Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0795610 | A0A2U1N9C7 | 64.162 | 173 | 54 | 2 | 32 | 204 | 30 | 194 | 4.78e-71 | 231 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0795610 | Msa0832850 | 0.953901 | 9.838240e-112 | -8.615850e-47 |
| Msa0402290 | Msa0795610 | 0.800057 | 1.722494e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0795610 | MtrunA17_Chr8g0391561 | 31.679 | 262 | 104 | 8 | 67 | 254 | 65 | 325 | 2.80e-27 | 109 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0795610 | AT4G00980.1 | 24.841 | 157 | 111 | 3 | 42 | 197 | 215 | 365 | 2.04e-12 | 67.0 |
Find 43 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTCTCTTCATTTGCTTTCT+TGG | 0.069054 | 5_3:-7596515 | None:intergenic |
| CTTGAGGTGCAGAAGGATTT+TGG | 0.199359 | 5_3:-7597170 | None:intergenic |
| ACTTCAGGCTAATGTGCTTT+TGG | 0.266661 | 5_3:+7596819 | Msa0795610:CDS |
| GTGGGAAGAGGTGTGGCAAC+AGG | 0.314445 | 5_3:-7596487 | None:intergenic |
| TCAAGCAAATCTAGCAGAAA+TGG | 0.366686 | 5_3:+7597188 | Msa0795610:CDS |
| TCATGAATCTGCTCCATGAT+TGG | 0.393327 | 5_3:-7596742 | None:intergenic |
| AGAAGTGTGTCGTGGGGAAC+TGG | 0.411463 | 5_3:+7596692 | Msa0795610:CDS |
| AAAGACAACAAAACTGTAAG+AGG | 0.415300 | 5_3:+7596553 | Msa0795610:CDS |
| ATCATTTCATGTACATCTAT+AGG | 0.433388 | 5_3:-7595483 | None:intergenic |
| TGGAGAAATTCCCACCCTCC+TGG | 0.439000 | 5_3:+7596839 | Msa0795610:CDS |
| GAAGATGTGCAAGATACTTC+AGG | 0.444881 | 5_3:+7596804 | Msa0795610:CDS |
| TACTTAATGATGCCATTTGT+GGG | 0.445169 | 5_3:-7595385 | None:intergenic |
| ATACTTAATGATGCCATTTG+TGG | 0.452730 | 5_3:-7595386 | None:intergenic |
| CAACGCGTAATCCACCTCTA+AGG | 0.461634 | 5_3:-7596419 | None:intergenic |
| TTCTTGGTCCCTGTGGGAAG+AGG | 0.473109 | 5_3:-7596499 | None:intergenic |
| AAGCGCCATAACTATTCAGC+AGG | 0.488579 | 5_3:-7596654 | None:intergenic |
| TCTGATCAAAACAGGTTCAA+AGG | 0.493272 | 5_3:+7596996 | Msa0795610:intron |
| GCTTGATGACAAACCAATCA+TGG | 0.493311 | 5_3:+7596729 | Msa0795610:CDS |
| GTTGCCACACCTCTTCCCAC+AGG | 0.494858 | 5_3:+7596490 | Msa0795610:CDS |
| AGTTATGGCGCTTATAATGC+TGG | 0.495336 | 5_3:+7596664 | Msa0795610:CDS |
| TTTGCTTTCTTGGTCCCTGT+GGG | 0.503167 | 5_3:-7596505 | None:intergenic |
| ATTTGTGATGTGCTGAATGA+AGG | 0.505130 | 5_3:+7596778 | Msa0795610:CDS |
| AACACCCTGCTGAATAGTTA+TGG | 0.516082 | 5_3:+7596649 | Msa0795610:CDS |
| ATTTGCTTTCTTGGTCCCTG+TGG | 0.516971 | 5_3:-7596506 | None:intergenic |
| AGATTTGCTTGAGGTGCAGA+AGG | 0.537548 | 5_3:-7597177 | None:intergenic |
| GTACAGCAGAAGAAACAAAC+AGG | 0.537733 | 5_3:+7597040 | Msa0795610:CDS |
| TGGGAAGAGGTGTGGCAACA+GGG | 0.544893 | 5_3:-7596486 | None:intergenic |
| TTGCCACACCTCTTCCCACA+GGG | 0.549622 | 5_3:+7596491 | Msa0795610:CDS |
| TTGGTTGCGATAGTCACTCC+AGG | 0.574791 | 5_3:-7596857 | None:intergenic |
| ATTTCTGCTAGATTTGCTTG+AGG | 0.585956 | 5_3:-7597186 | None:intergenic |
| GGGAAGAGGTGTGGCAACAG+GGG | 0.608846 | 5_3:-7596485 | None:intergenic |
| GGAAAGAAGAAGTGTGTCGT+GGG | 0.613140 | 5_3:+7596685 | Msa0795610:CDS |
| AGTCCACTTTGTTGTCGACA+AGG | 0.617418 | 5_3:-7597245 | None:intergenic |
| GATAGTCACTCCAGGAGGGT+GGG | 0.630300 | 5_3:-7596849 | None:intergenic |
| GGTCCCTGTGGGAAGAGGTG+TGG | 0.632265 | 5_3:-7596494 | None:intergenic |
| GATCGCTGCTGTAGTAGCAG+AGG | 0.646462 | 5_3:+7597218 | Msa0795610:CDS |
