Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0796170 | XP_003611299.1 | 99.510 | 204 | 1 | 0 | 1 | 204 | 1 | 204 | 4.43e-149 | 422 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0796170 | sp|O23714|PSB2A_ARATH | 89.394 | 198 | 21 | 0 | 1 | 198 | 1 | 198 | 6.99e-133 | 374 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0796170 | B7FH05 | 99.510 | 204 | 1 | 0 | 1 | 204 | 1 | 204 | 2.11e-149 | 422 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0742380 | Msa0796170 | 0.820571 | 6.393140e-53 | -8.615850e-47 |
| Msa0796170 | Msa1192000 | 0.804630 | 1.969996e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0796170 | MtrunA17_Chr5g0399161 | 99.510 | 204 | 1 | 0 | 1 | 204 | 1 | 204 | 4.07e-153 | 422 |
| Msa0796170 | MtrunA17_Chr5g0394931 | 96.500 | 200 | 7 | 0 | 1 | 200 | 1 | 200 | 1.73e-146 | 405 |
| Msa0796170 | MtrunA17_Chr2g0304161 | 88.136 | 59 | 5 | 1 | 141 | 199 | 1 | 57 | 7.61e-32 | 110 |
| Msa0796170 | MtrunA17_Chr1g0210811 | 28.249 | 177 | 114 | 4 | 10 | 178 | 42 | 213 | 7.34e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0796170 | AT3G22630.1 | 89.394 | 198 | 21 | 0 | 1 | 198 | 1 | 198 | 7.11e-134 | 374 |
| Msa0796170 | AT4G14800.1 | 87.374 | 198 | 25 | 0 | 1 | 198 | 1 | 198 | 3.41e-130 | 364 |
| Msa0796170 | AT4G14800.2 | 80.841 | 214 | 25 | 1 | 1 | 198 | 1 | 214 | 9.23e-126 | 353 |
Find 61 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTTCACTCAATCGGTTTC+TGG | 0.038319 | 5_3:-8216175 | None:intergenic |
| GAAACCATGGAATGCGTATT+TGG | 0.216378 | 5_3:+8216213 | Msa0796170:exon |
| CTTTGTATCAATTCCGTAAT+GGG | 0.276520 | 5_3:+8216488 | Msa0796170:CDS |
| CTTTCACTCAATCGGTTTCT+GGG | 0.300410 | 5_3:-8216174 | None:intergenic |
| AAGCTTGAAAAGGGAGCTTT+TGG | 0.328358 | 5_3:+8217976 | Msa0796170:CDS |
| ACCGTATTCCATATCTTGAT+TGG | 0.346422 | 5_3:+8218223 | Msa0796170:three_prime_UTR |
| TTTCTTCTCTTTCACTCAAT+CGG | 0.363434 | 5_3:-8216182 | None:intergenic |
| TCTGTGAACATCCTTCTTGC+TGG | 0.377484 | 5_3:+8217895 | Msa0796170:CDS |
| CTGATGTTGTTTGTTTATGC+TGG | 0.409289 | 5_3:-8216123 | None:intergenic |
| AAAGAAGTCCAATCAAGATA+TGG | 0.414037 | 5_3:-8218231 | None:intergenic |
| GCTTTGTATCAATTCCGTAA+TGG | 0.426748 | 5_3:+8216487 | Msa0796170:CDS |
| AACACTTCACAAGCTTGAAA+AGG | 0.430702 | 5_3:+8217966 | Msa0796170:CDS |
| AGAAGGATGTTCACAGAGTA+GGG | 0.434546 | 5_3:-8217889 | None:intergenic |
| TCAAAACCACCAAGAGAAAG+AGG | 0.443830 | 5_3:-8218292 | None:intergenic |
| CTAGCGGTGAACCCGGTGAC+AGG | 0.462278 | 5_3:+8216355 | Msa0796170:CDS |
