AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0754890

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0754890 MtrunA17_Chr5g0399751 94.805 231 12 0 1 231 1 231 1.68e-155 431
Msa0754890 MtrunA17_Chr6g0484011 78.947 95 20 0 86 180 2 96 5.51e-47 151
Msa0754890 MtrunA17_Chr4g0055621 61.600 125 40 2 78 199 41 160 2.68e-34 121
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0754890 AT5G47120.1 70.213 235 67 1 1 232 1 235 1.74e-111 321
Msa0754890 AT4G17580.1 47.934 242 111 2 14 242 8 247 2.13e-73 224
Msa0754890 AT5G47130.2 45.455 231 114 3 17 242 2 225 1.57e-66 206
Msa0754890 AT5G47130.1 45.070 213 105 3 35 242 2 207 2.15e-58 184
Msa0754890 AT5G47130.3 45.550 191 92 3 57 242 3 186 1.97e-52 168

Find 82 sgRNAs with CRISPR-Local

Find 357 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGGTGGCTTGGTTTCTTC+TGG 0.110151 5_2:+8595951 Msa0754890:CDS
TCGCAACTGCCTTGGCTTTC+GGG 0.124016 5_2:+8595880 Msa0754890:CDS
CACTTTGCTTCTGCCATCTT+TGG 0.129193 5_2:+8595996 Msa0754890:CDS
GTCGCAACTGCCTTGGCTTT+CGG 0.172277 5_2:+8595879 Msa0754890:CDS
GGTAAAACTGGATACTATTA+TGG 0.189983 5_2:+8596707 Msa0754890:three_prime_UTR
GACTCTTCTCCTGTAATCTT+TGG 0.201689 5_2:+8596496 Msa0754890:three_prime_UTR
GATGGCCGCGGCAATGTTTC+AGG 0.202705 5_2:+8595284 Msa0754890:CDS
CCTGACCTTGTTTACTGATT+TGG 0.272374 5_2:+8596249 Msa0754890:CDS
CTTGGCTTTCGGGTGTTTCT+CGG 0.282337 5_2:+8595890 Msa0754890:CDS
TAGAAGGAATTCTTGTAGTT+TGG 0.291082 5_2:+8596749 Msa0754890:three_prime_UTR
TAATATAAATATATAAAGTT+TGG 0.293550 5_2:+8594451 Msa0754890:five_prime_UTR
ATGTTTCAGGGTGCTTCTAT+TGG 0.319086 5_2:+8595297 Msa0754890:CDS
TATTGGACCCTTGATTAATT+CGG 0.322576 5_2:+8595314 Msa0754890:CDS
TGCCATCTTTGGAGGTTCAA+TGG 0.338989 5_2:+8596007 Msa0754890:CDS
TACTATCATCCAAAGATTAC+AGG 0.350839 5_2:-8596505 None:intergenic
TTGGTGGCTTGGTTTCTTCT+GGG 0.360140 5_2:+8595952 Msa0754890:CDS
GTACCTCTACCTTGGTGGCT+TGG 0.360734 5_2:+8595941 Msa0754890:CDS
GTGTTTCTCGGGAGCAGCTT+TGG 0.393747 5_2:+8595902 Msa0754890:CDS
AAAGAGGTTGACTTTGTTGA+TGG 0.398644 5_2:+8595266 Msa0754890:CDS
TTGGCTTTCGGGTGTTTCTC+GGG 0.400338 5_2:+8595891 Msa0754890:CDS
AAGAGTCAAACAAGTTTGAT+TGG 0.408233 5_2:-8596480 None:intergenic
TTTGAAAGAGACGGGTAGAT+AGG 0.414173 5_2:-8594408 None:intergenic
TTTGCTTCTGCCATCTTTGG+AGG 0.415758 5_2:+8595999 Msa0754890:CDS
AATGGCTCTCGTTAAGTTTG+AGG 0.419587 5_2:+8596025 Msa0754890:CDS
TTCATTTGTCGCAACTGCCT+TGG 0.420717 5_2:+8595872 Msa0754890:CDS
CCAAATCAGTAAACAAGGTC+AGG 0.425444 5_2:-8596249 None:intergenic
CTGGGTTGTCCATTCTTATG+TGG 0.437083 5_2:+8595970 Msa0754890:CDS
GCTGTGGTGGCTGCTTCTGT+TGG 0.440092 5_2:+8595033 Msa0754890:CDS
TTCAGACAAGAGGGCGGAGG+AGG 0.445802 5_2:+8596420 Msa0754890:CDS
GTAAAACTGGATACTATTAT+GGG 0.456825 5_2:+8596708 Msa0754890:three_prime_UTR
CAGCTTTGGTTGCTAAGCGC+AGG 0.458313 5_2:+8595916 Msa0754890:CDS
CGTTCAGAATCATCTCAAAC+AGG 0.459060 5_2:+8594618 Msa0754890:CDS
ATGGCCGCGGCAATGTTTCA+GGG 0.465472 5_2:+8595285 Msa0754890:CDS
GAAATCCATACCTCTTCAAA+AGG 0.471008 5_2:-8595144 None:intergenic
ATTTAATATTTGAAAGAGAC+GGG 0.471847 5_2:-8594416 None:intergenic
TTGAATAGCCGAATTAATCA+AGG 0.480018 5_2:-8595322 None:intergenic
CGTGTGTGGGAATTAGTGTT+TGG 0.486280 5_2:+8595106 Msa0754890:CDS
CTCCATGTCCTTCTCAACAT+TGG 0.493334 5_2:+8595063 Msa0754890:CDS
CATGTCCTTCTCAACATTGG+TGG 0.511225 5_2:+8595066 Msa0754890:CDS
TCTTACCACAATTGCGTGTG+TGG 0.522216 5_2:+8595092 Msa0754890:CDS
GTTGACTTTGTTGATGGCCG+CGG 0.524903 5_2:+8595272 Msa0754890:CDS
GACCTTGTGTTTCGCTGTGG+TGG 0.526552 5_2:+8595020 Msa0754890:CDS
TTTATGGTATGCAGCGAAAG+AGG 0.532864 5_2:+8595250 Msa0754890:intron
AGCCATTGAACCTCCAAAGA+TGG 0.536659 5_2:-8596009 None:intergenic
