Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0832850 | XP_028181545.1 | 71.508 | 179 | 40 | 2 | 32 | 204 | 30 | 203 | 5.62e-87 | 267 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0832850 | A0A2U1N9C7 | 64.162 | 173 | 54 | 2 | 32 | 204 | 30 | 194 | 4.78e-71 | 231 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0795610 | Msa0832850 | 0.953901 | 9.838240e-112 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0832850 | MtrunA17_Chr8g0391561 | 31.679 | 262 | 104 | 8 | 67 | 254 | 65 | 325 | 2.80e-27 | 109 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0832850 | AT4G00980.1 | 24.841 | 157 | 111 | 3 | 42 | 197 | 215 | 365 | 2.04e-12 | 67.0 |
Find 43 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTCTCTTCATTTGCTTTCT+TGG | 0.069054 | 5_4:+6013935 | None:intergenic |
| CTTGAGGTGCAGAAGGATTT+TGG | 0.199359 | 5_4:+6013280 | None:intergenic |
| ACTTCAGGCTAATGTGCTTT+TGG | 0.266661 | 5_4:-6013631 | Msa0832850:CDS |
| GTGGGAAGAGGTGTGGCAAC+AGG | 0.314445 | 5_4:+6013963 | None:intergenic |
| TCAAGCAAATCTAGCAGAAA+TGG | 0.366686 | 5_4:-6013262 | Msa0832850:CDS |
| TCATGAATCTGCTCCATGAT+TGG | 0.393327 | 5_4:+6013708 | None:intergenic |
| AGAAGTGTGTCGTGGGGAAC+TGG | 0.411463 | 5_4:-6013758 | Msa0832850:CDS |
| AAAGACAACAAAACTGTAAG+AGG | 0.415300 | 5_4:-6013897 | Msa0832850:CDS |
| ATCATTTCATGTACATCTAT+AGG | 0.433388 | 5_4:+6014967 | None:intergenic |
| TGGAGAAATTCCCACCCTCC+TGG | 0.439000 | 5_4:-6013611 | Msa0832850:CDS |
| GAAGATGTGCAAGATACTTC+AGG | 0.444881 | 5_4:-6013646 | Msa0832850:CDS |
| TACTTAATGATGCCATTTGT+GGG | 0.445169 | 5_4:+6015065 | None:intergenic |
| ATACTTAATGATGCCATTTG+TGG | 0.452730 | 5_4:+6015064 | None:intergenic |
| CAACGCGTAATCCACCTCTA+AGG | 0.461634 | 5_4:+6014031 | None:intergenic |
| TTCTTGGTCCCTGTGGGAAG+AGG | 0.473109 | 5_4:+6013951 | None:intergenic |
| AAGCGCCATAACTATTCAGC+AGG | 0.488579 | 5_4:+6013796 | None:intergenic |
| TCTGATCAAAACAGGTTCAA+AGG | 0.493272 | 5_4:-6013454 | Msa0832850:intron |
| GCTTGATGACAAACCAATCA+TGG | 0.493311 | 5_4:-6013721 | Msa0832850:CDS |
| GTTGCCACACCTCTTCCCAC+AGG | 0.494858 | 5_4:-6013960 | Msa0832850:CDS |
| AGTTATGGCGCTTATAATGC+TGG | 0.495336 | 5_4:-6013786 | Msa0832850:CDS |
| TTTGCTTTCTTGGTCCCTGT+GGG | 0.503167 | 5_4:+6013945 | None:intergenic |
| ATTTGTGATGTGCTGAATGA+AGG | 0.505130 | 5_4:-6013672 | Msa0832850:CDS |
| AACACCCTGCTGAATAGTTA+TGG | 0.516082 | 5_4:-6013801 | Msa0832850:CDS |
| ATTTGCTTTCTTGGTCCCTG+TGG | 0.516971 | 5_4:+6013944 | None:intergenic |
| AGATTTGCTTGAGGTGCAGA+AGG | 0.537548 | 5_4:+6013273 | None:intergenic |
| GTACAGCAGAAGAAACAAAC+AGG | 0.537733 | 5_4:-6013410 | Msa0832850:intron |
| TGGGAAGAGGTGTGGCAACA+GGG | 0.544893 | 5_4:+6013964 | None:intergenic |
| TTGCCACACCTCTTCCCACA+GGG | 0.549622 | 5_4:-6013959 | Msa0832850:CDS |
| TTGGTTGCGATAGTCACTCC+AGG | 0.574791 | 5_4:+6013593 | None:intergenic |
| ATTTCTGCTAGATTTGCTTG+AGG | 0.585956 | 5_4:+6013264 | None:intergenic |
| GGGAAGAGGTGTGGCAACAG+GGG | 0.608846 | 5_4:+6013965 | None:intergenic |
| GGAAAGAAGAAGTGTGTCGT+GGG | 0.613140 | 5_4:-6013765 | Msa0832850:CDS |
| AGTCCACTTTGTTGTCGACA+AGG | 0.617418 | 5_4:+6013205 | None:intergenic |
| GATAGTCACTCCAGGAGGGT+GGG | 0.630300 | 5_4:+6013601 | None:intergenic |
| GGTCCCTGTGGGAAGAGGTG+TGG | 0.632265 | 5_4:+6013956 | None:intergenic |
