AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0339500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0339500 MtrunA17_Chr2g0327951 97.297 148 4 0 1 148 38 185 4.14e-101 287
Msa0339500 MtrunA17_Chr4g0031041 91.667 132 10 1 18 148 14 145 4.42e-80 233
Msa0339500 MtrunA17_Chr4g0035621 86.842 152 16 2 1 148 1 152 9.04e-79 229
Msa0339500 MtrunA17_Chr4g0031001 86.667 150 16 2 1 148 1 148 5.39e-77 225
Msa0339500 MtrunA17_Chr4g0031651 86.000 150 17 2 1 148 1 148 8.18e-77 224
Msa0339500 MtrunA17_Chr2g0327931 87.023 131 13 1 22 148 23 153 1.01e-76 224
Msa0339500 MtrunA17_Chr4g0032301 91.339 127 9 1 22 148 24 148 1.19e-76 224
Msa0339500 MtrunA17_Chr7g0272611 81.061 132 25 0 9 140 13 144 1.80e-74 218
Msa0339500 MtrunA17_Chr8g0379311 89.394 132 12 1 1 130 1 132 6.19e-72 212
Msa0339500 MtrunA17_Chr7g0259151 73.810 126 31 1 2 127 4 127 8.33e-61 184
Msa0339500 MtrunA17_Chr7g0268831 74.400 125 29 1 3 127 6 127 2.87e-60 182
Msa0339500 MtrunA17_Chr7g0273351 73.810 126 29 2 3 127 2 124 9.59e-60 181
Msa0339500 MtrunA17_Chr2g0319191 78.378 111 24 0 17 127 11 121 4.05e-59 179
Msa0339500 MtrunA17_Chr7g0273331 73.810 126 29 2 3 127 58 180 6.62e-59 181
Msa0339500 MtrunA17_Chr2g0319181 79.630 108 22 0 20 127 14 121 1.59e-58 177
Msa0339500 MtrunA17_Chr6g0449661 65.354 127 30 3 22 147 85 198 3.20e-50 159
Msa0339500 MtrunA17_Chr3g0119971 64.286 126 31 3 23 147 81 193 2.11e-49 157
Msa0339500 MtrunA17_Chr7g0273341 63.566 129 36 2 12 140 48 165 1.59e-46 149
Msa0339500 MtrunA17_Chr4g0031031 74.286 105 22 1 43 147 10 109 1.48e-45 144
Msa0339500 MtrunA17_Chr1g0148961 60.177 113 43 2 19 130 23 134 5.41e-37 123
Msa0339500 MtrunA17_Chr1g0148951 60.177 113 43 2 19 130 23 134 5.41e-37 123
Msa0339500 MtrunA17_Chr1g0211651 57.983 119 48 2 9 126 10 127 7.50e-37 123
Msa0339500 MtrunA17_Chr1g0184901 62.500 104 37 2 24 126 28 130 2.04e-35 119
Msa0339500 MtrunA17_Chr1g0183701 58.904 73 30 0 65 137 30 102 4.98e-25 92.0
Msa0339500 MtrunA17_Chr4g0024701 49.524 105 33 2 22 126 26 110 1.03e-22 86.7
Msa0339500 MtrunA17_Chr4g0000531 71.111 45 13 0 83 127 5 49 8.81e-16 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0339500 AT5G02560.1 82.353 153 22 2 1 148 1 153 9.71e-80 233
Msa0339500 AT5G27670.1 77.551 147 32 1 2 148 5 150 5.47e-76 223
Msa0339500 AT5G02560.2 71.186 177 22 3 1 148 1 177 9.83e-75 221
Msa0339500 AT5G59870.1 72.667 150 39 1 1 148 1 150 5.70e-73 215
