AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0796860

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0796860 MtrunA17_Chr5g0399751 94.805 231 12 0 1 231 1 231 1.68e-155 431
Msa0796860 MtrunA17_Chr6g0484011 78.947 95 20 0 86 180 2 96 5.51e-47 151
Msa0796860 MtrunA17_Chr4g0055621 61.600 125 40 2 78 199 41 160 2.68e-34 121
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0796860 AT5G47120.1 70.213 235 67 1 1 232 1 235 1.74e-111 321
Msa0796860 AT4G17580.1 47.934 242 111 2 14 242 8 247 2.13e-73 224
Msa0796860 AT5G47130.2 45.455 231 114 3 17 242 2 225 1.57e-66 206
Msa0796860 AT5G47130.1 45.070 213 105 3 35 242 2 207 2.15e-58 184
Msa0796860 AT5G47130.3 45.550 191 92 3 57 242 3 186 1.97e-52 168

Find 82 sgRNAs with CRISPR-Local

Find 359 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGGTGGCTTGGTTTCTTC+TGG 0.110151 5_3:+8869397 Msa0796860:CDS
TCGCAACTGCCTTGGCTTTC+GGG 0.124016 5_3:+8869326 Msa0796860:CDS
CACTTTGCTTCTGCCATCTT+TGG 0.129193 5_3:+8869442 Msa0796860:CDS
GTCGCAACTGCCTTGGCTTT+CGG 0.172277 5_3:+8869325 Msa0796860:CDS
GGTAAAACTGGATACTATTA+TGG 0.189983 5_3:+8870153 Msa0796860:three_prime_UTR
GACTCTTCTCCTGTAATCTT+TGG 0.201689 5_3:+8869942 Msa0796860:three_prime_UTR
GATGGCCGCGGCAATGTTTC+AGG 0.202705 5_3:+8868730 Msa0796860:CDS
CCTGACCTTGTTTACTGATT+TGG 0.272374 5_3:+8869695 Msa0796860:CDS
CTTGGCTTTCGGGTGTTTCT+CGG 0.282337 5_3:+8869336 Msa0796860:CDS
TAGAAGGAATTCTTGTAGTT+TGG 0.291082 5_3:+8870195 Msa0796860:three_prime_UTR
TAATATAAATATATAAAGTT+TGG 0.293550 5_3:+8867916 Msa0796860:five_prime_UTR
ATGTTTCAGGGTGCTTCTAT+TGG 0.319086 5_3:+8868743 Msa0796860:CDS
TATTGGACCCTTGATTAATT+CGG 0.322576 5_3:+8868760 Msa0796860:CDS
TGCCATCTTTGGAGGTTCAA+TGG 0.338989 5_3:+8869453 Msa0796860:CDS
TACTATCATCCAAAGATTAC+AGG 0.350839 5_3:-8869951 None:intergenic
TTGGTGGCTTGGTTTCTTCT+GGG 0.360140 5_3:+8869398 Msa0796860:CDS
GTACCTCTACCTTGGTGGCT+TGG 0.360734 5_3:+8869387 Msa0796860:CDS
GTGTTTCTCGGGAGCAGCTT+TGG 0.393747 5_3:+8869348 Msa0796860:CDS
AAAGAGGTTGACTTTGTTGA+TGG 0.398644 5_3:+8868712 Msa0796860:CDS
TTGGCTTTCGGGTGTTTCTC+GGG 0.400338 5_3:+8869337 Msa0796860:CDS
AAGAGTCAAACAAGTTTGAT+TGG 0.408233 5_3:-8869926 None:intergenic
TTTGCTTCTGCCATCTTTGG+AGG 0.415758 5_3:+8869445 Msa0796860:CDS
AATGGCTCTCGTTAAGTTTG+AGG 0.419587 5_3:+8869471 Msa0796860:CDS
TTCATTTGTCGCAACTGCCT+TGG 0.420717 5_3:+8869318 Msa0796860:CDS
CCAAATCAGTAAACAAGGTC+AGG 0.425444 5_3:-8869695 None:intergenic
CTGGGTTGTCCATTCTTATG+TGG 0.437083 5_3:+8869416 Msa0796860:CDS
GCTGTGGTGGCTGCTTCTGT+TGG 0.440092 5_3:+8868479 Msa0796860:CDS
TTCAGACAAGAGGGCGGAGG+AGG 0.445802 5_3:+8869866 Msa0796860:CDS
TTTGAAAGAGACGGGTAGAT+AGG 0.456009 5_3:-8867873 None:intergenic
GTAAAACTGGATACTATTAT+GGG 0.456825 5_3:+8870154 Msa0796860:three_prime_UTR
CAGCTTTGGTTGCTAAGCGC+AGG 0.458313 5_3:+8869362 Msa0796860:CDS
CGTTCAGAATCATCTCAAAC+AGG 0.459060 5_3:+8868087 Msa0796860:CDS
ATGGCCGCGGCAATGTTTCA+GGG 0.465472 5_3:+8868731 Msa0796860:CDS
GAAATCCATACCTCTTCAAA+AGG 0.471008 5_3:-8868590 None:intergenic
ATTTAATATTTGAAAGAGAC+GGG 0.471847 5_3:-8867881 None:intergenic
TTGAATAGCCGAATTAATCA+AGG 0.480018 5_3:-8868768 None:intergenic
CGTGTGTGGGAATTAGTGTT+TGG 0.486280 5_3:+8868552 Msa0796860:CDS
CTCCATGTCCTTCTCAACAT+TGG 0.493334 5_3:+8868509 Msa0796860:CDS
CATGTCCTTCTCAACATTGG+TGG 0.511225 5_3:+8868512 Msa0796860:CDS
TCTTACCACAATTGCGTGTG+TGG 0.522216 5_3:+8868538 Msa0796860:CDS
GTTGACTTTGTTGATGGCCG+CGG 0.524903 5_3:+8868718 Msa0796860:CDS
GACCTTGTGTTTCGCTGTGG+TGG 0.526552 5_3:+8868466 Msa0796860:CDS
TTTATGGTATGCAGCGAAAG+AGG 0.532864 5_3:+8868696 Msa0796860:intron
AGCCATTGAACCTCCAAAGA+TGG 0.536659 5_3:-8869455 None:intergenic
TATTTAATATTTGAAAGAGA+CGG 0.543689 5_3:-8867882 None:intergenic
CGAGAAACACCCGAAAGCCA+AGG 0.557128 5_3:-8869335 None:intergenic
CACACAAGAAATAGTTGAGA+AGG 0.562976 5_3:+8869638 Msa0796860:CDS
AGCTTTGGTTGCTAAGCGCA+GGG 0.566850 5_3:+8869363 Msa0796860:CDS
AAACCAAGCCACCAAGGTAG+AGG 0.568434 5_3:-8869390 None:intergenic
TTACAATGATGAGTAGAATC+CGG 0.571426 5_3:-8869731 None:intergenic
GAATTCCTTCTAATTCATGA+AGG 0.572011 5_3:-8870184 None:intergenic
AGGGAGTACCTCTACCTTGG+TGG 0.572036 5_3:+8869382 Msa0796860:CDS
AACATGACTAACTGCACAGT+GGG 0.575870 5_3:-8870024 None:intergenic
ATAGTTGAGAAGGCACACTT+TGG 0.576217 5_3:+8869648 Msa0796860:CDS
AGCCACCACAGCGAAACACA+AGG 0.576748 5_3:-8868468 None:intergenic
TCTTCGATTCAACACCTCGA+TGG 0.580588 5_3:+8868023 Msa0796860:CDS
CGGCTATTCAAGTCGATCCA+AGG 0.582719 5_3:+8868780 Msa0796860:CDS
