Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0795520 | XP_003611096.1 | 96.429 | 196 | 7 | 0 | 1 | 196 | 126 | 321 | 1.60e-132 | 384 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0795520 | sp|Q8GXB3|AHL5_ARATH | 55.450 | 211 | 78 | 5 | 1 | 196 | 169 | 378 | 3.15e-62 | 200 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0795520 | G7KC38 | 96.429 | 196 | 7 | 0 | 1 | 196 | 126 | 321 | 7.63e-133 | 384 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0339500 | Msa0795520 | 0.808546 | 2.936620e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0795520 | MtrunA17_Chr5g0397551 | 96.429 | 196 | 7 | 0 | 1 | 196 | 126 | 321 | 1.47e-136 | 384 |
Msa0795520 | MtrunA17_Chr8g0386741 | 71.429 | 196 | 54 | 2 | 1 | 196 | 158 | 351 | 1.81e-89 | 266 |
Msa0795520 | MtrunA17_Chr8g0349091 | 47.000 | 200 | 99 | 4 | 1 | 196 | 147 | 343 | 5.85e-46 | 154 |
Msa0795520 | MtrunA17_Chr7g0247431 | 44.500 | 200 | 105 | 4 | 1 | 196 | 149 | 346 | 5.66e-41 | 141 |
Msa0795520 | MtrunA17_Chr1g0179461 | 52.941 | 136 | 62 | 2 | 3 | 136 | 139 | 274 | 3.64e-39 | 137 |
Msa0795520 | MtrunA17_Chr7g0245841 | 56.000 | 125 | 54 | 1 | 1 | 124 | 119 | 243 | 2.09e-35 | 127 |
Msa0795520 | MtrunA17_Chr8g0351761 | 42.708 | 192 | 98 | 4 | 4 | 187 | 137 | 324 | 1.06e-34 | 125 |
Msa0795520 | MtrunA17_Chr4g0054661 | 51.667 | 120 | 56 | 2 | 6 | 124 | 139 | 257 | 4.47e-33 | 120 |
Msa0795520 | MtrunA17_Chr1g0188211 | 52.419 | 124 | 57 | 2 | 4 | 126 | 129 | 251 | 5.30e-30 | 112 |
Msa0795520 | MtrunA17_Chr5g0398621 | 43.662 | 142 | 75 | 2 | 3 | 139 | 91 | 232 | 3.75e-29 | 108 |
Msa0795520 | MtrunA17_Chr4g0027331 | 46.094 | 128 | 65 | 3 | 1 | 124 | 11 | 138 | 1.07e-28 | 104 |
Msa0795520 | MtrunA17_Chr4g0056761 | 53.623 | 138 | 59 | 3 | 4 | 136 | 139 | 276 | 1.35e-28 | 108 |
Msa0795520 | MtrunA17_Chr7g0274821 | 42.632 | 190 | 86 | 6 | 4 | 192 | 138 | 305 | 1.35e-28 | 109 |
Msa0795520 | MtrunA17_Chr4g0027371 | 46.774 | 124 | 62 | 3 | 4 | 123 | 14 | 137 | 4.26e-28 | 105 |
Msa0795520 | MtrunA17_Chr6g0476061 | 45.113 | 133 | 72 | 1 | 3 | 134 | 124 | 256 | 6.58e-28 | 107 |
Msa0795520 | MtrunA17_Chr1g0190011 | 41.667 | 156 | 76 | 5 | 7 | 160 | 107 | 249 | 1.24e-27 | 106 |
Msa0795520 | MtrunA17_Chr4g0027351 | 48.718 | 117 | 56 | 3 | 4 | 118 | 14 | 128 | 4.70e-27 | 100 |
Msa0795520 | MtrunA17_Chr5g0427311 | 39.683 | 126 | 71 | 4 | 1 | 123 | 72 | 195 | 4.98e-21 | 87.0 |
Msa0795520 | MtrunA17_Chr5g0417581 | 38.655 | 119 | 70 | 3 | 1 | 117 | 11 | 128 | 2.97e-20 | 84.0 |
Msa0795520 | MtrunA17_Chr3g0133051 | 38.462 | 117 | 70 | 2 | 9 | 123 | 101 | 217 | 1.10e-18 | 81.6 |
Msa0795520 | MtrunA17_Chr4g0027301 | 41.026 | 117 | 65 | 3 | 6 | 118 | 23 | 139 | 4.53e-18 | 77.0 |
Msa0795520 | MtrunA17_Chr5g0398531 | 37.324 | 142 | 79 | 3 | 5 | 145 | 123 | 255 | 1.16e-16 | 76.6 |
Msa0795520 | MtrunA17_Chr5g0443311 | 35.971 | 139 | 81 | 2 | 5 | 143 | 74 | 204 | 3.07e-16 | 74.7 |
Msa0795520 | MtrunA17_Chr8g0351651 | 41.525 | 118 | 65 | 2 | 7 | 123 | 111 | 225 | 4.14e-16 | 74.7 |
Msa0795520 | MtrunA17_Chr1g0168121 | 40.708 | 113 | 63 | 3 | 12 | 123 | 72 | 181 | 6.44e-15 | 71.2 |
Msa0795520 | MtrunA17_Chr3g0112131 | 39.831 | 118 | 67 | 3 | 7 | 123 | 104 | 218 | 6.74e-15 | 71.6 |
Msa0795520 | MtrunA17_Chr1g0190051 | 37.589 | 141 | 78 | 4 | 7 | 146 | 99 | 230 | 7.21e-15 | 71.2 |
Msa0795520 | MtrunA17_Chr6g0476241 | 37.500 | 144 | 80 | 5 | 3 | 145 | 171 | 305 | 8.12e-15 | 71.2 |
Msa0795520 | MtrunA17_Chr4g0054651 | 37.391 | 115 | 64 | 2 | 12 | 123 | 106 | 215 | 1.51e-14 | 70.5 |
Msa0795520 | MtrunA17_Chr7g0250031 | 45.455 | 66 | 36 | 0 | 12 | 77 | 87 | 152 | 2.02e-14 | 69.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0795520 | AT1G63470.1 | 55.450 | 211 | 78 | 5 | 1 | 196 | 169 | 378 | 3.20e-63 | 200 |
