AlfalfaGEDB | Msa1349430

M. sativa cultivar zhongmu-4 / Msa1349430

KEGG: K13211
GO: GO:0000122 GO:0000375 GO:0000377 GO:0000398 GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000982 GO:0000987 GO:0001012 GO:0001067 GO:0001078 GO:0001227 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0017148 GO:0019219 GO:0019222 GO:0022402 GO:0030371 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044464 GO:0044786 GO:0045182 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2001141
PFAM: PF15458.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1349430	XP_003610832.1	96.437	898	26	1	1	898	1	892	0.0	1767

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1349430	sp\|Q9FNN3\|ILP1_ARATH	51.277	940	384	24	1	898	1	908	0.0	815

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1349430	G7K6F2	96.437	898	26	1	1	898	1	892	0.0	1767

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002560	Msa1349430	0.832070	1.165624e-55	-8.615850e-47
Msa0023330	Msa1349430	0.836564	8.691111e-57	-8.615850e-47
Msa0031180	Msa1349430	0.814317	1.638486e-51	-8.615850e-47
Msa0037120	Msa1349430	0.840271	9.616669e-58	-8.615850e-47
Msa0054820	Msa1349430	0.800801	1.215632e-48	-8.615850e-47
Msa0055660	Msa1349430	0.807222	5.615290e-50	-8.615850e-47
Msa0064920	Msa1349430	0.808792	2.602510e-50	-8.615850e-47
Msa0078480	Msa1349430	0.809865	1.531923e-50	-8.615850e-47
Msa0084340	Msa1349430	0.839902	1.200322e-57	-8.615850e-47
Msa0116080	Msa1349430	0.800158	1.643168e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1349430	MtrunA17_Chr5g0395361	96.437	898	26	1	1	898	1	892	0.0	1767

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1349430	AT5G08550.1	51.277	940	384	24	1	898	1	908	0.0	815
Msa1349430	AT5G09210.1	51.084	323	148	4	544	861	252	569	2.60e-101	328

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Find 301 sgRNAs with CRISPR-Local

