AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0795520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0795520 MtrunA17_Chr5g0397551 96.429 196 7 0 1 196 126 321 1.47e-136 384
Msa0795520 MtrunA17_Chr8g0386741 71.429 196 54 2 1 196 158 351 1.81e-89 266
Msa0795520 MtrunA17_Chr8g0349091 47.000 200 99 4 1 196 147 343 5.85e-46 154
Msa0795520 MtrunA17_Chr7g0247431 44.500 200 105 4 1 196 149 346 5.66e-41 141
Msa0795520 MtrunA17_Chr1g0179461 52.941 136 62 2 3 136 139 274 3.64e-39 137
Msa0795520 MtrunA17_Chr7g0245841 56.000 125 54 1 1 124 119 243 2.09e-35 127
Msa0795520 MtrunA17_Chr8g0351761 42.708 192 98 4 4 187 137 324 1.06e-34 125
Msa0795520 MtrunA17_Chr4g0054661 51.667 120 56 2 6 124 139 257 4.47e-33 120
Msa0795520 MtrunA17_Chr1g0188211 52.419 124 57 2 4 126 129 251 5.30e-30 112
Msa0795520 MtrunA17_Chr5g0398621 43.662 142 75 2 3 139 91 232 3.75e-29 108
Msa0795520 MtrunA17_Chr4g0027331 46.094 128 65 3 1 124 11 138 1.07e-28 104
Msa0795520 MtrunA17_Chr4g0056761 53.623 138 59 3 4 136 139 276 1.35e-28 108
Msa0795520 MtrunA17_Chr7g0274821 42.632 190 86 6 4 192 138 305 1.35e-28 109
Msa0795520 MtrunA17_Chr4g0027371 46.774 124 62 3 4 123 14 137 4.26e-28 105
Msa0795520 MtrunA17_Chr6g0476061 45.113 133 72 1 3 134 124 256 6.58e-28 107
Msa0795520 MtrunA17_Chr1g0190011 41.667 156 76 5 7 160 107 249 1.24e-27 106
Msa0795520 MtrunA17_Chr4g0027351 48.718 117 56 3 4 118 14 128 4.70e-27 100
Msa0795520 MtrunA17_Chr5g0427311 39.683 126 71 4 1 123 72 195 4.98e-21 87.0
Msa0795520 MtrunA17_Chr5g0417581 38.655 119 70 3 1 117 11 128 2.97e-20 84.0
Msa0795520 MtrunA17_Chr3g0133051 38.462 117 70 2 9 123 101 217 1.10e-18 81.6
Msa0795520 MtrunA17_Chr4g0027301 41.026 117 65 3 6 118 23 139 4.53e-18 77.0
Msa0795520 MtrunA17_Chr5g0398531 37.324 142 79 3 5 145 123 255 1.16e-16 76.6
Msa0795520 MtrunA17_Chr5g0443311 35.971 139 81 2 5 143 74 204 3.07e-16 74.7
Msa0795520 MtrunA17_Chr8g0351651 41.525 118 65 2 7 123 111 225 4.14e-16 74.7
Msa0795520 MtrunA17_Chr1g0168121 40.708 113 63 3 12 123 72 181 6.44e-15 71.2
Msa0795520 MtrunA17_Chr3g0112131 39.831 118 67 3 7 123 104 218 6.74e-15 71.6
Msa0795520 MtrunA17_Chr1g0190051 37.589 141 78 4 7 146 99 230 7.21e-15 71.2
Msa0795520 MtrunA17_Chr6g0476241 37.500 144 80 5 3 145 171 305 8.12e-15 71.2
Msa0795520 MtrunA17_Chr4g0054651 37.391 115 64 2 12 123 106 215 1.51e-14 70.5
Msa0795520 MtrunA17_Chr7g0250031 45.455 66 36 0 12 77 87 152 2.02e-14 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0795520 AT1G63470.1 55.450 211 78 5 1 196 169 378 3.20e-63 200
Msa0795520 AT1G63480.5 54.144 181 70 3 1 169 146 325 2.83e-55 179
Msa0795520 AT1G63480.7 54.144 181 70 3 1 169 146 325 2.83e-55 179
Msa0795520 AT1G63480.4 54.144 181 70 3 1 169 146 325 2.83e-55 179
Msa0795520 AT1G63480.3 54.144 181 70 3 1 169 146 325 2.83e-55 179
Msa0795520 AT1G63480.6 54.144 181 70 3 1 169 146 325 2.83e-55 179
Msa0795520 AT1G63480.2 54.144 181 70 3 1 169 152 331 2.89e-55 179
Msa0795520 AT1G63480.1 54.144 181 70 3 1 169 152 331 2.89e-55 179
Msa0795520 AT2G45850.1 46.569 204 92 6 1 196 154 348 7.88e-50 165
Msa0795520 AT2G45850.2 46.569 204 92 6 1 196 154 348 7.88e-50 165