Msa0339500 AT1G51060.1 80.180 111 22 0 17 127 11 121 2.39e-60 182
Msa0339500 AT1G08880.1 72.800 125 30 1 7 127 3 127 9.48e-59 179
Msa0339500 AT4G27230.2 77.477 111 25 0 17 127 11 121 1.33e-58 178
Msa0339500 AT4G27230.1 77.477 111 25 0 17 127 11 121 1.33e-58 178
Msa0339500 AT5G54640.1 78.378 111 24 0 17 127 11 121 1.71e-58 178
Msa0339500 AT1G54690.1 73.770 122 28 1 10 127 6 127 2.38e-58 178
Msa0339500 AT3G20670.1 77.477 111 25 0 17 127 11 121 2.95e-58 177
Msa0339500 AT2G38810.1 59.292 113 44 2 15 126 21 132 7.93e-37 123
Msa0339500 AT2G38810.4 59.292 113 44 2 15 126 21 132 7.93e-37 123
Msa0339500 AT2G38810.3 59.292 113 44 2 15 126 21 132 7.93e-37 123
Msa0339500 AT2G38810.2 59.292 113 44 2 15 126 21 132 7.93e-37 123
Msa0339500 AT1G52740.1 62.857 105 37 2 23 126 27 130 1.40e-35 120
Msa0339500 AT3G54560.1 58.716 109 43 2 23 130 29 136 1.99e-34 117
Msa0339500 AT3G54560.2 58.716 109 43 2 23 130 29 136 1.99e-34 117
Msa0339500 AT4G13570.1 48.913 92 45 2 30 120 28 118 1.70e-20 81.3
Msa0339500 AT4G13570.2 48.352 91 45 2 31 120 35 124 4.77e-20 80.5

Find 59 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAAGCCTTCTTTGGAGATT+TGG 0.253652 2_4:-60640710 None:intergenic
GAAGCCTTCTCATTCTTCTT+AGG 0.258486 2_4:-60640658 None:intergenic
AACTAAATCTAAGCCTTCTT+TGG 0.259152 2_4:-60640718 None:intergenic
TTCTTCTTAGGTAAAAGAAT+TGG 0.279364 2_4:-60640646 None:intergenic
AAGGCTTAGATTTAGTTTCT+AGG 0.281906 2_4:+60640724 Msa0339500:exon
TAGATTTAGTTTCTAGGGTT+TGG 0.284472 2_4:+60640730 Msa0339500:exon
CTTGTCACCGCCTTCTTCCT+TGG 0.286829 2_4:-60640245 None:intergenic
GTGTTTGTAGCAATGCATTT+TGG 0.302728 2_4:+60640812 Msa0339500:three_prime_UTR
ACCAGCTCCTTTCTTCGTCT+TGG 0.348361 2_4:-60640207 None:intergenic
ATTATTTCCCTCGATATGAT+TGG 0.357937 2_4:-60641017 None:intergenic
GGTAGCCTTGGATGGAGATT+TGG 0.359896 2_4:-60640689 None:intergenic
AAAAGAATTGGGTTGATGTT+TGG 0.366899 2_4:-60640634 None:intergenic
CTTTGGAGATTTGGTAGCCT+TGG 0.379306 2_4:-60640701 None:intergenic
CAATTTCCAGTTGGAAGAAT+CGG 0.397925 2_4:+60640287 Msa0339500:CDS
GCTCATAACAATAATTAATC+AGG 0.407177 2_4:-60640947 None:intergenic
AGAACAGCTGCAAGATAAAC+AGG 0.409350 2_4:-60640359 None:intergenic
TCTTCTTAGGTAAAAGAATT+GGG 0.411045 2_4:-60640645 None:intergenic
ATGTAAGAATTTGTGAGAAA+TGG 0.420114 2_4:-60640140 None:intergenic
TTGTGTTCAGGTTCTTGAAT+TGG 0.420978 2_4:+60640483 Msa0339500:intron