GAATACCACCAATGTTGAGA+AGG 0.591899 5_3:-8868517 None:intergenic
AAAGTGCAACCACATAAGAA+TGG 0.591952 5_3:-8869425 None:intergenic
ATCCATACCTCTTCAAAAGG+AGG 0.597690 5_3:-8868587 None:intergenic
AATTCCCACACACGCAATTG+TGG 0.599033 5_3:-8868543 None:intergenic
CTTACCACAATTGCGTGTGT+GGG 0.603529 5_3:+8868539 Msa0796860:CDS
TGCAACCAAATCAGTAAACA+AGG 0.603621 5_3:-8869700 None:intergenic
GTTGAATAATTCAGACAAGA+GGG 0.610812 5_3:+8869857 Msa0796860:intron
AGTTGAATAATTCAGACAAG+AGG 0.616446 5_3:+8869856 Msa0796860:intron
CAGAAGAAACCAAGCCACCA+AGG 0.620970 5_3:-8869396 None:intergenic
TAATTCAGACAAGAGGGCGG+AGG 0.621526 5_3:+8869863 Msa0796860:CDS
GTTTGAGATGATTCTGAACG+CGG 0.622509 5_3:-8868084 None:intergenic
TTTGAGATGATTCTGAACGC+GGG 0.635009 5_3:-8868083 None:intergenic
CACCAATGTTGAGAAGGACA+TGG 0.637929 5_3:-8868511 None:intergenic
CAAATCAGTAAACAAGGTCA+GGG 0.638032 5_3:-8869694 None:intergenic
TTGAGATGATTCTGAACGCG+GGG 0.639066 5_3:-8868082 None:intergenic
TGAATAGCCGAATTAATCAA+GGG 0.652441 5_3:-8868767 None:intergenic
TAAAACTGGATACTATTATG+GGG 0.653682 5_3:+8870155 Msa0796860:three_prime_UTR
GTGGGAACAAGTTCAAGACA+TGG 0.661999 5_3:-8870006 None:intergenic
AGCACCCTGAAACATTGCCG+CGG 0.662260 5_3:-8868735 None:intergenic
TTTGACCTTGTGTTTCGCTG+TGG 0.664849 5_3:+8868463 Msa0796860:CDS
CAATGTTGAGAAGGACATGG+AGG 0.708038 5_3:-8868508 None:intergenic
AGGAAAGGAACACAACTGCG+TGG 0.722879 5_3:-8870273 None:intergenic
GAATAATTCAGACAAGAGGG+CGG 0.723996 5_3:+8869860 Msa0796860:CDS
AGAGTATTGAAATTCCATCG+AGG 0.736875 5_3:-8868037 None:intergenic
AAACATGACTAACTGCACAG+TGG 0.752592 5_3:-8870025 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTATAATATAATTTTAGTTT+TGG + chr5_3:8869249-8869268 Msa0796860:intron 10.0%
!!! GTATAATATAATTTTAGTTT+TGG + chr5_3:8869249-8869268 Msa0796860:intron 10.0%
!! TATTTAATATTTGAAAGAGA+CGG - chr5_3:8867885-8867904 None:intergenic 15.0%
!!! TTAAACTAGTTTTGATTATT+AGG + chr5_3:8868316-8868335 Msa0796860:intron 15.0%
!!! TAAACTAGTTTTGATTATTA+GGG + chr5_3:8868317-8868336 Msa0796860:intron 15.0%
!! AATTAAGTTAATGAAATCAT+TGG + chr5_3:8868351-8868370 Msa0796860:intron 15.0%
!!! AAGAATTAGCAATATTTTTA+GGG - chr5_3:8869152-8869171 None:intergenic 15.0%
!!! AAAGAATTAGCAATATTTTT+AGG - chr5_3:8869153-8869172 None:intergenic 15.0%
!!! TTTGTTTTTATAATGCTATA+AGG + chr5_3:8869539-8869558 Msa0796860:intron 15.0%
!!! TTTTAGTTTTCTAATAAAAG+AGG + chr5_3:8870076-8870095 Msa0796860:three_prime_UTR 15.0%
!!! TACCATTATTTTTTAAGATA+GGG + chr5_3:8870107-8870126 Msa0796860:three_prime_UTR 15.0%
!!! ACACAAGATTTTTTATAAAT+GGG + chr5_3:8870132-8870151 Msa0796860:three_prime_UTR 15.0%
!!! TTAGAACTTTTTTATTGAAT+TGG + chr5_3:8870249-8870268 Msa0796860:three_prime_UTR 15.0%
!! TATTTAATATTTGAAAGAGA+CGG - chr5_3:8867885-8867904 None:intergenic 15.0%
!!! TTAAACTAGTTTTGATTATT+AGG + chr5_3:8868316-8868335 Msa0796860:intron 15.0%
!!! TAAACTAGTTTTGATTATTA+GGG + chr5_3:8868317-8868336 Msa0796860:intron 15.0%
!! AATTAAGTTAATGAAATCAT+TGG + chr5_3:8868351-8868370 Msa0796860:intron 15.0%
!!! AAGAATTAGCAATATTTTTA+GGG - chr5_3:8869152-8869171 None:intergenic 15.0%
!!! AAAGAATTAGCAATATTTTT+AGG - chr5_3:8869153-8869172 None:intergenic 15.0%
!!! TTTGTTTTTATAATGCTATA+AGG + chr5_3:8869539-8869558 Msa0796860:intron 15.0%
!!! TTTTAGTTTTCTAATAAAAG+AGG + chr5_3:8870076-8870095 Msa0796860:three_prime_UTR 15.0%
!!! TACCATTATTTTTTAAGATA+GGG + chr5_3:8870107-8870126 Msa0796860:three_prime_UTR 15.0%
!!! ACACAAGATTTTTTATAAAT+GGG + chr5_3:8870132-8870151 Msa0796860:three_prime_UTR 15.0%
!!! TTAGAACTTTTTTATTGAAT+TGG + chr5_3:8870249-8870268 Msa0796860:three_prime_UTR 15.0%
!! ATTTAATATTTGAAAGAGAC+GGG - chr5_3:8867884-8867903 None:intergenic 20.0%
!! AACAAACAAAAAAAAAGCTA+TGG + chr5_3:8867985-8868004 Msa0796860:exon 20.0%
!! TTCAATCATTTCAAATTTCT+AGG + chr5_3:8868138-8868157 Msa0796860:intron 20.0%
!! TCAATCATTTCAAATTTCTA+GGG + chr5_3:8868139-8868158 Msa0796860:intron 20.0%
!!! TTTATGACAGGAATAATTTT+TGG + chr5_3:8868248-8868267 Msa0796860:intron 20.0%
!!! AATGAAATCATTGGATTTTT+AGG + chr5_3:8868360-8868379 Msa0796860:intron 20.0%
!!! ATTGGATTTTTAGGAATAAT+GGG + chr5_3:8868369-8868388 Msa0796860:intron 20.0%
!! TGTGTTGAATTAATAATTGT+AGG + chr5_3:8868436-8868455 Msa0796860:intron 20.0%
!! TAAAAAGAATGAAACAAACA+GGG - chr5_3:8868680-8868699 None:intergenic 20.0%
!! ATAAAAAGAATGAAACAAAC+AGG - chr5_3:8868681-8868700 None:intergenic 20.0%
!!! TGTTTGTTTCATTCTTTTTA+TGG + chr5_3:8868680-8868699 Msa0796860:intron 20.0%
!! TATATATGCTACATGAATAT+AGG - chr5_3:8868902-8868921 None:intergenic 20.0%