TATTTAATATTTGAAAGAGA+CGG 0.543689 5_2:-8594417 None:intergenic
CGAGAAACACCCGAAAGCCA+AGG 0.557128 5_2:-8595889 None:intergenic
CACACAAGAAATAGTTGAGA+AGG 0.562976 5_2:+8596192 Msa0754890:CDS
AGCTTTGGTTGCTAAGCGCA+GGG 0.566850 5_2:+8595917 Msa0754890:CDS
AAACCAAGCCACCAAGGTAG+AGG 0.568434 5_2:-8595944 None:intergenic
TTACAATGATGAGTAGAATC+CGG 0.571426 5_2:-8596285 None:intergenic
GAATTCCTTCTAATTCATGA+AGG 0.572011 5_2:-8596738 None:intergenic
AGGGAGTACCTCTACCTTGG+TGG 0.572036 5_2:+8595936 Msa0754890:CDS
AACATGACTAACTGCACAGT+GGG 0.575870 5_2:-8596578 None:intergenic
ATAGTTGAGAAGGCACACTT+TGG 0.576217 5_2:+8596202 Msa0754890:CDS
AGCCACCACAGCGAAACACA+AGG 0.576748 5_2:-8595022 None:intergenic
TCTTCGATTCAACACCTCGA+TGG 0.580588 5_2:+8594554 Msa0754890:CDS
CGGCTATTCAAGTCGATCCA+AGG 0.582719 5_2:+8595334 Msa0754890:CDS
GAATACCACCAATGTTGAGA+AGG 0.591899 5_2:-8595071 None:intergenic
AAAGTGCAACCACATAAGAA+TGG 0.591952 5_2:-8595979 None:intergenic
ATCCATACCTCTTCAAAAGG+AGG 0.597690 5_2:-8595141 None:intergenic
AATTCCCACACACGCAATTG+TGG 0.599033 5_2:-8595097 None:intergenic
CTTACCACAATTGCGTGTGT+GGG 0.603529 5_2:+8595093 Msa0754890:CDS
TGCAACCAAATCAGTAAACA+AGG 0.603621 5_2:-8596254 None:intergenic
GTTGAATAATTCAGACAAGA+GGG 0.610812 5_2:+8596411 Msa0754890:intron
AGTTGAATAATTCAGACAAG+AGG 0.616446 5_2:+8596410 Msa0754890:intron
CAGAAGAAACCAAGCCACCA+AGG 0.620970 5_2:-8595950 None:intergenic
TAATTCAGACAAGAGGGCGG+AGG 0.621526 5_2:+8596417 Msa0754890:CDS
GTTTGAGATGATTCTGAACG+CGG 0.622509 5_2:-8594615 None:intergenic
TTTGAGATGATTCTGAACGC+GGG 0.635009 5_2:-8594614 None:intergenic
CACCAATGTTGAGAAGGACA+TGG 0.637929 5_2:-8595065 None:intergenic
CAAATCAGTAAACAAGGTCA+GGG 0.638032 5_2:-8596248 None:intergenic
TTGAGATGATTCTGAACGCG+GGG 0.639066 5_2:-8594613 None:intergenic
TGAATAGCCGAATTAATCAA+GGG 0.652441 5_2:-8595321 None:intergenic
TAAAACTGGATACTATTATG+GGG 0.653682 5_2:+8596709 Msa0754890:three_prime_UTR
GTGGGAACAAGTTCAAGACA+TGG 0.661999 5_2:-8596560 None:intergenic
AGCACCCTGAAACATTGCCG+CGG 0.662260 5_2:-8595289 None:intergenic
TTTGACCTTGTGTTTCGCTG+TGG 0.664849 5_2:+8595017 Msa0754890:CDS
CAATGTTGAGAAGGACATGG+AGG 0.708038 5_2:-8595062 None:intergenic
AGGAAAGGAACACAACTGCG+TGG 0.722879 5_2:-8596827 None:intergenic
GAATAATTCAGACAAGAGGG+CGG 0.723996 5_2:+8596414 Msa0754890:CDS
AGAGTATTGAAATTCCATCG+AGG 0.736875 5_2:-8594568 None:intergenic
AAACATGACTAACTGCACAG+TGG 0.752592 5_2:-8596579 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAATATATCTTTTTTTTTTT+TGG - chr5_2:8594842-8594861 None:intergenic 10.0%
!!! GTATAATATAATTTTAGTTT+TGG + chr5_2:8595803-8595822 Msa0754890:intron 10.0%
!!! GAATATATCTTTTTTTTTTT+TGG - chr5_2:8594842-8594861 None:intergenic 10.0%
!!! GTATAATATAATTTTAGTTT+TGG + chr5_2:8595803-8595822 Msa0754890:intron 10.0%
!! TATTTAATATTTGAAAGAGA+CGG - chr5_2:8594420-8594439 None:intergenic 15.0%
!!! AATGAAATCATTGAATTTTT+TGG + chr5_2:8594914-8594933 Msa0754890:intron 15.0%
!!! ATTGAATTTTTTGGAATAAT+GGG + chr5_2:8594923-8594942 Msa0754890:intron 15.0%
!!! AAGAATTAGCAATATTTTTA+GGG - chr5_2:8595706-8595725 None:intergenic 15.0%
!!! AAAGAATTAGCAATATTTTT+AGG - chr5_2:8595707-8595726 None:intergenic 15.0%
!!! TTTGTTTTTATAATGCTATA+AGG + chr5_2:8596093-8596112 Msa0754890:intron 15.0%
!!! TTTTAGTTTTCTAATAAAAG+AGG + chr5_2:8596630-8596649 Msa0754890:three_prime_UTR 15.0%
!!! TACCATTATTTTTTAAGATA+GGG + chr5_2:8596661-8596680 Msa0754890:three_prime_UTR 15.0%
!!! ACACAAGATTTTTTTTAAAT+GGG + chr5_2:8596686-8596705 Msa0754890:three_prime_UTR 15.0%
!!! TTAGAACTTTTTTATTGAAT+TGG + chr5_2:8596803-8596822 Msa0754890:three_prime_UTR 15.0%