| CAGCAACAACAATAAAAGTG+AGG | 0.654208 | 5_3:-7595450 | None:intergenic |
| TTGCGATAGTCACTCCAGGA+GGG | 0.660542 | 5_3:-7596853 | None:intergenic |
| AAACCTTGTCGACAACAAAG+TGG | 0.672050 | 5_3:+7597242 | Msa0795610:CDS |
| AGCGCCATAACTATTCAGCA+GGG | 0.689172 | 5_3:-7596653 | None:intergenic |
| TGGAAAGAAGAAGTGTGTCG+TGG | 0.689972 | 5_3:+7596684 | Msa0795610:CDS |
| GTTGCGATAGTCACTCCAGG+AGG | 0.711188 | 5_3:-7596854 | None:intergenic |
| GAAAGAAGAAGTGTGTCGTG+GGG | 0.717135 | 5_3:+7596686 | Msa0795610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAAAATCAATTGATGAG+AGG | + | chr5_3:7595875-7595894 | Msa0795610:intron | 20.0% |
| !! | TTAAAAATCAATTGATGAGA+GGG | + | chr5_3:7595876-7595895 | Msa0795610:intron | 20.0% |
| !! | ATTAAAAATCAATTGATGAG+AGG | + | chr5_3:7595875-7595894 | Msa0795610:intron | 20.0% |
| !! | TTAAAAATCAATTGATGAGA+GGG | + | chr5_3:7595876-7595895 | Msa0795610:intron | 20.0% |
| ! | ATCATTTCATGTACATCTAT+AGG | - | chr5_3:7595486-7595505 | None:intergenic | 25.0% |
| ! | GTTAATTTACTAACTGATGT+GGG | - | chr5_3:7595736-7595755 | None:intergenic | 25.0% |
| ! | AAAATATTGAGCTGTAGAAA+TGG | - | chr5_3:7595846-7595865 | None:intergenic | 25.0% |
| !!! | TCTACAGCTCAATATTTTAA+CGG | + | chr5_3:7595848-7595867 | Msa0795610:intron | 25.0% |
| !!! | TATATTTTTTGAAGCCTTAG+AGG | + | chr5_3:7596405-7596424 | Msa0795610:intron | 25.0% |
| ! | ATGACAAAAAGATTCAGAAA+AGG | + | chr5_3:7597074-7597093 | Msa0795610:intron | 25.0% |
| ! | ATCATTTCATGTACATCTAT+AGG | - | chr5_3:7595486-7595505 | None:intergenic | 25.0% |
| ! | GTTAATTTACTAACTGATGT+GGG | - | chr5_3:7595736-7595755 | None:intergenic | 25.0% |
| ! | AAAATATTGAGCTGTAGAAA+TGG | - | chr5_3:7595846-7595865 | None:intergenic | 25.0% |
| !!! | TCTACAGCTCAATATTTTAA+CGG | + | chr5_3:7595848-7595867 | Msa0795610:intron | 25.0% |
| !!! | TATATTTTTTGAAGCCTTAG+AGG | + | chr5_3:7596405-7596424 | Msa0795610:intron | 25.0% |
| ! | ATGACAAAAAGATTCAGAAA+AGG | + | chr5_3:7597074-7597093 | Msa0795610:intron | 25.0% |
| ! | TACTTAATGATGCCATTTGT+GGG | - | chr5_3:7595388-7595407 | None:intergenic | 30.0% |
| ! | ATACTTAATGATGCCATTTG+TGG | - | chr5_3:7595389-7595408 | None:intergenic | 30.0% |
| AATGATGTTTAGCATTACAC+AGG | + | chr5_3:7595500-7595519 | Msa0795610:intron | 30.0% | |
| !! | TAATGCTATTTGACCGTTTT+TGG | + | chr5_3:7595569-7595588 | Msa0795610:intron | 30.0% |
| GGTTAATTTACTAACTGATG+TGG | - | chr5_3:7595737-7595756 | None:intergenic | 30.0% | |
| ! | AGAAAGGCATAAGAAAAAGA+TGG | - | chr5_3:7595758-7595777 | None:intergenic | 30.0% |
| TTATGCCTTTCTTCTCTATT+GGG | + | chr5_3:7595766-7595785 | Msa0795610:intron | 30.0% | |
| ATCAAGCAAAACTGAAGAAA+AGG | - | chr5_3:7595822-7595841 | None:intergenic | 30.0% | |
| ATAAAGCCACAGTTAAGAAT+TGG | + | chr5_3:7595916-7595935 | Msa0795610:intron | 30.0% | |
| TAAAGCCACAGTTAAGAATT+GGG | + | chr5_3:7595917-7595936 | Msa0795610:intron | 30.0% | |
| ! | CTCGATAAGTTCTATCTTTT+CGG | + | chr5_3:7596206-7596225 | Msa0795610:intron | 30.0% |
| ATGGAACTAACTATAGAAGA+TGG | + | chr5_3:7596368-7596387 | Msa0795610:intron | 30.0% | |
| AAAGACAACAAAACTGTAAG+AGG | + | chr5_3:7596553-7596572 | Msa0795610:CDS | 30.0% | |
| AGAAGTCCACAAAAATGATA+TGG | + | chr5_3:7596626-7596645 | Msa0795610:CDS | 30.0% | |
| ! | TTGAGTTTTCTGATCAAAAC+AGG | + | chr5_3:7596988-7597007 | Msa0795610:intron | 30.0% |