!!! GCTAATTCTTTTTTCATTTT+TGG + chr5_3:8869162-8869181 Msa0796860:intron 20.0%
!!! TTTCATTTTTGGTTATCAAA+AGG + chr5_3:8869173-8869192 Msa0796860:intron 20.0%
!!! GTACCATTATTTTTTAAGAT+AGG + chr5_3:8870106-8870125 Msa0796860:three_prime_UTR 20.0%
!! CATTTATAAAAAATCTTGTG+TGG - chr5_3:8870133-8870152 None:intergenic 20.0%
!!! CACACAAGATTTTTTATAAA+TGG + chr5_3:8870131-8870150 Msa0796860:three_prime_UTR 20.0%
!!! TTTTTATAAATGGGTAAAAC+TGG + chr5_3:8870141-8870160 Msa0796860:three_prime_UTR 20.0%
!! ATTTAATATTTGAAAGAGAC+GGG - chr5_3:8867884-8867903 None:intergenic 20.0%
!! AACAAACAAAAAAAAAGCTA+TGG + chr5_3:8867985-8868004 Msa0796860:exon 20.0%
!! TTCAATCATTTCAAATTTCT+AGG + chr5_3:8868138-8868157 Msa0796860:intron 20.0%
!! TCAATCATTTCAAATTTCTA+GGG + chr5_3:8868139-8868158 Msa0796860:intron 20.0%
!!! TTTATGACAGGAATAATTTT+TGG + chr5_3:8868248-8868267 Msa0796860:intron 20.0%
!!! AATGAAATCATTGGATTTTT+AGG + chr5_3:8868360-8868379 Msa0796860:intron 20.0%
!!! ATTGGATTTTTAGGAATAAT+GGG + chr5_3:8868369-8868388 Msa0796860:intron 20.0%
!! TGTGTTGAATTAATAATTGT+AGG + chr5_3:8868436-8868455 Msa0796860:intron 20.0%
!! TAAAAAGAATGAAACAAACA+GGG - chr5_3:8868680-8868699 None:intergenic 20.0%
!! ATAAAAAGAATGAAACAAAC+AGG - chr5_3:8868681-8868700 None:intergenic 20.0%
!!! TGTTTGTTTCATTCTTTTTA+TGG + chr5_3:8868680-8868699 Msa0796860:intron 20.0%
!! TATATATGCTACATGAATAT+AGG - chr5_3:8868902-8868921 None:intergenic 20.0%
!!! GCTAATTCTTTTTTCATTTT+TGG + chr5_3:8869162-8869181 Msa0796860:intron 20.0%
!!! TTTCATTTTTGGTTATCAAA+AGG + chr5_3:8869173-8869192 Msa0796860:intron 20.0%
!!! GTACCATTATTTTTTAAGAT+AGG + chr5_3:8870106-8870125 Msa0796860:three_prime_UTR 20.0%
!! CATTTATAAAAAATCTTGTG+TGG - chr5_3:8870133-8870152 None:intergenic 20.0%
!!! CACACAAGATTTTTTATAAA+TGG + chr5_3:8870131-8870150 Msa0796860:three_prime_UTR 20.0%
!!! TTTTTATAAATGGGTAAAAC+TGG + chr5_3:8870141-8870160 Msa0796860:three_prime_UTR 20.0%
! ATTCAATTCTCTTAATTCGT+CGG + chr5_3:8868189-8868208 Msa0796860:intron 25.0%
!!! CATTGGATTTTTAGGAATAA+TGG + chr5_3:8868368-8868387 Msa0796860:intron 25.0%
!! AATATAATGAAAGCATACCT+TGG - chr5_3:8868800-8868819 None:intergenic 25.0%
! GTATGCTTTCATTATATTTG+TGG + chr5_3:8868802-8868821 Msa0796860:intron 25.0%
!!! TTTGTCAAAGTTTGATAATG+TGG + chr5_3:8868854-8868873 Msa0796860:intron 25.0%
!!! CTAAATTGCTAATTGTTTTG+TGG + chr5_3:8868940-8868959 Msa0796860:intron 25.0%
! TTATACCTTATCTTCATCAA+AGG + chr5_3:8869207-8869226 Msa0796860:intron 25.0%
! TATACCTTATCTTCATCAAA+GGG + chr5_3:8869208-8869227 Msa0796860:intron 25.0%
! TAATGCTATAAGGTTGTTTA+CGG + chr5_3:8869549-8869568 Msa0796860:intron 25.0%
!! TACTTTTGCAGTTGTATTTT+GGG + chr5_3:8869583-8869602 Msa0796860:intron 25.0%
! AACTGAAAGAGAAATCTAAA+AGG - chr5_3:8869774-8869793 None:intergenic 25.0%
! GTCAATACAATAGTTATAAG+AGG - chr5_3:8869818-8869837 None:intergenic 25.0%
!! CTTATAACTATTGTATTGAC+TGG + chr5_3:8869818-8869837 Msa0796860:intron 25.0%
! GTAAAACTGGATACTATTAT+GGG + chr5_3:8870154-8870173 Msa0796860:three_prime_UTR 25.0%
! TAAAACTGGATACTATTATG+GGG + chr5_3:8870155-8870174 Msa0796860:three_prime_UTR 25.0%
!! TTTTTCCTTCATGAATTAGA+AGG + chr5_3:8870179-8870198 Msa0796860:three_prime_UTR 25.0%
! ATTCAATTCTCTTAATTCGT+CGG + chr5_3:8868189-8868208 Msa0796860:intron 25.0%
!!! CATTGGATTTTTAGGAATAA+TGG + chr5_3:8868368-8868387 Msa0796860:intron 25.0%
!! AATATAATGAAAGCATACCT+TGG - chr5_3:8868800-8868819 None:intergenic 25.0%
! GTATGCTTTCATTATATTTG+TGG + chr5_3:8868802-8868821 Msa0796860:intron 25.0%
!!! TTTGTCAAAGTTTGATAATG+TGG + chr5_3:8868854-8868873 Msa0796860:intron 25.0%
!!! CTAAATTGCTAATTGTTTTG+TGG + chr5_3:8868940-8868959 Msa0796860:intron 25.0%
! TTATACCTTATCTTCATCAA+AGG + chr5_3:8869207-8869226 Msa0796860:intron 25.0%
! TATACCTTATCTTCATCAAA+GGG + chr5_3:8869208-8869227 Msa0796860:intron 25.0%
! TAATGCTATAAGGTTGTTTA+CGG + chr5_3:8869549-8869568 Msa0796860:intron 25.0%
!! TACTTTTGCAGTTGTATTTT+GGG + chr5_3:8869583-8869602 Msa0796860:intron 25.0%
! AACTGAAAGAGAAATCTAAA+AGG - chr5_3:8869774-8869793 None:intergenic 25.0%
! GTCAATACAATAGTTATAAG+AGG - chr5_3:8869818-8869837 None:intergenic 25.0%
!! CTTATAACTATTGTATTGAC+TGG + chr5_3:8869818-8869837 Msa0796860:intron 25.0%
! GTAAAACTGGATACTATTAT+GGG + chr5_3:8870154-8870173 Msa0796860:three_prime_UTR 25.0%
! TAAAACTGGATACTATTATG+GGG + chr5_3:8870155-8870174 Msa0796860:three_prime_UTR 25.0%
!! TTTTTCCTTCATGAATTAGA+AGG + chr5_3:8870179-8870198 Msa0796860:three_prime_UTR 25.0%