Msa0795520 | AT1G63480.5 | 54.144 | 181 | 70 | 3 | 1 | 169 | 146 | 325 | 2.83e-55 | 179 |
Msa0795520 | AT1G63480.7 | 54.144 | 181 | 70 | 3 | 1 | 169 | 146 | 325 | 2.83e-55 | 179 |
Msa0795520 | AT1G63480.4 | 54.144 | 181 | 70 | 3 | 1 | 169 | 146 | 325 | 2.83e-55 | 179 |
Msa0795520 | AT1G63480.3 | 54.144 | 181 | 70 | 3 | 1 | 169 | 146 | 325 | 2.83e-55 | 179 |
Msa0795520 | AT1G63480.6 | 54.144 | 181 | 70 | 3 | 1 | 169 | 146 | 325 | 2.83e-55 | 179 |
Msa0795520 | AT1G63480.2 | 54.144 | 181 | 70 | 3 | 1 | 169 | 152 | 331 | 2.89e-55 | 179 |
Msa0795520 | AT1G63480.1 | 54.144 | 181 | 70 | 3 | 1 | 169 | 152 | 331 | 2.89e-55 | 179 |
Msa0795520 | AT2G45850.1 | 46.569 | 204 | 92 | 6 | 1 | 196 | 154 | 348 | 7.88e-50 | 165 |
Msa0795520 | AT2G45850.2 | 46.569 | 204 | 92 | 6 | 1 | 196 | 154 | 348 | 7.88e-50 | 165 |
Msa0795520 | AT4G12080.1 | 55.072 | 138 | 57 | 2 | 4 | 136 | 165 | 302 | 3.16e-44 | 150 |
Msa0795520 | AT3G61310.1 | 43.781 | 201 | 106 | 3 | 1 | 196 | 156 | 354 | 1.41e-41 | 144 |
Msa0795520 | AT2G33620.1 | 56.154 | 130 | 55 | 2 | 4 | 131 | 158 | 287 | 1.09e-40 | 141 |
Msa0795520 | AT2G33620.4 | 56.154 | 130 | 55 | 2 | 4 | 131 | 158 | 287 | 1.09e-40 | 141 |
Msa0795520 | AT2G33620.2 | 56.154 | 130 | 55 | 2 | 4 | 131 | 158 | 287 | 1.09e-40 | 141 |
Msa0795520 | AT2G33620.3 | 56.154 | 130 | 55 | 2 | 4 | 131 | 158 | 287 | 1.09e-40 | 141 |
Msa0795520 | AT2G45850.3 | 55.645 | 124 | 54 | 1 | 1 | 123 | 154 | 277 | 2.19e-39 | 136 |
Msa0795520 | AT5G51590.1 | 53.333 | 120 | 55 | 1 | 8 | 126 | 177 | 296 | 6.35e-37 | 133 |
Msa0795520 | AT4G25320.1 | 50.000 | 122 | 60 | 1 | 6 | 126 | 163 | 284 | 2.00e-35 | 128 |
Msa0795520 | AT5G62260.1 | 50.000 | 120 | 59 | 1 | 6 | 124 | 157 | 276 | 1.42e-34 | 126 |
Msa0795520 | AT5G62260.3 | 50.000 | 120 | 59 | 1 | 6 | 124 | 157 | 276 | 1.42e-34 | 126 |
Msa0795520 | AT4G00200.2 | 54.074 | 135 | 57 | 2 | 9 | 138 | 123 | 257 | 1.24e-33 | 122 |
Msa0795520 | AT4G00200.1 | 54.074 | 135 | 57 | 2 | 9 | 138 | 123 | 257 | 1.24e-33 | 122 |
Msa0795520 | AT3G04590.1 | 47.059 | 119 | 59 | 2 | 6 | 123 | 168 | 283 | 4.89e-33 | 120 |
Msa0795520 | AT5G62260.2 | 47.500 | 120 | 62 | 1 | 6 | 124 | 157 | 276 | 8.77e-33 | 119 |
Msa0795520 | AT3G04590.2 | 47.059 | 119 | 59 | 2 | 6 | 123 | 168 | 283 | 1.28e-32 | 121 |
Msa0795520 | AT4G17950.1 | 43.137 | 153 | 80 | 3 | 1 | 150 | 213 | 361 | 2.31e-32 | 121 |
Msa0795520 | AT4G22770.2 | 46.452 | 155 | 71 | 3 | 3 | 156 | 144 | 287 | 8.53e-32 | 117 |
Msa0795520 | AT4G22770.1 | 46.452 | 155 | 71 | 3 | 3 | 156 | 144 | 287 | 8.53e-32 | 117 |
Msa0795520 | AT5G46640.1 | 48.855 | 131 | 66 | 1 | 4 | 133 | 175 | 305 | 4.29e-28 | 108 |
Msa0795520 | AT3G60870.1 | 41.880 | 117 | 62 | 3 | 8 | 123 | 85 | 196 | 3.40e-18 | 80.5 |
Msa0795520 | AT2G36560.1 | 37.190 | 121 | 73 | 3 | 6 | 123 | 102 | 222 | 1.06e-17 | 80.9 |
Msa0795520 | AT1G76500.1 | 39.344 | 122 | 61 | 3 | 12 | 123 | 102 | 220 | 3.25e-16 | 75.5 |
Msa0795520 | AT5G49700.1 | 33.600 | 125 | 68 | 4 | 9 | 123 | 83 | 202 | 1.26e-14 | 70.9 |
Msa0795520 | AT5G28590.1 | 34.839 | 155 | 70 | 5 | 3 | 156 | 24 | 148 | 7.56e-14 | 67.8 |
Msa0795520 | AT1G14490.1 | 35.294 | 119 | 72 | 3 | 10 | 123 | 31 | 149 | 1.07e-13 | 67.0 |
Msa0795520 | AT3G04570.1 | 35.200 | 125 | 71 | 2 | 7 | 123 | 105 | 227 | 1.34e-13 | 68.2 |
Msa0795520 | AT4G14465.1 | 43.662 | 71 | 40 | 0 | 7 | 77 | 92 | 162 | 1.66e-13 | 67.8 |
Msa0795520 | AT1G14490.2 | 35.000 | 120 | 73 | 3 | 9 | 123 | 49 | 168 | 2.02e-13 | 66.6 |
Msa0795520 | AT2G35270.1 | 35.652 | 115 | 66 | 2 | 12 | 123 | 108 | 217 | 4.23e-13 | 66.6 |