| AAGAAGGATGTTCACAGAGT+AGG | 0.469415 | 5_3:-8217890 | None:intergenic |
| TCCAATCAAGATATGGAATA+CGG | 0.477437 | 5_3:-8218224 | None:intergenic |
| TTAATTCAAGCTGAAGGAAC+AGG | 0.478420 | 5_3:-8218201 | None:intergenic |
| GAATGCGTATTTGGATTAGT+AGG | 0.482356 | 5_3:+8216222 | Msa0796170:CDS |
| CTAATTATGTGGTAATCTTG+TGG | 0.482785 | 5_3:+8218518 | Msa0796170:three_prime_UTR |
| TAGTGAGAGGGATCCCATTA+CGG | 0.491022 | 5_3:-8216501 | None:intergenic |
| ACACTTCACAAGCTTGAAAA+GGG | 0.512694 | 5_3:+8217967 | Msa0796170:CDS |
| TGTCATTGTTTCTAATTATG+TGG | 0.519784 | 5_3:+8218507 | Msa0796170:three_prime_UTR |
| AATCAGATCAAGGTTGGTTG+TGG | 0.521276 | 5_3:+8218098 | Msa0796170:CDS |
| TGCAGAAATCAGATCAAGGT+TGG | 0.523715 | 5_3:+8218092 | Msa0796170:CDS |
| TAGTCAATATAGTATAGTGA+TGG | 0.533828 | 5_3:-8217937 | None:intergenic |
| ATCAAAATTGTTGACAAGGA+TGG | 0.541090 | 5_3:+8218138 | Msa0796170:CDS |
| ACTCGCTACTGCGCTCCGCA+AGG | 0.542105 | 5_3:+8216555 | Msa0796170:CDS |
| CTTTCGTTCTCAACACGACA+AGG | 0.542621 | 5_3:+8216088 | Msa0796170:five_prime_UTR |
| GCTGGTTATGACAAAGAGAC+AGG | 0.546617 | 5_3:+8217913 | Msa0796170:CDS |
| TAATCCAAATACGCATTCCA+TGG | 0.558419 | 5_3:-8216217 | None:intergenic |
| GAGAGAATGAAACCTGTCAC+CGG | 0.562718 | 5_3:-8216367 | None:intergenic |
| TGTTATCAAAATTGTTGACA+AGG | 0.566229 | 5_3:+8218134 | Msa0796170:CDS |
| CACAAACTCGTTGCTGCTAG+CGG | 0.569004 | 5_3:+8216339 | Msa0796170:CDS |
| CTTTGTCATAACCAGCAAGA+AGG | 0.572175 | 5_3:-8217906 | None:intergenic |
| AGAAAGAAAGAAAGAAACCA+TGG | 0.580581 | 5_3:+8216200 | Msa0796170:exon |
| CAAAACCACCAAGAGAAAGA+GGG | 0.581678 | 5_3:-8218291 | None:intergenic |
| CAGCAGCAGCAGTAGTGAGA+GGG | 0.586152 | 5_3:-8216513 | None:intergenic |
| GCAGCAGCAGCAGTAGTGAG+AGG | 0.587393 | 5_3:-8216514 | None:intergenic |
| CTTGTCGTGTTGAGAACGAA+AGG | 0.589626 | 5_3:-8216087 | None:intergenic |
| GCTGATTAGTGCTTGAGGAA+AGG | 0.595416 | 5_3:+8218452 | Msa0796170:three_prime_UTR |
| AGTCAATATAGTATAGTGAT+GGG | 0.602500 | 5_3:-8217936 | None:intergenic |
| ATAGTGTTTAATATACCTCA+AGG | 0.604638 | 5_3:+8218425 | Msa0796170:three_prime_UTR |
| GCATTGCAGAAATCAGATCA+AGG | 0.606697 | 5_3:+8218088 | Msa0796170:CDS |
| ATACGGTTAATTCAAGCTGA+AGG | 0.609793 | 5_3:-8218207 | None:intergenic |
| CACTAATCAGCACTGCCTTG+AGG | 0.612615 | 5_3:-8218440 | None:intergenic |
| GTTGCTGCTAGCGGTGAACC+CGG | 0.614126 | 5_3:+8216348 | Msa0796170:CDS |
| TTGTCGTGTTGAGAACGAAA+GGG | 0.623662 | 5_3:-8216086 | None:intergenic |
| CTACCACAGTGGAATGTCTG+TGG | 0.631323 | 5_3:+8218038 | Msa0796170:CDS |