!! TATTTAATATTTGAAAGAGA+CGG - chr5_2:8594420-8594439 None:intergenic 15.0%
!!! AATGAAATCATTGAATTTTT+TGG + chr5_2:8594914-8594933 Msa0754890:intron 15.0%
!!! ATTGAATTTTTTGGAATAAT+GGG + chr5_2:8594923-8594942 Msa0754890:intron 15.0%
!!! AAGAATTAGCAATATTTTTA+GGG - chr5_2:8595706-8595725 None:intergenic 15.0%
!!! AAAGAATTAGCAATATTTTT+AGG - chr5_2:8595707-8595726 None:intergenic 15.0%
!!! TTTGTTTTTATAATGCTATA+AGG + chr5_2:8596093-8596112 Msa0754890:intron 15.0%
!!! TTTTAGTTTTCTAATAAAAG+AGG + chr5_2:8596630-8596649 Msa0754890:three_prime_UTR 15.0%
!!! TACCATTATTTTTTAAGATA+GGG + chr5_2:8596661-8596680 Msa0754890:three_prime_UTR 15.0%
!!! ACACAAGATTTTTTTTAAAT+GGG + chr5_2:8596686-8596705 Msa0754890:three_prime_UTR 15.0%
!!! TTAGAACTTTTTTATTGAAT+TGG + chr5_2:8596803-8596822 Msa0754890:three_prime_UTR 15.0%
!! ATTTAATATTTGAAAGAGAC+GGG - chr5_2:8594419-8594438 None:intergenic 20.0%
!! TTCAATCATTTCAAATTTCT+AGG + chr5_2:8594669-8594688 Msa0754890:intron 20.0%
!! TCAATCATTTCAAATTTCTA+GGG + chr5_2:8594670-8594689 Msa0754890:intron 20.0%
!!! TTAAGCTAGTTTTGATTATT+AGG + chr5_2:8594870-8594889 Msa0754890:intron 20.0%
!!! TAAGCTAGTTTTGATTATTA+GGG + chr5_2:8594871-8594890 Msa0754890:intron 20.0%
!!! CATTGAATTTTTTGGAATAA+TGG + chr5_2:8594922-8594941 Msa0754890:intron 20.0%
!! TGTGTTGAATTAATTATTGT+AGG + chr5_2:8594990-8595009 Msa0754890:intron 20.0%
!! TAAAAAGAATGAAACAAACA+GGG - chr5_2:8595234-8595253 None:intergenic 20.0%
!! ATAAAAAGAATGAAACAAAC+AGG - chr5_2:8595235-8595254 None:intergenic 20.0%
!!! TGTTTGTTTCATTCTTTTTA+TGG + chr5_2:8595234-8595253 Msa0754890:intron 20.0%
!! TATATATGCTACATGAATAT+AGG - chr5_2:8595456-8595475 None:intergenic 20.0%
!!! GCTAATTCTTTTTTCATTTT+TGG + chr5_2:8595716-8595735 Msa0754890:intron 20.0%
!!! TTTCATTTTTGGTTATCAAA+AGG + chr5_2:8595727-8595746 Msa0754890:intron 20.0%
!!! GTACCATTATTTTTTAAGAT+AGG + chr5_2:8596660-8596679 Msa0754890:three_prime_UTR 20.0%
!! CATTTAAAAAAAATCTTGTG+TGG - chr5_2:8596687-8596706 None:intergenic 20.0%
!!! CACACAAGATTTTTTTTAAA+TGG + chr5_2:8596685-8596704 Msa0754890:three_prime_UTR 20.0%
!!! TTTTTTTAAATGGGTAAAAC+TGG + chr5_2:8596695-8596714 Msa0754890:three_prime_UTR 20.0%
!! ATTTAATATTTGAAAGAGAC+GGG - chr5_2:8594419-8594438 None:intergenic 20.0%
!! TTCAATCATTTCAAATTTCT+AGG + chr5_2:8594669-8594688 Msa0754890:intron 20.0%
!! TCAATCATTTCAAATTTCTA+GGG + chr5_2:8594670-8594689 Msa0754890:intron 20.0%
!!! TTAAGCTAGTTTTGATTATT+AGG + chr5_2:8594870-8594889 Msa0754890:intron 20.0%
!!! TAAGCTAGTTTTGATTATTA+GGG + chr5_2:8594871-8594890 Msa0754890:intron 20.0%
!!! CATTGAATTTTTTGGAATAA+TGG + chr5_2:8594922-8594941 Msa0754890:intron 20.0%
!! TGTGTTGAATTAATTATTGT+AGG + chr5_2:8594990-8595009 Msa0754890:intron 20.0%
!! TAAAAAGAATGAAACAAACA+GGG - chr5_2:8595234-8595253 None:intergenic 20.0%
!! ATAAAAAGAATGAAACAAAC+AGG - chr5_2:8595235-8595254 None:intergenic 20.0%
!!! TGTTTGTTTCATTCTTTTTA+TGG + chr5_2:8595234-8595253 Msa0754890:intron 20.0%
!! TATATATGCTACATGAATAT+AGG - chr5_2:8595456-8595475 None:intergenic 20.0%
!!! GCTAATTCTTTTTTCATTTT+TGG + chr5_2:8595716-8595735 Msa0754890:intron 20.0%
!!! TTTCATTTTTGGTTATCAAA+AGG + chr5_2:8595727-8595746 Msa0754890:intron 20.0%
!!! GTACCATTATTTTTTAAGAT+AGG + chr5_2:8596660-8596679 Msa0754890:three_prime_UTR 20.0%
!! CATTTAAAAAAAATCTTGTG+TGG - chr5_2:8596687-8596706 None:intergenic 20.0%
!!! CACACAAGATTTTTTTTAAA+TGG + chr5_2:8596685-8596704 Msa0754890:three_prime_UTR 20.0%
!!! TTTTTTTAAATGGGTAAAAC+TGG + chr5_2:8596695-8596714 Msa0754890:three_prime_UTR 20.0%
! AACAAACAAACAAAAAGCTA+TGG + chr5_2:8594516-8594535 Msa0754890:exon 25.0%
! ATTCAATTCTCTTAATTCGT+CGG + chr5_2:8594720-8594739 Msa0754890:intron 25.0%