| !! | AAAATCACTTGCTATGTTTG+TGG | + | chr5_3:7597097-7597116 | Msa0795610:intron | 30.0% |
| ! | TACTTAATGATGCCATTTGT+GGG | - | chr5_3:7595388-7595407 | None:intergenic | 30.0% |
| ! | ATACTTAATGATGCCATTTG+TGG | - | chr5_3:7595389-7595408 | None:intergenic | 30.0% |
| AATGATGTTTAGCATTACAC+AGG | + | chr5_3:7595500-7595519 | Msa0795610:intron | 30.0% | |
| !! | TAATGCTATTTGACCGTTTT+TGG | + | chr5_3:7595569-7595588 | Msa0795610:intron | 30.0% |
| GGTTAATTTACTAACTGATG+TGG | - | chr5_3:7595737-7595756 | None:intergenic | 30.0% | |
| ! | AGAAAGGCATAAGAAAAAGA+TGG | - | chr5_3:7595758-7595777 | None:intergenic | 30.0% |
| TTATGCCTTTCTTCTCTATT+GGG | + | chr5_3:7595766-7595785 | Msa0795610:intron | 30.0% | |
| ATCAAGCAAAACTGAAGAAA+AGG | - | chr5_3:7595822-7595841 | None:intergenic | 30.0% | |
| ATAAAGCCACAGTTAAGAAT+TGG | + | chr5_3:7595916-7595935 | Msa0795610:intron | 30.0% | |
| TAAAGCCACAGTTAAGAATT+GGG | + | chr5_3:7595917-7595936 | Msa0795610:intron | 30.0% | |
| ! | CTCGATAAGTTCTATCTTTT+CGG | + | chr5_3:7596206-7596225 | Msa0795610:intron | 30.0% |
| ATGGAACTAACTATAGAAGA+TGG | + | chr5_3:7596368-7596387 | Msa0795610:intron | 30.0% | |
| AAAGACAACAAAACTGTAAG+AGG | + | chr5_3:7596553-7596572 | Msa0795610:CDS | 30.0% | |
| AGAAGTCCACAAAAATGATA+TGG | + | chr5_3:7596626-7596645 | Msa0795610:CDS | 30.0% | |
| ! | TTGAGTTTTCTGATCAAAAC+AGG | + | chr5_3:7596988-7597007 | Msa0795610:intron | 30.0% |
| !! | AAAATCACTTGCTATGTTTG+TGG | + | chr5_3:7597097-7597116 | Msa0795610:intron | 30.0% |
| ! | TTTTCTATCTGACCCACAAA+TGG | + | chr5_3:7595373-7595392 | Msa0795610:CDS | 35.0% |
| CAGCAACAACAATAAAAGTG+AGG | - | chr5_3:7595453-7595472 | None:intergenic | 35.0% | |
| !! | CTCACTTTTATTGTTGTTGC+TGG | + | chr5_3:7595451-7595470 | Msa0795610:CDS | 35.0% |
| AAACGGTCAAATAGCATTAC+AGG | - | chr5_3:7595568-7595587 | None:intergenic | 35.0% | |
| CTTATGCCTTTCTTCTCTAT+TGG | + | chr5_3:7595765-7595784 | Msa0795610:intron | 35.0% | |
| AAAGCCACAGTTAAGAATTG+GGG | + | chr5_3:7595918-7595937 | Msa0795610:intron | 35.0% | |
| TCTTCCTGATCTGTCAAAAT+TGG | + | chr5_3:7596336-7596355 | Msa0795610:intron | 35.0% | |
| !!! | ATTTTTTGAAGCCTTAGAGG+TGG | + | chr5_3:7596408-7596427 | Msa0795610:intron | 35.0% |
| !! | GAATCTTCTTTTTCATCTGC+AGG | - | chr5_3:7596457-7596476 | None:intergenic | 35.0% |
| AGTCTCTTCATTTGCTTTCT+TGG | - | chr5_3:7596518-7596537 | None:intergenic | 35.0% | |
| !! | GGTGTTCCATATCATTTTTG+TGG | - | chr5_3:7596635-7596654 | None:intergenic | 35.0% |
| ATTTGTGATGTGCTGAATGA+AGG | + | chr5_3:7596778-7596797 | Msa0795610:CDS | 35.0% | |
| !!! | CTCTCTTCTTGTGTTTTAGT+TGG | - | chr5_3:7596879-7596898 | None:intergenic | 35.0% |
| TAGCTTCTTCAGTCTTCATA+TGG | - | chr5_3:7596911-7596930 | None:intergenic | 35.0% | |
| TGAAGACTGAAGAAGCTAAT+AGG | + | chr5_3:7596913-7596932 | Msa0795610:intron | 35.0% | |
| TCTGATCAAAACAGGTTCAA+AGG | + | chr5_3:7596996-7597015 | Msa0795610:intron | 35.0% | |
| TTGTGGACAAATAAGTCACA+AGG | + | chr5_3:7597114-7597133 | Msa0795610:intron | 35.0% | |
| ! | ATTTCTGCTAGATTTGCTTG+AGG | - | chr5_3:7597189-7597208 | None:intergenic | 35.0% |
| TCAAGCAAATCTAGCAGAAA+TGG | + | chr5_3:7597188-7597207 | Msa0795610:CDS | 35.0% | |
| ! | TTTTCTATCTGACCCACAAA+TGG | + | chr5_3:7595373-7595392 | Msa0795610:CDS | 35.0% |