Msa0795520 AT4G12080.1 55.072 138 57 2 4 136 165 302 3.16e-44 150
Msa0795520 AT3G61310.1 43.781 201 106 3 1 196 156 354 1.41e-41 144
Msa0795520 AT2G33620.1 56.154 130 55 2 4 131 158 287 1.09e-40 141
Msa0795520 AT2G33620.4 56.154 130 55 2 4 131 158 287 1.09e-40 141
Msa0795520 AT2G33620.2 56.154 130 55 2 4 131 158 287 1.09e-40 141
Msa0795520 AT2G33620.3 56.154 130 55 2 4 131 158 287 1.09e-40 141
Msa0795520 AT2G45850.3 55.645 124 54 1 1 123 154 277 2.19e-39 136
Msa0795520 AT5G51590.1 53.333 120 55 1 8 126 177 296 6.35e-37 133
Msa0795520 AT4G25320.1 50.000 122 60 1 6 126 163 284 2.00e-35 128
Msa0795520 AT5G62260.1 50.000 120 59 1 6 124 157 276 1.42e-34 126
Msa0795520 AT5G62260.3 50.000 120 59 1 6 124 157 276 1.42e-34 126
Msa0795520 AT4G00200.2 54.074 135 57 2 9 138 123 257 1.24e-33 122
Msa0795520 AT4G00200.1 54.074 135 57 2 9 138 123 257 1.24e-33 122
Msa0795520 AT3G04590.1 47.059 119 59 2 6 123 168 283 4.89e-33 120
Msa0795520 AT5G62260.2 47.500 120 62 1 6 124 157 276 8.77e-33 119
Msa0795520 AT3G04590.2 47.059 119 59 2 6 123 168 283 1.28e-32 121
Msa0795520 AT4G17950.1 43.137 153 80 3 1 150 213 361 2.31e-32 121
Msa0795520 AT4G22770.2 46.452 155 71 3 3 156 144 287 8.53e-32 117
Msa0795520 AT4G22770.1 46.452 155 71 3 3 156 144 287 8.53e-32 117
Msa0795520 AT5G46640.1 48.855 131 66 1 4 133 175 305 4.29e-28 108
Msa0795520 AT3G60870.1 41.880 117 62 3 8 123 85 196 3.40e-18 80.5
Msa0795520 AT2G36560.1 37.190 121 73 3 6 123 102 222 1.06e-17 80.9
Msa0795520 AT1G76500.1 39.344 122 61 3 12 123 102 220 3.25e-16 75.5
Msa0795520 AT5G49700.1 33.600 125 68 4 9 123 83 202 1.26e-14 70.9
Msa0795520 AT5G28590.1 34.839 155 70 5 3 156 24 148 7.56e-14 67.8
Msa0795520 AT1G14490.1 35.294 119 72 3 10 123 31 149 1.07e-13 67.0
Msa0795520 AT3G04570.1 35.200 125 71 2 7 123 105 227 1.34e-13 68.2
Msa0795520 AT4G14465.1 43.662 71 40 0 7 77 92 162 1.66e-13 67.8
Msa0795520 AT1G14490.2 35.000 120 73 3 9 123 49 168 2.02e-13 66.6
Msa0795520 AT2G35270.1 35.652 115 66 2 12 123 108 217 4.23e-13 66.6
Msa0795520 AT2G45430.1 32.692 156 90 4 5 155 112 257 4.49e-13 66.6
Msa0795520 AT4G12050.1 40.496 121 67 3 5 123 141 258 6.90e-13 66.2
Msa0795520 AT4G22810.1 39.024 123 68 3 5 123 128 247 1.47e-12 65.5
Msa0795520 AT3G55560.1 39.823 113 65 3 12 123 118 228 3.27e-12 64.3
Msa0795520 AT4G17800.1 34.783 115 67 2 12 123 112 221 5.39e-12 63.5
Msa0795520 AT2G42940.1 39.823 113 66 1 12 124 83 193 7.01e-12 62.8

Find 52 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACCAGATAAGCATAATATT+TGG 0.258954 5_3:+7461860 None:intergenic
TTCCAAATATTATGCTTATC+TGG 0.278941 5_3:-7461862 Msa0795520:CDS
AATCAAAACTATACAGCTTC+TGG 0.279195 5_3:-7461107 Msa0795520:CDS
TGATTAGGTGGCTCACTTCC+TGG 0.283204 5_3:+7461125 None:intergenic
CTTCTGGAACAGGCACAATT+TGG 0.301053 5_3:-7461091 Msa0795520:CDS
TGTTGCTTCCTTCCACTTCC+CGG 0.301637 5_3:+7463808 None:intergenic
ATGCTTATCTGGTTCTTACT+TGG 0.339032 5_3:-7461851 Msa0795520:CDS
GAACGGGTGAAAGTTTATTC+AGG 0.376058 5_3:-7461009 Msa0795520:exon
AATTACCTCTTGAGCTTCAA+TGG 0.384245 5_3:+7463035 None:intergenic
TCTTACTTGGTTGCTGAAGA+TGG 0.386193 5_3:-7461838 Msa0795520:CDS
