+CGG + tig0010956:6258-6277 Msa1349430:CDS 55.0%
TAAGAGGGAGAGGATGCGGA+AGG + tig0010956:6262-6281 Msa1349430:CDS 55.0%
ATAATCGGGTGCAGCAGCAC+CGG - tig0010956:6288-6307 Msa1349430:intergenic 55.0%
AAGTAATCATGGCGCTGCGG+AGG + tig0010956:6325-6344 Msa1349430:CDS 55.0%
AGTAATCATGGCGCTGCGGA+GGG + tig0010956:6326-6345 Msa1349430:CDS 55.0%
GACGAGGAACCGGAGTATAG+AGG + tig0010956:6356-6375 Msa1349430:CDS 55.0%
AGGAACCGGAGTATAGAGGC+CGG + tig0010956:6360-6379 Msa1349430:CDS 55.0%
GCAATCCGGCCTCTATACTC+CGG - tig0010956:6368-6387 Msa1349430:intergenic 55.0%
GGCCGGATTGCAATGTTTGG+TGG + tig0010956:6377-6396 Msa1349430:CDS 55.0%
!! CGATGTGGTGGTTGATGAGG+AGG + tig0010956:6457-6476 Msa1349430:CDS 55.0%
!! GGTGGTTGATGAGGAGGATG+AGG + tig0010956:6463-6482 Msa1349430:CDS 55.0%
!! GGTTGATGAGGAGGATGAGG+AGG + tig0010956:6466-6485 Msa1349430:CDS 55.0%
TGAGGAGGATGAGGAGGATG+AGG + tig0010956:6472-6491 Msa1349430:CDS 55.0%
GATGAGGAGGATGAGGAGGA+AGG + tig0010956:6470-6489 Msa1349430:CDS 55.0%
GAAGGGATGAAGGGTCTGCT+TGG + tig0010956:6543-6562 Msa1349430:CDS 55.0%
GATGAAGGGTCTGCTTGGGT+GGG + tig0010956:6548-6567 Msa1349430:CDS 55.0%
! GCATCGGCGAATACCAGCAT+TGG + tig0010956:6674-6693 Msa1349430:CDS 55.0%
! TCGGCGAATACCAGCATTGG+GGG + tig0010956:6677-6696 Msa1349430:CDS 55.0%
! GGTTGAGGGGTTCTGGCAAT+TGG + tig0010956:7072-7091 Msa1349430:intron 55.0%
CCGCAGCATCTGAGTTGCAA+TGG - tig0010956:7261-7280 Msa1349430:intergenic 55.0%
! CGTTTACAACCCTCTGGCTC+TGG - tig0010956:7365-7384 Msa1349430:intergenic 55.0%
! CTGGATCACAGAGAGTGCGT+GGG - tig0010956:7447-7466 Msa1349430:intergenic 55.0%
! TCTGGATCACAGAGAGTGCG+TGG - tig0010956:7448-7467 Msa1349430:intergenic 55.0%
TCTCTGTGATCCAGAGCCAG+AGG + tig0010956:7453-7472 Msa1349430:intron 55.0%
CTCTGTGATCCAGAGCCAGA+GGG + tig0010956:7454-7473 Msa1349430:intron 55.0%
CTCAAGCCATAGGTCCAGCA+AGG - tig0010956:9037-9056 Msa1349430:intergenic 55.0%
CAGGAAAGGTGACAACGTGG+AGG + tig0010956:9966-9985 Msa1349430:CDS 55.0%
TGCATCCTGAGCTGCACTTC+TGG - tig0010956:9995-10014 Msa1349430:intergenic 55.0%
CTCGCTGTGACTGATATGCC+TGG - tig0010956:10233-10252 Msa1349430:intergenic 55.0%