! GAATTGCTGATTGATGAAAA+TGG - chr5_3:8868173-8868192 None:intergenic 30.0%
ACCAGAGTTAAATTTATGAC+AGG + chr5_3:8868236-8868255 Msa0796860:intron 30.0%
TCCTGTCATAAATTTAACTC+TGG - chr5_3:8868240-8868259 None:intergenic 30.0%
AAGAACCAAAAGCTACAAAA+AGG - chr5_3:8868620-8868639 None:intergenic 30.0%
TATTGGACCCTTGATTAATT+CGG + chr5_3:8868760-8868779 Msa0796860:CDS 30.0%
TGAATAGCCGAATTAATCAA+GGG - chr5_3:8868770-8868789 None:intergenic 30.0%
TTGAATAGCCGAATTAATCA+AGG - chr5_3:8868771-8868790 None:intergenic 30.0%
! TCATTATATTTGTGGTTTGC+TGG + chr5_3:8868810-8868829 Msa0796860:intron 30.0%
! TCCACTAGAATGTTCTATTT+TGG + chr5_3:8869032-8869051 Msa0796860:intron 30.0%
ACCAAAATAGAACATTCTAG+TGG - chr5_3:8869036-8869055 None:intergenic 30.0%
AAGGAAAACTAAAAACCAAG+GGG - chr5_3:8869100-8869119 None:intergenic 30.0%
CAAGGAAAACTAAAAACCAA+GGG - chr5_3:8869101-8869120 None:intergenic 30.0%
ACAAGGAAAACTAAAAACCA+AGG - chr5_3:8869102-8869121 None:intergenic 30.0%
!!! GTTTTTAGTTTTCCTTGTGT+TGG + chr5_3:8869104-8869123 Msa0796860:intron 30.0%
ATACCTTATCTTCATCAAAG+GGG + chr5_3:8869209-8869228 Msa0796860:intron 30.0%
CAAAATACAACTGCAAAAGT+AGG - chr5_3:8869584-8869603 None:intergenic 30.0%
!! CTACTTTTGCAGTTGTATTT+TGG + chr5_3:8869582-8869601 Msa0796860:intron 30.0%
! ATTTGGTTGCAATTTTTGTC+CGG + chr5_3:8869712-8869731 Msa0796860:CDS 30.0%
TTACAATGATGAGTAGAATC+CGG - chr5_3:8869734-8869753 None:intergenic 30.0%
GAAAGAGAAATCTAAAAGGA+TGG - chr5_3:8869770-8869789 None:intergenic 30.0%
AGTTGAATAATTCAGACAAG+AGG + chr5_3:8869856-8869875 Msa0796860:intron 30.0%
GTTGAATAATTCAGACAAGA+GGG + chr5_3:8869857-8869876 Msa0796860:intron 30.0%
AAGAGTCAAACAAGTTTGAT+TGG - chr5_3:8869929-8869948 None:intergenic 30.0%
TACTATCATCCAAAGATTAC+AGG - chr5_3:8869954-8869973 None:intergenic 30.0%
GGCCCTATCTTAAAAAATAA+TGG - chr5_3:8870112-8870131 None:intergenic 30.0%
GGTAAAACTGGATACTATTA+TGG + chr5_3:8870153-8870172 Msa0796860:three_prime_UTR 30.0%
GAATTCCTTCTAATTCATGA+AGG - chr5_3:8870187-8870206 None:intergenic 30.0%
TAGAAGGAATTCTTGTAGTT+TGG + chr5_3:8870195-8870214 Msa0796860:three_prime_UTR 30.0%
! GAATTGCTGATTGATGAAAA+TGG - chr5_3:8868173-8868192 None:intergenic 30.0%
ACCAGAGTTAAATTTATGAC+AGG + chr5_3:8868236-8868255 Msa0796860:intron 30.0%
TCCTGTCATAAATTTAACTC+TGG - chr5_3:8868240-8868259 None:intergenic 30.0%
AAGAACCAAAAGCTACAAAA+AGG - chr5_3:8868620-8868639 None:intergenic 30.0%
TATTGGACCCTTGATTAATT+CGG + chr5_3:8868760-8868779 Msa0796860:CDS 30.0%
TGAATAGCCGAATTAATCAA+GGG - chr5_3:8868770-8868789 None:intergenic 30.0%
TTGAATAGCCGAATTAATCA+AGG - chr5_3:8868771-8868790 None:intergenic 30.0%
! TCATTATATTTGTGGTTTGC+TGG + chr5_3:8868810-8868829 Msa0796860:intron 30.0%
! TCCACTAGAATGTTCTATTT+TGG + chr5_3:8869032-8869051 Msa0796860:intron 30.0%
ACCAAAATAGAACATTCTAG+TGG - chr5_3:8869036-8869055 None:intergenic 30.0%
AAGGAAAACTAAAAACCAAG+GGG - chr5_3:8869100-8869119 None:intergenic 30.0%
CAAGGAAAACTAAAAACCAA+GGG - chr5_3:8869101-8869120 None:intergenic 30.0%
ACAAGGAAAACTAAAAACCA+AGG - chr5_3:8869102-8869121 None:intergenic 30.0%
!!! GTTTTTAGTTTTCCTTGTGT+TGG + chr5_3:8869104-8869123 Msa0796860:intron 30.0%
ATACCTTATCTTCATCAAAG+GGG + chr5_3:8869209-8869228 Msa0796860:intron 30.0%
CAAAATACAACTGCAAAAGT+AGG - chr5_3:8869584-8869603 None:intergenic 30.0%
!! CTACTTTTGCAGTTGTATTT+TGG + chr5_3:8869582-8869601 Msa0796860:intron 30.0%
! ATTTGGTTGCAATTTTTGTC+CGG + chr5_3:8869712-8869731 Msa0796860:CDS 30.0%
TTACAATGATGAGTAGAATC+CGG - chr5_3:8869734-8869753 None:intergenic 30.0%
GAAAGAGAAATCTAAAAGGA+TGG - chr5_3:8869770-8869789 None:intergenic 30.0%
AGTTGAATAATTCAGACAAG+AGG + chr5_3:8869856-8869875 Msa0796860:intron 30.0%
GTTGAATAATTCAGACAAGA+GGG + chr5_3:8869857-8869876 Msa0796860:intron 30.0%
AAGAGTCAAACAAGTTTGAT+TGG - chr5_3:8869929-8869948 None:intergenic 30.0%
TACTATCATCCAAAGATTAC+AGG - chr5_3:8869954-8869973 None:intergenic 30.0%
GGCCCTATCTTAAAAAATAA+TGG - chr5_3:8870112-8870131 None:intergenic 30.0%
GGTAAAACTGGATACTATTA+TGG + chr5_3:8870153-8870172 Msa0796860:three_prime_UTR 30.0%
GAATTCCTTCTAATTCATGA+AGG - chr5_3:8870187-8870206 None:intergenic 30.0%
TAGAAGGAATTCTTGTAGTT+TGG + chr5_3:8870195-8870214 Msa0796860:three_prime_UTR 30.0%
!! AGAGTATTGAAATTCCATCG+AGG - chr5_3:8868040-8868059 None:intergenic 35.0%
!!! TCTTAATTCGTCGGTTTTCT+AGG + chr5_3:8868198-8868217 Msa0796860:intron 35.0%
!!! CTTAATTCGTCGGTTTTCTA+GGG + chr5_3:8868199-8868218 Msa0796860:intron 35.0%
GAAATCCATACCTCTTCAAA+AGG - chr5_3:8868593-8868612 None:intergenic 35.0%