| TGCATGGCGTCAATCAGTGA+AGG | 0.631931 | 5_3:+8218173 | Msa0796170:CDS |
| ATGGTGCAAGAGAGTATGCA+TGG | 0.636054 | 5_3:+8218157 | Msa0796170:CDS |
| CTTCATTTGATTTGTGTACG+AGG | 0.644073 | 5_3:-8216293 | None:intergenic |
| AGAGAATGAAACCTGTCACC+GGG | 0.644260 | 5_3:-8216366 | None:intergenic |
| GCTGCTGCTAATTTCACTCG+TGG | 0.646433 | 5_3:+8216529 | Msa0796170:CDS |
| AAAACCACCAAGAGAAAGAG+GGG | 0.653791 | 5_3:-8218290 | None:intergenic |
| TTTCGTTCTCAACACGACAA+GGG | 0.668698 | 5_3:+8216089 | Msa0796170:five_prime_UTR |
| AGATGTATCAGCTACTACGA+TGG | 0.672169 | 5_3:-8216256 | None:intergenic |
| GCAGTGCTGATTAGTGCTTG+AGG | 0.680548 | 5_3:+8218447 | Msa0796170:three_prime_UTR |
| CAACGAGTTTGTGAGAATCG+AGG | 0.687571 | 5_3:-8216329 | None:intergenic |
| ATGGACAGACACTACCACAG+TGG | 0.770189 | 5_3:+8218027 | Msa0796170:CDS |
| CTTCCACAGACATTCCACTG+TGG | 0.786939 | 5_3:-8218041 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATGCTAAAGTTTAATATT+TGG | + | chr5_3:8216672-8216691 | Msa0796170:intron | 15.0% |
| !!! | ACTTATTTAAGATTTTCTAT+TGG | + | chr5_3:8216722-8216741 | Msa0796170:intron | 15.0% |
| !!! | ATTCATTGATTTTCACTTTT+AGG | + | chr5_3:8216431-8216450 | Msa0796170:intron | 20.0% |
| !!! | TTCATTGATTTTCACTTTTA+GGG | + | chr5_3:8216432-8216451 | Msa0796170:intron | 20.0% |
| !! | AAGTATAGCACTAATTATTA+GGG | - | chr5_3:8216605-8216624 | None:intergenic | 20.0% |
| !! | AAAGTATAGCACTAATTATT+AGG | - | chr5_3:8216606-8216625 | None:intergenic | 20.0% |
| !!! | TAATATTTGGATTTAGTTCA+TGG | + | chr5_3:8216685-8216704 | Msa0796170:intron | 20.0% |
| !! | TTATAGCATATACATACAAA+TGG | + | chr5_3:8216860-8216879 | Msa0796170:intron | 20.0% |
| !!! | TTAAATTTTGTGAGACTATT+TGG | + | chr5_3:8217305-8217324 | Msa0796170:intron | 20.0% |
| !!! | ACAATTTTGATAACAAAGTT+TGG | - | chr5_3:8218129-8218148 | None:intergenic | 20.0% |
| ! | AACTCAAAATCAAAACTTGA+AGG | - | chr5_3:8216403-8216422 | None:intergenic | 25.0% |
| ! | ATTATTAGGGTTTGGAAAAA+GGG | - | chr5_3:8216592-8216611 | None:intergenic | 25.0% |
| ! | AATTATTAGGGTTTGGAAAA+AGG | - | chr5_3:8216593-8216612 | None:intergenic | 25.0% |
| ! | TTAATACTTGCAAGACTATT+TGG | + | chr5_3:8216747-8216766 | Msa0796170:intron | 25.0% |
| ! | TAATACTTGCAAGACTATTT+GGG | + | chr5_3:8216748-8216767 | Msa0796170:intron | 25.0% |
| !! | AATAGAAGTAAGTTGAAAAC+AGG | - | chr5_3:8216813-8216832 | None:intergenic | 25.0% |
| !! | GTAGTTTTCATAAACTATTC+TGG | - | chr5_3:8216840-8216859 | None:intergenic | 25.0% |
| !! | TTTTAACAGTCTGATATTGT+CGG | - | chr5_3:8216890-8216909 | None:intergenic | 25.0% |