AACTATACAGCTTCTGGAAC+AGG 0.388590 5_3:-7461101 Msa0795520:CDS
TTTATCCCTTCTAAGGTGAA+TGG 0.390199 5_3:-7463101 Msa0795520:intron
AGTACGGATGGTCATGTTAT+CGG 0.434375 5_3:-7461772 Msa0795520:CDS
TAGTGTTTCCCTTTCTAGTA+CGG 0.442988 5_3:-7461788 Msa0795520:CDS
GATGAACAGTTCAGCTGGAC+AGG 0.447850 5_3:-7463079 Msa0795520:CDS
AATTAAGAATATACCTGGAC+AGG 0.469513 5_3:+7461718 None:intergenic
CATGACCATCCGTACTAGAA+AGG 0.475896 5_3:+7461779 None:intergenic
TATTGCTGCAAGCCCTGTCC+AGG 0.478697 5_3:-7461731 Msa0795520:intron
CTGGTATTGATTTGATGAAC+GGG 0.480347 5_3:-7461025 Msa0795520:CDS
ATGACCATCCGTACTAGAAA+GGG 0.483763 5_3:+7461780 None:intergenic
TTATCGGTGGTGGTGTTGCT+AGG 0.492524 5_3:-7461756 Msa0795520:CDS
CAGTGTCAGTGTTACATATG+AGG 0.494038 5_3:-7462214 Msa0795520:intron
GGTGGACCTCACAATAGAAC+TGG 0.506766 5_3:-7461817 Msa0795520:CDS
GAATGGATGAACAGTTCAGC+TGG 0.511176 5_3:-7463084 Msa0795520:exon
GCACAATTTGGCATGGATCA+AGG 0.525254 5_3:-7461079 Msa0795520:CDS
TGAAACTCTAGGTAAAATAG+AGG 0.527313 5_3:-7460811 Msa0795520:three_prime_UTR
AGTGACAAATTAGCTTCTCC+AGG 0.534618 5_3:-7461143 Msa0795520:CDS
GTTTCCCTTTCTAGTACGGA+TGG 0.539742 5_3:-7461784 Msa0795520:CDS
GTGCAAAGAAATGAAACTCT+AGG 0.541757 5_3:-7460822 Msa0795520:three_prime_UTR
TGATTCGTTTGTTACAGCAT+AGG 0.543040 5_3:+7460873 None:intergenic
AAGCAACAGCTAGCTGCTCT+AGG 0.543103 5_3:-7463793 Msa0795520:intron
GTAGTTTGCAGCTTTGTGTA+CGG 0.556100 5_3:-7461236 Msa0795520:CDS
CTCATATGTAACACTGACAC+TGG 0.565778 5_3:+7462215 None:intergenic
TACTTGGTTGCTGAAGATGG+TGG 0.568880 5_3:-7461835 Msa0795520:CDS
GGAACAGGCACAATTTGGCA+TGG 0.571731 5_3:-7461086 Msa0795520:CDS
ACTCTAGGTAAAATAGAGGC+CGG 0.582374 5_3:-7460807 Msa0795520:three_prime_UTR
TATCACCATTGAAGCTCAAG+AGG 0.586931 5_3:-7463040 Msa0795520:intron
ACACTGACACTGGTAGAAGC+AGG 0.587023 5_3:+7462225 None:intergenic
GATGGTCATGTTATCGGTGG+TGG 0.597066 5_3:-7461766 Msa0795520:CDS
GACAAAATGCATAAAGCGCG+TGG 0.609172 5_3:+7462285 None:intergenic
CGGGTGAAAGTTTATTCAGG+AGG 0.610764 5_3:-7461006 Msa0795520:exon
GTTTGCAGCTTTGTGTACGG+TGG 0.633716 5_3:-7461233 Msa0795520:CDS
ACTGGTATTGATTTGATGAA+CGG 0.640757 5_3:-7461026 Msa0795520:CDS
ATTAAGAATATACCTGGACA+GGG 0.640852 5_3:+7461719 None:intergenic
GGACCTCACAATAGAACTGG+TGG 0.645571 5_3:-7461814 Msa0795520:CDS
ACGGATGGTCATGTTATCGG+TGG 0.655178 5_3:-7461769 Msa0795520:CDS
ATCAAATCAATACCAGTGTG+TGG 0.655711 5_3:+7461032 None:intergenic
TGCTTCCTTCCACTTCCCGG+TGG 0.663805 5_3:+7463811 None:intergenic
AAAAGTACACAACCACACAC+TGG 0.665666 5_3:-7461044 Msa0795520:CDS
ATGCCACCAGTTCTATTGTG+AGG 0.672283 5_3:+7461811 None:intergenic
GCTAATTTGTCACTACTCTG+AGG 0.677251 5_3:+7461152 None:intergenic
GCTTCAATGGTGATAACATG+AGG 0.739912 5_3:+7463048 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAAATTATAACTATTTAA+GGG + chr5_3:7462522-7462541 None:intergenic 10.0%
!! AACAAAATTATAACTATTTA+AGG + chr5_3:7462523-7462542 None:intergenic 10.0%
!!! TTATTTTTTATTTATTTTGC+AGG - chr5_3:7462654-7462673 Msa0795520:intron 10.0%
!!! TATTTTTTATTTATTTTGCA+GGG - chr5_3:7462655-7462674 Msa0795520:intron 10.0%
!! AAAAATATAATATGGAAAGT+CGG + chr5_3:7461740-7461759 None:intergenic 15.0%