!! ACAGCGAGATTTGGTGCTGC+AGG + tig0010956:10245-10264 Msa1349430:CDS 55.0%
AGGTGGGACCCACTTCACAA+GGG + tig0010956:10435-10454 Msa1349430:CDS 55.0%
TCCCTATATGGCGTTTGGGC+TGG + tig0010956:11376-11395 Msa1349430:CDS 55.0%
GCCAGCCCAAACGCCATATA+GGG - tig0010956:11380-11399 Msa1349430:intergenic 55.0%
GGCCTACTTGACACCTCCAT+CGG + tig0010956:11590-11609 Msa1349430:intron 55.0%
GCCTACTTGACACCTCCATC+GGG + tig0010956:11591-11610 Msa1349430:intron 55.0%
CCTACTTGACACCTCCATCG+GGG + tig0010956:11592-11611 Msa1349430:intron 55.0%
TTGACACCTCCATCGGGGTT+AGG + tig0010956:11597-11616 Msa1349430:intron 55.0%
TGACACCTCCATCGGGGTTA+GGG + tig0010956:11598-11617 Msa1349430:intron 55.0%
TCTAATCCCCCTAACCCCGA+TGG - tig0010956:11609-11628 Msa1349430:intergenic 55.0%
CAGCCGCAAATTGCAACCTC+TGG + tig0010956:11831-11850 Msa1349430:intron 55.0%
CCGCAAATTGCAACCTCTGG+TGG + tig0010956:11834-11853 Msa1349430:CDS 55.0%
GACAGCACATAAGCCACCAG+AGG - tig0010956:11850-11869 Msa1349430:intergenic 55.0%
! GAGATGGAAGGTTCTGGCCA+TGG - tig0010956:11974-11993 Msa1349430:intergenic 55.0%
GGCCAGAACCTTCCATCTCA+AGG + tig0010956:11975-11994 Msa1349430:CDS 55.0%
ACTGCACCCCGAAAGTGAGA+TGG - tig0010956:12266-12285 Msa1349430:intergenic 55.0%
ATCTCACTTTCGGGGTGCAG+TGG + tig0010956:12265-12284 Msa1349430:intron 55.0%
TCTCACTTTCGGGGTGCAGT+GGG + tig0010956:12266-12285 Msa1349430:intron 55.0%
GAGGACATGGCGGTGGTGAA+AGG - tig0010956:5678-5697 Msa1349430:intergenic 60.0%
GGATTTGGCGGAGGACATGG+CGG - tig0010956:5688-5707 Msa1349430:intergenic 60.0%
GGTACGGCGACGGAAATTGC+GGG - tig0010956:5709-5728 Msa1349430:intergenic 60.0%
CGGTACGGCGACGGAAATTG+CGG - tig0010956:5710-5729 Msa1349430:intergenic 60.0%
GGTTTGGAAGGGACGGTGGT+TGG - tig0010956:5756-5775 Msa1349430:intergenic 60.0%
TAGGGGCGGAGGGTTTGGAA+GGG - tig0010956:5767-5786 Msa1349430:intergenic 60.0%
TTAGGGGCGGAGGGTTTGGA+AGG - tig0010956:5768-5787 Msa1349430:intergenic 60.0%
AGGTTTAGGGGCGGAGGGTT+TGG - tig0010956:5772-5791 Msa1349430:intergenic 60.0%
! TTTGGAGGAGCGTGGACGAG+GGG - tig0010956:5853-5872 Msa1349430:intergenic 60.0%
! GTTTGGAGGAGCGTGGACGA+GGG - tig0010956:5854-5873 Msa1349430:intergenic 60.0%