TACCGACCGATTCTTCCAAC+TGG 0.449917 2_4:-60640293 None:intergenic
TACGCTCAGCGTGTTGGTAC+TGG 0.452334 2_4:+60640332 Msa0339500:CDS
CACGTGACAACAAGAAGAAC+AGG 0.464610 2_4:+60640518 Msa0339500:CDS
TGGAAATTGAAGACCAGCTC+TGG 0.468882 2_4:-60640273 None:intergenic
AGGCTTAGATTTAGTTTCTA+GGG 0.470083 2_4:+60640725 Msa0339500:exon
ATCTCACTGCTTTCTGATGT+AGG 0.470288 2_4:+60640835 Msa0339500:three_prime_UTR
AAAGGAGCTGGTGGAAGGAA+AGG 0.477487 2_4:+60640218 Msa0339500:CDS
GCAAGCACCAAGACGAAGAA+AGG 0.482883 2_4:+60640200 Msa0339500:CDS
GTTCAGGTTCTTGAATTGGC+TGG 0.491391 2_4:+60640487 Msa0339500:intron
CATCCCTAGGCATTTGCTGT+TGG 0.495579 2_4:+60640543 Msa0339500:CDS
GTGTGATGATGAGATGAAAG+TGG 0.501284 2_4:-60640114 None:intergenic
GAACTTGGAAAGTTGCTAGC+TGG 0.514674 2_4:+60640583 Msa0339500:CDS
GGCTACCAAATCTCCAAAGA+AGG 0.519492 2_4:+60640705 Msa0339500:CDS
GGAGATTTGGTAGCCTTGGA+TGG 0.524077 2_4:-60640697 None:intergenic
GTGAGGAATGATGAAGAACT+TGG 0.529342 2_4:+60640568 Msa0339500:CDS
ATCGGTCGGTACTTGAAGAA+AGG 0.536042 2_4:+60640305 Msa0339500:CDS
GAAAGGTGGTCCAAGGAAGA+AGG 0.553269 2_4:+60640235 Msa0339500:CDS
TTTACCTAAGAAGAATGAGA+AGG 0.555333 2_4:+60640654 Msa0339500:CDS
CGAAGAAAGGAGCTGGTGGA+AGG 0.557443 2_4:+60640213 Msa0339500:CDS
TCTTGAATATCTTGCTGCTG+AGG 0.561765 2_4:+60640379 Msa0339500:CDS
AAATTGAAGACCAGCTCTGG+TGG 0.562253 2_4:-60640270 None:intergenic
GTGACAAGATCCACCAGAGC+TGG 0.571539 2_4:+60640260 Msa0339500:CDS
ACTGCCAACAGCAAATGCCT+AGG 0.578012 2_4:-60640547 None:intergenic
ACCAAGACGAAGAAAGGAGC+TGG 0.579581 2_4:+60640206 Msa0339500:CDS
TGAGTCTCCAATCATATCGA+GGG 0.584973 2_4:+60641010 Msa0339500:three_prime_UTR
GGAAGATACGCTCAGCGTGT+TGG 0.585684 2_4:+60640326 Msa0339500:CDS
TGCTACCAAATCTCCATCCA+AGG 0.591170 2_4:+60640684 Msa0339500:CDS
GCTGGTCTTCAATTTCCAGT+TGG 0.598252 2_4:+60640278 Msa0339500:CDS
GTGGAAGGAAAGGTGGTCCA+AGG 0.602831 2_4:+60640228 Msa0339500:CDS
GGCATTTGCTGTTGGCAGTG+AGG 0.603106 2_4:+60640551 Msa0339500:CDS
CTGCCAACAGCAAATGCCTA+GGG 0.606589 2_4:-60640546 None:intergenic
TTGAGTCTCCAATCATATCG+AGG 0.616069 2_4:+60641009 Msa0339500:three_prime_UTR
AGAAGAACAGGATCATCCCT+AGG 0.619121 2_4:+60640530 Msa0339500:CDS
TTCCAGTTGGAAGAATCGGT+CGG 0.638316 2_4:+60640291 Msa0339500:CDS
GGAGCTGGTGGAAGGAAAGG+TGG 0.644393 2_4:+60640221 Msa0339500:CDS
AAGACGAAGAAAGGAGCTGG+TGG 0.662071 2_4:+60640209 Msa0339500:CDS