| CAGCAACAACAATAAAAGTG+AGG | - | chr5_3:7595453-7595472 | None:intergenic | 35.0% | |
| !! | CTCACTTTTATTGTTGTTGC+TGG | + | chr5_3:7595451-7595470 | Msa0795610:CDS | 35.0% |
| AAACGGTCAAATAGCATTAC+AGG | - | chr5_3:7595568-7595587 | None:intergenic | 35.0% | |
| CTTATGCCTTTCTTCTCTAT+TGG | + | chr5_3:7595765-7595784 | Msa0795610:intron | 35.0% | |
| AAAGCCACAGTTAAGAATTG+GGG | + | chr5_3:7595918-7595937 | Msa0795610:intron | 35.0% | |
| TCTTCCTGATCTGTCAAAAT+TGG | + | chr5_3:7596336-7596355 | Msa0795610:intron | 35.0% | |
| !!! | ATTTTTTGAAGCCTTAGAGG+TGG | + | chr5_3:7596408-7596427 | Msa0795610:intron | 35.0% |
| !! | GAATCTTCTTTTTCATCTGC+AGG | - | chr5_3:7596457-7596476 | None:intergenic | 35.0% |
| AGTCTCTTCATTTGCTTTCT+TGG | - | chr5_3:7596518-7596537 | None:intergenic | 35.0% | |
| !! | GGTGTTCCATATCATTTTTG+TGG | - | chr5_3:7596635-7596654 | None:intergenic | 35.0% |
| ATTTGTGATGTGCTGAATGA+AGG | + | chr5_3:7596778-7596797 | Msa0795610:CDS | 35.0% | |
| !!! | CTCTCTTCTTGTGTTTTAGT+TGG | - | chr5_3:7596879-7596898 | None:intergenic | 35.0% |
| TAGCTTCTTCAGTCTTCATA+TGG | - | chr5_3:7596911-7596930 | None:intergenic | 35.0% | |
| TGAAGACTGAAGAAGCTAAT+AGG | + | chr5_3:7596913-7596932 | Msa0795610:intron | 35.0% | |
| TCTGATCAAAACAGGTTCAA+AGG | + | chr5_3:7596996-7597015 | Msa0795610:intron | 35.0% | |
| TTGTGGACAAATAAGTCACA+AGG | + | chr5_3:7597114-7597133 | Msa0795610:intron | 35.0% | |
| ! | ATTTCTGCTAGATTTGCTTG+AGG | - | chr5_3:7597189-7597208 | None:intergenic | 35.0% |
| TCAAGCAAATCTAGCAGAAA+TGG | + | chr5_3:7597188-7597207 | Msa0795610:CDS | 35.0% | |
| AGCAACAGCAAGCAAAATGA+TGG | - | chr5_3:7595665-7595684 | None:intergenic | 40.0% | |
| !!! | TCTATTGGGCCTGTTGTTTT+GGG | + | chr5_3:7595780-7595799 | Msa0795610:intron | 40.0% |
| GTTTCCCCAATTCTTAACTG+TGG | - | chr5_3:7595925-7595944 | None:intergenic | 40.0% | |
| !! | TATCTTCTCAAGAGCATCGA+AGG | - | chr5_3:7595978-7595997 | None:intergenic | 40.0% |
| TCTGTGATTTCCAAAGCCTA+AGG | + | chr5_3:7596062-7596081 | Msa0795610:intron | 40.0% | |
| ! | TTGGTTCGTTGTGTTAACCT+TGG | + | chr5_3:7596104-7596123 | Msa0795610:intron | 40.0% |
| TGGTTCGTTGTGTTAACCTT+GGG | + | chr5_3:7596105-7596124 | Msa0795610:intron | 40.0% | |
| !! | GGTTCCAATTTTGACAGATC+AGG | - | chr5_3:7596343-7596362 | None:intergenic | 40.0% |
| TCAAAATTGGAACCACTCGA+TGG | + | chr5_3:7596349-7596368 | Msa0795610:intron | 40.0% | |
| CTATAGTTAGTTCCATCGAG+TGG | - | chr5_3:7596364-7596383 | None:intergenic | 40.0% | |
| !! | TCTTCTTTTTCATCTGCAGG+AGG | - | chr5_3:7596454-7596473 | None:intergenic | 40.0% |
| AACACCCTGCTGAATAGTTA+TGG | + | chr5_3:7596649-7596668 | Msa0795610:CDS | 40.0% | |
| AGTTATGGCGCTTATAATGC+TGG | + | chr5_3:7596664-7596683 | Msa0795610:CDS | 40.0% | |
| ! | GCTTGATGACAAACCAATCA+TGG | + | chr5_3:7596729-7596748 | Msa0795610:CDS | 40.0% |
| TCATGAATCTGCTCCATGAT+TGG | - | chr5_3:7596745-7596764 | None:intergenic | 40.0% | |
| GAAGATGTGCAAGATACTTC+AGG | + | chr5_3:7596804-7596823 | Msa0795610:CDS | 40.0% | |
| ! | ACTTCAGGCTAATGTGCTTT+TGG | + | chr5_3:7596819-7596838 | Msa0795610:CDS | 40.0% |
| GTACAGCAGAAGAAACAAAC+AGG | + | chr5_3:7597040-7597059 | Msa0795610:CDS | 40.0% | |
| AAACCTTGTCGACAACAAAG+TGG | + | chr5_3:7597242-7597261 | Msa0795610:CDS | 40.0% | |