| !! | TATAGTTGCAATTTGGAATT+GGG | + | chr5_3:8216932-8216951 | Msa0796170:intron | 25.0% |
| ! | TGATATAACATAGCAGATAT+TGG | - | chr5_3:8217192-8217211 | None:intergenic | 25.0% |
| !! | TTTATGGTGTACTTTTCTTT+AGG | + | chr5_3:8217569-8217588 | Msa0796170:intron | 25.0% |
| ! | AAACAAAGCTTATGTCAATT+GGG | + | chr5_3:8217727-8217746 | Msa0796170:intron | 25.0% |
| ! | AGTCAATATAGTATAGTGAT+GGG | - | chr5_3:8217939-8217958 | None:intergenic | 25.0% |
| ! | TAGTCAATATAGTATAGTGA+TGG | - | chr5_3:8217940-8217959 | None:intergenic | 25.0% |
| !!! | CATCATTGATAGTGAAAAAT+AGG | - | chr5_3:8218010-8218029 | None:intergenic | 25.0% |
| !!! | CTATTTTTCACTATCAATGA+TGG | + | chr5_3:8218008-8218027 | Msa0796170:CDS | 25.0% |
| !!! | ATTTTGATAACAAAGTTTGG+AGG | - | chr5_3:8218126-8218145 | None:intergenic | 25.0% |
| ! | TGTTATCAAAATTGTTGACA+AGG | + | chr5_3:8218134-8218153 | Msa0796170:CDS | 25.0% |
| !! | GAAAATCTTTTGTCTCTAAA+TGG | + | chr5_3:8218324-8218343 | Msa0796170:three_prime_UTR | 25.0% |
| ! | ATAGTGTTTAATATACCTCA+AGG | + | chr5_3:8218425-8218444 | Msa0796170:three_prime_UTR | 25.0% |
| !!! | TGTCATTGTTTCTAATTATG+TGG | + | chr5_3:8218507-8218526 | Msa0796170:three_prime_UTR | 25.0% |
| TTTCTTCTCTTTCACTCAAT+CGG | - | chr5_3:8216185-8216204 | None:intergenic | 30.0% | |
| AGAAAGAAAGAAAGAAACCA+TGG | + | chr5_3:8216200-8216219 | Msa0796170:exon | 30.0% | |
| CTTTGTATCAATTCCGTAAT+GGG | + | chr5_3:8216488-8216507 | Msa0796170:CDS | 30.0% | |
| TTATTAGGGTTTGGAAAAAG+GGG | - | chr5_3:8216591-8216610 | None:intergenic | 30.0% | |
| TAGCACTAATTATTAGGGTT+TGG | - | chr5_3:8216600-8216619 | None:intergenic | 30.0% | |
| ! | ATTTAGTTCATGGACTTGTT+TGG | + | chr5_3:8216695-8216714 | Msa0796170:intron | 30.0% |
| !! | AGTAAGTTGAAAACAGGTTT+TGG | - | chr5_3:8216807-8216826 | None:intergenic | 30.0% |
| ATTCCAAATTGCAACTATAC+TGG | - | chr5_3:8216931-8216950 | None:intergenic | 30.0% | |
| ! | GTATAGTTGCAATTTGGAAT+TGG | + | chr5_3:8216931-8216950 | Msa0796170:intron | 30.0% |
| ! | AGATTTGAAATTTGCATCGT+CGG | + | chr5_3:8217058-8217077 | Msa0796170:intron | 30.0% |
| !! | TAAGCTTTGTTTGGATAAAC+AGG | - | chr5_3:8217719-8217738 | None:intergenic | 30.0% |
| !! | CAATTGACATAAGCTTTGTT+TGG | - | chr5_3:8217728-8217747 | None:intergenic | 30.0% |
| CAAACAAAGCTTATGTCAAT+TGG | + | chr5_3:8217726-8217745 | Msa0796170:intron | 30.0% | |
| TTGCATTGTGATTATCGATA+AGG | + | chr5_3:8217825-8217844 | Msa0796170:intron | 30.0% | |
| ATCAAAATTGTTGACAAGGA+TGG | + | chr5_3:8218138-8218157 | Msa0796170:CDS | 30.0% | |