| GATCGCTGCTGTAGTAGCAG+AGG | 0.646462 | 5_4:-6013232 | Msa0832850:CDS |
| CAGCAACAACAATAAAAGTG+AGG | 0.654208 | 5_4:+6015000 | None:intergenic |
| TTGCGATAGTCACTCCAGGA+GGG | 0.660542 | 5_4:+6013597 | None:intergenic |
| AAACCTTGTCGACAACAAAG+TGG | 0.672050 | 5_4:-6013208 | Msa0832850:CDS |
| AGCGCCATAACTATTCAGCA+GGG | 0.689172 | 5_4:+6013797 | None:intergenic |
| TGGAAAGAAGAAGTGTGTCG+TGG | 0.689972 | 5_4:-6013766 | Msa0832850:CDS |
| GTTGCGATAGTCACTCCAGG+AGG | 0.711188 | 5_4:+6013596 | None:intergenic |
| GAAAGAAGAAGTGTGTCGTG+GGG | 0.717135 | 5_4:-6013764 | Msa0832850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAAAATCAATTGATGAG+AGG | - | chr5_4:6013713-6013732 | Msa0832850:CDS | 20.0% |
| !! | TTAAAAATCAATTGATGAGA+GGG | - | chr5_4:6013714-6013733 | Msa0832850:CDS | 20.0% |
| !! | ATTAAAAATCAATTGATGAG+AGG | - | chr5_4:6013713-6013732 | Msa0832850:CDS | 20.0% |
| !! | TTAAAAATCAATTGATGAGA+GGG | - | chr5_4:6013714-6013733 | Msa0832850:CDS | 20.0% |
| ! | ATCATTTCATGTACATCTAT+AGG | + | chr5_4:6013324-6013343 | None:intergenic | 25.0% |
| ! | GTTAATTTACTAACTGATGT+GGG | + | chr5_4:6013574-6013593 | None:intergenic | 25.0% |
| ! | AAAATATTGAGCTGTAGAAA+TGG | + | chr5_4:6013684-6013703 | None:intergenic | 25.0% |
| !!! | TCTACAGCTCAATATTTTAA+CGG | - | chr5_4:6013686-6013705 | Msa0832850:CDS | 25.0% |
| !!! | TATATTTTTTGAAGCCTTAG+AGG | - | chr5_4:6014243-6014262 | Msa0832850:intron | 25.0% |
| ! | AAAAGTCCACAAAAATGATA+TGG | - | chr5_4:6014464-6014483 | Msa0832850:intron | 25.0% |
| ! | ATGACAAAAAGATTCAGAAA+AGG | - | chr5_4:6014912-6014931 | Msa0832850:intron | 25.0% |
| ! | ATCATTTCATGTACATCTAT+AGG | + | chr5_4:6013324-6013343 | None:intergenic | 25.0% |
| ! | GTTAATTTACTAACTGATGT+GGG | + | chr5_4:6013574-6013593 | None:intergenic | 25.0% |
| ! | AAAATATTGAGCTGTAGAAA+TGG | + | chr5_4:6013684-6013703 | None:intergenic | 25.0% |
| !!! | TCTACAGCTCAATATTTTAA+CGG | - | chr5_4:6013686-6013705 | Msa0832850:CDS | 25.0% |
| !!! | TATATTTTTTGAAGCCTTAG+AGG | - | chr5_4:6014243-6014262 | Msa0832850:intron | 25.0% |
| ! | AAAAGTCCACAAAAATGATA+TGG | - | chr5_4:6014464-6014483 | Msa0832850:intron | 25.0% |
| ! | ATGACAAAAAGATTCAGAAA+AGG | - | chr5_4:6014912-6014931 | Msa0832850:intron | 25.0% |
| ! | TACTTAATGATGCCATTTGT+GGG | + | chr5_4:6013226-6013245 | None:intergenic | 30.0% |
| ! | ATACTTAATGATGCCATTTG+TGG | + | chr5_4:6013227-6013246 | None:intergenic | 30.0% |
| AATGATGTTTAGCATTACAC+AGG | - | chr5_4:6013338-6013357 | Msa0832850:intron | 30.0% | |
| !! | TAATGCTATTTGACCGTTTT+TGG | - | chr5_4:6013407-6013426 | Msa0832850:intron | 30.0% |
| GGTTAATTTACTAACTGATG+TGG | + | chr5_4:6013575-6013594 | None:intergenic | 30.0% | |
| ! | AGAAAGGCATAAGAAAAAGA+TGG | + | chr5_4:6013596-6013615 | None:intergenic | 30.0% |
| TTATGCCTTTCTTCTCTATT+GGG | - | chr5_4:6013604-6013623 | Msa0832850:CDS | 30.0% | |
| ATCAAGCAAAACTGAAGAAA+AGG | + | chr5_4:6013660-6013679 | None:intergenic | 30.0% | |
| ATAAAGCCACAGTTAAGAAT+TGG | - | chr5_4:6013754-6013773 | Msa0832850:CDS | 30.0% | |
| TAAAGCCACAGTTAAGAATT+GGG | - | chr5_4:6013755-6013774 | Msa0832850:CDS | 30.0% | |
| ! | CTCGATAAGTTCTATCTTTT+CGG | - | chr5_4:6014044-6014063 | Msa0832850:intron | 30.0% |
| ATGGAACTAACTATAGAAGA+TGG | - | chr5_4:6014206-6014225 | Msa0832850:intron | 30.0% | |