Msa0795520 | AT2G45430.1 | 32.692 | 156 | 90 | 4 | 5 | 155 | 112 | 257 | 4.49e-13 | 66.6 |
Msa0795520 | AT4G12050.1 | 40.496 | 121 | 67 | 3 | 5 | 123 | 141 | 258 | 6.90e-13 | 66.2 |
Msa0795520 | AT4G22810.1 | 39.024 | 123 | 68 | 3 | 5 | 123 | 128 | 247 | 1.47e-12 | 65.5 |
Msa0795520 | AT3G55560.1 | 39.823 | 113 | 65 | 3 | 12 | 123 | 118 | 228 | 3.27e-12 | 64.3 |
Msa0795520 | AT4G17800.1 | 34.783 | 115 | 67 | 2 | 12 | 123 | 112 | 221 | 5.39e-12 | 63.5 |
Msa0795520 | AT2G42940.1 | 39.823 | 113 | 66 | 1 | 12 | 124 | 83 | 193 | 7.01e-12 | 62.8 |
Find 52 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACCAGATAAGCATAATATT+TGG | 0.258954 | 5_3:+7461860 | None:intergenic |
TTCCAAATATTATGCTTATC+TGG | 0.278941 | 5_3:-7461862 | Msa0795520:CDS |
AATCAAAACTATACAGCTTC+TGG | 0.279195 | 5_3:-7461107 | Msa0795520:CDS |
TGATTAGGTGGCTCACTTCC+TGG | 0.283204 | 5_3:+7461125 | None:intergenic |
CTTCTGGAACAGGCACAATT+TGG | 0.301053 | 5_3:-7461091 | Msa0795520:CDS |
TGTTGCTTCCTTCCACTTCC+CGG | 0.301637 | 5_3:+7463808 | None:intergenic |
ATGCTTATCTGGTTCTTACT+TGG | 0.339032 | 5_3:-7461851 | Msa0795520:CDS |
GAACGGGTGAAAGTTTATTC+AGG | 0.376058 | 5_3:-7461009 | Msa0795520:exon |
AATTACCTCTTGAGCTTCAA+TGG | 0.384245 | 5_3:+7463035 | None:intergenic |
TCTTACTTGGTTGCTGAAGA+TGG | 0.386193 | 5_3:-7461838 | Msa0795520:CDS |
AACTATACAGCTTCTGGAAC+AGG | 0.388590 | 5_3:-7461101 | Msa0795520:CDS |
TTTATCCCTTCTAAGGTGAA+TGG | 0.390199 | 5_3:-7463101 | Msa0795520:intron |
AGTACGGATGGTCATGTTAT+CGG | 0.434375 | 5_3:-7461772 | Msa0795520:CDS |
TAGTGTTTCCCTTTCTAGTA+CGG | 0.442988 | 5_3:-7461788 | Msa0795520:CDS |
GATGAACAGTTCAGCTGGAC+AGG | 0.447850 | 5_3:-7463079 | Msa0795520:CDS |
AATTAAGAATATACCTGGAC+AGG | 0.469513 | 5_3:+7461718 | None:intergenic |
CATGACCATCCGTACTAGAA+AGG | 0.475896 | 5_3:+7461779 | None:intergenic |
TATTGCTGCAAGCCCTGTCC+AGG | 0.478697 | 5_3:-7461731 | Msa0795520:intron |
CTGGTATTGATTTGATGAAC+GGG | 0.480347 | 5_3:-7461025 | Msa0795520:CDS |
ATGACCATCCGTACTAGAAA+GGG | 0.483763 | 5_3:+7461780 | None:intergenic |
TTATCGGTGGTGGTGTTGCT+AGG | 0.492524 | 5_3:-7461756 | Msa0795520:CDS |
CAGTGTCAGTGTTACATATG+AGG | 0.494038 | 5_3:-7462214 | Msa0795520:intron |
GGTGGACCTCACAATAGAAC+TGG | 0.506766 | 5_3:-7461817 | Msa0795520:CDS |
GAATGGATGAACAGTTCAGC+TGG | 0.511176 | 5_3:-7463084 | Msa0795520:exon |
GCACAATTTGGCATGGATCA+AGG | 0.525254 | 5_3:-7461079 | Msa0795520:CDS |
TGAAACTCTAGGTAAAATAG+AGG | 0.527313 | 5_3:-7460811 | Msa0795520:three_prime_UTR |
AGTGACAAATTAGCTTCTCC+AGG | 0.534618 | 5_3:-7461143 | Msa0795520:CDS |
GTTTCCCTTTCTAGTACGGA+TGG | 0.539742 | 5_3:-7461784 | Msa0795520:CDS |
GTGCAAAGAAATGAAACTCT+AGG | 0.541757 | 5_3:-7460822 | Msa0795520:three_prime_UTR |
TGATTCGTTTGTTACAGCAT+AGG | 0.543040 | 5_3:+7460873 | None:intergenic |
AAGCAACAGCTAGCTGCTCT+AGG | 0.543103 | 5_3:-7463793 | Msa0795520:intron |
GTAGTTTGCAGCTTTGTGTA+CGG | 0.556100 | 5_3:-7461236 | Msa0795520:CDS |
CTCATATGTAACACTGACAC+TGG | 0.565778 | 5_3:+7462215 | None:intergenic |
TACTTGGTTGCTGAAGATGG+TGG | 0.568880 | 5_3:-7461835 | Msa0795520:CDS |
GGAACAGGCACAATTTGGCA+TGG | 0.571731 | 5_3:-7461086 | Msa0795520:CDS |
ACTCTAGGTAAAATAGAGGC+CGG | 0.582374 | 5_3:-7460807 | Msa0795520:three_prime_UTR |
TATCACCATTGAAGCTCAAG+AGG | 0.586931 | 5_3:-7463040 | Msa0795520:intron |
ACACTGACACTGGTAGAAGC+AGG | 0.587023 | 5_3:+7462225 | None:intergenic |
GATGGTCATGTTATCGGTGG+TGG | 0.597066 | 5_3:-7461766 | Msa0795520:CDS |
GACAAAATGCATAAAGCGCG+TGG | 0.609172 | 5_3:+7462285 | None:intergenic |
CGGGTGAAAGTTTATTCAGG+AGG | 0.610764 | 5_3:-7461006 | Msa0795520:exon |
GTTTGCAGCTTTGTGTACGG+TGG | 0.633716 | 5_3:-7461233 | Msa0795520:CDS |