| TCCAATCAAGATATGGAATA+CGG | - | chr5_3:8218227-8218246 | None:intergenic | 30.0% | |
| AAAGAAGTCCAATCAAGATA+TGG | - | chr5_3:8218234-8218253 | None:intergenic | 30.0% | |
| ! | CTGATGTTGTTTGTTTATGC+TGG | - | chr5_3:8216126-8216145 | None:intergenic | 35.0% |
| TAATCCAAATACGCATTCCA+TGG | - | chr5_3:8216220-8216239 | None:intergenic | 35.0% | |
| !! | GAATGCGTATTTGGATTAGT+AGG | + | chr5_3:8216222-8216241 | Msa0796170:CDS | 35.0% |
| !! | CTTCATTTGATTTGTGTACG+AGG | - | chr5_3:8216296-8216315 | None:intergenic | 35.0% |
| GCTTTGTATCAATTCCGTAA+TGG | + | chr5_3:8216487-8216506 | Msa0796170:CDS | 35.0% | |
| TTTACTCCTAAGTGCTTTCA+TGG | + | chr5_3:8216642-8216661 | Msa0796170:intron | 35.0% | |
| TTACTCCTAAGTGCTTTCAT+GGG | + | chr5_3:8216643-8216662 | Msa0796170:intron | 35.0% | |
| !!! | AGGTTTTGGACATCATAAGT+TGG | - | chr5_3:8216793-8216812 | None:intergenic | 35.0% |
| CATTCACTCATTTAGCCATA+TGG | - | chr5_3:8217101-8217120 | None:intergenic | 35.0% | |
| TATGGCTAAATGAGTGAATG+TGG | + | chr5_3:8217101-8217120 | Msa0796170:intron | 35.0% | |
| ATGGCTAAATGAGTGAATGT+GGG | + | chr5_3:8217102-8217121 | Msa0796170:intron | 35.0% | |
| AGTGTATTGCAGAACAATAG+TGG | + | chr5_3:8217161-8217180 | Msa0796170:intron | 35.0% | |
| ! | TAAGCGCTTATGCTTTTGTT+TGG | + | chr5_3:8217250-8217269 | Msa0796170:intron | 35.0% |
| !! | GCTTATGCTTTTGTTTGGAT+CGG | + | chr5_3:8217255-8217274 | Msa0796170:intron | 35.0% |
| !! | TTTTGTTTGGATCGGCTTAT+TGG | + | chr5_3:8217263-8217282 | Msa0796170:intron | 35.0% |
| ! | TTTGTTTGGATCGGCTTATT+GGG | + | chr5_3:8217264-8217283 | Msa0796170:intron | 35.0% |
| CTTATCATGATAAGCGCTTA+CGG | - | chr5_3:8217475-8217494 | None:intergenic | 35.0% | |
| ATGATAAGCTGTTGTGCTTT+AGG | + | chr5_3:8217487-8217506 | Msa0796170:intron | 35.0% | |
| ACAGAGGTAATTGAACACTT+GGG | - | chr5_3:8217542-8217561 | None:intergenic | 35.0% | |
| TACAGAGGTAATTGAACACT+TGG | - | chr5_3:8217543-8217562 | None:intergenic | 35.0% | |
| GTGTTCAATTACCTCTGTAT+TGG | + | chr5_3:8217544-8217563 | Msa0796170:intron | 35.0% | |
| ! | TACCTCTGTATTGGTGTTTA+TGG | + | chr5_3:8217553-8217572 | Msa0796170:intron | 35.0% |
| ! | AACACCGAAAGTACATCAAA+AGG | - | chr5_3:8217615-8217634 | None:intergenic | 35.0% |
| ATTCAGCTACTGATATGCTT+AGG | + | chr5_3:8217773-8217792 | Msa0796170:intron | 35.0% | |
| CGTGTATTTATACGTGAACT+TGG | + | chr5_3:8217852-8217871 | Msa0796170:intron | 35.0% | |
| AACACTTCACAAGCTTGAAA+AGG | + | chr5_3:8217966-8217985 | Msa0796170:CDS | 35.0% | |