Find 600 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGCAGCATATCGATT+TGG	0.390099	tig0010956:+11181	Msa1349430:CDS
AAACCCTTTAAAACAATAAC+CGG	0.393611	tig0010956:-6101	Msa1349430:intergenic
AAATCATGATACTCCTGATA+AGG	0.489257	tig0010956:-12110	Msa1349430:intergenic
AAATCTAAACCCTTGTGAAG+TGG	0.570577	tig0010956:-10444	Msa1349430:intergenic
AAATGTTGTAGCAGCAGCAT+CGG	0.570378	tig0010956:+6658	Msa1349430:CDS
AACAGAAGGACCAACAAAAT+TGG	0.225072	tig0010956:-6612	Msa1349430:intergenic
AACATAGTCTCTTGGTATGT+TGG	0.388105	tig0010956:+12033	Msa1349430:three_prime_UTR
AACCGGTTCAGAAGAAGGTT+TGG	0.384290	tig0010956:-6084	Msa1349430:intergenic
AACTCCGGTTCAGACGTCAC+CGG	0.617418	tig0010956:-6131	Msa1349430:intergenic
AACTTAAAACAGGTTAAGGT+TGG	0.468518	tig0010956:-12999	Msa1349430:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTCTGTTGGGATTAAAAAT+GGG	+	tig0010956:6192-6211	Msa1349430:CDS	30.0%
ACCATCCAACGAAATATAAT+CGG	-	tig0010956:6303-6322	Msa1349430:intergenic	30.0%
ATAGGAATGACATCCAAAAT+CGG	-	tig0010956:6719-6738	Msa1349430:intergenic	30.0%
AATTAATGATCTCATGCACA+TGG	+	tig0010956:6863-6882	Msa1349430:intron	30.0%
AAAAAGCAAGTACCTATTGA+CGG	-	tig0010956:7676-7695	Msa1349430:intergenic	30.0%
TGGTTTATGTGAGAATGTTA+TGG	+	tig0010956:7734-7753	Msa1349430:intron	30.0%
CAAGATCAGTAATCTTCAAA+AGG	-	tig0010956:7944-7963	Msa1349430:intergenic	30.0%
TGATCTTGAAAACTCATTAG+TGG	+	tig0010956:7956-7975	Msa1349430:CDS	30.0%
CGTACAAAATTACTTATCGA+AGG	+	tig0010956:8125-8144	Msa1349430:intron	30.0%
CAACATCAACCAATTTAGAA+TGG	-	tig0010956:8519-8538	Msa1349430:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0010956	gene	5545	13089	5545	ID=Msa1349430;Name=Msa1349430
tig0010956	mRNA	5545	13089	5545	ID=Msa1349430-mRNA-1;Parent=Msa1349430;Name=Msa1349430-mRNA-1;_AED=0.08;_eAED=0.08;_QI=145\|1\|1\|1\|0.83\|0.71\|7\|637\|898
tig0010956	exon	5545	6796	5545	ID=Msa1349430-mRNA-1:exon:6919;Parent=Msa1349430-mRNA-1
tig0010956	exon	7882	8049	7882	ID=Msa1349430-mRNA-1:exon:6920;Parent=Msa1349430-mRNA-1
tig0010956	exon	9814	10481	9814	ID=Msa1349430-mRNA-1:exon:6921;Parent=Msa1349430-mRNA-1
tig0010956	exon	10664	10952	10664	ID=Msa1349430-mRNA-1:exon:6922;Parent=Msa1349430-mRNA-1
tig0010956	exon	11133	11422	11133	ID=Msa1349430-mRNA-1:exon:6923;Parent=Msa1349430-mRNA-1
tig0010956	exon	11834	12228	11834	ID=Msa1349430-mRNA-1:exon:6924;Parent=Msa1349430-mRNA-1
tig0010956	exon	12673	13089	12673	ID=Msa1349430-mRNA-1:exon:6925;Parent=Msa1349430-mRNA-1
tig0010956	five_prime_UTR	5545	5689	5545	ID=Msa1349430-mRNA-1:five_prime_utr;Parent=Msa1349430-mRNA-1
tig0010956	CDS	5690	6796	5690	ID=Msa1349430-mRNA-1:cds;Parent=Msa1349430-mRNA-1
tig0010956	CDS	7882	8049	7882	ID=Msa1349430-mRNA-1:cds;Parent=Msa1349430-mRNA-1
tig0010956	CDS	9814	10481	9814	ID=Msa1349430-mRNA-1:cds;Parent=Msa1349430-mRNA-1
tig0010956	CDS	10664	10952	10664	ID=Msa1349430-mRNA-1:cds;Parent=Msa1349430-mRNA-1
tig0010956	CDS	11133	11422	11133	ID=Msa1349430-mRNA-1:cds;Parent=Msa1349430-mRNA-1
tig0010956	CDS	11834	12008	11834	ID=Msa1349430-mRNA-1:cds;Parent=Msa1349430-mRNA-1
tig0010956	three_prime_UTR	12009	12228	12009	ID=Msa1349430-mRNA-1:three_prime_utr;Parent=Msa1349430-mRNA-1
tig0010956	three_prime_UTR	12673	13089	12673	ID=Msa1349430-mRNA-1:three_prime_utr;Parent=Msa1349430-mRNA-1