ACTGGTATTGATTTGATGAA+CGG | 0.640757 | 5_3:-7461026 | Msa0795520:CDS |
ATTAAGAATATACCTGGACA+GGG | 0.640852 | 5_3:+7461719 | None:intergenic |
GGACCTCACAATAGAACTGG+TGG | 0.645571 | 5_3:-7461814 | Msa0795520:CDS |
ACGGATGGTCATGTTATCGG+TGG | 0.655178 | 5_3:-7461769 | Msa0795520:CDS |
ATCAAATCAATACCAGTGTG+TGG | 0.655711 | 5_3:+7461032 | None:intergenic |
TGCTTCCTTCCACTTCCCGG+TGG | 0.663805 | 5_3:+7463811 | None:intergenic |
AAAAGTACACAACCACACAC+TGG | 0.665666 | 5_3:-7461044 | Msa0795520:CDS |
ATGCCACCAGTTCTATTGTG+AGG | 0.672283 | 5_3:+7461811 | None:intergenic |
GCTAATTTGTCACTACTCTG+AGG | 0.677251 | 5_3:+7461152 | None:intergenic |
GCTTCAATGGTGATAACATG+AGG | 0.739912 | 5_3:+7463048 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ACAAAATTATAACTATTTAA+GGG | + | chr5_3:7462522-7462541 | None:intergenic | 10.0% |
!! | AACAAAATTATAACTATTTA+AGG | + | chr5_3:7462523-7462542 | None:intergenic | 10.0% |
!!! | TTATTTTTTATTTATTTTGC+AGG | - | chr5_3:7462654-7462673 | Msa0795520:intron | 10.0% |
!!! | TATTTTTTATTTATTTTGCA+GGG | - | chr5_3:7462655-7462674 | Msa0795520:intron | 10.0% |
!! | AAAAATATAATATGGAAAGT+CGG | + | chr5_3:7461740-7461759 | None:intergenic | 15.0% |
!!! | ATTTTTTATTTATTTTGCAG+GGG | - | chr5_3:7462656-7462675 | Msa0795520:intron | 15.0% |
!! | TTGATTGTATGTATTGTTTA+AGG | - | chr5_3:7460883-7460902 | Msa0795520:three_prime_UTR | 20.0% |
!! | AATTACTGAATAATAACACT+TGG | + | chr5_3:7461288-7461307 | None:intergenic | 20.0% |
!!! | AGTGTTATTATTCAGTAATT+TGG | - | chr5_3:7461288-7461307 | Msa0795520:intron | 20.0% |
!! | ACAACTAAATATAAACAAAG+TGG | + | chr5_3:7461647-7461666 | None:intergenic | 20.0% |
!! | AGTTATGACTATTAAAGAAA+AGG | - | chr5_3:7462572-7462591 | Msa0795520:intron | 20.0% |
!! | GTTATGACTATTAAAGAAAA+GGG | - | chr5_3:7462573-7462592 | Msa0795520:intron | 20.0% |
!!! | ATTTTATTTTTCATGTTTGC+AGG | - | chr5_3:7462730-7462749 | Msa0795520:intron | 20.0% |
!!! | TTTTATTTTTCATGTTTGCA+GGG | - | chr5_3:7462731-7462750 | Msa0795520:intron | 20.0% |
!!! | TTAAGTTGTTTATCTAAACA+GGG | + | chr5_3:7463047-7463066 | None:intergenic | 20.0% |
!!! | ATTAAGTTGTTTATCTAAAC+AGG | + | chr5_3:7463048-7463067 | None:intergenic | 20.0% |
!! | ACTGTATTTATATAAGCTAT+AGG | - | chr5_3:7463143-7463162 | Msa0795520:intron | 20.0% |
!!! | GTATGGTTTGTGTTTTTATA+TGG | - | chr5_3:7460849-7460868 | Msa0795520:three_prime_UTR | 25.0% |
! | GTATGTATTGTTTAAGGATT+TGG | - | chr5_3:7460889-7460908 | Msa0795520:three_prime_UTR | 25.0% |
!! | AAGGATTTGGAATTGTAATT+TGG | - | chr5_3:7460902-7460921 | Msa0795520:three_prime_UTR | 25.0% |
!!! | TTATCAACTTGCTAATAGAT+TGG | - | chr5_3:7461062-7461081 | Msa0795520:CDS | 25.0% |
!! | AAGTATAAAGCATCTAGAAA+TGG | + | chr5_3:7461171-7461190 | None:intergenic | 25.0% |
! | GATAAAAGCAAAAGAAAAGA+AGG | + | chr5_3:7461214-7461233 | None:intergenic | 25.0% |
!! | ATTGTTGTGTTTTATATTGG+CGG | - | chr5_3:7461261-7461280 | Msa0795520:intron | 25.0% |
! | GTCAAAAATGACTAAATTGA+TGG | - | chr5_3:7461349-7461368 | Msa0795520:intron | 25.0% |
!! | ATGACTAAATTGATGGTAAT+TGG | - | chr5_3:7461356-7461375 | Msa0795520:intron | 25.0% |
!! | TGTATTGAAACAGAAGATTT+TGG | - | chr5_3:7461707-7461726 | Msa0795520:intron | 25.0% |
! | TTTAAATCATAATACCCCAT+AGG | - | chr5_3:7461757-7461776 | Msa0795520:CDS | 25.0% |
! | AACAAAAAAGCCTAAGAATA+TGG | - | chr5_3:7461889-7461908 | Msa0795520:intron | 25.0% |
!!! | ATGGCAATAGAGATATTTTT+TGG | - | chr5_3:7461908-7461927 | Msa0795520:intron | 25.0% |
!!! | TGGCAATAGAGATATTTTTT+GGG | - | chr5_3:7461909-7461928 | Msa0795520:intron | 25.0% |
! | CAAAAGAAAATATCCATTCA+AGG | + | chr5_3:7462270-7462289 | None:intergenic | 25.0% |
!!! | TGGATATTTTCTTTTGTTTC+AGG | - | chr5_3:7462274-7462293 | Msa0795520:CDS | 25.0% |