| AGCAACAGCAAGCAAAATGA+TGG | - | chr5_3:7595665-7595684 | None:intergenic | 40.0% | |
| !!! | TCTATTGGGCCTGTTGTTTT+GGG | + | chr5_3:7595780-7595799 | Msa0795610:intron | 40.0% |
| GTTTCCCCAATTCTTAACTG+TGG | - | chr5_3:7595925-7595944 | None:intergenic | 40.0% | |
| !! | TATCTTCTCAAGAGCATCGA+AGG | - | chr5_3:7595978-7595997 | None:intergenic | 40.0% |
| TCTGTGATTTCCAAAGCCTA+AGG | + | chr5_3:7596062-7596081 | Msa0795610:intron | 40.0% | |
| ! | TTGGTTCGTTGTGTTAACCT+TGG | + | chr5_3:7596104-7596123 | Msa0795610:intron | 40.0% |
| TGGTTCGTTGTGTTAACCTT+GGG | + | chr5_3:7596105-7596124 | Msa0795610:intron | 40.0% | |
| !! | GGTTCCAATTTTGACAGATC+AGG | - | chr5_3:7596343-7596362 | None:intergenic | 40.0% |
| TCAAAATTGGAACCACTCGA+TGG | + | chr5_3:7596349-7596368 | Msa0795610:intron | 40.0% | |
| CTATAGTTAGTTCCATCGAG+TGG | - | chr5_3:7596364-7596383 | None:intergenic | 40.0% | |
| !! | TCTTCTTTTTCATCTGCAGG+AGG | - | chr5_3:7596454-7596473 | None:intergenic | 40.0% |
| AACACCCTGCTGAATAGTTA+TGG | + | chr5_3:7596649-7596668 | Msa0795610:CDS | 40.0% | |
| AGTTATGGCGCTTATAATGC+TGG | + | chr5_3:7596664-7596683 | Msa0795610:CDS | 40.0% | |
| ! | GCTTGATGACAAACCAATCA+TGG | + | chr5_3:7596729-7596748 | Msa0795610:CDS | 40.0% |
| TCATGAATCTGCTCCATGAT+TGG | - | chr5_3:7596745-7596764 | None:intergenic | 40.0% | |
| GAAGATGTGCAAGATACTTC+AGG | + | chr5_3:7596804-7596823 | Msa0795610:CDS | 40.0% | |
| ! | ACTTCAGGCTAATGTGCTTT+TGG | + | chr5_3:7596819-7596838 | Msa0795610:CDS | 40.0% |
| GTACAGCAGAAGAAACAAAC+AGG | + | chr5_3:7597040-7597059 | Msa0795610:CDS | 40.0% | |
| AAACCTTGTCGACAACAAAG+TGG | + | chr5_3:7597242-7597261 | Msa0795610:CDS | 40.0% | |
| GTGCTTGTTCCTGTTACATC+TGG | + | chr5_3:7595525-7595544 | Msa0795610:intron | 45.0% | |
| AGTGGTAGACCAGATGTAAC+AGG | - | chr5_3:7595537-7595556 | None:intergenic | 45.0% | |
| GCATTACAGGTAAGAGCAAG+TGG | - | chr5_3:7595555-7595574 | None:intergenic | 45.0% | |
| ACGGATAGTGCAGCCAAAAA+CGG | - | chr5_3:7595585-7595604 | None:intergenic | 45.0% | |
| TTTGGCTGCACTATCCGTAT+TGG | + | chr5_3:7595587-7595606 | Msa0795610:intron | 45.0% | |
| TGAGAGAGCTGCTACCAATA+CGG | - | chr5_3:7595604-7595623 | None:intergenic | 45.0% | |
| GACTCGATGTTAAGAGCAAG+TGG | - | chr5_3:7595636-7595655 | None:intergenic | 45.0% | |
| ACAGGCCCAATAGAGAAGAA+AGG | - | chr5_3:7595774-7595793 | None:intergenic | 45.0% | |
| !! | CTCTATTGGGCCTGTTGTTT+TGG | + | chr5_3:7595779-7595798 | Msa0795610:intron | 45.0% |
| GGTTCGTTGTGTTAACCTTG+GGG | + | chr5_3:7596106-7596125 | Msa0795610:intron | 45.0% | |
| TTTGCTTTCTTGGTCCCTGT+GGG | - | chr5_3:7596508-7596527 | None:intergenic | 45.0% | |
| ATTTGCTTTCTTGGTCCCTG+TGG | - | chr5_3:7596509-7596528 | None:intergenic | 45.0% | |
| AGCGCCATAACTATTCAGCA+GGG | - | chr5_3:7596656-7596675 | None:intergenic | 45.0% | |
| AAGCGCCATAACTATTCAGC+AGG | - | chr5_3:7596657-7596676 | None:intergenic | 45.0% | |
| ! | TGGAAAGAAGAAGTGTGTCG+TGG | + | chr5_3:7596684-7596703 | Msa0795610:CDS | 45.0% |
| ! | GGAAAGAAGAAGTGTGTCGT+GGG | + | chr5_3:7596685-7596704 | Msa0795610:CDS | 45.0% |
| ! | GAAAGAAGAAGTGTGTCGTG+GGG | + | chr5_3:7596686-7596705 | Msa0795610:CDS | 45.0% |
| ! | CTTGAGGTGCAGAAGGATTT+TGG | - | chr5_3:7597173-7597192 | None:intergenic | 45.0% |