| AAAGACAACAAAACTGTAAG+AGG | - | chr5_4:6014391-6014410 | Msa0832850:intron | 30.0% | |
| ! | TTGAGTTTTCTGATCAAAAC+AGG | - | chr5_4:6014826-6014845 | Msa0832850:intron | 30.0% |
| !! | AAAATCACTTGCTATGTTTG+TGG | - | chr5_4:6014935-6014954 | Msa0832850:intron | 30.0% |
| ! | TACTTAATGATGCCATTTGT+GGG | + | chr5_4:6013226-6013245 | None:intergenic | 30.0% |
| ! | ATACTTAATGATGCCATTTG+TGG | + | chr5_4:6013227-6013246 | None:intergenic | 30.0% |
| AATGATGTTTAGCATTACAC+AGG | - | chr5_4:6013338-6013357 | Msa0832850:intron | 30.0% | |
| !! | TAATGCTATTTGACCGTTTT+TGG | - | chr5_4:6013407-6013426 | Msa0832850:intron | 30.0% |
| GGTTAATTTACTAACTGATG+TGG | + | chr5_4:6013575-6013594 | None:intergenic | 30.0% | |
| ! | AGAAAGGCATAAGAAAAAGA+TGG | + | chr5_4:6013596-6013615 | None:intergenic | 30.0% |
| TTATGCCTTTCTTCTCTATT+GGG | - | chr5_4:6013604-6013623 | Msa0832850:CDS | 30.0% | |
| ATCAAGCAAAACTGAAGAAA+AGG | + | chr5_4:6013660-6013679 | None:intergenic | 30.0% | |
| ATAAAGCCACAGTTAAGAAT+TGG | - | chr5_4:6013754-6013773 | Msa0832850:CDS | 30.0% | |
| TAAAGCCACAGTTAAGAATT+GGG | - | chr5_4:6013755-6013774 | Msa0832850:CDS | 30.0% | |
| ! | CTCGATAAGTTCTATCTTTT+CGG | - | chr5_4:6014044-6014063 | Msa0832850:intron | 30.0% |
| ATGGAACTAACTATAGAAGA+TGG | - | chr5_4:6014206-6014225 | Msa0832850:intron | 30.0% | |
| AAAGACAACAAAACTGTAAG+AGG | - | chr5_4:6014391-6014410 | Msa0832850:intron | 30.0% | |
| ! | TTGAGTTTTCTGATCAAAAC+AGG | - | chr5_4:6014826-6014845 | Msa0832850:intron | 30.0% |
| !! | AAAATCACTTGCTATGTTTG+TGG | - | chr5_4:6014935-6014954 | Msa0832850:intron | 30.0% |
| ! | TTTTCTATCTGACCCACAAA+TGG | - | chr5_4:6013211-6013230 | Msa0832850:CDS | 35.0% |
| CAGCAACAACAATAAAAGTG+AGG | + | chr5_4:6013291-6013310 | None:intergenic | 35.0% | |
| !! | CTCACTTTTATTGTTGTTGC+TGG | - | chr5_4:6013289-6013308 | Msa0832850:CDS | 35.0% |
| AAACGGTCAAATAGCATTAC+AGG | + | chr5_4:6013406-6013425 | None:intergenic | 35.0% | |
| CTTATGCCTTTCTTCTCTAT+TGG | - | chr5_4:6013603-6013622 | Msa0832850:CDS | 35.0% | |
| AAAGCCACAGTTAAGAATTG+GGG | - | chr5_4:6013756-6013775 | Msa0832850:CDS | 35.0% | |
| TCTTCCTGATCTGTCAAAAT+TGG | - | chr5_4:6014174-6014193 | Msa0832850:intron | 35.0% | |
| !!! | ATTTTTTGAAGCCTTAGAGG+TGG | - | chr5_4:6014246-6014265 | Msa0832850:intron | 35.0% |
| !! | GAATCTTCTTTTTCATCTGC+AGG | + | chr5_4:6014295-6014314 | None:intergenic | 35.0% |
| AGTCTCTTCATTTGCTTTCT+TGG | + | chr5_4:6014356-6014375 | None:intergenic | 35.0% | |
| !! | GGTGTTCCATATCATTTTTG+TGG | + | chr5_4:6014473-6014492 | None:intergenic | 35.0% |
| ATTTGTGATGTGCTGAATGA+AGG | - | chr5_4:6014616-6014635 | Msa0832850:intron | 35.0% | |
| !!! | CTCTCTTCTTGTGTTTTAGT+TGG | + | chr5_4:6014717-6014736 | None:intergenic | 35.0% |
| TAGCTTCTTCAGTCTTCATA+TGG | + | chr5_4:6014749-6014768 | None:intergenic | 35.0% | |
| TGAAGACTGAAGAAGCTAAT+AGG | - | chr5_4:6014751-6014770 | Msa0832850:intron | 35.0% | |
| TCTGATCAAAACAGGTTCAA+AGG | - | chr5_4:6014834-6014853 | Msa0832850:intron | 35.0% | |
| TTGTGGACAAATAAGTCACA+AGG | - | chr5_4:6014952-6014971 | Msa0832850:intron | 35.0% | |
| ! | ATTTCTGCTAGATTTGCTTG+AGG | + | chr5_4:6015027-6015046 | None:intergenic | 35.0% |
| TCAAGCAAATCTAGCAGAAA+TGG | - | chr5_4:6015026-6015045 | Msa0832850:CDS | 35.0% | |