! AAGAAGAGGGTTTGGGGCGG+TGG - tig0010956:5884-5903 Msa1349430:intergenic 60.0%
GGTGACGTCTGAACCGGAGT+TGG + tig0010956:6133-6152 Msa1349430:CDS 60.0%
GTAATCATGGCGCTGCGGAG+GGG + tig0010956:6327-6346 Msa1349430:CDS 60.0%
GGGGTTGAGTGACGAGGAAC+CGG + tig0010956:6346-6365 Msa1349430:CDS 60.0%
GGAGGATGAGGAGGATGAGG+AGG + tig0010956:6475-6494 Msa1349430:CDS 60.0%
GGATGAAGGGTCTGCTTGGG+TGG + tig0010956:6547-6566 Msa1349430:CDS 60.0%
TGGGATTGCTCCCCCAATGC+TGG - tig0010956:6690-6709 Msa1349430:intergenic 60.0%
TGTGAAGTGGGTCCCACCTC+AGG - tig0010956:10434-10453 Msa1349430:intergenic 60.0%
GAGGTGGGACCCACTTCACA+AGG + tig0010956:10434-10453 Msa1349430:CDS 60.0%
GGCCAGCCCAAACGCCATAT+AGG - tig0010956:11381-11400 Msa1349430:intergenic 60.0%
!! CCCCGATGGAGGTGTCAAGT+AGG - tig0010956:11595-11614 Msa1349430:intergenic 60.0%
GACACCTCCATCGGGGTTAG+GGG + tig0010956:11599-11618 Msa1349430:intron 60.0%
ACACCTCCATCGGGGTTAGG+GGG + tig0010956:11600-11619 Msa1349430:intron 60.0%
AATCCCCCTAACCCCGATGG+AGG - tig0010956:11606-11625 Msa1349430:intergenic 60.0%
! GAAGGTTCTGGCCATGGTCC+TGG - tig0010956:11968-11987 Msa1349430:intergenic 60.0%
TATGTTGGGGAGTTCGGCCC+AGG + tig0010956:12048-12067 Msa1349430:three_prime_UTR 60.0%
ATGTTGGGGAGTTCGGCCCA+GGG + tig0010956:12049-12068 Msa1349430:three_prime_UTR 60.0%
GTGGCTGGGATTTGCCTGCA+AGG + tig0010956:12746-12765 Msa1349430:three_prime_UTR 60.0%
TTTGGCGGAGGACATGGCGG+TGG - tig0010956:5685-5704 Msa1349430:intergenic 65.0%
GCGGGATTTGGCGGAGGACA+TGG - tig0010956:5691-5710 Msa1349430:intergenic 65.0%
!! GGTGGTTGGGGTGTCGTCGT+CGG - tig0010956:5742-5761 Msa1349430:intergenic 65.0%
GGAGGGTTTGGAAGGGACGG+TGG - tig0010956:5760-5779 Msa1349430:intergenic 65.0%
GGCGGAGGGTTTGGAAGGGA+CGG - tig0010956:5763-5782 Msa1349430:intergenic 65.0%
! GGTTTGGAGGAGCGTGGACG+AGG - tig0010956:5855-5874 Msa1349430:intergenic 65.0%
TGGTGGGGTTTGGAGGAGCG+TGG - tig0010956:5861-5880 Msa1349430:intergenic 65.0%
! AAGAGGGTTTGGGGCGGTGG+TGG - tig0010956:5881-5900 Msa1349430:intergenic 65.0%
AGGGAGAGGATGCGGAAGGC+CGG + tig0010956:6266-6285 Msa1349430:CDS 65.0%