| ! | AGATTTGCTTGAGGTGCAGA+AGG | - | chr5_3:7597180-7597199 | None:intergenic | 45.0% |
| ! | AGTCCACTTTGTTGTCGACA+AGG | - | chr5_3:7597248-7597267 | None:intergenic | 45.0% |
| GTGCTTGTTCCTGTTACATC+TGG | + | chr5_3:7595525-7595544 | Msa0795610:intron | 45.0% | |
| AGTGGTAGACCAGATGTAAC+AGG | - | chr5_3:7595537-7595556 | None:intergenic | 45.0% | |
| GCATTACAGGTAAGAGCAAG+TGG | - | chr5_3:7595555-7595574 | None:intergenic | 45.0% | |
| ACGGATAGTGCAGCCAAAAA+CGG | - | chr5_3:7595585-7595604 | None:intergenic | 45.0% | |
| TTTGGCTGCACTATCCGTAT+TGG | + | chr5_3:7595587-7595606 | Msa0795610:intron | 45.0% | |
| TGAGAGAGCTGCTACCAATA+CGG | - | chr5_3:7595604-7595623 | None:intergenic | 45.0% | |
| GACTCGATGTTAAGAGCAAG+TGG | - | chr5_3:7595636-7595655 | None:intergenic | 45.0% | |
| ACAGGCCCAATAGAGAAGAA+AGG | - | chr5_3:7595774-7595793 | None:intergenic | 45.0% | |
| !! | CTCTATTGGGCCTGTTGTTT+TGG | + | chr5_3:7595779-7595798 | Msa0795610:intron | 45.0% |
| GGTTCGTTGTGTTAACCTTG+GGG | + | chr5_3:7596106-7596125 | Msa0795610:intron | 45.0% | |
| TTTGCTTTCTTGGTCCCTGT+GGG | - | chr5_3:7596508-7596527 | None:intergenic | 45.0% | |
| ATTTGCTTTCTTGGTCCCTG+TGG | - | chr5_3:7596509-7596528 | None:intergenic | 45.0% | |
| AGCGCCATAACTATTCAGCA+GGG | - | chr5_3:7596656-7596675 | None:intergenic | 45.0% | |
| AAGCGCCATAACTATTCAGC+AGG | - | chr5_3:7596657-7596676 | None:intergenic | 45.0% | |
| ! | TGGAAAGAAGAAGTGTGTCG+TGG | + | chr5_3:7596684-7596703 | Msa0795610:CDS | 45.0% |
| ! | GGAAAGAAGAAGTGTGTCGT+GGG | + | chr5_3:7596685-7596704 | Msa0795610:CDS | 45.0% |
| ! | GAAAGAAGAAGTGTGTCGTG+GGG | + | chr5_3:7596686-7596705 | Msa0795610:CDS | 45.0% |
| ! | CTTGAGGTGCAGAAGGATTT+TGG | - | chr5_3:7597173-7597192 | None:intergenic | 45.0% |
| ! | AGATTTGCTTGAGGTGCAGA+AGG | - | chr5_3:7597180-7597199 | None:intergenic | 45.0% |
| ! | AGTCCACTTTGTTGTCGACA+AGG | - | chr5_3:7597248-7597267 | None:intergenic | 45.0% |
| AAGCCCAAGCCCAAAACAAC+AGG | - | chr5_3:7595792-7595811 | None:intergenic | 50.0% | |
| TGATGAGAGGGCTGATCTGT+AGG | + | chr5_3:7595888-7595907 | Msa0795610:intron | 50.0% | |
| GTTGTGTTAACCTTGGGGAG+CGG | + | chr5_3:7596111-7596130 | Msa0795610:intron | 50.0% | |
| TTCTGGATTGCACGTCTAGC+CGG | + | chr5_3:7596141-7596160 | Msa0795610:intron | 50.0% | |
| TCTAGCCGGATTTCGCTTTC+TGG | + | chr5_3:7596155-7596174 | Msa0795610:intron | 50.0% | |
| CTAGCCGGATTTCGCTTTCT+GGG | + | chr5_3:7596156-7596175 | Msa0795610:intron | 50.0% | |
| ACTGCCCAGAAAGCGAAATC+CGG | - | chr5_3:7596163-7596182 | None:intergenic | 50.0% | |
| CAGTGGTAACCACAGCACAA+CGG | + | chr5_3:7596179-7596198 | Msa0795610:intron | 50.0% | |
| TCGAGAATTCCGTTGTGCTG+TGG | - | chr5_3:7596191-7596210 | None:intergenic | 50.0% | |
| CAACGCGTAATCCACCTCTA+AGG | - | chr5_3:7596422-7596441 | None:intergenic | 50.0% | |
| TTGCGATAGTCACTCCAGGA+GGG | - | chr5_3:7596856-7596875 | None:intergenic | 50.0% | |
| TTGGTTGCGATAGTCACTCC+AGG | - | chr5_3:7596860-7596879 | None:intergenic | 50.0% | |
| ACAAGGCATACCTTCTGCAC+AGG | + | chr5_3:7597131-7597150 | Msa0795610:intron | 50.0% | |
| CAAGGCATACCTTCTGCACA+GGG | + | chr5_3:7597132-7597151 | Msa0795610:intron | 50.0% | |
| ! | TTTTCTCGTCCCTGTGCAGA+AGG | - | chr5_3:7597144-7597163 | None:intergenic | 50.0% |
| AAGCCCAAGCCCAAAACAAC+AGG | - | chr5_3:7595792-7595811 | None:intergenic | 50.0% | |