Gene Sequence

>Msa1349430

ATGTCCTCCGCCAAATCCCGCAATTTCCGTCGCCGTACCGACACTAACTCCGACGACGACACCCCAACCACCGTCCCTTCCAAACCCTCCGCCCCTAAACCTAAAAAACCACCCAAACTTCTCAGCTTCGCCGACGACGAAATCGACGCCGATAACGAAACCCCTCGTCCACGCTCCTCCAAACCCCACCACCACCGCCCCAAACCCTCTTCTTCTTCCTCTCACAAAATCACCACTCACAAAAACAGAATAGTTTCACATTCTCCTTCACCTTCACCTTCCAATGTTCAACCTCAAGCTGGTACCTACACCTTAGAAGCACTTCGTGAGCTTCAGAAGAATACAAGAACCCTAGTCACTCCTACAACCGCTTCTCGTCCTATTTCATCTGAACCCAAACCTTCTTCTGAACCGGTTATTGTTTTAAAGGGTTTGCTTAAACCGGTGACGTCTGAACCGGAGTTGGATTCTGAAGAAAACGGGGAATTTGAAGCGAGATTTGCTTCTGTTGGGATTAAAAATGGGAAAGATTCGTTTTTTCCTGGTGAAGAGGATATTAAAGCAGCTAAGGCTAAGAGGGAGAGGATGCGGAAGGCCGGTGCTGCTGCACCCGATTATATTTCGTTGGATGGTGGAAGTAATCATGGCGCTGCGGAGGGGTTGAGTGACGAGGAACCGGAGTATAGAGGCCGGATTGCAATGTTTGGTGGGAAGAAGGGAGATGGAGAGAAGAAGGGTGTTTTTGAGGTTGCGGATGAGAGGTTTGTCGATGTGGTGGTTGATGAGGAGGATGAGGAGGATGAGGAGGAAGGATTGTGGGAAGAAGAGCAGTGTAAGAAAGGATTGGTGAAGAGAAGGGATGAAGGGTCTGCTTGGGTGGGTGGTGGTGGTGAAGTTCCTGTTGTGCAAGTTGCTCAACAGCCCAATTTTGTTGGTCCTTCTGTTGCAAATGTGTATGGTGCAGTCCCAAATGTTGTAGCAGCAGCATCGGCGAATACCAGCATTGGGGGAGCAATCCCAGCAACACCGATTTTGGATGTCATTCCTATATCTCAACAAGCTGAGATTGCAAAAAAAGCTATGCTGGACAATGTTAGGAGGCTTAAGGAATCACATGGAAGAACAATGTCATCATTGATCAAAACAGATGAAAATTTGTCTGCCTCCCTTTTGAAGATTACTGATCTTGAAAACTCATTAGTGGTAGCTGACGAGAAGTACAGATTTATGCAAAAGCTCCGAAATTATATCTCAAATATATGCGACTTTTTACAGCATAAAGCTTACTACATTGAAGAACTTGAAGATCAGATGAAGAAGCTTCACGAAGATCGAGCATCAGCCATTTTCGAAAAAAGAGCCACTAACAATGACGACGAAATGGTTGAGGTAGAAGCAGCTGTGAAAGCTGCAATGTCAGTTTTAAGCAGGAAAGGTGACAACGTGGAGGCTGCCAGAAGTGCAGCTCAGGATGCATTTGCTGCTGTCAGAAAACAAAGAGATTTTCCAGTGCAGTTAGATGAGTTTGGTAGAGATTTAAATCTTGAGAAACGGAAGAAAATGAAAGTGATGGCTGAGGCTCGTCAACGCAGGAGGTCTAAAGCTTTTGATTCTAAAAAGTCGGCATCCATGGAAATAGATGATCATAAAGTAGAGGGTGAATCAAGCACTGATGAGAGTGATAGTGAGAGCCAGGCATATCAGTCACAGCGAGATTTGGTGCTGCAGGCTGCCGATGAGATTTTCAGTGATGCTTCTGAGGAATATAGTCAATTATCCCTGGTCAAAACAAGAATGGAAGAATGGAAAAGAGAGTATTCGTCAAGCTATAATGATGCTTATATTTCCGTGAGTCTTCCACTGATCTTCTCTCCGTATGTAAGATTGGAACTCCTGAGGTGGGACCCACTTCACAAGGGTTTAGATTTTCAAGATATGAAATGGTATAAATTGTTATTCACTTATGGATTGCCTGAAGATGGAAAGGATTTTGTTCATGATGATGGAGATGCTGACCTTGAGCTTGTCCCAAATTTGGTGGAAAAGGTTGCACTTCCTATTCTCCATTATGAAGTTTCCCATTGCTGGGACATGCTTAGTCAACAAGAGACAATGAATGCTATTGCTGCTACAAAGTTGATTGTGCAGCATGTGTCTCATAAAAGTGAAGCCCTTGCAGATCTGCTAGTTTCGATTCGTACACGTCTAGCTGATGCTGTTGCTAAACTTACGGTCCCTACATGGAGTCCACTAGTACTAGCTGCTGTTCCAGACGCTGCAAAAATTGCAGCATATCGATTTGGTGTGTCTGTTCGACTACTGAGAAATATTTGCCTTTGGAAGGACATATTTGCAATGTCAGTGTTAGAGAAGCTTGCTCTAGATGAGCTTTTGTACGCAAAAGTTCTACCTCACTTTAGAAGCATATCAGAAAATGTTCAAGATGCAATAACAAGAACAGAACGGATTATTGATTCCCTATATGGCGTTTGGGCTGGCCCAAGTGTCACTGGAGACAAAAACCGCAAATTGCAACCTCTGGTGGCTTATGTGCTGTCACTTGGAAAGATTCTGGAGAGAAGAAATGTACAGGAGAGTGATCTAGCTCGTCGATTAAAGAGAATACTTGTTGACCTCAATGAATATGATCATGCCAGGACCATGGCCAGAACCTTCCATCTCAAGGAGGCATTATGA