| ! | TTTTCTATCTGACCCACAAA+TGG | - | chr5_4:6013211-6013230 | Msa0832850:CDS | 35.0% |
| CAGCAACAACAATAAAAGTG+AGG | + | chr5_4:6013291-6013310 | None:intergenic | 35.0% | |
| !! | CTCACTTTTATTGTTGTTGC+TGG | - | chr5_4:6013289-6013308 | Msa0832850:CDS | 35.0% |
| AAACGGTCAAATAGCATTAC+AGG | + | chr5_4:6013406-6013425 | None:intergenic | 35.0% | |
| CTTATGCCTTTCTTCTCTAT+TGG | - | chr5_4:6013603-6013622 | Msa0832850:CDS | 35.0% | |
| AAAGCCACAGTTAAGAATTG+GGG | - | chr5_4:6013756-6013775 | Msa0832850:CDS | 35.0% | |
| TCTTCCTGATCTGTCAAAAT+TGG | - | chr5_4:6014174-6014193 | Msa0832850:intron | 35.0% | |
| !!! | ATTTTTTGAAGCCTTAGAGG+TGG | - | chr5_4:6014246-6014265 | Msa0832850:intron | 35.0% |
| !! | GAATCTTCTTTTTCATCTGC+AGG | + | chr5_4:6014295-6014314 | None:intergenic | 35.0% |
| AGTCTCTTCATTTGCTTTCT+TGG | + | chr5_4:6014356-6014375 | None:intergenic | 35.0% | |
| !! | GGTGTTCCATATCATTTTTG+TGG | + | chr5_4:6014473-6014492 | None:intergenic | 35.0% |
| ATTTGTGATGTGCTGAATGA+AGG | - | chr5_4:6014616-6014635 | Msa0832850:intron | 35.0% | |
| !!! | CTCTCTTCTTGTGTTTTAGT+TGG | + | chr5_4:6014717-6014736 | None:intergenic | 35.0% |
| TAGCTTCTTCAGTCTTCATA+TGG | + | chr5_4:6014749-6014768 | None:intergenic | 35.0% | |
| TGAAGACTGAAGAAGCTAAT+AGG | - | chr5_4:6014751-6014770 | Msa0832850:intron | 35.0% | |
| TCTGATCAAAACAGGTTCAA+AGG | - | chr5_4:6014834-6014853 | Msa0832850:intron | 35.0% | |
| TTGTGGACAAATAAGTCACA+AGG | - | chr5_4:6014952-6014971 | Msa0832850:intron | 35.0% | |
| ! | ATTTCTGCTAGATTTGCTTG+AGG | + | chr5_4:6015027-6015046 | None:intergenic | 35.0% |
| TCAAGCAAATCTAGCAGAAA+TGG | - | chr5_4:6015026-6015045 | Msa0832850:CDS | 35.0% | |
| AGCAACAGCAAGCAAAATGA+TGG | + | chr5_4:6013503-6013522 | None:intergenic | 40.0% | |
| !!! | TCTATTGGGCCTGTTGTTTT+GGG | - | chr5_4:6013618-6013637 | Msa0832850:CDS | 40.0% |
| GTTTCCCCAATTCTTAACTG+TGG | + | chr5_4:6013763-6013782 | None:intergenic | 40.0% | |
| !! | TATCTTCTCAAGAGCATCGA+AGG | + | chr5_4:6013816-6013835 | None:intergenic | 40.0% |
| TCTGTGATTTCCAAAGCCTA+AGG | - | chr5_4:6013900-6013919 | Msa0832850:CDS | 40.0% | |
| ! | TTGGTTCGTTGTGTTAACCT+TGG | - | chr5_4:6013942-6013961 | Msa0832850:CDS | 40.0% |
| TGGTTCGTTGTGTTAACCTT+GGG | - | chr5_4:6013943-6013962 | Msa0832850:CDS | 40.0% | |
| !! | GGTTCCAATTTTGACAGATC+AGG | + | chr5_4:6014181-6014200 | None:intergenic | 40.0% |
| TCAAAATTGGAACCACTCGA+TGG | - | chr5_4:6014187-6014206 | Msa0832850:intron | 40.0% | |
| CTATAGTTAGTTCCATCGAG+TGG | + | chr5_4:6014202-6014221 | None:intergenic | 40.0% | |
| !! | TCTTCTTTTTCATCTGCAGG+AGG | + | chr5_4:6014292-6014311 | None:intergenic | 40.0% |
| AACACCCTGCTGAATAGTTA+TGG | - | chr5_4:6014487-6014506 | Msa0832850:intron | 40.0% | |
| AGTTATGGCGCTTATAATGC+TGG | - | chr5_4:6014502-6014521 | Msa0832850:intron | 40.0% | |
| ! | GCTTGATGACAAACCAATCA+TGG | - | chr5_4:6014567-6014586 | Msa0832850:intron | 40.0% |
| TCATGAATCTGCTCCATGAT+TGG | + | chr5_4:6014583-6014602 | None:intergenic | 40.0% | |
| GAAGATGTGCAAGATACTTC+AGG | - | chr5_4:6014642-6014661 | Msa0832850:intron | 40.0% | |
| ! | ACTTCAGGCTAATGTGCTTT+TGG | - | chr5_4:6014657-6014676 | Msa0832850:intron | 40.0% |
| GTACAGCAGAAGAAACAAAC+AGG | - | chr5_4:6014878-6014897 | Msa0832850:intron | 40.0% | |