TGCGGAGGGGTTGAGTGACG+AGG + tig0010956:6340-6359 Msa1349430:CDS 65.0%
GAAGGGTCTGCTTGGGTGGG+TGG + tig0010956:6551-6570 Msa1349430:CDS 65.0%
! TCTGCTTGGGTGGGTGGTGG+TGG + tig0010956:6557-6576 Msa1349430:CDS 65.0%
! GGCTGCCAGAAGTGCAGCTC+AGG + tig0010956:9987-10006 Msa1349430:CDS 65.0%
TGGCTGAGGCTCGTCAACGC+AGG + tig0010956:10109-10128 Msa1349430:CDS 65.0%
CTGAGGCTCGTCAACGCAGG+AGG + tig0010956:10112-10131 Msa1349430:CDS 65.0%
!! TGGGCTGGCCCAAGTGTCAC+TGG + tig0010956:11391-11410 Msa1349430:CDS 65.0%
!! GCGGTGGTGGTGGGGTTTGG+AGG - tig0010956:5868-5887 Msa1349430:intergenic 70.0%
! GGTTTGGGGCGGTGGTGGTG+GGG - tig0010956:5876-5895 Msa1349430:intergenic 70.0%
! GGGTTTGGGGCGGTGGTGGT+GGG - tig0010956:5877-5896 Msa1349430:intergenic 70.0%
! AGGGTTTGGGGCGGTGGTGG+TGG - tig0010956:5878-5897 Msa1349430:intergenic 70.0%
GGGTCTGCTTGGGTGGGTGG+TGG + tig0010956:6554-6573 Msa1349430:CDS 70.0%
!! GGGGCGGTGGTGGTGGGGTT+TGG - tig0010956:5871-5890 Msa1349430:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0010956 gene 5545 13089 5545 ID=Msa1349430;Name=Msa1349430
tig0010956 mRNA 5545 13089 5545 ID=Msa1349430-mRNA-1;Parent=Msa1349430;Name=Msa1349430-mRNA-1;_AED=0.08;_eAED=0.08;_QI=145|1|1|1|0.83|0.71|7|637|898
tig0010956 exon 5545 6796 5545 ID=Msa1349430-mRNA-1:exon:6919;Parent=Msa1349430-mRNA-1
tig0010956 exon 7882 8049 7882 ID=Msa1349430-mRNA-1:exon:6920;Parent=Msa1349430-mRNA-1
tig0010956 exon 9814 10481 9814 ID=Msa1349430-mRNA-1:exon:6921;Parent=Msa1349430-mRNA-1
tig0010956 exon 10664 10952 10664 ID=Msa1349430-mRNA-1:exon:6922;Parent=Msa1349430-mRNA-1
tig0010956 exon 11133 11422 11133 ID=Msa1349430-mRNA-1:exon:6923;Parent=Msa1349430-mRNA-1
tig0010956 exon 11834 12228 11834 ID=Msa1349430-mRNA-1:exon:6924;Parent=Msa1349430-mRNA-1
tig0010956 exon 12673 13089 12673 ID=Msa1349430-mRNA-1:exon:6925;Parent=Msa1349430-mRNA-1
tig0010956 five_prime_UTR 5545 5689 5545 ID=Msa1349430-mRNA-1:five_prime_utr;Parent=Msa1349430-mRNA-1
tig0010956 CDS 5690 6796 5690 ID=Msa1349430-mRNA-1:cds;Parent=Msa1349430-mRNA-1
tig0010956 CDS 7882 8049 7882 ID=Msa1349430-mRNA-1:cds;Parent=Msa1349430-mRNA-1