| ACACTTCACAAGCTTGAAAA+GGG | + | chr5_3:8217967-8217986 | Msa0796170:CDS | 35.0% | |
| TTAATTCAAGCTGAAGGAAC+AGG | - | chr5_3:8218204-8218223 | None:intergenic | 35.0% | |
| ATACGGTTAATTCAAGCTGA+AGG | - | chr5_3:8218210-8218229 | None:intergenic | 35.0% | |
| ACCGTATTCCATATCTTGAT+TGG | + | chr5_3:8218223-8218242 | Msa0796170:three_prime_UTR | 35.0% | |
| !!! | ATTTTTTCCCCTCTTTCTCT+TGG | + | chr5_3:8218283-8218302 | Msa0796170:three_prime_UTR | 35.0% |
| AGGAAAGGTCTACTGAAAAA+AGG | + | chr5_3:8218467-8218486 | Msa0796170:three_prime_UTR | 35.0% | |
| TTGTCGTGTTGAGAACGAAA+GGG | - | chr5_3:8216089-8216108 | None:intergenic | 40.0% | |
| TTTCGTTCTCAACACGACAA+GGG | + | chr5_3:8216089-8216108 | Msa0796170:five_prime_UTR | 40.0% | |
| ! | CTTTCACTCAATCGGTTTCT+GGG | - | chr5_3:8216177-8216196 | None:intergenic | 40.0% |
| ! | TCTTTCACTCAATCGGTTTC+TGG | - | chr5_3:8216178-8216197 | None:intergenic | 40.0% |
| GAAACCATGGAATGCGTATT+TGG | + | chr5_3:8216213-8216232 | Msa0796170:exon | 40.0% | |
| AGATGTATCAGCTACTACGA+TGG | - | chr5_3:8216259-8216278 | None:intergenic | 40.0% | |
| GGTTTGGAAAAAGGGGTAAA+TGG | - | chr5_3:8216584-8216603 | None:intergenic | 40.0% | |
| !! | ATCAACCCATGAAAGCACTT+AGG | - | chr5_3:8216651-8216670 | None:intergenic | 40.0% |
| TAGGTCGAGATTAGACAGTA+TGG | + | chr5_3:8216996-8217015 | Msa0796170:intron | 40.0% | |
| TTGTTAAGTAGCAGCTACAG+CGG | - | chr5_3:8217215-8217234 | None:intergenic | 40.0% | |
| ! | TTGTTTGGATCGGCTTATTG+GGG | + | chr5_3:8217265-8217284 | Msa0796170:intron | 40.0% |
| CAGAGGTAATTGAACACTTG+GGG | - | chr5_3:8217541-8217560 | None:intergenic | 40.0% | |
| CACCATAAACACCAATACAG+AGG | - | chr5_3:8217558-8217577 | None:intergenic | 40.0% | |
| TTAGGTGTTCCGCCTATATA+CGG | + | chr5_3:8217587-8217606 | Msa0796170:intron | 40.0% | |
| !! | CATCAAAAGGTGCCGTATAT+AGG | - | chr5_3:8217602-8217621 | None:intergenic | 40.0% |
| ! | GGCACCTTTTGATGTACTTT+CGG | + | chr5_3:8217608-8217627 | Msa0796170:intron | 40.0% |
| AGAAGGATGTTCACAGAGTA+GGG | - | chr5_3:8217892-8217911 | None:intergenic | 40.0% | |
| AAGAAGGATGTTCACAGAGT+AGG | - | chr5_3:8217893-8217912 | None:intergenic | 40.0% | |
| CTTTGTCATAACCAGCAAGA+AGG | - | chr5_3:8217909-8217928 | None:intergenic | 40.0% | |
| ! | AAGCTTGAAAAGGGAGCTTT+TGG | + | chr5_3:8217976-8217995 | Msa0796170:CDS | 40.0% |
| !! | GAAAAGGGAGCTTTTGGTTA+CGG | + | chr5_3:8217982-8218001 | Msa0796170:CDS | 40.0% |
| GCATTGCAGAAATCAGATCA+AGG | + | chr5_3:8218088-8218107 | Msa0796170:CDS | 40.0% | |
| TGCAGAAATCAGATCAAGGT+TGG | + | chr5_3:8218092-8218111 | Msa0796170:CDS | 40.0% | |