| AAACCTTGTCGACAACAAAG+TGG | - | chr5_4:6015080-6015099 | Msa0832850:CDS | 40.0% | |
| AGCAACAGCAAGCAAAATGA+TGG | + | chr5_4:6013503-6013522 | None:intergenic | 40.0% | |
| !!! | TCTATTGGGCCTGTTGTTTT+GGG | - | chr5_4:6013618-6013637 | Msa0832850:CDS | 40.0% |
| GTTTCCCCAATTCTTAACTG+TGG | + | chr5_4:6013763-6013782 | None:intergenic | 40.0% | |
| !! | TATCTTCTCAAGAGCATCGA+AGG | + | chr5_4:6013816-6013835 | None:intergenic | 40.0% |
| TCTGTGATTTCCAAAGCCTA+AGG | - | chr5_4:6013900-6013919 | Msa0832850:CDS | 40.0% | |
| ! | TTGGTTCGTTGTGTTAACCT+TGG | - | chr5_4:6013942-6013961 | Msa0832850:CDS | 40.0% |
| TGGTTCGTTGTGTTAACCTT+GGG | - | chr5_4:6013943-6013962 | Msa0832850:CDS | 40.0% | |
| !! | GGTTCCAATTTTGACAGATC+AGG | + | chr5_4:6014181-6014200 | None:intergenic | 40.0% |
| TCAAAATTGGAACCACTCGA+TGG | - | chr5_4:6014187-6014206 | Msa0832850:intron | 40.0% | |
| CTATAGTTAGTTCCATCGAG+TGG | + | chr5_4:6014202-6014221 | None:intergenic | 40.0% | |
| !! | TCTTCTTTTTCATCTGCAGG+AGG | + | chr5_4:6014292-6014311 | None:intergenic | 40.0% |
| AACACCCTGCTGAATAGTTA+TGG | - | chr5_4:6014487-6014506 | Msa0832850:intron | 40.0% | |
| AGTTATGGCGCTTATAATGC+TGG | - | chr5_4:6014502-6014521 | Msa0832850:intron | 40.0% | |
| ! | GCTTGATGACAAACCAATCA+TGG | - | chr5_4:6014567-6014586 | Msa0832850:intron | 40.0% |
| TCATGAATCTGCTCCATGAT+TGG | + | chr5_4:6014583-6014602 | None:intergenic | 40.0% | |
| GAAGATGTGCAAGATACTTC+AGG | - | chr5_4:6014642-6014661 | Msa0832850:intron | 40.0% | |
| ! | ACTTCAGGCTAATGTGCTTT+TGG | - | chr5_4:6014657-6014676 | Msa0832850:intron | 40.0% |
| GTACAGCAGAAGAAACAAAC+AGG | - | chr5_4:6014878-6014897 | Msa0832850:intron | 40.0% | |
| AAACCTTGTCGACAACAAAG+TGG | - | chr5_4:6015080-6015099 | Msa0832850:CDS | 40.0% | |
| GTGCTTGTTCCTGTTACATC+TGG | - | chr5_4:6013363-6013382 | Msa0832850:intron | 45.0% | |
| AGTGGTAGACCAGATGTAAC+AGG | + | chr5_4:6013375-6013394 | None:intergenic | 45.0% | |
| GCATTACAGGTAAGAGCAAG+TGG | + | chr5_4:6013393-6013412 | None:intergenic | 45.0% | |
| ACGGATAGTGCAGCCAAAAA+CGG | + | chr5_4:6013423-6013442 | None:intergenic | 45.0% | |
| TTTGGCTGCACTATCCGTAT+TGG | - | chr5_4:6013425-6013444 | Msa0832850:CDS | 45.0% | |
| TGAGAGAGCTGCTACCAATA+CGG | + | chr5_4:6013442-6013461 | None:intergenic | 45.0% | |
| GACTCGATGTTAAGAGCAAG+TGG | + | chr5_4:6013474-6013493 | None:intergenic | 45.0% | |
| ACAGGCCCAATAGAGAAGAA+AGG | + | chr5_4:6013612-6013631 | None:intergenic | 45.0% | |
| !! | CTCTATTGGGCCTGTTGTTT+TGG | - | chr5_4:6013617-6013636 | Msa0832850:CDS | 45.0% |
| GGTTCGTTGTGTTAACCTTG+GGG | - | chr5_4:6013944-6013963 | Msa0832850:CDS | 45.0% | |
| TTTGCTTTCTTGGTCCCTGT+GGG | + | chr5_4:6014346-6014365 | None:intergenic | 45.0% | |
| ATTTGCTTTCTTGGTCCCTG+TGG | + | chr5_4:6014347-6014366 | None:intergenic | 45.0% | |
| AGCGCCATAACTATTCAGCA+GGG | + | chr5_4:6014494-6014513 | None:intergenic | 45.0% | |
| AAGCGCCATAACTATTCAGC+AGG | + | chr5_4:6014495-6014514 | None:intergenic | 45.0% | |
| ! | TGGAAAGAAGAAGTGTGTCG+TGG | - | chr5_4:6014522-6014541 | Msa0832850:intron | 45.0% |
| ! | GGAAAGAAGAAGTGTGTCGT+GGG | - | chr5_4:6014523-6014542 | Msa0832850:intron | 45.0% |
| ! | GAAAGAAGAAGTGTGTCGTG+GGG | - | chr5_4:6014524-6014543 | Msa0832850:intron | 45.0% |
| ! | CTTGAGGTGCAGAAGGATTT+TGG | + | chr5_4:6015011-6015030 | None:intergenic | 45.0% |