tig0010956 CDS 9814 10481 9814 ID=Msa1349430-mRNA-1:cds;Parent=Msa1349430-mRNA-1
tig0010956 CDS 10664 10952 10664 ID=Msa1349430-mRNA-1:cds;Parent=Msa1349430-mRNA-1
tig0010956 CDS 11133 11422 11133 ID=Msa1349430-mRNA-1:cds;Parent=Msa1349430-mRNA-1
tig0010956 CDS 11834 12008 11834 ID=Msa1349430-mRNA-1:cds;Parent=Msa1349430-mRNA-1
tig0010956 three_prime_UTR 12009 12228 12009 ID=Msa1349430-mRNA-1:three_prime_utr;Parent=Msa1349430-mRNA-1
tig0010956 three_prime_UTR 12673 13089 12673 ID=Msa1349430-mRNA-1:three_prime_utr;Parent=Msa1349430-mRNA-1
Gene Sequence

>Msa1349430

ATGTCCTCCGCCAAATCCCGCAATTTCCGTCGCCGTACCGACACTAACTCCGACGACGACACCCCAACCACCGTCCCTTCCAAACCCTCCGCCCCTAAACCTAAAAAACCACCCAAACTTCTCAGCTTCGCCGACGACGAAATCGACGCCGATAACGAAACCCCTCGTCCACGCTCCTCCAAACCCCACCACCACCGCCCCAAACCCTCTTCTTCTTCCTCTCACAAAATCACCACTCACAAAAACAGAATAGTTTCACATTCTCCTTCACCTTCACCTTCCAATGTTCAACCTCAAGCTGGTACCTACACCTTAGAAGCACTTCGTGAGCTTCAGAAGAATACAAGAACCCTAGTCACTCCTACAACCGCTTCTCGTCCTATTTCATCTGAACCCAAACCTTCTTCTGAACCGGTTATTGTTTTAAAGGGTTTGCTTAAACCGGTGACGTCTGAACCGGAGTTGGATTCTGAAGAAAACGGGGAATTTGAAGCGAGATTTGCTTCTGTTGGGATTAAAAATGGGAAAGATTCGTTTTTTCCTGGTGAAGAGGATATTAAAGCAGCTAAGGCTAAGAGGGAGAGGATGCGGAAGGCCGGTGCTGCTGCACCCGATTATATTTCGTTGGATGGTGGAAGTAATCATGGCGCTGCGGAGGGGTTGAGTGACGAGGAACCGGAGTATAGAGGCCGGATTGCAATGTTTGGTGGGAAGAAGGGAGATGGAGAGAAGAAGGGTGTTTTTGAGGTTGCGGATGAGAGGTTTGTCGATGTGGTGGTTGATGAGGAGGATGAGGAGGATGAGGAGGAAGGATTGTGGGAAGAAGAGCAGTGTAAGAAAGGATTGGTGAAGAGAAGGGATGAAGGGTCTGCTTGGGTGGGTGGTGGTGGTGAAGTTCCTGTTGTGCAAGTTGCTCAACAGCCCAATTTTGTTGGTCCTTCTGTTGCAAATGTGTATGGTGCAGTCCCAAATGTTGTAGCAGCAGCATCGGCGAATACCAGCATTGGGGGAGCAATCCCAGCAACACCGATTTTGGATGTCATTCCTATATCTCAACAAGCTGAGATTGCAAAAAAAGCTATGCTGGACAATGTTAGGAGGCTTAAGGAATCACATGGAAGAACAATGTCATCATTGATCAAAACAGATGAAAATTTGTCTGCCTCCCTTTTGAAGATTACTGATCTTGAAAACTCATTAGTGGTAGCTGACGAGAAGTACAGATTTATGCAAAAGCTCCGAAATTATATCTCAAATATATGCGACTTTTTACAGCATAAAGCTTACTACATTGAAGAACTTGAAGATCAGATGAAGAAGCTTCACGAAGATCGAGCATCAGCCATTTTCGAAAAAAGAGCCACTAACAATGACGACGAAATGGTTGAGGTAGAAGCAGCTGTGAAAGCTGCAATGTCAGTTTTAAGCAGGAAAGGTGACAACGTGGAGGCTGCCAGAAGTGCAGCTCAGGATGCATTTGCTGCTGTCAGAAAACAAAGAGATTTTCCAGTGCAGTTAGATGAGTTTGGTAGAGATTTAAATCTTGAGAAACGGAAGAAAATGAAAGTGATGGCTGAGGCTCGTCAACGCAGGAGGTCTAAAGCTTTTGATTCTAAAAAGTCGGCATCCATGGAAATAGATGATCATAAAGTAGAGGGTGAATCAAGCACTGATGAGAGTGATAGTGAGAGCCAGGCATATCAGTCACAGCGAGATTTGGTGCTGCAGGCTGCCGATGAGATTTTCAGTGATGCTTCTGAGGAATATAGTCAATTATCCCTGGTCAAAACAAGAATGGAAGAATGGAAAAGAGAGTATTCGTCAAGCTATAATGATGCTTATATTTCCGTGAGTCTTCCACTGATCTTCTCTCCGTATGTAAGATTGGAACTCCTGAGGTGGGACCCACTTCACAAGGGTTTAGATTTTCAAGATATGAAATGGTATAAATTGTTATTCACTTATGGATTGCCTGAAGATGGAAAGGATTTTGTTCATGATGATGGAGATGCTGACCTTGAGCTTGTCCCAAATTTGGTGGAAAAGGTTGCACTTCCTATTCTCCATTATGAAGTTTCCCATTGCTGGGACATGCTTAGTCAACAAGAGACAATGAATGCTATTGCTGCTACAAAGTTGATTGTGCAGCATGTGTCTCATAAAAGTGAAGCCCTTGCAGATCTGCTAGTTTCGATTCGTACACGTCTAGCTGATGCTGTTGCTAAACTTACGGTCCCTACATGGAGTCCACTAGTACTAGCTGCTGTTCCAGACGCTGCAAAAATTGCAGCATATCGATTTGGTGTGTCTGTTCGACTACTGAGAAATATTTGCCTTTGGAAGGACATATTTGCAATGTCAGTGTTAGAGAAGCTTGCTCTAGATGAGCTTTTGTACGCAAAAGTTCTACCTCACTTTAGAAGCATATCAGAAAATGTTCAAGATGCAATAACAAGAACAGAACGGATTATTGATTCCCTATATGGCGTTTGGGCTGGCCCAAGTGTCACTGGAGACAAAAACCGCAAATTGCAACCTCTGGTGGCTTATGTGCTGTCACTTGGAAAGATTCTGGAGAGAAGAAATGTACAGGAGAGTGATCTAGCTCGTCGATTAAAGAGAATACTTGTTGACCTCAATGAATATGATCATGCCAGGACCATGGCCAGAACCTTCCATCTCAAGGAGGCATTATGA
Protein sequence

>Msa1349430

MSSAKSRNFRRRTDTNSDDDTPTTVPSKPSAPKPKKPPKLLSFADDEIDADNETPRPRSSKPHHHRPKPSSSSSHKITTHKNRIVSHSPSPSPSNVQPQAGTYTLEALRELQKNTRTLVTPTTASRPISSEPKPSSEPVIVLKGLLKPVTSEPELDSEENGEFEARFASVGIKNGKDSFFPGEEDIKAAKAKRERMRKAGAAAPDYISLDGGSNHGAAEGLSDEEPEYRGRIAMFGGKKGDGEKKGVFEVADERFVDVVVDEEDEEDEEEGLWEEEQCKKGLVKRRDEGSAWVGGGGEVPVVQVAQQPNFVGPSVANVYGAVPNVVAAASANTSIGGAIPATPILDVIPISQQAEIAKKAMLDNVRRLKESHGRTMSSLIKTDENLSASLLKITDLENSLVVADEKYRFMQKLRNYISNICDFLQHKAYYIEELEDQMKKLHEDRASAIFEKRATNNDDEMVEVEAAVKAAMSVLSRKGDNVEAARSAAQDAFAAVRKQRDFPVQLDEFGRDLNLEKRKKMKVMAEARQRRRSKAFDSKKSASMEIDDHKVEGESSTDESDSESQAYQSQRDLVLQAADEIFSDASEEYSQLSLVKTRMEEWKREYSSSYNDAYISVSLPLIFSPYVRLELLRWDPLHKGLDFQDMKWYKLLFTYGLPEDGKDFVHDDGDADLELVPNLVEKVALPILHYEVSHCWDMLSQQETMNAIAATKLIVQHVSHKSEALADLLVSIRTRLADAVAKLTVPTWSPLVLAAVPDAAKIAAYRFGVSVRLLRNICLWKDIFAMSVLEKLALDELLYAKVLPHFRSISENVQDAITRTERIIDSLYGVWAGPSVTGDKNRKLQPLVAYVLSLGKILERRNVQESDLARRLKRILVDLNEYDHARTMARTFHLKEAL*