| ! | AATCAGATCAAGGTTGGTTG+TGG | + | chr5_3:8218098-8218117 | Msa0796170:CDS | 40.0% |
| AAAACCACCAAGAGAAAGAG+GGG | - | chr5_3:8218293-8218312 | None:intergenic | 40.0% | |
| CAAAACCACCAAGAGAAAGA+GGG | - | chr5_3:8218294-8218313 | None:intergenic | 40.0% | |
| TCAAAACCACCAAGAGAAAG+AGG | - | chr5_3:8218295-8218314 | None:intergenic | 40.0% | |
| CTTGTCGTGTTGAGAACGAA+AGG | - | chr5_3:8216090-8216109 | None:intergenic | 45.0% | |
| CTTTCGTTCTCAACACGACA+AGG | + | chr5_3:8216088-8216107 | Msa0796170:five_prime_UTR | 45.0% | |
| CAACGAGTTTGTGAGAATCG+AGG | - | chr5_3:8216332-8216351 | None:intergenic | 45.0% | |
| AGAGAATGAAACCTGTCACC+GGG | - | chr5_3:8216369-8216388 | None:intergenic | 45.0% | |
| GAGAGAATGAAACCTGTCAC+CGG | - | chr5_3:8216370-8216389 | None:intergenic | 45.0% | |
| TAGTGAGAGGGATCCCATTA+CGG | - | chr5_3:8216504-8216523 | None:intergenic | 45.0% | |
| AGGGGTAAATGGATACCTTG+CGG | - | chr5_3:8216573-8216592 | None:intergenic | 45.0% | |
| GCGCCAGTATAGTTGCAATT+TGG | + | chr5_3:8216925-8216944 | Msa0796170:intron | 45.0% | |
| ATCAGCAAGTTCCCACATTC+AGG | + | chr5_3:8216965-8216984 | Msa0796170:intron | 45.0% | |
| TCAGCAAGTTCCCACATTCA+GGG | + | chr5_3:8216966-8216985 | Msa0796170:intron | 45.0% | |
| CTAACAGTCACCCTGAATGT+GGG | - | chr5_3:8216979-8216998 | None:intergenic | 45.0% | |
| TCAATCCAACGGTCACCATA+TGG | + | chr5_3:8217083-8217102 | Msa0796170:intron | 45.0% | |
| TTTAGCCATATGGTGACCGT+TGG | - | chr5_3:8217091-8217110 | None:intergenic | 45.0% | |
| TTGAACACTTGGGGTCTGTT+TGG | - | chr5_3:8217532-8217551 | None:intergenic | 45.0% | |
| !! | CAAAAGGTGCCGTATATAGG+CGG | - | chr5_3:8217599-8217618 | None:intergenic | 45.0% |
| TCTGTGAACATCCTTCTTGC+TGG | + | chr5_3:8217895-8217914 | Msa0796170:CDS | 45.0% | |
| GCTGGTTATGACAAAGAGAC+AGG | + | chr5_3:8217913-8217932 | Msa0796170:CDS | 45.0% | |
| ! | ATGGTGCAAGAGAGTATGCA+TGG | + | chr5_3:8218157-8218176 | Msa0796170:CDS | 45.0% |
| ! | TTTTCCCCTCTTTCTCTTGG+TGG | + | chr5_3:8218286-8218305 | Msa0796170:three_prime_UTR | 45.0% |
| GCTGATTAGTGCTTGAGGAA+AGG | + | chr5_3:8218452-8218471 | Msa0796170:three_prime_UTR | 45.0% | |
| CACAAACTCGTTGCTGCTAG+CGG | + | chr5_3:8216339-8216358 | Msa0796170:CDS | 50.0% | |
| GCTGCTGCTAATTTCACTCG+TGG | + | chr5_3:8216529-8216548 | Msa0796170:CDS | 50.0% | |
| ATACTGGCGCTGTAGCATAG+CGG | - | chr5_3:8216915-8216934 | None:intergenic | 50.0% | |
| CCTAACAGTCACCCTGAATG+TGG | - | chr5_3:8216980-8216999 | None:intergenic | 50.0% | |
| CCACATTCAGGGTGACTGTT+AGG | + | chr5_3:8216977-8216996 | Msa0796170:intron | 50.0% | |