! CTGTTCCTTTTTGTAGCTTT+TGG + chr5_3:8868612-8868631 Msa0796860:intron 35.0%
!!! GTAGCTTTTGGTTCTTTTCA+TGG + chr5_3:8868624-8868643 Msa0796860:intron 35.0%
! AAAGAGGTTGACTTTGTTGA+TGG + chr5_3:8868712-8868731 Msa0796860:CDS 35.0%
AGGAAAACTAAAAACCAAGG+GGG - chr5_3:8869099-8869118 None:intergenic 35.0%
!!! TTTTAGGGTGTGAAAAGAGA+GGG - chr5_3:8869137-8869156 None:intergenic 35.0%
!!! TTTTTAGGGTGTGAAAAGAG+AGG - chr5_3:8869138-8869157 None:intergenic 35.0%
TACCTTATCTTCATCAAAGG+GGG + chr5_3:8869210-8869229 Msa0796860:intron 35.0%
AAATGAACTGAAGATGATGC+TGG - chr5_3:8869305-8869324 None:intergenic 35.0%
AAAGTGCAACCACATAAGAA+TGG - chr5_3:8869428-8869447 None:intergenic 35.0%
!! TTCCTGAGTTCTTACTTTTG+TGG + chr5_3:8869502-8869521 Msa0796860:intron 35.0%
TTCCACAAAAGTAAGAACTC+AGG - chr5_3:8869507-8869526 None:intergenic 35.0%
CACACAAGAAATAGTTGAGA+AGG + chr5_3:8869638-8869657 Msa0796860:CDS 35.0%
CAAATCAGTAAACAAGGTCA+GGG - chr5_3:8869697-8869716 None:intergenic 35.0%
TGCAACCAAATCAGTAAACA+AGG - chr5_3:8869703-8869722 None:intergenic 35.0%
!! AGAGTATTGAAATTCCATCG+AGG - chr5_3:8868040-8868059 None:intergenic 35.0%
!!! TCTTAATTCGTCGGTTTTCT+AGG + chr5_3:8868198-8868217 Msa0796860:intron 35.0%
!!! CTTAATTCGTCGGTTTTCTA+GGG + chr5_3:8868199-8868218 Msa0796860:intron 35.0%
GAAATCCATACCTCTTCAAA+AGG - chr5_3:8868593-8868612 None:intergenic 35.0%
! CTGTTCCTTTTTGTAGCTTT+TGG + chr5_3:8868612-8868631 Msa0796860:intron 35.0%
!!! GTAGCTTTTGGTTCTTTTCA+TGG + chr5_3:8868624-8868643 Msa0796860:intron 35.0%
! AAAGAGGTTGACTTTGTTGA+TGG + chr5_3:8868712-8868731 Msa0796860:CDS 35.0%
AGGAAAACTAAAAACCAAGG+GGG - chr5_3:8869099-8869118 None:intergenic 35.0%
!!! TTTTAGGGTGTGAAAAGAGA+GGG - chr5_3:8869137-8869156 None:intergenic 35.0%
!!! TTTTTAGGGTGTGAAAAGAG+AGG - chr5_3:8869138-8869157 None:intergenic 35.0%
TACCTTATCTTCATCAAAGG+GGG + chr5_3:8869210-8869229 Msa0796860:intron 35.0%
AAATGAACTGAAGATGATGC+TGG - chr5_3:8869305-8869324 None:intergenic 35.0%
AAAGTGCAACCACATAAGAA+TGG - chr5_3:8869428-8869447 None:intergenic 35.0%
!! TTCCTGAGTTCTTACTTTTG+TGG + chr5_3:8869502-8869521 Msa0796860:intron 35.0%
TTCCACAAAAGTAAGAACTC+AGG - chr5_3:8869507-8869526 None:intergenic 35.0%
CACACAAGAAATAGTTGAGA+AGG + chr5_3:8869638-8869657 Msa0796860:CDS 35.0%
CAAATCAGTAAACAAGGTCA+GGG - chr5_3:8869697-8869716 None:intergenic 35.0%
TGCAACCAAATCAGTAAACA+AGG - chr5_3:8869703-8869722 None:intergenic 35.0%
! TTTGAGATGATTCTGAACGC+GGG - chr5_3:8868086-8868105 None:intergenic 40.0%
! GTTTGAGATGATTCTGAACG+CGG - chr5_3:8868087-8868106 None:intergenic 40.0%
CGTTCAGAATCATCTCAAAC+AGG + chr5_3:8868087-8868106 Msa0796860:CDS 40.0%
GAATACCACCAATGTTGAGA+AGG - chr5_3:8868520-8868539 None:intergenic 40.0%
ATCCATACCTCTTCAAAAGG+AGG - chr5_3:8868590-8868609 None:intergenic 40.0%
TTTATGGTATGCAGCGAAAG+AGG + chr5_3:8868696-8868715 Msa0796860:intron 40.0%
! ATGTTTCAGGGTGCTTCTAT+TGG + chr5_3:8868743-8868762 Msa0796860:CDS 40.0%
TGTGGTCATTGAATCTCACA+AGG + chr5_3:8868872-8868891 Msa0796860:intron 40.0%
GTGGTCATTGAATCTCACAA+GGG + chr5_3:8868873-8868892 Msa0796860:intron 40.0%
TTCCCCCTTTGATGAAGATA+AGG - chr5_3:8869215-8869234 None:intergenic 40.0%
ATCTTCATCAAAGGGGGAAA+AGG + chr5_3:8869216-8869235 Msa0796860:intron 40.0%
TGAAGATGATGCTGGAACAA+TGG - chr5_3:8869297-8869316 None:intergenic 40.0%
AATGGCTCTCGTTAAGTTTG+AGG + chr5_3:8869471-8869490 Msa0796860:CDS 40.0%
!! GCAGTTGTATTTTGGGCTTT+TGG + chr5_3:8869590-8869609 Msa0796860:intron 40.0%
!!! TTTTGGGCTTTTGGTGTTTG+TGG + chr5_3:8869599-8869618 Msa0796860:CDS 40.0%
!!! TTTGGGCTTTTGGTGTTTGT+GGG + chr5_3:8869600-8869619 Msa0796860:CDS 40.0%
! ATAGTTGAGAAGGCACACTT+TGG + chr5_3:8869648-8869667 Msa0796860:CDS 40.0%
CCAAATCAGTAAACAAGGTC+AGG - chr5_3:8869698-8869717 None:intergenic 40.0%
! CCTGACCTTGTTTACTGATT+TGG + chr5_3:8869695-8869714 Msa0796860:CDS 40.0%
GAATAATTCAGACAAGAGGG+CGG + chr5_3:8869860-8869879 Msa0796860:CDS 40.0%
GACTCTTCTCCTGTAATCTT+TGG + chr5_3:8869942-8869961 Msa0796860:three_prime_UTR 40.0%
AACATGACTAACTGCACAGT+GGG - chr5_3:8870027-8870046 None:intergenic 40.0%
AAACATGACTAACTGCACAG+TGG - chr5_3:8870028-8870047 None:intergenic 40.0%
ATTTGAAAGAGACGGGTAGA+TGG - chr5_3:8867877-8867896 None:intergenic 40.0%
! TTTGAGATGATTCTGAACGC+GGG - chr5_3:8868086-8868105 None:intergenic 40.0%
! GTTTGAGATGATTCTGAACG+CGG - chr5_3:8868087-8868106 None:intergenic 40.0%
CGTTCAGAATCATCTCAAAC+AGG + chr5_3:8868087-8868106 Msa0796860:CDS 40.0%
GAATACCACCAATGTTGAGA+AGG - chr5_3:8868520-8868539 None:intergenic 40.0%