!! TTTATGACCGGAATAATTTT+TGG + chr5_2:8594804-8594823 Msa0754890:intron 25.0%
!! AATATAATGAAAGCATACCT+TGG - chr5_2:8595354-8595373 None:intergenic 25.0%
! GTATGCTTTCATTATATTTG+TGG + chr5_2:8595356-8595375 Msa0754890:intron 25.0%
!!! TTTGTCAAAGTTTGATAATG+TGG + chr5_2:8595408-8595427 Msa0754890:intron 25.0%
!!! CTAAATTGCTAATTGTTTTG+TGG + chr5_2:8595494-8595513 Msa0754890:intron 25.0%
! TTATACCTTATCTTCATCAA+AGG + chr5_2:8595761-8595780 Msa0754890:intron 25.0%
! TATACCTTATCTTCATCAAA+GGG + chr5_2:8595762-8595781 Msa0754890:intron 25.0%
! TAATGCTATAAGGTTGTTTA+CGG + chr5_2:8596103-8596122 Msa0754890:intron 25.0%
!! TACTTTTGCAGTTGTATTTT+GGG + chr5_2:8596137-8596156 Msa0754890:intron 25.0%
! AACTGAAAGAGAAATCTAAA+AGG - chr5_2:8596328-8596347 None:intergenic 25.0%
! GTCAATACAATAGTTATAAG+AGG - chr5_2:8596372-8596391 None:intergenic 25.0%
!! CTTATAACTATTGTATTGAC+TGG + chr5_2:8596372-8596391 Msa0754890:intron 25.0%
! GTAAAACTGGATACTATTAT+GGG + chr5_2:8596708-8596727 Msa0754890:three_prime_UTR 25.0%
! TAAAACTGGATACTATTATG+GGG + chr5_2:8596709-8596728 Msa0754890:three_prime_UTR 25.0%
!! TTTTTCCTTCATGAATTAGA+AGG + chr5_2:8596733-8596752 Msa0754890:three_prime_UTR 25.0%
! AACAAACAAACAAAAAGCTA+TGG + chr5_2:8594516-8594535 Msa0754890:exon 25.0%
! ATTCAATTCTCTTAATTCGT+CGG + chr5_2:8594720-8594739 Msa0754890:intron 25.0%
!! TTTATGACCGGAATAATTTT+TGG + chr5_2:8594804-8594823 Msa0754890:intron 25.0%
!! AATATAATGAAAGCATACCT+TGG - chr5_2:8595354-8595373 None:intergenic 25.0%
! GTATGCTTTCATTATATTTG+TGG + chr5_2:8595356-8595375 Msa0754890:intron 25.0%
!!! TTTGTCAAAGTTTGATAATG+TGG + chr5_2:8595408-8595427 Msa0754890:intron 25.0%
!!! CTAAATTGCTAATTGTTTTG+TGG + chr5_2:8595494-8595513 Msa0754890:intron 25.0%
! TTATACCTTATCTTCATCAA+AGG + chr5_2:8595761-8595780 Msa0754890:intron 25.0%
! TATACCTTATCTTCATCAAA+GGG + chr5_2:8595762-8595781 Msa0754890:intron 25.0%
! TAATGCTATAAGGTTGTTTA+CGG + chr5_2:8596103-8596122 Msa0754890:intron 25.0%
!! TACTTTTGCAGTTGTATTTT+GGG + chr5_2:8596137-8596156 Msa0754890:intron 25.0%
! AACTGAAAGAGAAATCTAAA+AGG - chr5_2:8596328-8596347 None:intergenic 25.0%
! GTCAATACAATAGTTATAAG+AGG - chr5_2:8596372-8596391 None:intergenic 25.0%
!! CTTATAACTATTGTATTGAC+TGG + chr5_2:8596372-8596391 Msa0754890:intron 25.0%
! GTAAAACTGGATACTATTAT+GGG + chr5_2:8596708-8596727 Msa0754890:three_prime_UTR 25.0%
! TAAAACTGGATACTATTATG+GGG + chr5_2:8596709-8596728 Msa0754890:three_prime_UTR 25.0%
!! TTTTTCCTTCATGAATTAGA+AGG + chr5_2:8596733-8596752 Msa0754890:three_prime_UTR 25.0%
ACCAGAGTTAAATTTATGAC+CGG + chr5_2:8594792-8594811 Msa0754890:intron 30.0%
AAGAACCAAAAGCTACAAAA+AGG - chr5_2:8595174-8595193 None:intergenic 30.0%
TATTGGACCCTTGATTAATT+CGG + chr5_2:8595314-8595333 Msa0754890:CDS 30.0%
TGAATAGCCGAATTAATCAA+GGG - chr5_2:8595324-8595343 None:intergenic 30.0%
TTGAATAGCCGAATTAATCA+AGG - chr5_2:8595325-8595344 None:intergenic 30.0%
! TCATTATATTTGTGGTTTGC+TGG + chr5_2:8595364-8595383 Msa0754890:intron 30.0%
! TCCACTAGAATGTTCTATTT+TGG + chr5_2:8595586-8595605 Msa0754890:intron 30.0%
ACCAAAATAGAACATTCTAG+TGG - chr5_2:8595590-8595609 None:intergenic 30.0%
AAGGAAAACTAAAAACCAAG+GGG - chr5_2:8595654-8595673 None:intergenic 30.0%
CAAGGAAAACTAAAAACCAA+GGG - chr5_2:8595655-8595674 None:intergenic 30.0%
ACAAGGAAAACTAAAAACCA+AGG - chr5_2:8595656-8595675 None:intergenic 30.0%
!!! GTTTTTAGTTTTCCTTGTGT+TGG + chr5_2:8595658-8595677 Msa0754890:intron 30.0%
ATACCTTATCTTCATCAAAG+GGG + chr5_2:8595763-8595782 Msa0754890:intron 30.0%
CAAAATACAACTGCAAAAGT+AGG - chr5_2:8596138-8596157 None:intergenic 30.0%
!! CTACTTTTGCAGTTGTATTT+TGG + chr5_2:8596136-8596155 Msa0754890:intron 30.0%