! | AAACATAAAATGTCTTGTAG+TGG | + | chr5_3:7462463-7462482 | None:intergenic | 25.0% |
! | TTCCAAATATTATGCTTATC+TGG | - | chr5_3:7462758-7462777 | Msa0795520:intron | 25.0% |
! | AACCAGATAAGCATAATATT+TGG | + | chr5_3:7462763-7462782 | None:intergenic | 25.0% |
! | ATTGCAATTAAGAATATACC+TGG | + | chr5_3:7462910-7462929 | None:intergenic | 25.0% |
! | ATTCTTAATTGCAATCTCAA+TGG | - | chr5_3:7462915-7462934 | Msa0795520:intron | 25.0% |
!! | TGTAACAAACGAATCATTTT+AGG | - | chr5_3:7463754-7463773 | Msa0795520:intron | 25.0% |
!! | GTAACAAACGAATCATTTTA+GGG | - | chr5_3:7463755-7463774 | Msa0795520:intron | 25.0% |
!! | GGTTTGTGTTTTTATATGGA+TGG | - | chr5_3:7460853-7460872 | Msa0795520:three_prime_UTR | 30.0% |
!!! | ATTTGGCTTGTTCATTTTAG+AGG | - | chr5_3:7460919-7460938 | Msa0795520:three_prime_UTR | 30.0% |
!!! | TTTGGCTTGTTCATTTTAGA+GGG | - | chr5_3:7460920-7460939 | Msa0795520:three_prime_UTR | 30.0% |
TATAAAACACAACAATGGCA+AGG | + | chr5_3:7461257-7461276 | None:intergenic | 30.0% | |
! | GCCATTGTTGTGTTTTATAT+TGG | - | chr5_3:7461258-7461277 | Msa0795520:intron | 30.0% |
GCCAATATAAAACACAACAA+TGG | + | chr5_3:7461262-7461281 | None:intergenic | 30.0% | |
!! | AACTAGTCTTATACATGTCT+GGG | + | chr5_3:7461395-7461414 | None:intergenic | 30.0% |
!! | AAACTAGTCTTATACATGTC+TGG | + | chr5_3:7461396-7461415 | None:intergenic | 30.0% |
TTATCTATGTATAACTGCCT+CGG | + | chr5_3:7461421-7461440 | None:intergenic | 30.0% | |
ACATAGATAACCATCTATCA+TGG | - | chr5_3:7461431-7461450 | Msa0795520:intron | 30.0% | |
!! | GTTTTTGTTTATCCCTTCTA+AGG | - | chr5_3:7461512-7461531 | Msa0795520:intron | 30.0% |
ATTGTATTCTTCCATTTCGT+CGG | - | chr5_3:7461605-7461624 | Msa0795520:intron | 30.0% | |
ATCTGAATACAATGATGTTG+AGG | - | chr5_3:7461679-7461698 | Msa0795520:intron | 30.0% | |
AAGTCATAATGTAGCAACTT+TGG | + | chr5_3:7461844-7461863 | None:intergenic | 30.0% | |
ATCTCTATTGCCATATTCTT+AGG | + | chr5_3:7461902-7461921 | None:intergenic | 30.0% | |
!!! | GGCAATAGAGATATTTTTTG+GGG | - | chr5_3:7461910-7461929 | Msa0795520:intron | 30.0% |
!!! | GCAATAGAGATATTTTTTGG+GGG | - | chr5_3:7461911-7461930 | Msa0795520:intron | 30.0% |
TTACTTGACCAATAATGATG+TGG | - | chr5_3:7462006-7462025 | Msa0795520:intron | 30.0% | |
AACTTTGAGTAAAAGCTTGA+AGG | + | chr5_3:7462247-7462266 | None:intergenic | 30.0% | |
TTTACTCAAAGTTCCTTGAA+TGG | - | chr5_3:7462254-7462273 | Msa0795520:CDS | 30.0% | |
ACAAGTATCATCTGTTCTAT+CGG | - | chr5_3:7462483-7462502 | Msa0795520:intron | 30.0% | |
TGACTATTAAAGAAAAGGGA+CGG | - | chr5_3:7462577-7462596 | Msa0795520:intron | 30.0% | |
ATTAAGAATATACCTGGACA+GGG | + | chr5_3:7462904-7462923 | None:intergenic | 30.0% | |
AATTAAGAATATACCTGGAC+AGG | + | chr5_3:7462905-7462924 | None:intergenic | 30.0% | |
!!! | TCTCAATGGTTTTGTAACAA+TGG | - | chr5_3:7462929-7462948 | Msa0795520:intron | 30.0% |
TTAAGTCAAAACACTTACAG+TGG | - | chr5_3:7463008-7463027 | Msa0795520:intron | 30.0% | |
!! | TATTTGGATTGGTTTAGTTG+AGG | + | chr5_3:7463265-7463284 | None:intergenic | 30.0% |
TCAACTAAACCAATCCAAAT+AGG | - | chr5_3:7463264-7463283 | Msa0795520:intron | 30.0% | |
CCTATATCATTATTGACCAT+GGG | + | chr5_3:7463290-7463309 | None:intergenic | 30.0% | |
!!! | GTTTCTTGTTTTGTTGTCTT+TGG | + | chr5_3:7463420-7463439 | None:intergenic | 30.0% |
!!! | GAAGCTGTATAGTTTTGATT+AGG | + | chr5_3:7463513-7463532 | None:intergenic | 30.0% |
AATCAAAACTATACAGCTTC+TGG | - | chr5_3:7463513-7463532 | Msa0795520:intron | 30.0% | |
!! | ACTGGTATTGATTTGATGAA+CGG | - | chr5_3:7463594-7463613 | Msa0795520:intron | 30.0% |
TGAAACTCTAGGTAAAATAG+AGG | - | chr5_3:7463809-7463828 | Msa0795520:five_prime_UTR | 30.0% | |