!!! ATTTTTTATTTATTTTGCAG+GGG - chr5_3:7462656-7462675 Msa0795520:intron 15.0%
!! TTGATTGTATGTATTGTTTA+AGG - chr5_3:7460883-7460902 Msa0795520:three_prime_UTR 20.0%
!! AATTACTGAATAATAACACT+TGG + chr5_3:7461288-7461307 None:intergenic 20.0%
!!! AGTGTTATTATTCAGTAATT+TGG - chr5_3:7461288-7461307 Msa0795520:intron 20.0%
!! ACAACTAAATATAAACAAAG+TGG + chr5_3:7461647-7461666 None:intergenic 20.0%
!! AGTTATGACTATTAAAGAAA+AGG - chr5_3:7462572-7462591 Msa0795520:intron 20.0%
!! GTTATGACTATTAAAGAAAA+GGG - chr5_3:7462573-7462592 Msa0795520:intron 20.0%
!!! ATTTTATTTTTCATGTTTGC+AGG - chr5_3:7462730-7462749 Msa0795520:intron 20.0%
!!! TTTTATTTTTCATGTTTGCA+GGG - chr5_3:7462731-7462750 Msa0795520:intron 20.0%
!!! TTAAGTTGTTTATCTAAACA+GGG + chr5_3:7463047-7463066 None:intergenic 20.0%
!!! ATTAAGTTGTTTATCTAAAC+AGG + chr5_3:7463048-7463067 None:intergenic 20.0%
!! ACTGTATTTATATAAGCTAT+AGG - chr5_3:7463143-7463162 Msa0795520:intron 20.0%
!!! GTATGGTTTGTGTTTTTATA+TGG - chr5_3:7460849-7460868 Msa0795520:three_prime_UTR 25.0%
! GTATGTATTGTTTAAGGATT+TGG - chr5_3:7460889-7460908 Msa0795520:three_prime_UTR 25.0%
!! AAGGATTTGGAATTGTAATT+TGG - chr5_3:7460902-7460921 Msa0795520:three_prime_UTR 25.0%
!!! TTATCAACTTGCTAATAGAT+TGG - chr5_3:7461062-7461081 Msa0795520:CDS 25.0%
!! AAGTATAAAGCATCTAGAAA+TGG + chr5_3:7461171-7461190 None:intergenic 25.0%
! GATAAAAGCAAAAGAAAAGA+AGG + chr5_3:7461214-7461233 None:intergenic 25.0%
!! ATTGTTGTGTTTTATATTGG+CGG - chr5_3:7461261-7461280 Msa0795520:intron 25.0%
! GTCAAAAATGACTAAATTGA+TGG - chr5_3:7461349-7461368 Msa0795520:intron 25.0%
!! ATGACTAAATTGATGGTAAT+TGG - chr5_3:7461356-7461375 Msa0795520:intron 25.0%
!! TGTATTGAAACAGAAGATTT+TGG - chr5_3:7461707-7461726 Msa0795520:intron 25.0%
! TTTAAATCATAATACCCCAT+AGG - chr5_3:7461757-7461776 Msa0795520:CDS 25.0%
! AACAAAAAAGCCTAAGAATA+TGG - chr5_3:7461889-7461908 Msa0795520:intron 25.0%
!!! ATGGCAATAGAGATATTTTT+TGG - chr5_3:7461908-7461927 Msa0795520:intron 25.0%
!!! TGGCAATAGAGATATTTTTT+GGG - chr5_3:7461909-7461928 Msa0795520:intron 25.0%
! CAAAAGAAAATATCCATTCA+AGG + chr5_3:7462270-7462289 None:intergenic 25.0%
!!! TGGATATTTTCTTTTGTTTC+AGG - chr5_3:7462274-7462293 Msa0795520:CDS 25.0%
! AAACATAAAATGTCTTGTAG+TGG + chr5_3:7462463-7462482 None:intergenic 25.0%
! TTCCAAATATTATGCTTATC+TGG - chr5_3:7462758-7462777 Msa0795520:intron 25.0%
! AACCAGATAAGCATAATATT+TGG + chr5_3:7462763-7462782 None:intergenic 25.0%
! ATTGCAATTAAGAATATACC+TGG + chr5_3:7462910-7462929 None:intergenic 25.0%
! ATTCTTAATTGCAATCTCAA+TGG - chr5_3:7462915-7462934 Msa0795520:intron 25.0%
!! TGTAACAAACGAATCATTTT+AGG - chr5_3:7463754-7463773 Msa0795520:intron 25.0%
!! GTAACAAACGAATCATTTTA+GGG - chr5_3:7463755-7463774 Msa0795520:intron 25.0%
!! GGTTTGTGTTTTTATATGGA+TGG - chr5_3:7460853-7460872 Msa0795520:three_prime_UTR 30.0%
!!! ATTTGGCTTGTTCATTTTAG+AGG - chr5_3:7460919-7460938 Msa0795520:three_prime_UTR 30.0%
!!! TTTGGCTTGTTCATTTTAGA+GGG - chr5_3:7460920-7460939 Msa0795520:three_prime_UTR 30.0%
TATAAAACACAACAATGGCA+AGG + chr5_3:7461257-7461276 None:intergenic 30.0%
! GCCATTGTTGTGTTTTATAT+TGG - chr5_3:7461258-7461277 Msa0795520:intron 30.0%