ATCCATACCTCTTCAAAAGG+AGG - chr5_3:8868590-8868609 None:intergenic 40.0%
TTTATGGTATGCAGCGAAAG+AGG + chr5_3:8868696-8868715 Msa0796860:intron 40.0%
! ATGTTTCAGGGTGCTTCTAT+TGG + chr5_3:8868743-8868762 Msa0796860:CDS 40.0%
TGTGGTCATTGAATCTCACA+AGG + chr5_3:8868872-8868891 Msa0796860:intron 40.0%
GTGGTCATTGAATCTCACAA+GGG + chr5_3:8868873-8868892 Msa0796860:intron 40.0%
TTCCCCCTTTGATGAAGATA+AGG - chr5_3:8869215-8869234 None:intergenic 40.0%
ATCTTCATCAAAGGGGGAAA+AGG + chr5_3:8869216-8869235 Msa0796860:intron 40.0%
TGAAGATGATGCTGGAACAA+TGG - chr5_3:8869297-8869316 None:intergenic 40.0%
AATGGCTCTCGTTAAGTTTG+AGG + chr5_3:8869471-8869490 Msa0796860:CDS 40.0%
!! GCAGTTGTATTTTGGGCTTT+TGG + chr5_3:8869590-8869609 Msa0796860:intron 40.0%
!!! TTTTGGGCTTTTGGTGTTTG+TGG + chr5_3:8869599-8869618 Msa0796860:CDS 40.0%
!!! TTTGGGCTTTTGGTGTTTGT+GGG + chr5_3:8869600-8869619 Msa0796860:CDS 40.0%
! ATAGTTGAGAAGGCACACTT+TGG + chr5_3:8869648-8869667 Msa0796860:CDS 40.0%
CCAAATCAGTAAACAAGGTC+AGG - chr5_3:8869698-8869717 None:intergenic 40.0%
! CCTGACCTTGTTTACTGATT+TGG + chr5_3:8869695-8869714 Msa0796860:CDS 40.0%
GAATAATTCAGACAAGAGGG+CGG + chr5_3:8869860-8869879 Msa0796860:CDS 40.0%
GACTCTTCTCCTGTAATCTT+TGG + chr5_3:8869942-8869961 Msa0796860:three_prime_UTR 40.0%
AACATGACTAACTGCACAGT+GGG - chr5_3:8870027-8870046 None:intergenic 40.0%
AAACATGACTAACTGCACAG+TGG - chr5_3:8870028-8870047 None:intergenic 40.0%
TCTTCGATTCAACACCTCGA+TGG + chr5_3:8868023-8868042 Msa0796860:CDS 45.0%
TTGAGATGATTCTGAACGCG+GGG - chr5_3:8868085-8868104 None:intergenic 45.0%
TTTGACCTTGTGTTTCGCTG+TGG + chr5_3:8868463-8868482 Msa0796860:CDS 45.0%
CAATGTTGAGAAGGACATGG+AGG - chr5_3:8868511-8868530 None:intergenic 45.0%
CTCCATGTCCTTCTCAACAT+TGG + chr5_3:8868509-8868528 Msa0796860:CDS 45.0%
CACCAATGTTGAGAAGGACA+TGG - chr5_3:8868514-8868533 None:intergenic 45.0%
CATGTCCTTCTCAACATTGG+TGG + chr5_3:8868512-8868531 Msa0796860:CDS 45.0%
TCTTACCACAATTGCGTGTG+TGG + chr5_3:8868538-8868557 Msa0796860:CDS 45.0%
CTTACCACAATTGCGTGTGT+GGG + chr5_3:8868539-8868558 Msa0796860:CDS 45.0%
AATTCCCACACACGCAATTG+TGG - chr5_3:8868546-8868565 None:intergenic 45.0%
CGTGTGTGGGAATTAGTGTT+TGG + chr5_3:8868552-8868571 Msa0796860:CDS 45.0%
!! CTCAACACCTCCTTTTGAAG+AGG + chr5_3:8868580-8868599 Msa0796860:CDS 45.0%
!! CACCTCCTTTTGAAGAGGTA+TGG + chr5_3:8868585-8868604 Msa0796860:intron 45.0%
!! TTTGTGGTTTGCTGGTGCAT+TGG + chr5_3:8868818-8868837 Msa0796860:intron 45.0%
!! TTGTGGTTTGCTGGTGCATT+GGG + chr5_3:8868819-8868838 Msa0796860:intron 45.0%
TTTGTGTGAAGCCAACCAAG+TGG + chr5_3:8868971-8868990 Msa0796860:intron 45.0%
TTCATCAAAGGGGGAAAAGG+TGG + chr5_3:8869219-8869238 Msa0796860:intron 45.0%
TCATCAAAGGGGGAAAAGGT+GGG + chr5_3:8869220-8869239 Msa0796860:intron 45.0%
TTCATTTGTCGCAACTGCCT+TGG + chr5_3:8869318-8869337 Msa0796860:CDS 45.0%
!! TTGGTGGCTTGGTTTCTTCT+GGG + chr5_3:8869398-8869417 Msa0796860:CDS 45.0%
CTGGGTTGTCCATTCTTATG+TGG + chr5_3:8869416-8869435 Msa0796860:CDS 45.0%
CACTTTGCTTCTGCCATCTT+TGG + chr5_3:8869442-8869461 Msa0796860:CDS 45.0%
TTTGCTTCTGCCATCTTTGG+AGG + chr5_3:8869445-8869464 Msa0796860:CDS 45.0%
! TGCCATCTTTGGAGGTTCAA+TGG + chr5_3:8869453-8869472 Msa0796860:CDS 45.0%
AGCCATTGAACCTCCAAAGA+TGG - chr5_3:8869458-8869477 None:intergenic 45.0%
GTGGGAACAAGTTCAAGACA+TGG - chr5_3:8870009-8870028 None:intergenic 45.0%
TCTTCGATTCAACACCTCGA+TGG + chr5_3:8868023-8868042 Msa0796860:CDS 45.0%
TTGAGATGATTCTGAACGCG+GGG - chr5_3:8868085-8868104 None:intergenic 45.0%
TTTGACCTTGTGTTTCGCTG+TGG + chr5_3:8868463-8868482 Msa0796860:CDS 45.0%
CAATGTTGAGAAGGACATGG+AGG - chr5_3:8868511-8868530 None:intergenic 45.0%
CTCCATGTCCTTCTCAACAT+TGG + chr5_3:8868509-8868528 Msa0796860:CDS 45.0%
CACCAATGTTGAGAAGGACA+TGG - chr5_3:8868514-8868533 None:intergenic 45.0%
CATGTCCTTCTCAACATTGG+TGG + chr5_3:8868512-8868531 Msa0796860:CDS 45.0%
TCTTACCACAATTGCGTGTG+TGG + chr5_3:8868538-8868557 Msa0796860:CDS 45.0%
CTTACCACAATTGCGTGTGT+GGG + chr5_3:8868539-8868558 Msa0796860:CDS 45.0%
AATTCCCACACACGCAATTG+TGG - chr5_3:8868546-8868565 None:intergenic 45.0%
CGTGTGTGGGAATTAGTGTT+TGG + chr5_3:8868552-8868571 Msa0796860:CDS 45.0%
!! CTCAACACCTCCTTTTGAAG+AGG + chr5_3:8868580-8868599 Msa0796860:CDS 45.0%
!! CACCTCCTTTTGAAGAGGTA+TGG + chr5_3:8868585-8868604 Msa0796860:intron 45.0%
!! TTTGTGGTTTGCTGGTGCAT+TGG + chr5_3:8868818-8868837 Msa0796860:intron 45.0%
!! TTGTGGTTTGCTGGTGCATT+GGG + chr5_3:8868819-8868838 Msa0796860:intron 45.0%
TTTGTGTGAAGCCAACCAAG+TGG + chr5_3:8868971-8868990 Msa0796860:intron 45.0%