| ! | AGATTTGCTTGAGGTGCAGA+AGG | + | chr5_4:6015018-6015037 | None:intergenic | 45.0% |
| ! | AGTCCACTTTGTTGTCGACA+AGG | + | chr5_4:6015086-6015105 | None:intergenic | 45.0% |
| GTGCTTGTTCCTGTTACATC+TGG | - | chr5_4:6013363-6013382 | Msa0832850:intron | 45.0% | |
| AGTGGTAGACCAGATGTAAC+AGG | + | chr5_4:6013375-6013394 | None:intergenic | 45.0% | |
| GCATTACAGGTAAGAGCAAG+TGG | + | chr5_4:6013393-6013412 | None:intergenic | 45.0% | |
| ACGGATAGTGCAGCCAAAAA+CGG | + | chr5_4:6013423-6013442 | None:intergenic | 45.0% | |
| TTTGGCTGCACTATCCGTAT+TGG | - | chr5_4:6013425-6013444 | Msa0832850:CDS | 45.0% | |
| TGAGAGAGCTGCTACCAATA+CGG | + | chr5_4:6013442-6013461 | None:intergenic | 45.0% | |
| GACTCGATGTTAAGAGCAAG+TGG | + | chr5_4:6013474-6013493 | None:intergenic | 45.0% | |
| ACAGGCCCAATAGAGAAGAA+AGG | + | chr5_4:6013612-6013631 | None:intergenic | 45.0% | |
| !! | CTCTATTGGGCCTGTTGTTT+TGG | - | chr5_4:6013617-6013636 | Msa0832850:CDS | 45.0% |
| GGTTCGTTGTGTTAACCTTG+GGG | - | chr5_4:6013944-6013963 | Msa0832850:CDS | 45.0% | |
| TTTGCTTTCTTGGTCCCTGT+GGG | + | chr5_4:6014346-6014365 | None:intergenic | 45.0% | |
| ATTTGCTTTCTTGGTCCCTG+TGG | + | chr5_4:6014347-6014366 | None:intergenic | 45.0% | |
| AGCGCCATAACTATTCAGCA+GGG | + | chr5_4:6014494-6014513 | None:intergenic | 45.0% | |
| AAGCGCCATAACTATTCAGC+AGG | + | chr5_4:6014495-6014514 | None:intergenic | 45.0% | |
| ! | TGGAAAGAAGAAGTGTGTCG+TGG | - | chr5_4:6014522-6014541 | Msa0832850:intron | 45.0% |
| ! | GGAAAGAAGAAGTGTGTCGT+GGG | - | chr5_4:6014523-6014542 | Msa0832850:intron | 45.0% |
| ! | GAAAGAAGAAGTGTGTCGTG+GGG | - | chr5_4:6014524-6014543 | Msa0832850:intron | 45.0% |
| ! | CTTGAGGTGCAGAAGGATTT+TGG | + | chr5_4:6015011-6015030 | None:intergenic | 45.0% |
| ! | AGATTTGCTTGAGGTGCAGA+AGG | + | chr5_4:6015018-6015037 | None:intergenic | 45.0% |
| ! | AGTCCACTTTGTTGTCGACA+AGG | + | chr5_4:6015086-6015105 | None:intergenic | 45.0% |
| AAGCCCAAGCCCAAAACAAC+AGG | + | chr5_4:6013630-6013649 | None:intergenic | 50.0% | |
| TGATGAGAGGGCTGATCTGT+AGG | - | chr5_4:6013726-6013745 | Msa0832850:CDS | 50.0% | |
| GTTGTGTTAACCTTGGGGAG+CGG | - | chr5_4:6013949-6013968 | Msa0832850:CDS | 50.0% | |
| TTCTGGATTGCACGTCTAGC+CGG | - | chr5_4:6013979-6013998 | Msa0832850:CDS | 50.0% | |
| TCTAGCCGGATTTCGCTTTC+TGG | - | chr5_4:6013993-6014012 | Msa0832850:CDS | 50.0% | |
| CTAGCCGGATTTCGCTTTCT+GGG | - | chr5_4:6013994-6014013 | Msa0832850:CDS | 50.0% | |
| ACTGCCCAGAAAGCGAAATC+CGG | + | chr5_4:6014001-6014020 | None:intergenic | 50.0% | |
| CAGTGGTAACCACAGCACAA+CGG | - | chr5_4:6014017-6014036 | Msa0832850:CDS | 50.0% | |
| TCGAGAATTCCGTTGTGCTG+TGG | + | chr5_4:6014029-6014048 | None:intergenic | 50.0% | |
| CAACGCGTAATCCACCTCTA+AGG | + | chr5_4:6014260-6014279 | None:intergenic | 50.0% | |
| TTGCGATAGTCACTCCAGGA+GGG | + | chr5_4:6014694-6014713 | None:intergenic | 50.0% | |
| TTGGTTGCGATAGTCACTCC+AGG | + | chr5_4:6014698-6014717 | None:intergenic | 50.0% | |
| ACAAGGCATACCTTCTGCAC+AGG | - | chr5_4:6014969-6014988 | Msa0832850:intron | 50.0% | |
| CAAGGCATACCTTCTGCACA+GGG | - | chr5_4:6014970-6014989 | Msa0832850:intron | 50.0% | |
| ! | TTTTCTCGTCCCTGTGCAGA+AGG | + | chr5_4:6014982-6015001 | None:intergenic | 50.0% |
| AAGCCCAAGCCCAAAACAAC+AGG | + | chr5_4:6013630-6013649 | None:intergenic | 50.0% | |