GCCAATATAAAACACAACAA+TGG + chr5_3:7461262-7461281 None:intergenic 30.0%
!! AACTAGTCTTATACATGTCT+GGG + chr5_3:7461395-7461414 None:intergenic 30.0%
!! AAACTAGTCTTATACATGTC+TGG + chr5_3:7461396-7461415 None:intergenic 30.0%
TTATCTATGTATAACTGCCT+CGG + chr5_3:7461421-7461440 None:intergenic 30.0%
ACATAGATAACCATCTATCA+TGG - chr5_3:7461431-7461450 Msa0795520:intron 30.0%
!! GTTTTTGTTTATCCCTTCTA+AGG - chr5_3:7461512-7461531 Msa0795520:intron 30.0%
ATTGTATTCTTCCATTTCGT+CGG - chr5_3:7461605-7461624 Msa0795520:intron 30.0%
ATCTGAATACAATGATGTTG+AGG - chr5_3:7461679-7461698 Msa0795520:intron 30.0%
AAGTCATAATGTAGCAACTT+TGG + chr5_3:7461844-7461863 None:intergenic 30.0%
ATCTCTATTGCCATATTCTT+AGG + chr5_3:7461902-7461921 None:intergenic 30.0%
!!! GGCAATAGAGATATTTTTTG+GGG - chr5_3:7461910-7461929 Msa0795520:intron 30.0%
!!! GCAATAGAGATATTTTTTGG+GGG - chr5_3:7461911-7461930 Msa0795520:intron 30.0%
TTACTTGACCAATAATGATG+TGG - chr5_3:7462006-7462025 Msa0795520:intron 30.0%
AACTTTGAGTAAAAGCTTGA+AGG + chr5_3:7462247-7462266 None:intergenic 30.0%
TTTACTCAAAGTTCCTTGAA+TGG - chr5_3:7462254-7462273 Msa0795520:CDS 30.0%
ACAAGTATCATCTGTTCTAT+CGG - chr5_3:7462483-7462502 Msa0795520:intron 30.0%
TGACTATTAAAGAAAAGGGA+CGG - chr5_3:7462577-7462596 Msa0795520:intron 30.0%
ATTAAGAATATACCTGGACA+GGG + chr5_3:7462904-7462923 None:intergenic 30.0%
AATTAAGAATATACCTGGAC+AGG + chr5_3:7462905-7462924 None:intergenic 30.0%
!!! TCTCAATGGTTTTGTAACAA+TGG - chr5_3:7462929-7462948 Msa0795520:intron 30.0%
TTAAGTCAAAACACTTACAG+TGG - chr5_3:7463008-7463027 Msa0795520:intron 30.0%
!! TATTTGGATTGGTTTAGTTG+AGG + chr5_3:7463265-7463284 None:intergenic 30.0%
TCAACTAAACCAATCCAAAT+AGG - chr5_3:7463264-7463283 Msa0795520:intron 30.0%
CCTATATCATTATTGACCAT+GGG + chr5_3:7463290-7463309 None:intergenic 30.0%
!!! GTTTCTTGTTTTGTTGTCTT+TGG + chr5_3:7463420-7463439 None:intergenic 30.0%
!!! GAAGCTGTATAGTTTTGATT+AGG + chr5_3:7463513-7463532 None:intergenic 30.0%
AATCAAAACTATACAGCTTC+TGG - chr5_3:7463513-7463532 Msa0795520:intron 30.0%
!! ACTGGTATTGATTTGATGAA+CGG - chr5_3:7463594-7463613 Msa0795520:intron 30.0%
TGAAACTCTAGGTAAAATAG+AGG - chr5_3:7463809-7463828 Msa0795520:five_prime_UTR 30.0%
ATACTTTGGACCTCAAGAAT+TGG - chr5_3:7460996-7461015 Msa0795520:three_prime_UTR 35.0%
TTAGCAAGTGAACAACATCA+AGG + chr5_3:7461023-7461042 None:intergenic 35.0%
AAAGTCACTGTCTACCTAAA+GGG + chr5_3:7461089-7461108 None:intergenic 35.0%
AAAAGTCACTGTCTACCTAA+AGG + chr5_3:7461090-7461109 None:intergenic 35.0%
! AGGTAGACAGTGACTTTTTA+AGG - chr5_3:7461092-7461111 Msa0795520:CDS 35.0%
GGAACAAAAATAGTTGCAAC+TGG + chr5_3:7461236-7461255 None:intergenic 35.0%
!! TAATTTGGTGTCTCTTGACT+TGG - chr5_3:7461303-7461322 Msa0795520:intron 35.0%
!! GTATAAGACTAGTTTAACCG+AGG - chr5_3:7461401-7461420 Msa0795520:intron 35.0%
ACATCAGAAACCATGATAGA+TGG + chr5_3:7461444-7461463 None:intergenic 35.0%
!! TTTATCCCTTCTAAGGTGAA+TGG - chr5_3:7461519-7461538 Msa0795520:intron 35.0%
TTCATCCATTCACCTTAGAA+GGG + chr5_3:7461527-7461546 None:intergenic 35.0%
AATTACCTCTTGAGCTTCAA+TGG + chr5_3:7461588-7461607 None:intergenic 35.0%
TTGGTATCATTAGACCTATG+GGG + chr5_3:7461774-7461793 None:intergenic 35.0%