ATACTTTGGACCTCAAGAAT+TGG | - | chr5_3:7460996-7461015 | Msa0795520:three_prime_UTR | 35.0% | |
TTAGCAAGTGAACAACATCA+AGG | + | chr5_3:7461023-7461042 | None:intergenic | 35.0% | |
AAAGTCACTGTCTACCTAAA+GGG | + | chr5_3:7461089-7461108 | None:intergenic | 35.0% | |
AAAAGTCACTGTCTACCTAA+AGG | + | chr5_3:7461090-7461109 | None:intergenic | 35.0% | |
! | AGGTAGACAGTGACTTTTTA+AGG | - | chr5_3:7461092-7461111 | Msa0795520:CDS | 35.0% |
GGAACAAAAATAGTTGCAAC+TGG | + | chr5_3:7461236-7461255 | None:intergenic | 35.0% | |
!! | TAATTTGGTGTCTCTTGACT+TGG | - | chr5_3:7461303-7461322 | Msa0795520:intron | 35.0% |
!! | GTATAAGACTAGTTTAACCG+AGG | - | chr5_3:7461401-7461420 | Msa0795520:intron | 35.0% |
ACATCAGAAACCATGATAGA+TGG | + | chr5_3:7461444-7461463 | None:intergenic | 35.0% | |
!! | TTTATCCCTTCTAAGGTGAA+TGG | - | chr5_3:7461519-7461538 | Msa0795520:intron | 35.0% |
TTCATCCATTCACCTTAGAA+GGG | + | chr5_3:7461527-7461546 | None:intergenic | 35.0% | |
AATTACCTCTTGAGCTTCAA+TGG | + | chr5_3:7461588-7461607 | None:intergenic | 35.0% | |
TTGGTATCATTAGACCTATG+GGG | + | chr5_3:7461774-7461793 | None:intergenic | 35.0% | |
GTTGGTATCATTAGACCTAT+GGG | + | chr5_3:7461775-7461794 | None:intergenic | 35.0% | |
TGTTGGTATCATTAGACCTA+TGG | + | chr5_3:7461776-7461795 | None:intergenic | 35.0% | |
GTCAATGTCAACAATGATGT+TGG | + | chr5_3:7461793-7461812 | None:intergenic | 35.0% | |
TCATTGTTGACATTGACGTA+AGG | - | chr5_3:7461796-7461815 | Msa0795520:CDS | 35.0% | |
TTGACCAATAATGATGTGGA+GGG | - | chr5_3:7462010-7462029 | Msa0795520:intron | 35.0% | |
ATGTAAGTGGAAATTGCTGT+AGG | - | chr5_3:7462036-7462055 | Msa0795520:intron | 35.0% | |
CATAAAATGTCTTGTAGTGG+AGG | + | chr5_3:7462460-7462479 | None:intergenic | 35.0% | |
TAAAGAAAAGGGACGGTTAA+TGG | - | chr5_3:7462584-7462603 | Msa0795520:intron | 35.0% | |
!! | ATGCTTATCTGGTTCTTACT+TGG | - | chr5_3:7462769-7462788 | Msa0795520:intron | 35.0% |
! | TAGTGTTTCCCTTTCTAGTA+CGG | - | chr5_3:7462832-7462851 | Msa0795520:intron | 35.0% |
AAAACACTTACAGTGGAGAT+TGG | - | chr5_3:7463015-7463034 | Msa0795520:intron | 35.0% | |
CCCATGGTCAATAATGATAT+AGG | - | chr5_3:7463287-7463306 | Msa0795520:intron | 35.0% | |
GCCTATATCATTATTGACCA+TGG | + | chr5_3:7463291-7463310 | None:intergenic | 35.0% | |
!!! | TCTCGTTTGTTTTGAGGAAA+AGG | + | chr5_3:7463346-7463365 | None:intergenic | 35.0% |
!!! | GCTGTATAGTTTTGATTAGG+TGG | + | chr5_3:7463510-7463529 | None:intergenic | 35.0% |
ATCAAATCAATACCAGTGTG+TGG | + | chr5_3:7463591-7463610 | None:intergenic | 35.0% | |
!! | CTGGTATTGATTTGATGAAC+GGG | - | chr5_3:7463595-7463614 | Msa0795520:intron | 35.0% |
! | TGATTCGTTTGTTACAGCAT+AGG | + | chr5_3:7463750-7463769 | None:intergenic | 35.0% |
GTGCAAAGAAATGAAACTCT+AGG | - | chr5_3:7463798-7463817 | Msa0795520:five_prime_UTR | 35.0% | |
ACATCAAGGACCAATTCTTG+AGG | + | chr5_3:7461009-7461028 | None:intergenic | 40.0% | |
! | GCTAATAGATTGGTCCCTTT+AGG | - | chr5_3:7461072-7461091 | Msa0795520:CDS | 40.0% |
GTTCATCCATTCACCTTAGA+AGG | + | chr5_3:7461528-7461547 | None:intergenic | 40.0% | |
GCTTCAATGGTGATAACATG+AGG | + | chr5_3:7461575-7461594 | None:intergenic | 40.0% | |
TATCACCATTGAAGCTCAAG+AGG | - | chr5_3:7461580-7461599 | Msa0795520:intron | 40.0% | |
AAAAATGTGCGCAAGCTTCA+TGG | - | chr5_3:7461935-7461954 | Msa0795520:intron | 40.0% | |
CTTGACCAATAATGATGTGG+AGG | - | chr5_3:7462009-7462028 | Msa0795520:intron | 40.0% | |
TGACCAATAATGATGTGGAG+GGG | - | chr5_3:7462011-7462030 | Msa0795520:intron | 40.0% | |
TAACCCCTCCACATCATTAT+TGG | + | chr5_3:7462017-7462036 | None:intergenic | 40.0% | |
! | ACGCGCTTTATGCATTTTGT+CGG | - | chr5_3:7462337-7462356 | Msa0795520:intron | 40.0% |