| TGATGAGAGGGCTGATCTGT+AGG | - | chr5_4:6013726-6013745 | Msa0832850:CDS | 50.0% | |
| GTTGTGTTAACCTTGGGGAG+CGG | - | chr5_4:6013949-6013968 | Msa0832850:CDS | 50.0% | |
| TTCTGGATTGCACGTCTAGC+CGG | - | chr5_4:6013979-6013998 | Msa0832850:CDS | 50.0% | |
| TCTAGCCGGATTTCGCTTTC+TGG | - | chr5_4:6013993-6014012 | Msa0832850:CDS | 50.0% | |
| CTAGCCGGATTTCGCTTTCT+GGG | - | chr5_4:6013994-6014013 | Msa0832850:CDS | 50.0% | |
| ACTGCCCAGAAAGCGAAATC+CGG | + | chr5_4:6014001-6014020 | None:intergenic | 50.0% | |
| CAGTGGTAACCACAGCACAA+CGG | - | chr5_4:6014017-6014036 | Msa0832850:CDS | 50.0% | |
| TCGAGAATTCCGTTGTGCTG+TGG | + | chr5_4:6014029-6014048 | None:intergenic | 50.0% | |
| CAACGCGTAATCCACCTCTA+AGG | + | chr5_4:6014260-6014279 | None:intergenic | 50.0% | |
| TTGCGATAGTCACTCCAGGA+GGG | + | chr5_4:6014694-6014713 | None:intergenic | 50.0% | |
| TTGGTTGCGATAGTCACTCC+AGG | + | chr5_4:6014698-6014717 | None:intergenic | 50.0% | |
| ACAAGGCATACCTTCTGCAC+AGG | - | chr5_4:6014969-6014988 | Msa0832850:intron | 50.0% | |
| CAAGGCATACCTTCTGCACA+GGG | - | chr5_4:6014970-6014989 | Msa0832850:intron | 50.0% | |
| ! | TTTTCTCGTCCCTGTGCAGA+AGG | + | chr5_4:6014982-6015001 | None:intergenic | 50.0% |
| ! | TTGGTAGCAGCTCTCTCAGC+TGG | - | chr5_4:6013444-6013463 | Msa0832850:intron | 55.0% |
| !!! | TGGGCCTGTTGTTTTGGGCT+TGG | - | chr5_4:6013623-6013642 | Msa0832850:CDS | 55.0% |
| !!! | GGGCCTGTTGTTTTGGGCTT+GGG | - | chr5_4:6013624-6013643 | Msa0832850:CDS | 55.0% |
| CCAATGAACACGTGCACTCG+TGG | + | chr5_4:6013926-6013945 | None:intergenic | 55.0% | |
| CCACGAGTGCACGTGTTCAT+TGG | - | chr5_4:6013923-6013942 | Msa0832850:CDS | 55.0% | |
| TGTTAACCTTGGGGAGCGGT+CGG | - | chr5_4:6013953-6013972 | Msa0832850:CDS | 55.0% | |
| GGATTTCGCTTTCTGGGCAG+TGG | - | chr5_4:6014000-6014019 | Msa0832850:CDS | 55.0% | |
| ! | TGGGAAGAGGTGTGGCAACA+GGG | + | chr5_4:6014327-6014346 | None:intergenic | 55.0% |
| TTGCCACACCTCTTCCCACA+GGG | - | chr5_4:6014329-6014348 | Msa0832850:intron | 55.0% | |
| TTCTTGGTCCCTGTGGGAAG+AGG | + | chr5_4:6014340-6014359 | None:intergenic | 55.0% | |
| ! | AGAAGTGTGTCGTGGGGAAC+TGG | - | chr5_4:6014530-6014549 | Msa0832850:intron | 55.0% |
| TGGAGAAATTCCCACCCTCC+TGG | - | chr5_4:6014677-6014696 | Msa0832850:intron | 55.0% | |
| GATAGTCACTCCAGGAGGGT+GGG | + | chr5_4:6014690-6014709 | None:intergenic | 55.0% | |
| GTTGCGATAGTCACTCCAGG+AGG | + | chr5_4:6014695-6014714 | None:intergenic | 55.0% | |
| GATCGCTGCTGTAGTAGCAG+AGG | - | chr5_4:6015056-6015075 | Msa0832850:CDS | 55.0% | |
| ! | TTGGTAGCAGCTCTCTCAGC+TGG | - | chr5_4:6013444-6013463 | Msa0832850:intron | 55.0% |
| !!! | TGGGCCTGTTGTTTTGGGCT+TGG | - | chr5_4:6013623-6013642 | Msa0832850:CDS | 55.0% |
| !!! | GGGCCTGTTGTTTTGGGCTT+GGG | - | chr5_4:6013624-6013643 | Msa0832850:CDS | 55.0% |
| CCAATGAACACGTGCACTCG+TGG | + | chr5_4:6013926-6013945 | None:intergenic | 55.0% | |
| CCACGAGTGCACGTGTTCAT+TGG | - | chr5_4:6013923-6013942 | Msa0832850:CDS | 55.0% | |
| TGTTAACCTTGGGGAGCGGT+CGG | - | chr5_4:6013953-6013972 | Msa0832850:CDS | 55.0% | |
| GGATTTCGCTTTCTGGGCAG+TGG | - | chr5_4:6014000-6014019 | Msa0832850:CDS | 55.0% | |
| ! | TGGGAAGAGGTGTGGCAACA+GGG | + | chr5_4:6014327-6014346 | None:intergenic | 55.0% |