GTTGGTATCATTAGACCTAT+GGG + chr5_3:7461775-7461794 None:intergenic 35.0%
TGTTGGTATCATTAGACCTA+TGG + chr5_3:7461776-7461795 None:intergenic 35.0%
GTCAATGTCAACAATGATGT+TGG + chr5_3:7461793-7461812 None:intergenic 35.0%
TCATTGTTGACATTGACGTA+AGG - chr5_3:7461796-7461815 Msa0795520:CDS 35.0%
TTGACCAATAATGATGTGGA+GGG - chr5_3:7462010-7462029 Msa0795520:intron 35.0%
ATGTAAGTGGAAATTGCTGT+AGG - chr5_3:7462036-7462055 Msa0795520:intron 35.0%
CATAAAATGTCTTGTAGTGG+AGG + chr5_3:7462460-7462479 None:intergenic 35.0%
TAAAGAAAAGGGACGGTTAA+TGG - chr5_3:7462584-7462603 Msa0795520:intron 35.0%
!! ATGCTTATCTGGTTCTTACT+TGG - chr5_3:7462769-7462788 Msa0795520:intron 35.0%
! TAGTGTTTCCCTTTCTAGTA+CGG - chr5_3:7462832-7462851 Msa0795520:intron 35.0%
AAAACACTTACAGTGGAGAT+TGG - chr5_3:7463015-7463034 Msa0795520:intron 35.0%
CCCATGGTCAATAATGATAT+AGG - chr5_3:7463287-7463306 Msa0795520:intron 35.0%
GCCTATATCATTATTGACCA+TGG + chr5_3:7463291-7463310 None:intergenic 35.0%
!!! TCTCGTTTGTTTTGAGGAAA+AGG + chr5_3:7463346-7463365 None:intergenic 35.0%
!!! GCTGTATAGTTTTGATTAGG+TGG + chr5_3:7463510-7463529 None:intergenic 35.0%
ATCAAATCAATACCAGTGTG+TGG + chr5_3:7463591-7463610 None:intergenic 35.0%
!! CTGGTATTGATTTGATGAAC+GGG - chr5_3:7463595-7463614 Msa0795520:intron 35.0%
! TGATTCGTTTGTTACAGCAT+AGG + chr5_3:7463750-7463769 None:intergenic 35.0%
GTGCAAAGAAATGAAACTCT+AGG - chr5_3:7463798-7463817 Msa0795520:five_prime_UTR 35.0%
ACATCAAGGACCAATTCTTG+AGG + chr5_3:7461009-7461028 None:intergenic 40.0%
! GCTAATAGATTGGTCCCTTT+AGG - chr5_3:7461072-7461091 Msa0795520:CDS 40.0%
GTTCATCCATTCACCTTAGA+AGG + chr5_3:7461528-7461547 None:intergenic 40.0%
GCTTCAATGGTGATAACATG+AGG + chr5_3:7461575-7461594 None:intergenic 40.0%
TATCACCATTGAAGCTCAAG+AGG - chr5_3:7461580-7461599 Msa0795520:intron 40.0%
AAAAATGTGCGCAAGCTTCA+TGG - chr5_3:7461935-7461954 Msa0795520:intron 40.0%
CTTGACCAATAATGATGTGG+AGG - chr5_3:7462009-7462028 Msa0795520:intron 40.0%
TGACCAATAATGATGTGGAG+GGG - chr5_3:7462011-7462030 Msa0795520:intron 40.0%
TAACCCCTCCACATCATTAT+TGG + chr5_3:7462017-7462036 None:intergenic 40.0%
! ACGCGCTTTATGCATTTTGT+CGG - chr5_3:7462337-7462356 Msa0795520:intron 40.0%
! TTATGCATTTTGTCGGGAAC+TGG - chr5_3:7462344-7462363 Msa0795520:intron 40.0%
! TATGCATTTTGTCGGGAACT+GGG - chr5_3:7462345-7462364 Msa0795520:intron 40.0%
CTCATATGTAACACTGACAC+TGG + chr5_3:7462408-7462427 None:intergenic 40.0%
CAGTGTCAGTGTTACATATG+AGG - chr5_3:7462406-7462425 Msa0795520:intron 40.0%
TGAGGTTAGAGAACTAACAC+TGG - chr5_3:7462424-7462443 Msa0795520:intron 40.0%
! AAAATGTCTTGTAGTGGAGG+TGG + chr5_3:7462457-7462476 None:intergenic 40.0%
GCTTCATATGATCAAGCCTT+AGG + chr5_3:7462700-7462719 None:intergenic 40.0%
TCTTACTTGGTTGCTGAAGA+TGG - chr5_3:7462782-7462801 Msa0795520:intron 40.0%
ATGACCATCCGTACTAGAAA+GGG + chr5_3:7462843-7462862 None:intergenic 40.0%
AGTACGGATGGTCATGTTAT+CGG - chr5_3:7462848-7462867 Msa0795520:intron 40.0%
TTATTGACCATGGGCCTATT+TGG + chr5_3:7463281-7463300 None:intergenic 40.0%
TATAGGCAATCGTGCATCTT+AGG - chr5_3:7463304-7463323 Msa0795520:intron 40.0%
!!! CCAAAGTCTCGTTTGTTTTG+AGG + chr5_3:7463352-7463371 None:intergenic 40.0%