AGGGAAATAATGAGAAATTG+CGG 0.666410 2_4:+60641029 Msa0339500:three_prime_UTR
GCTGGAGTTACAATTGCACA+TGG 0.698871 2_4:+60640601 Msa0339500:CDS
AGGTGGTCCAAGGAAGAAGG+CGG 0.714301 2_4:+60640238 Msa0339500:CDS
GGAGTTACAATTGCACATGG+TGG 0.781867 2_4:+60640604 Msa0339500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCAATTTCATCAAAATTA+GGG - chr2_4:60640457-60640476 None:intergenic 15.0%
!! ATTTCAATTTCATCAAAATT+AGG - chr2_4:60640458-60640477 None:intergenic 15.0%
!! TTTCAATTTCATCAAAATTA+GGG - chr2_4:60640457-60640476 None:intergenic 15.0%
!! ATTTCAATTTCATCAAAATT+AGG - chr2_4:60640458-60640477 None:intergenic 15.0%
!! CAAATTTGAAAATCAAAAGA+GGG - chr2_4:60640425-60640444 None:intergenic 20.0%
!! TCAAATTTGAAAATCAAAAG+AGG - chr2_4:60640426-60640445 None:intergenic 20.0%
!! CAAATTTGAAAATCAAAAGA+GGG - chr2_4:60640425-60640444 None:intergenic 20.0%
!! TCAAATTTGAAAATCAAAAG+AGG - chr2_4:60640426-60640445 None:intergenic 20.0%
! ATGTAAGAATTTGTGAGAAA+TGG - chr2_4:60640143-60640162 None:intergenic 25.0%
!!! TTGAAATTTGATTTGTGTTC+AGG + chr2_4:60640471-60640490 Msa0339500:intron 25.0%
! TCTTCTTAGGTAAAAGAATT+GGG - chr2_4:60640648-60640667 None:intergenic 25.0%
! TTCTTCTTAGGTAAAAGAAT+TGG - chr2_4:60640649-60640668 None:intergenic 25.0%
!!! TTGGTGATTTAGATTTTGTT+TGG + chr2_4:60640749-60640768 Msa0339500:three_prime_UTR 25.0%
! GCTCATAACAATAATTAATC+AGG - chr2_4:60640950-60640969 None:intergenic 25.0%
! ATGTAAGAATTTGTGAGAAA+TGG - chr2_4:60640143-60640162 None:intergenic 25.0%
!!! TTGAAATTTGATTTGTGTTC+AGG + chr2_4:60640471-60640490 Msa0339500:intron 25.0%
! TCTTCTTAGGTAAAAGAATT+GGG - chr2_4:60640648-60640667 None:intergenic 25.0%
! TTCTTCTTAGGTAAAAGAAT+TGG - chr2_4:60640649-60640668 None:intergenic 25.0%
!!! TTGGTGATTTAGATTTTGTT+TGG + chr2_4:60640749-60640768 Msa0339500:three_prime_UTR 25.0%
! GCTCATAACAATAATTAATC+AGG - chr2_4:60640950-60640969 None:intergenic 25.0%
GTAGCAAAAAATCTCAGAAA+TGG + chr2_4:60640175-60640194 Msa0339500:exon 30.0%
!! AAAAGAATTGGGTTGATGTT+TGG - chr2_4:60640637-60640656 None:intergenic 30.0%
TTTACCTAAGAAGAATGAGA+AGG + chr2_4:60640654-60640673 Msa0339500:CDS 30.0%
AACTAAATCTAAGCCTTCTT+TGG - chr2_4:60640721-60640740 None:intergenic 30.0%
! AAGGCTTAGATTTAGTTTCT+AGG + chr2_4:60640724-60640743 Msa0339500:exon 30.0%
! AGGCTTAGATTTAGTTTCTA+GGG + chr2_4:60640725-60640744 Msa0339500:exon 30.0%
!! TAGATTTAGTTTCTAGGGTT+TGG + chr2_4:60640730-60640749 Msa0339500:exon 30.0%