! ATTTGGTTGCAATTTTTGTC+CGG + chr5_2:8596266-8596285 Msa0754890:CDS 30.0%
TTACAATGATGAGTAGAATC+CGG - chr5_2:8596288-8596307 None:intergenic 30.0%
GAAAGAGAAATCTAAAAGGA+TGG - chr5_2:8596324-8596343 None:intergenic 30.0%
AGTTGAATAATTCAGACAAG+AGG + chr5_2:8596410-8596429 Msa0754890:intron 30.0%
GTTGAATAATTCAGACAAGA+GGG + chr5_2:8596411-8596430 Msa0754890:intron 30.0%
AAGAGTCAAACAAGTTTGAT+TGG - chr5_2:8596483-8596502 None:intergenic 30.0%
TACTATCATCCAAAGATTAC+AGG - chr5_2:8596508-8596527 None:intergenic 30.0%
GGCCCTATCTTAAAAAATAA+TGG - chr5_2:8596666-8596685 None:intergenic 30.0%
GGTAAAACTGGATACTATTA+TGG + chr5_2:8596707-8596726 Msa0754890:three_prime_UTR 30.0%
GAATTCCTTCTAATTCATGA+AGG - chr5_2:8596741-8596760 None:intergenic 30.0%
TAGAAGGAATTCTTGTAGTT+TGG + chr5_2:8596749-8596768 Msa0754890:three_prime_UTR 30.0%
ACCAGAGTTAAATTTATGAC+CGG + chr5_2:8594792-8594811 Msa0754890:intron 30.0%
AAGAACCAAAAGCTACAAAA+AGG - chr5_2:8595174-8595193 None:intergenic 30.0%
TATTGGACCCTTGATTAATT+CGG + chr5_2:8595314-8595333 Msa0754890:CDS 30.0%
TGAATAGCCGAATTAATCAA+GGG - chr5_2:8595324-8595343 None:intergenic 30.0%
TTGAATAGCCGAATTAATCA+AGG - chr5_2:8595325-8595344 None:intergenic 30.0%
! TCATTATATTTGTGGTTTGC+TGG + chr5_2:8595364-8595383 Msa0754890:intron 30.0%
! TCCACTAGAATGTTCTATTT+TGG + chr5_2:8595586-8595605 Msa0754890:intron 30.0%
ACCAAAATAGAACATTCTAG+TGG - chr5_2:8595590-8595609 None:intergenic 30.0%
AAGGAAAACTAAAAACCAAG+GGG - chr5_2:8595654-8595673 None:intergenic 30.0%
CAAGGAAAACTAAAAACCAA+GGG - chr5_2:8595655-8595674 None:intergenic 30.0%
ACAAGGAAAACTAAAAACCA+AGG - chr5_2:8595656-8595675 None:intergenic 30.0%
!!! GTTTTTAGTTTTCCTTGTGT+TGG + chr5_2:8595658-8595677 Msa0754890:intron 30.0%
ATACCTTATCTTCATCAAAG+GGG + chr5_2:8595763-8595782 Msa0754890:intron 30.0%
CAAAATACAACTGCAAAAGT+AGG - chr5_2:8596138-8596157 None:intergenic 30.0%
!! CTACTTTTGCAGTTGTATTT+TGG + chr5_2:8596136-8596155 Msa0754890:intron 30.0%
! ATTTGGTTGCAATTTTTGTC+CGG + chr5_2:8596266-8596285 Msa0754890:CDS 30.0%
TTACAATGATGAGTAGAATC+CGG - chr5_2:8596288-8596307 None:intergenic 30.0%
GAAAGAGAAATCTAAAAGGA+TGG - chr5_2:8596324-8596343 None:intergenic 30.0%
AGTTGAATAATTCAGACAAG+AGG + chr5_2:8596410-8596429 Msa0754890:intron 30.0%
GTTGAATAATTCAGACAAGA+GGG + chr5_2:8596411-8596430 Msa0754890:intron 30.0%
AAGAGTCAAACAAGTTTGAT+TGG - chr5_2:8596483-8596502 None:intergenic 30.0%
TACTATCATCCAAAGATTAC+AGG - chr5_2:8596508-8596527 None:intergenic 30.0%
GGCCCTATCTTAAAAAATAA+TGG - chr5_2:8596666-8596685 None:intergenic 30.0%
GGTAAAACTGGATACTATTA+TGG + chr5_2:8596707-8596726 Msa0754890:three_prime_UTR 30.0%
GAATTCCTTCTAATTCATGA+AGG - chr5_2:8596741-8596760 None:intergenic 30.0%
TAGAAGGAATTCTTGTAGTT+TGG + chr5_2:8596749-8596768 Msa0754890:three_prime_UTR 30.0%
!! AGAGTATTGAAATTCCATCG+AGG - chr5_2:8594571-8594590 None:intergenic 35.0%
!!! TCTTAATTCGTCGGTTTTCT+AGG + chr5_2:8594729-8594748 Msa0754890:intron 35.0%
!!! CTTAATTCGTCGGTTTTCTA+GGG + chr5_2:8594730-8594749 Msa0754890:intron 35.0%
TCCGGTCATAAATTTAACTC+TGG - chr5_2:8594796-8594815 None:intergenic 35.0%
AGCGTGACCAAAAATTATTC+CGG - chr5_2:8594814-8594833 None:intergenic 35.0%
GAAATCCATACCTCTTCAAA+AGG - chr5_2:8595147-8595166 None:intergenic 35.0%
! CTGTTCCTTTTTGTAGCTTT+TGG + chr5_2:8595166-8595185 Msa0754890:intron 35.0%
!!! GTAGCTTTTGGTTCTTTTCA+TGG + chr5_2:8595178-8595197 Msa0754890:intron 35.0%
! AAAGAGGTTGACTTTGTTGA+TGG + chr5_2:8595266-8595285 Msa0754890:CDS 35.0%
AGGAAAACTAAAAACCAAGG+GGG - chr5_2:8595653-8595672 None:intergenic 35.0%
!!! TTTTAGGGTGTGAAAAGAGA+GGG - chr5_2:8595691-8595710 None:intergenic 35.0%