| CATCGTCGGACTCAATCCAA+CGG | + | chr5_3:8217072-8217091 | Msa0796170:intron | 50.0% | |
| ATGGACAGACACTACCACAG+TGG | + | chr5_3:8218027-8218046 | Msa0796170:CDS | 50.0% | |
| CTACCACAGTGGAATGTCTG+TGG | + | chr5_3:8218038-8218057 | Msa0796170:CDS | 50.0% | |
| CTTCCACAGACATTCCACTG+TGG | - | chr5_3:8218044-8218063 | None:intergenic | 50.0% | |
| TGCATGGCGTCAATCAGTGA+AGG | + | chr5_3:8218173-8218192 | Msa0796170:CDS | 50.0% | |
| CACTAATCAGCACTGCCTTG+AGG | - | chr5_3:8218443-8218462 | None:intergenic | 50.0% | |
| !! | GCAGTGCTGATTAGTGCTTG+AGG | + | chr5_3:8218447-8218466 | Msa0796170:three_prime_UTR | 50.0% |
| CAGCAGCAGCAGTAGTGAGA+GGG | - | chr5_3:8216516-8216535 | None:intergenic | 55.0% | |
| CGCACGAGACGAACAGAGAT+CGG | - | chr5_3:8217639-8217658 | None:intergenic | 55.0% | |
| CGATCTCTGTTCGTCTCGTG+CGG | + | chr5_3:8217637-8217656 | Msa0796170:intron | 55.0% | |
| GTTCGTCTCGTGCGGAGATT+TGG | + | chr5_3:8217645-8217664 | Msa0796170:intron | 55.0% | |
| GTTGCTGCTAGCGGTGAACC+CGG | + | chr5_3:8216348-8216367 | Msa0796170:CDS | 60.0% | |
| GCAGCAGCAGCAGTAGTGAG+AGG | - | chr5_3:8216517-8216536 | None:intergenic | 60.0% | |
| CTAGCGGTGAACCCGGTGAC+AGG | + | chr5_3:8216355-8216374 | Msa0796170:CDS | 65.0% | |
| ACTCGCTACTGCGCTCCGCA+AGG | + | chr5_3:8216555-8216574 | Msa0796170:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 8216055 | 8218540 | 8216055 | ID=Msa0796170;Name=Msa0796170 |
| chr5_3 | mRNA | 8216055 | 8218540 | 8216055 | ID=Msa0796170-mRNA-1;Parent=Msa0796170;Name=Msa0796170-mRNA-1;_AED=0.00;_eAED=0.00;_QI=164|1|1|1|1|1|3|322|204 |
| chr5_3 | exon | 8216055 | 8216376 | 8216055 | ID=Msa0796170-mRNA-1:exon:3369;Parent=Msa0796170-mRNA-1 |
| chr5_3 | exon | 8216453 | 8216576 | 8216453 | ID=Msa0796170-mRNA-1:exon:3370;Parent=Msa0796170-mRNA-1 |
| chr5_3 | exon | 8217886 | 8218540 | 8217886 | ID=Msa0796170-mRNA-1:exon:3371;Parent=Msa0796170-mRNA-1 |
| chr5_3 | five_prime_UTR | 8216055 | 8216218 | 8216055 | ID=Msa0796170-mRNA-1:five_prime_utr;Parent=Msa0796170-mRNA-1 |
| chr5_3 | CDS | 8216219 | 8216376 | 8216219 | ID=Msa0796170-mRNA-1:cds;Parent=Msa0796170-mRNA-1 |
| chr5_3 | CDS | 8216453 | 8216576 | 8216453 | ID=Msa0796170-mRNA-1:cds;Parent=Msa0796170-mRNA-1 |
| chr5_3 | CDS | 8217886 | 8218218 | 8217886 | ID=Msa0796170-mRNA-1:cds;Parent=Msa0796170-mRNA-1 |
| chr5_3 | three_prime_UTR | 8218219 | 8218540 | 8218219 | ID=Msa0796170-mRNA-1:three_prime_utr;Parent=Msa0796170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