TTCATCAAAGGGGGAAAAGG+TGG + chr5_3:8869219-8869238 Msa0796860:intron 45.0%
TCATCAAAGGGGGAAAAGGT+GGG + chr5_3:8869220-8869239 Msa0796860:intron 45.0%
TTCATTTGTCGCAACTGCCT+TGG + chr5_3:8869318-8869337 Msa0796860:CDS 45.0%
!! TTGGTGGCTTGGTTTCTTCT+GGG + chr5_3:8869398-8869417 Msa0796860:CDS 45.0%
CTGGGTTGTCCATTCTTATG+TGG + chr5_3:8869416-8869435 Msa0796860:CDS 45.0%
CACTTTGCTTCTGCCATCTT+TGG + chr5_3:8869442-8869461 Msa0796860:CDS 45.0%
TTTGCTTCTGCCATCTTTGG+AGG + chr5_3:8869445-8869464 Msa0796860:CDS 45.0%
! TGCCATCTTTGGAGGTTCAA+TGG + chr5_3:8869453-8869472 Msa0796860:CDS 45.0%
AGCCATTGAACCTCCAAAGA+TGG - chr5_3:8869458-8869477 None:intergenic 45.0%
GTGGGAACAAGTTCAAGACA+TGG - chr5_3:8870009-8870028 None:intergenic 45.0%
!! TAATATAAATATATAAAGTT+TGG + chr5_3:8867916-8867935 Msa0796860:five_prime_UTR 5.0%
!!! ATATATCTTTTTTTTTTTTT+TGG - chr5_3:8868286-8868305 None:intergenic 5.0%
!! TAATATAAATATATAAAGTT+TGG + chr5_3:8867916-8867935 Msa0796860:five_prime_UTR 5.0%
!!! ATATATCTTTTTTTTTTTTT+TGG - chr5_3:8868286-8868305 None:intergenic 5.0%
!! GTTGACTTTGTTGATGGCCG+CGG + chr5_3:8868718-8868737 Msa0796860:CDS 50.0%
CGGCTATTCAAGTCGATCCA+AGG + chr5_3:8868780-8868799 Msa0796860:CDS 50.0%
!! TGTGGTTTGCTGGTGCATTG+GGG + chr5_3:8868820-8868839 Msa0796860:intron 50.0%
GCGGGTGGCTTAGCTAATAT+CGG + chr5_3:8868993-8869012 Msa0796860:intron 50.0%
CATCAAAGGGGGAAAAGGTG+GGG + chr5_3:8869221-8869240 Msa0796860:intron 50.0%
! CTTGGCTTTCGGGTGTTTCT+CGG + chr5_3:8869336-8869355 Msa0796860:CDS 50.0%
! TTGGCTTTCGGGTGTTTCTC+GGG + chr5_3:8869337-8869356 Msa0796860:CDS 50.0%
! AGCTTTGGTTGCTAAGCGCA+GGG + chr5_3:8869363-8869382 Msa0796860:CDS 50.0%
AAACCAAGCCACCAAGGTAG+AGG - chr5_3:8869393-8869412 None:intergenic 50.0%
CAGAAGAAACCAAGCCACCA+AGG - chr5_3:8869399-8869418 None:intergenic 50.0%
!! CTTGGTGGCTTGGTTTCTTC+TGG + chr5_3:8869397-8869416 Msa0796860:CDS 50.0%
TAATTCAGACAAGAGGGCGG+AGG + chr5_3:8869863-8869882 Msa0796860:CDS 50.0%
!! GTTGACTTTGTTGATGGCCG+CGG + chr5_3:8868718-8868737 Msa0796860:CDS 50.0%
CGGCTATTCAAGTCGATCCA+AGG + chr5_3:8868780-8868799 Msa0796860:CDS 50.0%
!! TGTGGTTTGCTGGTGCATTG+GGG + chr5_3:8868820-8868839 Msa0796860:intron 50.0%
GCGGGTGGCTTAGCTAATAT+CGG + chr5_3:8868993-8869012 Msa0796860:intron 50.0%
CATCAAAGGGGGAAAAGGTG+GGG + chr5_3:8869221-8869240 Msa0796860:intron 50.0%
! CTTGGCTTTCGGGTGTTTCT+CGG + chr5_3:8869336-8869355 Msa0796860:CDS 50.0%
! TTGGCTTTCGGGTGTTTCTC+GGG + chr5_3:8869337-8869356 Msa0796860:CDS 50.0%
! AGCTTTGGTTGCTAAGCGCA+GGG + chr5_3:8869363-8869382 Msa0796860:CDS 50.0%
AAACCAAGCCACCAAGGTAG+AGG - chr5_3:8869393-8869412 None:intergenic 50.0%
CAGAAGAAACCAAGCCACCA+AGG - chr5_3:8869399-8869418 None:intergenic 50.0%
!! CTTGGTGGCTTGGTTTCTTC+TGG + chr5_3:8869397-8869416 Msa0796860:CDS 50.0%
TAATTCAGACAAGAGGGCGG+AGG + chr5_3:8869863-8869882 Msa0796860:CDS 50.0%
GACCTTGTGTTTCGCTGTGG+TGG + chr5_3:8868466-8868485 Msa0796860:CDS 55.0%
AGCCACCACAGCGAAACACA+AGG - chr5_3:8868471-8868490 None:intergenic 55.0%
ATGGCCGCGGCAATGTTTCA+GGG + chr5_3:8868731-8868750 Msa0796860:CDS 55.0%
AGCACCCTGAAACATTGCCG+CGG - chr5_3:8868738-8868757 None:intergenic 55.0%
TGCTGGTGCATTGGGGTCTT+TGG + chr5_3:8868827-8868846 Msa0796860:intron 55.0%
GTGTGAAGCCAACCAAGTGG+CGG + chr5_3:8868974-8868993 Msa0796860:intron 55.0%
TGTGAAGCCAACCAAGTGGC+GGG + chr5_3:8868975-8868994 Msa0796860:intron 55.0%
TCAGCTGTTCAGTTCCCCCT+TGG + chr5_3:8869082-8869101 Msa0796860:intron 55.0%
GAGGGCTAAACGCCAACACA+AGG - chr5_3:8869119-8869138 None:intergenic 55.0%
! AGGGGGAAAAGGTGGGGTTT+TGG + chr5_3:8869227-8869246 Msa0796860:intron 55.0%
! GTCGCAACTGCCTTGGCTTT+CGG + chr5_3:8869325-8869344 Msa0796860:CDS 55.0%
! TCGCAACTGCCTTGGCTTTC+GGG + chr5_3:8869326-8869345 Msa0796860:CDS 55.0%
CGAGAAACACCCGAAAGCCA+AGG - chr5_3:8869338-8869357 None:intergenic 55.0%
GTGTTTCTCGGGAGCAGCTT+TGG + chr5_3:8869348-8869367 Msa0796860:CDS 55.0%
! CAGCTTTGGTTGCTAAGCGC+AGG + chr5_3:8869362-8869381 Msa0796860:CDS 55.0%
!! AGGGAGTACCTCTACCTTGG+TGG + chr5_3:8869382-8869401 Msa0796860:CDS 55.0%
! GTACCTCTACCTTGGTGGCT+TGG + chr5_3:8869387-8869406 Msa0796860:CDS 55.0%
GACCTTGTGTTTCGCTGTGG+TGG + chr5_3:8868466-8868485 Msa0796860:CDS 55.0%
AGCCACCACAGCGAAACACA+AGG - chr5_3:8868471-8868490 None:intergenic 55.0%
ATGGCCGCGGCAATGTTTCA+GGG + chr5_3:8868731-8868750 Msa0796860:CDS 55.0%
AGCACCCTGAAACATTGCCG+CGG - chr5_3:8868738-8868757 None:intergenic 55.0%
TGCTGGTGCATTGGGGTCTT+TGG + chr5_3:8868827-8868846 Msa0796860:intron 55.0%