!!! TTTTTAGGGTGTGAAAAGAG+AGG - chr5_2:8595692-8595711 None:intergenic 35.0%
TACCTTATCTTCATCAAAGG+GGG + chr5_2:8595764-8595783 Msa0754890:intron 35.0%
AAATGAACTGAAGATGATGC+TGG - chr5_2:8595859-8595878 None:intergenic 35.0%
AAAGTGCAACCACATAAGAA+TGG - chr5_2:8595982-8596001 None:intergenic 35.0%
!! TTCCTGAGTTCTTACTTTTG+TGG + chr5_2:8596056-8596075 Msa0754890:intron 35.0%
TTCCACAAAAGTAAGAACTC+AGG - chr5_2:8596061-8596080 None:intergenic 35.0%
CACACAAGAAATAGTTGAGA+AGG + chr5_2:8596192-8596211 Msa0754890:CDS 35.0%
CAAATCAGTAAACAAGGTCA+GGG - chr5_2:8596251-8596270 None:intergenic 35.0%
TGCAACCAAATCAGTAAACA+AGG - chr5_2:8596257-8596276 None:intergenic 35.0%
!! AGAGTATTGAAATTCCATCG+AGG - chr5_2:8594571-8594590 None:intergenic 35.0%
!!! TCTTAATTCGTCGGTTTTCT+AGG + chr5_2:8594729-8594748 Msa0754890:intron 35.0%
!!! CTTAATTCGTCGGTTTTCTA+GGG + chr5_2:8594730-8594749 Msa0754890:intron 35.0%
TCCGGTCATAAATTTAACTC+TGG - chr5_2:8594796-8594815 None:intergenic 35.0%
AGCGTGACCAAAAATTATTC+CGG - chr5_2:8594814-8594833 None:intergenic 35.0%
GAAATCCATACCTCTTCAAA+AGG - chr5_2:8595147-8595166 None:intergenic 35.0%
! CTGTTCCTTTTTGTAGCTTT+TGG + chr5_2:8595166-8595185 Msa0754890:intron 35.0%
!!! GTAGCTTTTGGTTCTTTTCA+TGG + chr5_2:8595178-8595197 Msa0754890:intron 35.0%
! AAAGAGGTTGACTTTGTTGA+TGG + chr5_2:8595266-8595285 Msa0754890:CDS 35.0%
AGGAAAACTAAAAACCAAGG+GGG - chr5_2:8595653-8595672 None:intergenic 35.0%
!!! TTTTAGGGTGTGAAAAGAGA+GGG - chr5_2:8595691-8595710 None:intergenic 35.0%
!!! TTTTTAGGGTGTGAAAAGAG+AGG - chr5_2:8595692-8595711 None:intergenic 35.0%
TACCTTATCTTCATCAAAGG+GGG + chr5_2:8595764-8595783 Msa0754890:intron 35.0%
AAATGAACTGAAGATGATGC+TGG - chr5_2:8595859-8595878 None:intergenic 35.0%
AAAGTGCAACCACATAAGAA+TGG - chr5_2:8595982-8596001 None:intergenic 35.0%
!! TTCCTGAGTTCTTACTTTTG+TGG + chr5_2:8596056-8596075 Msa0754890:intron 35.0%
TTCCACAAAAGTAAGAACTC+AGG - chr5_2:8596061-8596080 None:intergenic 35.0%
CACACAAGAAATAGTTGAGA+AGG + chr5_2:8596192-8596211 Msa0754890:CDS 35.0%
CAAATCAGTAAACAAGGTCA+GGG - chr5_2:8596251-8596270 None:intergenic 35.0%
TGCAACCAAATCAGTAAACA+AGG - chr5_2:8596257-8596276 None:intergenic 35.0%
! TTTGAGATGATTCTGAACGC+GGG - chr5_2:8594617-8594636 None:intergenic 40.0%
! GTTTGAGATGATTCTGAACG+CGG - chr5_2:8594618-8594637 None:intergenic 40.0%
CGTTCAGAATCATCTCAAAC+AGG + chr5_2:8594618-8594637 Msa0754890:CDS 40.0%
GAATACCACCAATGTTGAGA+AGG - chr5_2:8595074-8595093 None:intergenic 40.0%
ATCCATACCTCTTCAAAAGG+AGG - chr5_2:8595144-8595163 None:intergenic 40.0%
TTTATGGTATGCAGCGAAAG+AGG + chr5_2:8595250-8595269 Msa0754890:intron 40.0%
! ATGTTTCAGGGTGCTTCTAT+TGG + chr5_2:8595297-8595316 Msa0754890:CDS 40.0%
TGTGGTCATTGAATCTCACA+AGG + chr5_2:8595426-8595445 Msa0754890:intron 40.0%
GTGGTCATTGAATCTCACAA+GGG + chr5_2:8595427-8595446 Msa0754890:intron 40.0%
TTCCCCCTTTGATGAAGATA+AGG - chr5_2:8595769-8595788 None:intergenic 40.0%
ATCTTCATCAAAGGGGGAAA+AGG + chr5_2:8595770-8595789 Msa0754890:intron 40.0%
TGAAGATGATGCTGGAACAA+TGG - chr5_2:8595851-8595870 None:intergenic 40.0%
AATGGCTCTCGTTAAGTTTG+AGG + chr5_2:8596025-8596044 Msa0754890:CDS 40.0%
!! GCAGTTGTATTTTGGGCTTT+TGG + chr5_2:8596144-8596163 Msa0754890:intron 40.0%
!!! TTTTGGGCTTTTGGTGTTTG+TGG + chr5_2:8596153-8596172 Msa0754890:CDS 40.0%
!!! TTTGGGCTTTTGGTGTTTGT+GGG + chr5_2:8596154-8596173 Msa0754890:CDS 40.0%
! ATAGTTGAGAAGGCACACTT+TGG + chr5_2:8596202-8596221 Msa0754890:CDS 40.0%
CCAAATCAGTAAACAAGGTC+AGG - chr5_2:8596252-8596271 None:intergenic 40.0%
! CCTGACCTTGTTTACTGATT+TGG + chr5_2:8596249-8596268 Msa0754890:CDS 40.0%
GAATAATTCAGACAAGAGGG+CGG + chr5_2:8596414-8596433 Msa0754890:CDS 40.0%