ATTATTTCCCTCGATATGAT+TGG - chr2_4:60641020-60641039 None:intergenic 30.0%
GTAGCAAAAAATCTCAGAAA+TGG + chr2_4:60640175-60640194 Msa0339500:exon 30.0%
!! AAAAGAATTGGGTTGATGTT+TGG - chr2_4:60640637-60640656 None:intergenic 30.0%
TTTACCTAAGAAGAATGAGA+AGG + chr2_4:60640654-60640673 Msa0339500:CDS 30.0%
AACTAAATCTAAGCCTTCTT+TGG - chr2_4:60640721-60640740 None:intergenic 30.0%
! AAGGCTTAGATTTAGTTTCT+AGG + chr2_4:60640724-60640743 Msa0339500:exon 30.0%
! AGGCTTAGATTTAGTTTCTA+GGG + chr2_4:60640725-60640744 Msa0339500:exon 30.0%
!! TAGATTTAGTTTCTAGGGTT+TGG + chr2_4:60640730-60640749 Msa0339500:exon 30.0%
ATTATTTCCCTCGATATGAT+TGG - chr2_4:60641020-60641039 None:intergenic 30.0%
CAATTTCCAGTTGGAAGAAT+CGG + chr2_4:60640287-60640306 Msa0339500:CDS 35.0%
! TTGTGTTCAGGTTCTTGAAT+TGG + chr2_4:60640483-60640502 Msa0339500:intron 35.0%
! GTGTTTGTAGCAATGCATTT+TGG + chr2_4:60640812-60640831 Msa0339500:three_prime_UTR 35.0%
!! CTACTTTTCGCAATTACTAC+TGG + chr2_4:60640969-60640988 Msa0339500:three_prime_UTR 35.0%
CAATTTCCAGTTGGAAGAAT+CGG + chr2_4:60640287-60640306 Msa0339500:CDS 35.0%
! TTGTGTTCAGGTTCTTGAAT+TGG + chr2_4:60640483-60640502 Msa0339500:intron 35.0%
! GTGTTTGTAGCAATGCATTT+TGG + chr2_4:60640812-60640831 Msa0339500:three_prime_UTR 35.0%
!! CTACTTTTCGCAATTACTAC+TGG + chr2_4:60640969-60640988 Msa0339500:three_prime_UTR 35.0%
! GTGTGATGATGAGATGAAAG+TGG - chr2_4:60640117-60640136 None:intergenic 40.0%
AGAACAGCTGCAAGATAAAC+AGG - chr2_4:60640362-60640381 None:intergenic 40.0%
TCTTGAATATCTTGCTGCTG+AGG + chr2_4:60640379-60640398 Msa0339500:CDS 40.0%
GTGAGGAATGATGAAGAACT+TGG + chr2_4:60640568-60640587 Msa0339500:CDS 40.0%
GAAGCCTTCTCATTCTTCTT+AGG - chr2_4:60640661-60640680 None:intergenic 40.0%
! CTAAGCCTTCTTTGGAGATT+TGG - chr2_4:60640713-60640732 None:intergenic 40.0%
ATCTCACTGCTTTCTGATGT+AGG + chr2_4:60640835-60640854 Msa0339500:three_prime_UTR 40.0%
TTGAGTCTCCAATCATATCG+AGG + chr2_4:60641009-60641028 Msa0339500:three_prime_UTR 40.0%
TGAGTCTCCAATCATATCGA+GGG + chr2_4:60641010-60641029 Msa0339500:three_prime_UTR 40.0%
! GTGTGATGATGAGATGAAAG+TGG - chr2_4:60640117-60640136 None:intergenic 40.0%
AGAACAGCTGCAAGATAAAC+AGG - chr2_4:60640362-60640381 None:intergenic 40.0%
TCTTGAATATCTTGCTGCTG+AGG + chr2_4:60640379-60640398 Msa0339500:CDS 40.0%
GTGAGGAATGATGAAGAACT+TGG + chr2_4:60640568-60640587 Msa0339500:CDS 40.0%