| TTGCCACACCTCTTCCCACA+GGG | - | chr5_4:6014329-6014348 | Msa0832850:intron | 55.0% | |
| TTCTTGGTCCCTGTGGGAAG+AGG | + | chr5_4:6014340-6014359 | None:intergenic | 55.0% | |
| ! | AGAAGTGTGTCGTGGGGAAC+TGG | - | chr5_4:6014530-6014549 | Msa0832850:intron | 55.0% |
| TGGAGAAATTCCCACCCTCC+TGG | - | chr5_4:6014677-6014696 | Msa0832850:intron | 55.0% | |
| GATAGTCACTCCAGGAGGGT+GGG | + | chr5_4:6014690-6014709 | None:intergenic | 55.0% | |
| GTTGCGATAGTCACTCCAGG+AGG | + | chr5_4:6014695-6014714 | None:intergenic | 55.0% | |
| GATCGCTGCTGTAGTAGCAG+AGG | - | chr5_4:6015056-6015075 | Msa0832850:CDS | 55.0% | |
| ! | GCACTCGTGGCCTTAGGCTT+TGG | + | chr5_4:6013913-6013932 | None:intergenic | 60.0% |
| ACACGTGCACTCGTGGCCTT+AGG | + | chr5_4:6013919-6013938 | None:intergenic | 60.0% | |
| ! | GGGAAGAGGTGTGGCAACAG+GGG | + | chr5_4:6014326-6014345 | None:intergenic | 60.0% |
| ! | GTGGGAAGAGGTGTGGCAAC+AGG | + | chr5_4:6014328-6014347 | None:intergenic | 60.0% |
| GTTGCCACACCTCTTCCCAC+AGG | - | chr5_4:6014328-6014347 | Msa0832850:intron | 60.0% | |
| CGATAGTCACTCCAGGAGGG+TGG | + | chr5_4:6014691-6014710 | None:intergenic | 60.0% | |
| ! | GCACTCGTGGCCTTAGGCTT+TGG | + | chr5_4:6013913-6013932 | None:intergenic | 60.0% |
| ACACGTGCACTCGTGGCCTT+AGG | + | chr5_4:6013919-6013938 | None:intergenic | 60.0% | |
| ! | GGGAAGAGGTGTGGCAACAG+GGG | + | chr5_4:6014326-6014345 | None:intergenic | 60.0% |
| ! | GTGGGAAGAGGTGTGGCAAC+AGG | + | chr5_4:6014328-6014347 | None:intergenic | 60.0% |
| GTTGCCACACCTCTTCCCAC+AGG | - | chr5_4:6014328-6014347 | Msa0832850:intron | 60.0% | |
| CGATAGTCACTCCAGGAGGG+TGG | + | chr5_4:6014691-6014710 | None:intergenic | 60.0% | |
| GAAATGCCGACCGCTCCCCA+AGG | + | chr5_4:6013962-6013981 | None:intergenic | 65.0% | |
| TGGGGAGCGGTCGGCATTTC+TGG | - | chr5_4:6013962-6013981 | Msa0832850:CDS | 65.0% | |
| GGTCCCTGTGGGAAGAGGTG+TGG | + | chr5_4:6014335-6014354 | None:intergenic | 65.0% | |
| GAAATGCCGACCGCTCCCCA+AGG | + | chr5_4:6013962-6013981 | None:intergenic | 65.0% | |
| TGGGGAGCGGTCGGCATTTC+TGG | - | chr5_4:6013962-6013981 | Msa0832850:CDS | 65.0% | |
| GGTCCCTGTGGGAAGAGGTG+TGG | + | chr5_4:6014335-6014354 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 6013203 | 6015107 | 6013203 | ID=Msa0832850;Name=Msa0832850 |
| chr5_4 | mRNA | 6013203 | 6015107 | 6013203 | ID=Msa0832850-mRNA-1;Parent=Msa0832850;Name=Msa0832850-mRNA-1;_AED=0.86;_eAED=0.87;_QI=0|0|0|0.5|0.66|0.75|4|0|259 |
| chr5_4 | exon | 6014981 | 6015107 | 6014981 | ID=Msa0832850-mRNA-1:exon:2581;Parent=Msa0832850-mRNA-1 |
| chr5_4 | exon | 6013570 | 6014053 | 6013570 | ID=Msa0832850-mRNA-1:exon:2580;Parent=Msa0832850-mRNA-1 |
| chr5_4 | exon | 6013411 | 6013462 | 6013411 | ID=Msa0832850-mRNA-1:exon:2579;Parent=Msa0832850-mRNA-1 |
| chr5_4 | exon | 6013203 | 6013319 | 6013203 | ID=Msa0832850-mRNA-1:exon:2578;Parent=Msa0832850-mRNA-1 |
| chr5_4 | CDS | 6014981 | 6015107 | 6014981 | ID=Msa0832850-mRNA-1:cds;Parent=Msa0832850-mRNA-1 |
| chr5_4 | CDS | 6013570 | 6014053 | 6013570 | ID=Msa0832850-mRNA-1:cds;Parent=Msa0832850-mRNA-1 |
| chr5_4 | CDS | 6013411 | 6013462 | 6013411 | ID=Msa0832850-mRNA-1:cds;Parent=Msa0832850-mRNA-1 |
| chr5_4 | CDS | 6013203 | 6013319 | 6013203 | ID=Msa0832850-mRNA-1:cds;Parent=Msa0832850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