GACTCTTCTCCTGTAATCTT+TGG + chr5_2:8596496-8596515 Msa0754890:three_prime_UTR 40.0%
AACATGACTAACTGCACAGT+GGG - chr5_2:8596581-8596600 None:intergenic 40.0%
AAACATGACTAACTGCACAG+TGG - chr5_2:8596582-8596601 None:intergenic 40.0%
ATTTGAAAGAGACGGGTAGA+TGG - chr5_2:8594412-8594431 None:intergenic 40.0%
! TTTGAGATGATTCTGAACGC+GGG - chr5_2:8594617-8594636 None:intergenic 40.0%
! GTTTGAGATGATTCTGAACG+CGG - chr5_2:8594618-8594637 None:intergenic 40.0%
CGTTCAGAATCATCTCAAAC+AGG + chr5_2:8594618-8594637 Msa0754890:CDS 40.0%
GAATACCACCAATGTTGAGA+AGG - chr5_2:8595074-8595093 None:intergenic 40.0%
ATCCATACCTCTTCAAAAGG+AGG - chr5_2:8595144-8595163 None:intergenic 40.0%
TTTATGGTATGCAGCGAAAG+AGG + chr5_2:8595250-8595269 Msa0754890:intron 40.0%
! ATGTTTCAGGGTGCTTCTAT+TGG + chr5_2:8595297-8595316 Msa0754890:CDS 40.0%
TGTGGTCATTGAATCTCACA+AGG + chr5_2:8595426-8595445 Msa0754890:intron 40.0%
GTGGTCATTGAATCTCACAA+GGG + chr5_2:8595427-8595446 Msa0754890:intron 40.0%
TTCCCCCTTTGATGAAGATA+AGG - chr5_2:8595769-8595788 None:intergenic 40.0%
ATCTTCATCAAAGGGGGAAA+AGG + chr5_2:8595770-8595789 Msa0754890:intron 40.0%
TGAAGATGATGCTGGAACAA+TGG - chr5_2:8595851-8595870 None:intergenic 40.0%
AATGGCTCTCGTTAAGTTTG+AGG + chr5_2:8596025-8596044 Msa0754890:CDS 40.0%
!! GCAGTTGTATTTTGGGCTTT+TGG + chr5_2:8596144-8596163 Msa0754890:intron 40.0%
!!! TTTTGGGCTTTTGGTGTTTG+TGG + chr5_2:8596153-8596172 Msa0754890:CDS 40.0%
!!! TTTGGGCTTTTGGTGTTTGT+GGG + chr5_2:8596154-8596173 Msa0754890:CDS 40.0%
! ATAGTTGAGAAGGCACACTT+TGG + chr5_2:8596202-8596221 Msa0754890:CDS 40.0%
CCAAATCAGTAAACAAGGTC+AGG - chr5_2:8596252-8596271 None:intergenic 40.0%
! CCTGACCTTGTTTACTGATT+TGG + chr5_2:8596249-8596268 Msa0754890:CDS 40.0%
GAATAATTCAGACAAGAGGG+CGG + chr5_2:8596414-8596433 Msa0754890:CDS 40.0%
GACTCTTCTCCTGTAATCTT+TGG + chr5_2:8596496-8596515 Msa0754890:three_prime_UTR 40.0%
AACATGACTAACTGCACAGT+GGG - chr5_2:8596581-8596600 None:intergenic 40.0%
AAACATGACTAACTGCACAG+TGG - chr5_2:8596582-8596601 None:intergenic 40.0%
TCTTCGATTCAACACCTCGA+TGG + chr5_2:8594554-8594573 Msa0754890:CDS 45.0%
TTGAGATGATTCTGAACGCG+GGG - chr5_2:8594616-8594635 None:intergenic 45.0%
TTTGACCTTGTGTTTCGCTG+TGG + chr5_2:8595017-8595036 Msa0754890:CDS 45.0%
CAATGTTGAGAAGGACATGG+AGG - chr5_2:8595065-8595084 None:intergenic 45.0%
CTCCATGTCCTTCTCAACAT+TGG + chr5_2:8595063-8595082 Msa0754890:CDS 45.0%
CACCAATGTTGAGAAGGACA+TGG - chr5_2:8595068-8595087 None:intergenic 45.0%
CATGTCCTTCTCAACATTGG+TGG + chr5_2:8595066-8595085 Msa0754890:CDS 45.0%
TCTTACCACAATTGCGTGTG+TGG + chr5_2:8595092-8595111 Msa0754890:CDS 45.0%
CTTACCACAATTGCGTGTGT+GGG + chr5_2:8595093-8595112 Msa0754890:CDS 45.0%
AATTCCCACACACGCAATTG+TGG - chr5_2:8595100-8595119 None:intergenic 45.0%
CGTGTGTGGGAATTAGTGTT+TGG + chr5_2:8595106-8595125 Msa0754890:CDS 45.0%
!! CTCAACACCTCCTTTTGAAG+AGG + chr5_2:8595134-8595153 Msa0754890:CDS 45.0%
!! CACCTCCTTTTGAAGAGGTA+TGG + chr5_2:8595139-8595158 Msa0754890:intron 45.0%
!! TTTGTGGTTTGCTGGTGCAT+TGG + chr5_2:8595372-8595391 Msa0754890:intron 45.0%
!! TTGTGGTTTGCTGGTGCATT+GGG + chr5_2:8595373-8595392 Msa0754890:intron 45.0%
TTTGTGTGAAGCCAACCAAG+TGG + chr5_2:8595525-8595544 Msa0754890:intron 45.0%
TTCATCAAAGGGGGAAAAGG+TGG + chr5_2:8595773-8595792 Msa0754890:intron 45.0%
TCATCAAAGGGGGAAAAGGT+GGG + chr5_2:8595774-8595793 Msa0754890:intron 45.0%
TTCATTTGTCGCAACTGCCT+TGG + chr5_2:8595872-8595891 Msa0754890:CDS 45.0%
!! TTGGTGGCTTGGTTTCTTCT+GGG + chr5_2:8595952-8595971 Msa0754890:CDS 45.0%
CTGGGTTGTCCATTCTTATG+TGG + chr5_2:8595970-8595989 Msa0754890:CDS 45.0%
CACTTTGCTTCTGCCATCTT+TGG + chr5_2:8595996-8596015 Msa0754890:CDS 45.0%