| TGATGAGAGGGCTGATCTGT+AGG | + | chr5_3:7595888-7595907 | Msa0795610:intron | 50.0% | |
| GTTGTGTTAACCTTGGGGAG+CGG | + | chr5_3:7596111-7596130 | Msa0795610:intron | 50.0% | |
| TTCTGGATTGCACGTCTAGC+CGG | + | chr5_3:7596141-7596160 | Msa0795610:intron | 50.0% | |
| TCTAGCCGGATTTCGCTTTC+TGG | + | chr5_3:7596155-7596174 | Msa0795610:intron | 50.0% | |
| CTAGCCGGATTTCGCTTTCT+GGG | + | chr5_3:7596156-7596175 | Msa0795610:intron | 50.0% | |
| ACTGCCCAGAAAGCGAAATC+CGG | - | chr5_3:7596163-7596182 | None:intergenic | 50.0% | |
| CAGTGGTAACCACAGCACAA+CGG | + | chr5_3:7596179-7596198 | Msa0795610:intron | 50.0% | |
| TCGAGAATTCCGTTGTGCTG+TGG | - | chr5_3:7596191-7596210 | None:intergenic | 50.0% | |
| CAACGCGTAATCCACCTCTA+AGG | - | chr5_3:7596422-7596441 | None:intergenic | 50.0% | |
| TTGCGATAGTCACTCCAGGA+GGG | - | chr5_3:7596856-7596875 | None:intergenic | 50.0% | |
| TTGGTTGCGATAGTCACTCC+AGG | - | chr5_3:7596860-7596879 | None:intergenic | 50.0% | |
| ACAAGGCATACCTTCTGCAC+AGG | + | chr5_3:7597131-7597150 | Msa0795610:intron | 50.0% | |
| CAAGGCATACCTTCTGCACA+GGG | + | chr5_3:7597132-7597151 | Msa0795610:intron | 50.0% | |
| ! | TTTTCTCGTCCCTGTGCAGA+AGG | - | chr5_3:7597144-7597163 | None:intergenic | 50.0% |
| ! | TTGGTAGCAGCTCTCTCAGC+TGG | + | chr5_3:7595606-7595625 | Msa0795610:intron | 55.0% |
| !!! | TGGGCCTGTTGTTTTGGGCT+TGG | + | chr5_3:7595785-7595804 | Msa0795610:intron | 55.0% |
| !!! | GGGCCTGTTGTTTTGGGCTT+GGG | + | chr5_3:7595786-7595805 | Msa0795610:intron | 55.0% |
| CCAATGAACACGTGCACTCG+TGG | - | chr5_3:7596088-7596107 | None:intergenic | 55.0% | |
| CCACGAGTGCACGTGTTCAT+TGG | + | chr5_3:7596085-7596104 | Msa0795610:intron | 55.0% | |
| TGTTAACCTTGGGGAGCGGT+CGG | + | chr5_3:7596115-7596134 | Msa0795610:intron | 55.0% | |
| GGATTTCGCTTTCTGGGCAG+TGG | + | chr5_3:7596162-7596181 | Msa0795610:intron | 55.0% | |
| ! | TGGGAAGAGGTGTGGCAACA+GGG | - | chr5_3:7596489-7596508 | None:intergenic | 55.0% |
| TTGCCACACCTCTTCCCACA+GGG | + | chr5_3:7596491-7596510 | Msa0795610:CDS | 55.0% | |
| TTCTTGGTCCCTGTGGGAAG+AGG | - | chr5_3:7596502-7596521 | None:intergenic | 55.0% | |
| ! | AGAAGTGTGTCGTGGGGAAC+TGG | + | chr5_3:7596692-7596711 | Msa0795610:CDS | 55.0% |
| TGGAGAAATTCCCACCCTCC+TGG | + | chr5_3:7596839-7596858 | Msa0795610:CDS | 55.0% | |
| GATAGTCACTCCAGGAGGGT+GGG | - | chr5_3:7596852-7596871 | None:intergenic | 55.0% | |
| GTTGCGATAGTCACTCCAGG+AGG | - | chr5_3:7596857-7596876 | None:intergenic | 55.0% | |
| GATCGCTGCTGTAGTAGCAG+AGG | + | chr5_3:7597218-7597237 | Msa0795610:CDS | 55.0% | |
| ! | TTGGTAGCAGCTCTCTCAGC+TGG | + | chr5_3:7595606-7595625 | Msa0795610:intron | 55.0% |
| !!! | TGGGCCTGTTGTTTTGGGCT+TGG | + | chr5_3:7595785-7595804 | Msa0795610:intron | 55.0% |
| !!! | GGGCCTGTTGTTTTGGGCTT+GGG | + | chr5_3:7595786-7595805 | Msa0795610:intron | 55.0% |
| CCAATGAACACGTGCACTCG+TGG | - | chr5_3:7596088-7596107 | None:intergenic | 55.0% | |
| CCACGAGTGCACGTGTTCAT+TGG | + | chr5_3:7596085-7596104 | Msa0795610:intron | 55.0% | |
| TGTTAACCTTGGGGAGCGGT+CGG | + | chr5_3:7596115-7596134 | Msa0795610:intron | 55.0% | |
| GGATTTCGCTTTCTGGGCAG+TGG | + | chr5_3:7596162-7596181 | Msa0795610:intron | 55.0% | |
| ! | TGGGAAGAGGTGTGGCAACA+GGG | - | chr5_3:7596489-7596508 | None:intergenic | 55.0% |