CCTCAAAACAAACGAGACTT+TGG - chr5_3:7463349-7463368 Msa0795520:intron 40.0%
! GTAGTTTGCAGCTTTGTGTA+CGG - chr5_3:7463384-7463403 Msa0795520:intron 40.0%
! GCTAATTTGTCACTACTCTG+AGG + chr5_3:7463471-7463490 None:intergenic 40.0%
! AGTGACAAATTAGCTTCTCC+AGG - chr5_3:7463477-7463496 Msa0795520:intron 40.0%
!! AACTATACAGCTTCTGGAAC+AGG - chr5_3:7463519-7463538 Msa0795520:intron 40.0%
! AAAAGTACACAACCACACAC+TGG - chr5_3:7463576-7463595 Msa0795520:intron 40.0%
GAACGGGTGAAAGTTTATTC+AGG - chr5_3:7463611-7463630 Msa0795520:intron 40.0%
AGGACGAAAGCAACACAAGT+AGG - chr5_3:7461112-7461131 Msa0795520:CDS 45.0%
GAATGGATGAACAGTTCAGC+TGG - chr5_3:7461536-7461555 Msa0795520:intron 45.0%
TTCCATTTCGTCGGACGTAT+AGG - chr5_3:7461614-7461633 Msa0795520:intron 45.0%
AACCTATACGTCCGACGAAA+TGG + chr5_3:7461619-7461638 None:intergenic 45.0%
ATGTGGAGGGGTTATGTAAG+TGG - chr5_3:7462023-7462042 Msa0795520:intron 45.0%
GACAAAATGCATAAAGCGCG+TGG + chr5_3:7462338-7462357 None:intergenic 45.0%
! CGCGCTTTATGCATTTTGTC+GGG - chr5_3:7462338-7462357 Msa0795520:intron 45.0%
AGTTAGTACCGCTTAGCCTA+AGG - chr5_3:7462681-7462700 Msa0795520:intron 45.0%
TGATCAAGCCTTAGGCTAAG+CGG + chr5_3:7462692-7462711 None:intergenic 45.0%
TACTTGGTTGCTGAAGATGG+TGG - chr5_3:7462785-7462804 Msa0795520:intron 45.0%
ATGCCACCAGTTCTATTGTG+AGG + chr5_3:7462812-7462831 None:intergenic 45.0%
! GTTTCCCTTTCTAGTACGGA+TGG - chr5_3:7462836-7462855 Msa0795520:intron 45.0%
CATGACCATCCGTACTAGAA+AGG + chr5_3:7462844-7462863 None:intergenic 45.0%
ACTTACAGTGGAGATTGGCA+TGG - chr5_3:7463020-7463039 Msa0795520:intron 45.0%
ACTGTTTCCCTAAGCTATCC+TGG - chr5_3:7463169-7463188 Msa0795520:intron 45.0%
AAGCTCTCCAGGATAGCTTA+GGG + chr5_3:7463179-7463198 None:intergenic 45.0%
TATCCTGGAGAGCTTGTGAT+TGG - chr5_3:7463184-7463203 Msa0795520:intron 45.0%
TTTCCAATCACAAGCTCTCC+AGG + chr5_3:7463190-7463209 None:intergenic 45.0%
AACCAATCCAAATAGGCCCA+TGG - chr5_3:7463271-7463290 Msa0795520:intron 45.0%
!! CTTCTGGAACAGGCACAATT+TGG - chr5_3:7463529-7463548 Msa0795520:intron 45.0%
GCACAATTTGGCATGGATCA+AGG - chr5_3:7463541-7463560 Msa0795520:intron 45.0%
CGGGTGAAAGTTTATTCAGG+AGG - chr5_3:7463614-7463633 Msa0795520:intron 45.0%
!! AATTAAAAAAATATATACTT+TGG - chr5_3:7460982-7461001 Msa0795520:three_prime_UTR 5.0%
!! TATGATTTAAAAATATAATA+TGG + chr5_3:7461748-7461767 None:intergenic 5.0%
! TGTTGCTTCCTTCCACTTCC+CGG + chr5_3:7460815-7460834 None:intergenic 50.0%
AAGCAACAGCTAGCTGCTCT+AGG - chr5_3:7460827-7460846 Msa0795520:three_prime_UTR 50.0%
! ACAGCTAGCTGCTCTAGGTA+TGG - chr5_3:7460832-7460851 Msa0795520:three_prime_UTR 50.0%
GATGAACAGTTCAGCTGGAC+AGG - chr5_3:7461541-7461560 Msa0795520:intron 50.0%
! CATTTTGTCGGGAACTGGGA+CGG - chr5_3:7462349-7462368 Msa0795520:intron 50.0%
ACACTGACACTGGTAGAAGC+AGG + chr5_3:7462398-7462417 None:intergenic 50.0%
AGAGAACTAACACTGGCCAG+TGG - chr5_3:7462431-7462450 Msa0795520:intron 50.0%
GGTGGACCTCACAATAGAAC+TGG - chr5_3:7462803-7462822 Msa0795520:intron 50.0%
GGACCTCACAATAGAACTGG+TGG - chr5_3:7462806-7462825 Msa0795520:intron 50.0%
ACGGATGGTCATGTTATCGG+TGG - chr5_3:7462851-7462870 Msa0795520:intron 50.0%