! | TTATGCATTTTGTCGGGAAC+TGG | - | chr5_3:7462344-7462363 | Msa0795520:intron | 40.0% |
! | TATGCATTTTGTCGGGAACT+GGG | - | chr5_3:7462345-7462364 | Msa0795520:intron | 40.0% |
CTCATATGTAACACTGACAC+TGG | + | chr5_3:7462408-7462427 | None:intergenic | 40.0% | |
CAGTGTCAGTGTTACATATG+AGG | - | chr5_3:7462406-7462425 | Msa0795520:intron | 40.0% | |
TGAGGTTAGAGAACTAACAC+TGG | - | chr5_3:7462424-7462443 | Msa0795520:intron | 40.0% | |
! | AAAATGTCTTGTAGTGGAGG+TGG | + | chr5_3:7462457-7462476 | None:intergenic | 40.0% |
GCTTCATATGATCAAGCCTT+AGG | + | chr5_3:7462700-7462719 | None:intergenic | 40.0% | |
TCTTACTTGGTTGCTGAAGA+TGG | - | chr5_3:7462782-7462801 | Msa0795520:intron | 40.0% | |
ATGACCATCCGTACTAGAAA+GGG | + | chr5_3:7462843-7462862 | None:intergenic | 40.0% | |
AGTACGGATGGTCATGTTAT+CGG | - | chr5_3:7462848-7462867 | Msa0795520:intron | 40.0% | |
TTATTGACCATGGGCCTATT+TGG | + | chr5_3:7463281-7463300 | None:intergenic | 40.0% | |
TATAGGCAATCGTGCATCTT+AGG | - | chr5_3:7463304-7463323 | Msa0795520:intron | 40.0% | |
!!! | CCAAAGTCTCGTTTGTTTTG+AGG | + | chr5_3:7463352-7463371 | None:intergenic | 40.0% |
CCTCAAAACAAACGAGACTT+TGG | - | chr5_3:7463349-7463368 | Msa0795520:intron | 40.0% | |
! | GTAGTTTGCAGCTTTGTGTA+CGG | - | chr5_3:7463384-7463403 | Msa0795520:intron | 40.0% |
! | GCTAATTTGTCACTACTCTG+AGG | + | chr5_3:7463471-7463490 | None:intergenic | 40.0% |
! | AGTGACAAATTAGCTTCTCC+AGG | - | chr5_3:7463477-7463496 | Msa0795520:intron | 40.0% |
!! | AACTATACAGCTTCTGGAAC+AGG | - | chr5_3:7463519-7463538 | Msa0795520:intron | 40.0% |
! | AAAAGTACACAACCACACAC+TGG | - | chr5_3:7463576-7463595 | Msa0795520:intron | 40.0% |
GAACGGGTGAAAGTTTATTC+AGG | - | chr5_3:7463611-7463630 | Msa0795520:intron | 40.0% | |
AGGACGAAAGCAACACAAGT+AGG | - | chr5_3:7461112-7461131 | Msa0795520:CDS | 45.0% | |
GAATGGATGAACAGTTCAGC+TGG | - | chr5_3:7461536-7461555 | Msa0795520:intron | 45.0% | |
TTCCATTTCGTCGGACGTAT+AGG | - | chr5_3:7461614-7461633 | Msa0795520:intron | 45.0% | |
AACCTATACGTCCGACGAAA+TGG | + | chr5_3:7461619-7461638 | None:intergenic | 45.0% | |
ATGTGGAGGGGTTATGTAAG+TGG | - | chr5_3:7462023-7462042 | Msa0795520:intron | 45.0% | |
GACAAAATGCATAAAGCGCG+TGG | + | chr5_3:7462338-7462357 | None:intergenic | 45.0% | |
! | CGCGCTTTATGCATTTTGTC+GGG | - | chr5_3:7462338-7462357 | Msa0795520:intron | 45.0% |
AGTTAGTACCGCTTAGCCTA+AGG | - | chr5_3:7462681-7462700 | Msa0795520:intron | 45.0% | |
TGATCAAGCCTTAGGCTAAG+CGG | + | chr5_3:7462692-7462711 | None:intergenic | 45.0% | |
TACTTGGTTGCTGAAGATGG+TGG | - | chr5_3:7462785-7462804 | Msa0795520:intron | 45.0% | |
ATGCCACCAGTTCTATTGTG+AGG | + | chr5_3:7462812-7462831 | None:intergenic | 45.0% | |
! | GTTTCCCTTTCTAGTACGGA+TGG | - | chr5_3:7462836-7462855 | Msa0795520:intron | 45.0% |
CATGACCATCCGTACTAGAA+AGG | + | chr5_3:7462844-7462863 | None:intergenic | 45.0% | |
ACTTACAGTGGAGATTGGCA+TGG | - | chr5_3:7463020-7463039 | Msa0795520:intron | 45.0% | |
ACTGTTTCCCTAAGCTATCC+TGG | - | chr5_3:7463169-7463188 | Msa0795520:intron | 45.0% | |
AAGCTCTCCAGGATAGCTTA+GGG | + | chr5_3:7463179-7463198 | None:intergenic | 45.0% | |
TATCCTGGAGAGCTTGTGAT+TGG | - | chr5_3:7463184-7463203 | Msa0795520:intron | 45.0% | |
TTTCCAATCACAAGCTCTCC+AGG | + | chr5_3:7463190-7463209 | None:intergenic | 45.0% | |
AACCAATCCAAATAGGCCCA+TGG | - | chr5_3:7463271-7463290 | Msa0795520:intron | 45.0% | |
!! | CTTCTGGAACAGGCACAATT+TGG | - | chr5_3:7463529-7463548 | Msa0795520:intron | 45.0% |
GCACAATTTGGCATGGATCA+AGG | - | chr5_3:7463541-7463560 | Msa0795520:intron | 45.0% | |
CGGGTGAAAGTTTATTCAGG+AGG | - | chr5_3:7463614-7463633 | Msa0795520:intron | 45.0% | |