| TTGCCACACCTCTTCCCACA+GGG | + | chr5_3:7596491-7596510 | Msa0795610:CDS | 55.0% | |
| TTCTTGGTCCCTGTGGGAAG+AGG | - | chr5_3:7596502-7596521 | None:intergenic | 55.0% | |
| ! | AGAAGTGTGTCGTGGGGAAC+TGG | + | chr5_3:7596692-7596711 | Msa0795610:CDS | 55.0% |
| TGGAGAAATTCCCACCCTCC+TGG | + | chr5_3:7596839-7596858 | Msa0795610:CDS | 55.0% | |
| GATAGTCACTCCAGGAGGGT+GGG | - | chr5_3:7596852-7596871 | None:intergenic | 55.0% | |
| GTTGCGATAGTCACTCCAGG+AGG | - | chr5_3:7596857-7596876 | None:intergenic | 55.0% | |
| GATCGCTGCTGTAGTAGCAG+AGG | + | chr5_3:7597218-7597237 | Msa0795610:CDS | 55.0% | |
| ! | GCACTCGTGGCCTTAGGCTT+TGG | - | chr5_3:7596075-7596094 | None:intergenic | 60.0% |
| ACACGTGCACTCGTGGCCTT+AGG | - | chr5_3:7596081-7596100 | None:intergenic | 60.0% | |
| ! | GGGAAGAGGTGTGGCAACAG+GGG | - | chr5_3:7596488-7596507 | None:intergenic | 60.0% |
| ! | GTGGGAAGAGGTGTGGCAAC+AGG | - | chr5_3:7596490-7596509 | None:intergenic | 60.0% |
| GTTGCCACACCTCTTCCCAC+AGG | + | chr5_3:7596490-7596509 | Msa0795610:CDS | 60.0% | |
| CGATAGTCACTCCAGGAGGG+TGG | - | chr5_3:7596853-7596872 | None:intergenic | 60.0% | |
| ! | GCACTCGTGGCCTTAGGCTT+TGG | - | chr5_3:7596075-7596094 | None:intergenic | 60.0% |
| ACACGTGCACTCGTGGCCTT+AGG | - | chr5_3:7596081-7596100 | None:intergenic | 60.0% | |
| ! | GGGAAGAGGTGTGGCAACAG+GGG | - | chr5_3:7596488-7596507 | None:intergenic | 60.0% |
| ! | GTGGGAAGAGGTGTGGCAAC+AGG | - | chr5_3:7596490-7596509 | None:intergenic | 60.0% |
| GTTGCCACACCTCTTCCCAC+AGG | + | chr5_3:7596490-7596509 | Msa0795610:CDS | 60.0% | |
| CGATAGTCACTCCAGGAGGG+TGG | - | chr5_3:7596853-7596872 | None:intergenic | 60.0% | |
| GAAATGCCGACCGCTCCCCA+AGG | - | chr5_3:7596124-7596143 | None:intergenic | 65.0% | |
| TGGGGAGCGGTCGGCATTTC+TGG | + | chr5_3:7596124-7596143 | Msa0795610:intron | 65.0% | |
| GGTCCCTGTGGGAAGAGGTG+TGG | - | chr5_3:7596497-7596516 | None:intergenic | 65.0% | |
| GAAATGCCGACCGCTCCCCA+AGG | - | chr5_3:7596124-7596143 | None:intergenic | 65.0% | |
| TGGGGAGCGGTCGGCATTTC+TGG | + | chr5_3:7596124-7596143 | Msa0795610:intron | 65.0% | |
| GGTCCCTGTGGGAAGAGGTG+TGG | - | chr5_3:7596497-7596516 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 7595365 | 7597269 | 7595365 | ID=Msa0795610;Name=Msa0795610 |
| chr5_3 | mRNA | 7595365 | 7597269 | 7595365 | ID=Msa0795610-mRNA-1;Parent=Msa0795610;Name=Msa0795610-mRNA-1;_AED=0.86;_eAED=0.87;_QI=0|0|0|0.5|0.66|0.75|4|0|259 |
| chr5_3 | exon | 7595365 | 7595491 | 7595365 | ID=Msa0795610-mRNA-1:exon:3159;Parent=Msa0795610-mRNA-1 |
| chr5_3 | exon | 7596419 | 7596902 | 7596419 | ID=Msa0795610-mRNA-1:exon:3160;Parent=Msa0795610-mRNA-1 |
| chr5_3 | exon | 7597010 | 7597061 | 7597010 | ID=Msa0795610-mRNA-1:exon:3161;Parent=Msa0795610-mRNA-1 |
| chr5_3 | exon | 7597153 | 7597269 | 7597153 | ID=Msa0795610-mRNA-1:exon:3162;Parent=Msa0795610-mRNA-1 |
| chr5_3 | CDS | 7595365 | 7595491 | 7595365 | ID=Msa0795610-mRNA-1:cds;Parent=Msa0795610-mRNA-1 |
| chr5_3 | CDS | 7596419 | 7596902 | 7596419 | ID=Msa0795610-mRNA-1:cds;Parent=Msa0795610-mRNA-1 |
| chr5_3 | CDS | 7597010 | 7597061 | 7597010 | ID=Msa0795610-mRNA-1:cds;Parent=Msa0795610-mRNA-1 |
| chr5_3 | CDS | 7597153 | 7597269 | 7597153 | ID=Msa0795610-mRNA-1:cds;Parent=Msa0795610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