GAAGCCTTCTCATTCTTCTT+AGG - chr2_4:60640661-60640680 None:intergenic 40.0%
! CTAAGCCTTCTTTGGAGATT+TGG - chr2_4:60640713-60640732 None:intergenic 40.0%
ATCTCACTGCTTTCTGATGT+AGG + chr2_4:60640835-60640854 Msa0339500:three_prime_UTR 40.0%
TTGAGTCTCCAATCATATCG+AGG + chr2_4:60641009-60641028 Msa0339500:three_prime_UTR 40.0%
TGAGTCTCCAATCATATCGA+GGG + chr2_4:60641010-60641029 Msa0339500:three_prime_UTR 40.0%
! AAATTGAAGACCAGCTCTGG+TGG - chr2_4:60640273-60640292 None:intergenic 45.0%
TGGAAATTGAAGACCAGCTC+TGG - chr2_4:60640276-60640295 None:intergenic 45.0%
!! GCTGGTCTTCAATTTCCAGT+TGG + chr2_4:60640278-60640297 Msa0339500:CDS 45.0%
TTCCAGTTGGAAGAATCGGT+CGG + chr2_4:60640291-60640310 Msa0339500:CDS 45.0%
ATCGGTCGGTACTTGAAGAA+AGG + chr2_4:60640305-60640324 Msa0339500:CDS 45.0%
! GTTCAGGTTCTTGAATTGGC+TGG + chr2_4:60640487-60640506 Msa0339500:intron 45.0%
CACGTGACAACAAGAAGAAC+AGG + chr2_4:60640518-60640537 Msa0339500:CDS 45.0%
AGAAGAACAGGATCATCCCT+AGG + chr2_4:60640530-60640549 Msa0339500:CDS 45.0%
GAACTTGGAAAGTTGCTAGC+TGG + chr2_4:60640583-60640602 Msa0339500:CDS 45.0%
GCTGGAGTTACAATTGCACA+TGG + chr2_4:60640601-60640620 Msa0339500:CDS 45.0%
GGAGTTACAATTGCACATGG+TGG + chr2_4:60640604-60640623 Msa0339500:CDS 45.0%
TGCTACCAAATCTCCATCCA+AGG + chr2_4:60640684-60640703 Msa0339500:CDS 45.0%
! CTTTGGAGATTTGGTAGCCT+TGG - chr2_4:60640704-60640723 None:intergenic 45.0%
GGCTACCAAATCTCCAAAGA+AGG + chr2_4:60640705-60640724 Msa0339500:CDS 45.0%
! AAATTGAAGACCAGCTCTGG+TGG - chr2_4:60640273-60640292 None:intergenic 45.0%
TGGAAATTGAAGACCAGCTC+TGG - chr2_4:60640276-60640295 None:intergenic 45.0%
!! GCTGGTCTTCAATTTCCAGT+TGG + chr2_4:60640278-60640297 Msa0339500:CDS 45.0%
TTCCAGTTGGAAGAATCGGT+CGG + chr2_4:60640291-60640310 Msa0339500:CDS 45.0%
ATCGGTCGGTACTTGAAGAA+AGG + chr2_4:60640305-60640324 Msa0339500:CDS 45.0%
! GTTCAGGTTCTTGAATTGGC+TGG + chr2_4:60640487-60640506 Msa0339500:intron 45.0%
CACGTGACAACAAGAAGAAC+AGG + chr2_4:60640518-60640537 Msa0339500:CDS 45.0%
AGAAGAACAGGATCATCCCT+AGG + chr2_4:60640530-60640549 Msa0339500:CDS 45.0%
GAACTTGGAAAGTTGCTAGC+TGG + chr2_4:60640583-60640602 Msa0339500:CDS 45.0%
GCTGGAGTTACAATTGCACA+TGG + chr2_4:60640601-60640620 Msa0339500:CDS 45.0%
GGAGTTACAATTGCACATGG+TGG + chr2_4:60640604-60640623 Msa0339500:CDS 45.0%
TGCTACCAAATCTCCATCCA+AGG + chr2_4:60640684-60640703 Msa0339500:CDS 45.0%
! CTTTGGAGATTTGGTAGCCT+TGG - chr2_4:60640704-60640723 None:intergenic 45.0%