Protein sequence

>Msa1349430

MSSAKSRNFRRRTDTNSDDDTPTTVPSKPSAPKPKKPPKLLSFADDEIDADNETPRPRSSKPHHHRPKPSSSSSHKITTHKNRIVSHSPSPSPSNVQPQAGTYTLEALRELQKNTRTLVTPTTASRPISSEPKPSSEPVIVLKGLLKPVTSEPELDSEENGEFEARFASVGIKNGKDSFFPGEEDIKAAKAKRERMRKAGAAAPDYISLDGGSNHGAAEGLSDEEPEYRGRIAMFGGKKGDGEKKGVFEVADERFVDVVVDEEDEEDEEEGLWEEEQCKKGLVKRRDEGSAWVGGGGEVPVVQVAQQPNFVGPSVANVYGAVPNVVAAASANTSIGGAIPATPILDVIPISQQAEIAKKAMLDNVRRLKESHGRTMSSLIKTDENLSASLLKITDLENSLVVADEKYRFMQKLRNYISNICDFLQHKAYYIEELEDQMKKLHEDRASAIFEKRATNNDDEMVEVEAAVKAAMSVLSRKGDNVEAARSAAQDAFAAVRKQRDFPVQLDEFGRDLNLEKRKKMKVMAEARQRRRSKAFDSKKSASMEIDDHKVEGESSTDESDSESQAYQSQRDLVLQAADEIFSDASEEYSQLSLVKTRMEEWKREYSSSYNDAYISVSLPLIFSPYVRLELLRWDPLHKGLDFQDMKWYKLLFTYGLPEDGKDFVHDDGDADLELVPNLVEKVALPILHYEVSHCWDMLSQQETMNAIAATKLIVQHVSHKSEALADLLVSIRTRLADAVAKLTVPTWSPLVLAAVPDAAKIAAYRFGVSVRLLRNICLWKDIFAMSVLEKLALDELLYAKVLPHFRSISENVQDAITRTERIIDSLYGVWAGPSVTGDKNRKLQPLVAYVLSLGKILERRNVQESDLARRLKRILVDLNEYDHARTMARTFHLKEAL*