GATGGTCATGTTATCGGTGG+TGG - chr5_3:7462854-7462873 Msa0795520:intron 50.0%
!! TTATCGGTGGTGGTGTTGCT+AGG - chr5_3:7462864-7462883 Msa0795520:intron 50.0%
CAAGCTCTCCAGGATAGCTT+AGG + chr5_3:7463180-7463199 None:intergenic 50.0%
GACCATGGGCCTATTTGGAT+TGG + chr5_3:7463276-7463295 None:intergenic 50.0%
AACGAGACTTTGGTTGCTGC+AGG - chr5_3:7463359-7463378 Msa0795520:intron 50.0%
! GTTTGCAGCTTTGTGTACGG+TGG - chr5_3:7463387-7463406 Msa0795520:intron 50.0%
TGATTAGGTGGCTCACTTCC+TGG + chr5_3:7463498-7463517 None:intergenic 50.0%
GGAACAGGCACAATTTGGCA+TGG - chr5_3:7463534-7463553 Msa0795520:intron 50.0%
TATTGCTGCAAGCCCTGTCC+AGG - chr5_3:7462889-7462908 Msa0795520:intron 55.0%
GAGACTTTGGTTGCTGCAGG+TGG - chr5_3:7463362-7463381 Msa0795520:intron 55.0%
TGCTTCCTTCCACTTCCCGG+TGG + chr5_3:7460812-7460831 None:intergenic 60.0%
! CTTGTAGTGGAGGTGGCCAC+TGG + chr5_3:7462450-7462469 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 7460807 7463835 7460807 ID=Msa0795520;Name=Msa0795520
chr5_3 mRNA 7460807 7463835 7460807 ID=Msa0795520-mRNA-1;Parent=Msa0795520;Name=Msa0795520-mRNA-1;_AED=0.02;_eAED=0.02;_QI=50|1|1|1|0.75|0.8|5|215|196
chr5_3 exon 7460807 7461261 7460807 ID=Msa0795520-mRNA-1:exon:3086;Parent=Msa0795520-mRNA-1
chr5_3 exon 7461732 7461890 7461732 ID=Msa0795520-mRNA-1:exon:3085;Parent=Msa0795520-mRNA-1
chr5_3 exon 7462215 7462346 7462215 ID=Msa0795520-mRNA-1:exon:3084;Parent=Msa0795520-mRNA-1
chr5_3 exon 7463041 7463108 7463041 ID=Msa0795520-mRNA-1:exon:3083;Parent=Msa0795520-mRNA-1
chr5_3 exon 7463794 7463835 7463794 ID=Msa0795520-mRNA-1:exon:3082;Parent=Msa0795520-mRNA-1
chr5_3 five_prime_UTR 7463794 7463835 7463794 ID=Msa0795520-mRNA-1:five_prime_utr;Parent=Msa0795520-mRNA-1
chr5_3 five_prime_UTR 7463101 7463108 7463101 ID=Msa0795520-mRNA-1:five_prime_utr;Parent=Msa0795520-mRNA-1
chr5_3 CDS 7463041 7463100 7463041 ID=Msa0795520-mRNA-1:cds;Parent=Msa0795520-mRNA-1
chr5_3 CDS 7462215 7462346 7462215 ID=Msa0795520-mRNA-1:cds;Parent=Msa0795520-mRNA-1
chr5_3 CDS 7461732 7461890 7461732 ID=Msa0795520-mRNA-1:cds;Parent=Msa0795520-mRNA-1
chr5_3 CDS 7461022 7461261 7461022 ID=Msa0795520-mRNA-1:cds;Parent=Msa0795520-mRNA-1
chr5_3 three_prime_UTR 7460807 7461021 7460807 ID=Msa0795520-mRNA-1:three_prime_utr;Parent=Msa0795520-mRNA-1
Gene Sequence

>Msa0795520

ATGAACAGTTCAGCTGGACAGGCTTTTTCACCTCATGTTATCACCATTGAAGCTCAAGAGGACATTGTAGCAAAGTTATTGTCATTTTCACAACATAGACCACGCGCTTTATGCATTTTGTCGGGAACTGGGACGGTATCTTCAGTCACTCTGCGTCAGCCTGCTTCTACCAGTGTCAGTGTTACATATGAGGGTCGATTCCAAATATTATGCTTATCTGGTTCTTACTTGGTTGCTGAAGATGGTGGACCTCACAATAGAACTGGTGGCATTAGTGTTTCCCTTTCTAGTACGGATGGTCATGTTATCGGTGGTGGTGTTGCTAGGCTTATTGCTGCAAGCCCTGTCCAGGTGGTAGTTTGCAGCTTTGTGTACGGTGGTTCTAAGCCAAAGACAACAAAACAAGAAACTGCTGTAAAAGACGATGATGATTCTGAGCCTCAGAGTAGTGACAAATTAGCTTCTCCAGGAAGTGAGCCACCTAATCAAAACTATACAGCTTCTGGAACAGGCACAATTTGGCATGGATCAAGGACAGTAGACGTGAAAAGTACACAACCACACACTGGTATTGATTTGATGAACGGGTGA

Protein sequence

>Msa0795520

MNSSAGQAFSPHVITIEAQEDIVAKLLSFSQHRPRALCILSGTGTVSSVTLRQPASTSVSVTYEGRFQILCLSGSYLVAEDGGPHNRTGGISVSLSSTDGHVIGGGVARLIAASPVQVVVCSFVYGGSKPKTTKQETAVKDDDDSEPQSSDKLASPGSEPPNQNYTASGTGTIWHGSRTVDVKSTQPHTGIDLMNG*