GGCTACCAAATCTCCAAAGA+AGG + chr2_4:60640705-60640724 Msa0339500:CDS 45.0%
GCAAGCACCAAGACGAAGAA+AGG + chr2_4:60640200-60640219 Msa0339500:CDS 50.0%
ACCAAGACGAAGAAAGGAGC+TGG + chr2_4:60640206-60640225 Msa0339500:CDS 50.0%
ACCAGCTCCTTTCTTCGTCT+TGG - chr2_4:60640210-60640229 None:intergenic 50.0%
AAGACGAAGAAAGGAGCTGG+TGG + chr2_4:60640209-60640228 Msa0339500:CDS 50.0%
AAAGGAGCTGGTGGAAGGAA+AGG + chr2_4:60640218-60640237 Msa0339500:CDS 50.0%
GAAAGGTGGTCCAAGGAAGA+AGG + chr2_4:60640235-60640254 Msa0339500:CDS 50.0%
! TACCGACCGATTCTTCCAAC+TGG - chr2_4:60640296-60640315 None:intergenic 50.0%
!! CATCCCTAGGCATTTGCTGT+TGG + chr2_4:60640543-60640562 Msa0339500:CDS 50.0%
CTGCCAACAGCAAATGCCTA+GGG - chr2_4:60640549-60640568 None:intergenic 50.0%
ACTGCCAACAGCAAATGCCT+AGG - chr2_4:60640550-60640569 None:intergenic 50.0%
! GGTAGCCTTGGATGGAGATT+TGG - chr2_4:60640692-60640711 None:intergenic 50.0%
! GGAGATTTGGTAGCCTTGGA+TGG - chr2_4:60640700-60640719 None:intergenic 50.0%
GCAAGCACCAAGACGAAGAA+AGG + chr2_4:60640200-60640219 Msa0339500:CDS 50.0%
ACCAAGACGAAGAAAGGAGC+TGG + chr2_4:60640206-60640225 Msa0339500:CDS 50.0%
ACCAGCTCCTTTCTTCGTCT+TGG - chr2_4:60640210-60640229 None:intergenic 50.0%
AAGACGAAGAAAGGAGCTGG+TGG + chr2_4:60640209-60640228 Msa0339500:CDS 50.0%
AAAGGAGCTGGTGGAAGGAA+AGG + chr2_4:60640218-60640237 Msa0339500:CDS 50.0%
GAAAGGTGGTCCAAGGAAGA+AGG + chr2_4:60640235-60640254 Msa0339500:CDS 50.0%
! TACCGACCGATTCTTCCAAC+TGG - chr2_4:60640296-60640315 None:intergenic 50.0%
!! CATCCCTAGGCATTTGCTGT+TGG + chr2_4:60640543-60640562 Msa0339500:CDS 50.0%
CTGCCAACAGCAAATGCCTA+GGG - chr2_4:60640549-60640568 None:intergenic 50.0%
ACTGCCAACAGCAAATGCCT+AGG - chr2_4:60640550-60640569 None:intergenic 50.0%
! GGTAGCCTTGGATGGAGATT+TGG - chr2_4:60640692-60640711 None:intergenic 50.0%
! GGAGATTTGGTAGCCTTGGA+TGG - chr2_4:60640700-60640719 None:intergenic 50.0%
CGAAGAAAGGAGCTGGTGGA+AGG + chr2_4:60640213-60640232 Msa0339500:CDS 55.0%
GTGGAAGGAAAGGTGGTCCA+AGG + chr2_4:60640228-60640247 Msa0339500:CDS 55.0%
AGGTGGTCCAAGGAAGAAGG+CGG + chr2_4:60640238-60640257 Msa0339500:CDS 55.0%
CTTGTCACCGCCTTCTTCCT+TGG - chr2_4:60640248-60640267 None:intergenic 55.0%
GTGACAAGATCCACCAGAGC+TGG + chr2_4:60640260-60640279 Msa0339500:CDS 55.0%
GGAAGATACGCTCAGCGTGT+TGG + chr2_4:60640326-60640345 Msa0339500:CDS 55.0%