GTGTGAAGCCAACCAAGTGG+CGG + chr5_3:8868974-8868993 Msa0796860:intron 55.0%
TGTGAAGCCAACCAAGTGGC+GGG + chr5_3:8868975-8868994 Msa0796860:intron 55.0%
TCAGCTGTTCAGTTCCCCCT+TGG + chr5_3:8869082-8869101 Msa0796860:intron 55.0%
GAGGGCTAAACGCCAACACA+AGG - chr5_3:8869119-8869138 None:intergenic 55.0%
! AGGGGGAAAAGGTGGGGTTT+TGG + chr5_3:8869227-8869246 Msa0796860:intron 55.0%
! GTCGCAACTGCCTTGGCTTT+CGG + chr5_3:8869325-8869344 Msa0796860:CDS 55.0%
! TCGCAACTGCCTTGGCTTTC+GGG + chr5_3:8869326-8869345 Msa0796860:CDS 55.0%
CGAGAAACACCCGAAAGCCA+AGG - chr5_3:8869338-8869357 None:intergenic 55.0%
GTGTTTCTCGGGAGCAGCTT+TGG + chr5_3:8869348-8869367 Msa0796860:CDS 55.0%
! CAGCTTTGGTTGCTAAGCGC+AGG + chr5_3:8869362-8869381 Msa0796860:CDS 55.0%
!! AGGGAGTACCTCTACCTTGG+TGG + chr5_3:8869382-8869401 Msa0796860:CDS 55.0%
! GTACCTCTACCTTGGTGGCT+TGG + chr5_3:8869387-8869406 Msa0796860:CDS 55.0%
GCTGTGGTGGCTGCTTCTGT+TGG + chr5_3:8868479-8868498 Msa0796860:CDS 60.0%
GATGGCCGCGGCAATGTTTC+AGG + chr5_3:8868730-8868749 Msa0796860:CDS 60.0%
TAAGCCACCCGCCACTTGGT+TGG - chr5_3:8868985-8869004 None:intergenic 60.0%
TAGCTAAGCCACCCGCCACT+TGG - chr5_3:8868989-8869008 None:intergenic 60.0%
!! CGCAGGGAGTACCTCTACCT+TGG + chr5_3:8869379-8869398 Msa0796860:CDS 60.0%
TTCAGACAAGAGGGCGGAGG+AGG + chr5_3:8869866-8869885 Msa0796860:CDS 60.0%
GCTGTGGTGGCTGCTTCTGT+TGG + chr5_3:8868479-8868498 Msa0796860:CDS 60.0%
GATGGCCGCGGCAATGTTTC+AGG + chr5_3:8868730-8868749 Msa0796860:CDS 60.0%
TAAGCCACCCGCCACTTGGT+TGG - chr5_3:8868985-8869004 None:intergenic 60.0%
TAGCTAAGCCACCCGCCACT+TGG - chr5_3:8868989-8869008 None:intergenic 60.0%
!! CGCAGGGAGTACCTCTACCT+TGG + chr5_3:8869379-8869398 Msa0796860:CDS 60.0%
TTCAGACAAGAGGGCGGAGG+AGG + chr5_3:8869866-8869885 Msa0796860:CDS 60.0%
! GAAGCCAACCAAGTGGCGGG+TGG + chr5_3:8868978-8868997 Msa0796860:intron 65.0%
! GAAGCCAACCAAGTGGCGGG+TGG + chr5_3:8868978-8868997 Msa0796860:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 8867876 8870294 8867876 ID=Msa0796860;Name=Msa0796860
chr5_3 mRNA 8867876 8870294 8867876 ID=Msa0796860-mRNA-1;Parent=Msa0796860;Name=Msa0796860-mRNA-1;_AED=0.08;_eAED=0.08;_QI=128|1|1|1|1|1|6|377|247
chr5_3 exon 8867876 8868108 8867876 ID=Msa0796860-mRNA-1:exon:3725;Parent=Msa0796860-mRNA-1
chr5_3 exon 8868458 8868601 8868458 ID=Msa0796860-mRNA-1:exon:3726;Parent=Msa0796860-mRNA-1
chr5_3 exon 8868710 8868801 8868710 ID=Msa0796860-mRNA-1:exon:3727;Parent=Msa0796860-mRNA-1
chr5_3 exon 8869306 8869492 8869306 ID=Msa0796860-mRNA-1:exon:3728;Parent=Msa0796860-mRNA-1
chr5_3 exon 8869594 8869749 8869594 ID=Msa0796860-mRNA-1:exon:3729;Parent=Msa0796860-mRNA-1
chr5_3 exon 8869858 8870294 8869858 ID=Msa0796860-mRNA-1:exon:3730;Parent=Msa0796860-mRNA-1
chr5_3 five_prime_UTR 8867876 8868003 8867876 ID=Msa0796860-mRNA-1:five_prime_utr;Parent=Msa0796860-mRNA-1
chr5_3 CDS 8868004 8868108 8868004 ID=Msa0796860-mRNA-1:cds;Parent=Msa0796860-mRNA-1
chr5_3 CDS 8868458 8868601 8868458 ID=Msa0796860-mRNA-1:cds;Parent=Msa0796860-mRNA-1
chr5_3 CDS 8868710 8868801 8868710 ID=Msa0796860-mRNA-1:cds;Parent=Msa0796860-mRNA-1
chr5_3 CDS 8869306 8869492 8869306 ID=Msa0796860-mRNA-1:cds;Parent=Msa0796860-mRNA-1
chr5_3 CDS 8869594 8869749 8869594 ID=Msa0796860-mRNA-1:cds;Parent=Msa0796860-mRNA-1
chr5_3 CDS 8869858 8869917 8869858 ID=Msa0796860-mRNA-1:cds;Parent=Msa0796860-mRNA-1
chr5_3 three_prime_UTR 8869918 8870294 8869918 ID=Msa0796860-mRNA-1:three_prime_utr;Parent=Msa0796860-mRNA-1
Gene Sequence

>Msa0796860

ATGGATTCATTCGCTTCGTTCTTCGATTCAACACCTCGATGGAATTTCAATACTCTCAAAAACTTCAATCAGATTTCTCCCCGCGTTCAGAATCATCTCAAACAGGTTTATTTGACCTTGTGTTTCGCTGTGGTGGCTGCTTCTGTTGGAGCTTACCTCCATGTCCTTCTCAACATTGGTGGTATTCTTACCACAATTGCGTGTGTGGGAATTAGTGTTTGGTTACTCTCAACACCTCCTTTTGAAGAGCGAAAGAGGTTGACTTTGTTGATGGCCGCGGCAATGTTTCAGGGTGCTTCTATTGGACCCTTGATTAATTCGGCTATTCAAGTCGATCCAAGCATCATCTTCAGTTCATTTGTCGCAACTGCCTTGGCTTTCGGGTGTTTCTCGGGAGCAGCTTTGGTTGCTAAGCGCAGGGAGTACCTCTACCTTGGTGGCTTGGTTTCTTCTGGGTTGTCCATTCTTATGTGGTTGCACTTTGCTTCTGCCATCTTTGGAGGTTCAATGGCTCTCGTTAAGTTTGAGTTGTATTTTGGGCTTTTGGTGTTTGTGGGTTACATTGTAGTAGACACACAAGAAATAGTTGAGAAGGCACACTTTGGTGATCTCGATTATGTGAAGCATGCCCTGACCTTGTTTACTGATTTGGTTGCAATTTTTGTCCGGATTCTACTCATCATTTTGAATAATTCAGACAAGAGGGCGGAGGAGGAGAAGAAGAAAAAGAAGAGAAGAGAATAA
Protein sequence

>Msa0796860

MDSFASFFDSTPRWNFNTLKNFNQISPRVQNHLKQVYLTLCFAVVAASVGAYLHVLLNIGGILTTIACVGISVWLLSTPPFEERKRLTLLMAAAMFQGASIGPLINSAIQVDPSIIFSSFVATALAFGCFSGAALVAKRREYLYLGGLVSSGLSILMWLHFASAIFGGSMALVKFELYFGLLVFVGYIVVDTQEIVEKAHFGDLDYVKHALTLFTDLVAIFVRILLIILNNSDKRAEEEKKKKKRRE*