!! | AATTAAAAAAATATATACTT+TGG | - | chr5_3:7460982-7461001 | Msa0795520:three_prime_UTR | 5.0% |
!! | TATGATTTAAAAATATAATA+TGG | + | chr5_3:7461748-7461767 | None:intergenic | 5.0% |
! | TGTTGCTTCCTTCCACTTCC+CGG | + | chr5_3:7460815-7460834 | None:intergenic | 50.0% |
AAGCAACAGCTAGCTGCTCT+AGG | - | chr5_3:7460827-7460846 | Msa0795520:three_prime_UTR | 50.0% | |
! | ACAGCTAGCTGCTCTAGGTA+TGG | - | chr5_3:7460832-7460851 | Msa0795520:three_prime_UTR | 50.0% |
GATGAACAGTTCAGCTGGAC+AGG | - | chr5_3:7461541-7461560 | Msa0795520:intron | 50.0% | |
! | CATTTTGTCGGGAACTGGGA+CGG | - | chr5_3:7462349-7462368 | Msa0795520:intron | 50.0% |
ACACTGACACTGGTAGAAGC+AGG | + | chr5_3:7462398-7462417 | None:intergenic | 50.0% | |
AGAGAACTAACACTGGCCAG+TGG | - | chr5_3:7462431-7462450 | Msa0795520:intron | 50.0% | |
GGTGGACCTCACAATAGAAC+TGG | - | chr5_3:7462803-7462822 | Msa0795520:intron | 50.0% | |
GGACCTCACAATAGAACTGG+TGG | - | chr5_3:7462806-7462825 | Msa0795520:intron | 50.0% | |
ACGGATGGTCATGTTATCGG+TGG | - | chr5_3:7462851-7462870 | Msa0795520:intron | 50.0% | |
GATGGTCATGTTATCGGTGG+TGG | - | chr5_3:7462854-7462873 | Msa0795520:intron | 50.0% | |
!! | TTATCGGTGGTGGTGTTGCT+AGG | - | chr5_3:7462864-7462883 | Msa0795520:intron | 50.0% |
CAAGCTCTCCAGGATAGCTT+AGG | + | chr5_3:7463180-7463199 | None:intergenic | 50.0% | |
GACCATGGGCCTATTTGGAT+TGG | + | chr5_3:7463276-7463295 | None:intergenic | 50.0% | |
AACGAGACTTTGGTTGCTGC+AGG | - | chr5_3:7463359-7463378 | Msa0795520:intron | 50.0% | |
! | GTTTGCAGCTTTGTGTACGG+TGG | - | chr5_3:7463387-7463406 | Msa0795520:intron | 50.0% |
TGATTAGGTGGCTCACTTCC+TGG | + | chr5_3:7463498-7463517 | None:intergenic | 50.0% | |
GGAACAGGCACAATTTGGCA+TGG | - | chr5_3:7463534-7463553 | Msa0795520:intron | 50.0% | |
TATTGCTGCAAGCCCTGTCC+AGG | - | chr5_3:7462889-7462908 | Msa0795520:intron | 55.0% | |
GAGACTTTGGTTGCTGCAGG+TGG | - | chr5_3:7463362-7463381 | Msa0795520:intron | 55.0% | |
TGCTTCCTTCCACTTCCCGG+TGG | + | chr5_3:7460812-7460831 | None:intergenic | 60.0% | |
! | CTTGTAGTGGAGGTGGCCAC+TGG | + | chr5_3:7462450-7462469 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_3 | gene | 7460807 | 7463835 | 7460807 | ID=Msa0795520;Name=Msa0795520 |
chr5_3 | mRNA | 7460807 | 7463835 | 7460807 | ID=Msa0795520-mRNA-1;Parent=Msa0795520;Name=Msa0795520-mRNA-1;_AED=0.02;_eAED=0.02;_QI=50|1|1|1|0.75|0.8|5|215|196 |
chr5_3 | exon | 7460807 | 7461261 | 7460807 | ID=Msa0795520-mRNA-1:exon:3086;Parent=Msa0795520-mRNA-1 |
chr5_3 | exon | 7461732 | 7461890 | 7461732 | ID=Msa0795520-mRNA-1:exon:3085;Parent=Msa0795520-mRNA-1 |
chr5_3 | exon | 7462215 | 7462346 | 7462215 | ID=Msa0795520-mRNA-1:exon:3084;Parent=Msa0795520-mRNA-1 |
chr5_3 | exon | 7463041 | 7463108 | 7463041 | ID=Msa0795520-mRNA-1:exon:3083;Parent=Msa0795520-mRNA-1 |
chr5_3 | exon | 7463794 | 7463835 | 7463794 | ID=Msa0795520-mRNA-1:exon:3082;Parent=Msa0795520-mRNA-1 |
chr5_3 | five_prime_UTR | 7463794 | 7463835 | 7463794 | ID=Msa0795520-mRNA-1:five_prime_utr;Parent=Msa0795520-mRNA-1 |
chr5_3 | five_prime_UTR | 7463101 | 7463108 | 7463101 | ID=Msa0795520-mRNA-1:five_prime_utr;Parent=Msa0795520-mRNA-1 |
chr5_3 | CDS | 7463041 | 7463100 | 7463041 | ID=Msa0795520-mRNA-1:cds;Parent=Msa0795520-mRNA-1 |
chr5_3 | CDS | 7462215 | 7462346 | 7462215 | ID=Msa0795520-mRNA-1:cds;Parent=Msa0795520-mRNA-1 |
chr5_3 | CDS | 7461732 | 7461890 | 7461732 | ID=Msa0795520-mRNA-1:cds;Parent=Msa0795520-mRNA-1 |
chr5_3 | CDS | 7461022 | 7461261 | 7461022 | ID=Msa0795520-mRNA-1:cds;Parent=Msa0795520-mRNA-1 |
chr5_3 | three_prime_UTR | 7460807 | 7461021 | 7460807 | ID=Msa0795520-mRNA-1:three_prime_utr;Parent=Msa0795520-mRNA-1 |
Gene Sequence |
Protein sequence |