! TACGCTCAGCGTGTTGGTAC+TGG + chr2_4:60640332-60640351 Msa0339500:CDS 55.0%
!! GGCATTTGCTGTTGGCAGTG+AGG + chr2_4:60640551-60640570 Msa0339500:CDS 55.0%
CGAAGAAAGGAGCTGGTGGA+AGG + chr2_4:60640213-60640232 Msa0339500:CDS 55.0%
GTGGAAGGAAAGGTGGTCCA+AGG + chr2_4:60640228-60640247 Msa0339500:CDS 55.0%
AGGTGGTCCAAGGAAGAAGG+CGG + chr2_4:60640238-60640257 Msa0339500:CDS 55.0%
CTTGTCACCGCCTTCTTCCT+TGG - chr2_4:60640248-60640267 None:intergenic 55.0%
GTGACAAGATCCACCAGAGC+TGG + chr2_4:60640260-60640279 Msa0339500:CDS 55.0%
GGAAGATACGCTCAGCGTGT+TGG + chr2_4:60640326-60640345 Msa0339500:CDS 55.0%
! TACGCTCAGCGTGTTGGTAC+TGG + chr2_4:60640332-60640351 Msa0339500:CDS 55.0%
!! GGCATTTGCTGTTGGCAGTG+AGG + chr2_4:60640551-60640570 Msa0339500:CDS 55.0%
GGAGCTGGTGGAAGGAAAGG+TGG + chr2_4:60640221-60640240 Msa0339500:CDS 60.0%
GGAGCTGGTGGAAGGAAAGG+TGG + chr2_4:60640221-60640240 Msa0339500:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 60640104 60641048 60640104 ID=Msa0339500;Name=Msa0339500
chr2_4 mRNA 60640104 60641048 60640104 ID=Msa0339500-mRNA-1;Parent=Msa0339500;Name=Msa0339500-mRNA-1;_AED=0.03;_eAED=0.03;_QI=90|1|1|1|1|1|2|316|148
chr2_4 exon 60640104 60640400 60640104 ID=Msa0339500-mRNA-1:exon:18861;Parent=Msa0339500-mRNA-1
chr2_4 exon 60640493 60641048 60640493 ID=Msa0339500-mRNA-1:exon:18862;Parent=Msa0339500-mRNA-1
chr2_4 five_prime_UTR 60640104 60640193 60640104 ID=Msa0339500-mRNA-1:five_prime_utr;Parent=Msa0339500-mRNA-1
chr2_4 CDS 60640194 60640400 60640194 ID=Msa0339500-mRNA-1:cds;Parent=Msa0339500-mRNA-1
chr2_4 CDS 60640493 60640732 60640493 ID=Msa0339500-mRNA-1:cds;Parent=Msa0339500-mRNA-1
chr2_4 three_prime_UTR 60640733 60641048 60640733 ID=Msa0339500-mRNA-1:three_prime_utr;Parent=Msa0339500-mRNA-1
Gene Sequence

>Msa0339500

ATGGACGCAAGCACCAAGACGAAGAAAGGAGCTGGTGGAAGGAAAGGTGGTCCAAGGAAGAAGGCGGTGACAAGATCCACCAGAGCTGGTCTTCAATTTCCAGTTGGAAGAATCGGTCGGTACTTGAAGAAAGGAAGATACGCTCAGCGTGTTGGTACTGGTGCTCCTGTTTATCTTGCAGCTGTTCTTGAATATCTTGCTGCTGAGGTTCTTGAATTGGCTGGAAATGCTGCACGTGACAACAAGAAGAACAGGATCATCCCTAGGCATTTGCTGTTGGCAGTGAGGAATGATGAAGAACTTGGAAAGTTGCTAGCTGGAGTTACAATTGCACATGGTGGTGTTCTTCCAAACATCAACCCAATTCTTTTACCTAAGAAGAATGAGAAGGCTTCAACTGCTACCAAATCTCCATCCAAGGCTACCAAATCTCCAAAGAAGGCTTAG

Protein sequence

>Msa0339500

MDASTKTKKGAGGRKGGPRKKAVTRSTRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHLLLAVRNDEELGKLLAGVTIAHGGVLPNINPILLPKKNEKASTATKSPSKATKSPKKA*