TTTGCTTCTGCCATCTTTGG+AGG + chr5_2:8595999-8596018 Msa0754890:CDS 45.0%
! TGCCATCTTTGGAGGTTCAA+TGG + chr5_2:8596007-8596026 Msa0754890:CDS 45.0%
AGCCATTGAACCTCCAAAGA+TGG - chr5_2:8596012-8596031 None:intergenic 45.0%
GTGGGAACAAGTTCAAGACA+TGG - chr5_2:8596563-8596582 None:intergenic 45.0%
TCTTCGATTCAACACCTCGA+TGG + chr5_2:8594554-8594573 Msa0754890:CDS 45.0%
TTGAGATGATTCTGAACGCG+GGG - chr5_2:8594616-8594635 None:intergenic 45.0%
TTTGACCTTGTGTTTCGCTG+TGG + chr5_2:8595017-8595036 Msa0754890:CDS 45.0%
CAATGTTGAGAAGGACATGG+AGG - chr5_2:8595065-8595084 None:intergenic 45.0%
CTCCATGTCCTTCTCAACAT+TGG + chr5_2:8595063-8595082 Msa0754890:CDS 45.0%
CACCAATGTTGAGAAGGACA+TGG - chr5_2:8595068-8595087 None:intergenic 45.0%
CATGTCCTTCTCAACATTGG+TGG + chr5_2:8595066-8595085 Msa0754890:CDS 45.0%
TCTTACCACAATTGCGTGTG+TGG + chr5_2:8595092-8595111 Msa0754890:CDS 45.0%
CTTACCACAATTGCGTGTGT+GGG + chr5_2:8595093-8595112 Msa0754890:CDS 45.0%
AATTCCCACACACGCAATTG+TGG - chr5_2:8595100-8595119 None:intergenic 45.0%
CGTGTGTGGGAATTAGTGTT+TGG + chr5_2:8595106-8595125 Msa0754890:CDS 45.0%
!! CTCAACACCTCCTTTTGAAG+AGG + chr5_2:8595134-8595153 Msa0754890:CDS 45.0%
!! CACCTCCTTTTGAAGAGGTA+TGG + chr5_2:8595139-8595158 Msa0754890:intron 45.0%
!! TTTGTGGTTTGCTGGTGCAT+TGG + chr5_2:8595372-8595391 Msa0754890:intron 45.0%
!! TTGTGGTTTGCTGGTGCATT+GGG + chr5_2:8595373-8595392 Msa0754890:intron 45.0%
TTTGTGTGAAGCCAACCAAG+TGG + chr5_2:8595525-8595544 Msa0754890:intron 45.0%
TTCATCAAAGGGGGAAAAGG+TGG + chr5_2:8595773-8595792 Msa0754890:intron 45.0%
TCATCAAAGGGGGAAAAGGT+GGG + chr5_2:8595774-8595793 Msa0754890:intron 45.0%
TTCATTTGTCGCAACTGCCT+TGG + chr5_2:8595872-8595891 Msa0754890:CDS 45.0%
!! TTGGTGGCTTGGTTTCTTCT+GGG + chr5_2:8595952-8595971 Msa0754890:CDS 45.0%
CTGGGTTGTCCATTCTTATG+TGG + chr5_2:8595970-8595989 Msa0754890:CDS 45.0%
CACTTTGCTTCTGCCATCTT+TGG + chr5_2:8595996-8596015 Msa0754890:CDS 45.0%
TTTGCTTCTGCCATCTTTGG+AGG + chr5_2:8595999-8596018 Msa0754890:CDS 45.0%
! TGCCATCTTTGGAGGTTCAA+TGG + chr5_2:8596007-8596026 Msa0754890:CDS 45.0%
AGCCATTGAACCTCCAAAGA+TGG - chr5_2:8596012-8596031 None:intergenic 45.0%
GTGGGAACAAGTTCAAGACA+TGG - chr5_2:8596563-8596582 None:intergenic 45.0%
!! TAATATAAATATATAAAGTT+TGG + chr5_2:8594451-8594470 Msa0754890:five_prime_UTR 5.0%
!! TAATATAAATATATAAAGTT+TGG + chr5_2:8594451-8594470 Msa0754890:five_prime_UTR 5.0%
!! GTTGACTTTGTTGATGGCCG+CGG + chr5_2:8595272-8595291 Msa0754890:CDS 50.0%
CGGCTATTCAAGTCGATCCA+AGG + chr5_2:8595334-8595353 Msa0754890:CDS 50.0%
!! TGTGGTTTGCTGGTGCATTG+GGG + chr5_2:8595374-8595393 Msa0754890:intron 50.0%
GCGGGTGGCTTAGCTAATAT+CGG + chr5_2:8595547-8595566 Msa0754890:intron 50.0%
CATCAAAGGGGGAAAAGGTG+GGG + chr5_2:8595775-8595794 Msa0754890:intron 50.0%
! CTTGGCTTTCGGGTGTTTCT+CGG + chr5_2:8595890-8595909 Msa0754890:CDS 50.0%
! TTGGCTTTCGGGTGTTTCTC+GGG + chr5_2:8595891-8595910 Msa0754890:CDS 50.0%
! AGCTTTGGTTGCTAAGCGCA+GGG + chr5_2:8595917-8595936 Msa0754890:CDS 50.0%
AAACCAAGCCACCAAGGTAG+AGG - chr5_2:8595947-8595966 None:intergenic 50.0%
CAGAAGAAACCAAGCCACCA+AGG - chr5_2:8595953-8595972 None:intergenic 50.0%
!! CTTGGTGGCTTGGTTTCTTC+TGG + chr5_2:8595951-8595970 Msa0754890:CDS 50.0%
TAATTCAGACAAGAGGGCGG+AGG + chr5_2:8596417-8596436 Msa0754890:CDS 50.0%
!! GTTGACTTTGTTGATGGCCG+CGG + chr5_2:8595272-8595291 Msa0754890:CDS 50.0%
CGGCTATTCAAGTCGATCCA+AGG + chr5_2:8595334-8595353 Msa0754890:CDS 50.0%
!! TGTGGTTTGCTGGTGCATTG+GGG + chr5_2:8595374-8595393 Msa0754890:intron 50.0%
GCGGGTGGCTTAGCTAATAT+CGG + chr5_2:8595547-8595566 Msa0754890:intron 50.0%
CATCAAAGGGGGAAAAGGTG+GGG + chr5_2:8595775-8595794 Msa0754890:intron 50.0%
! CTTGGCTTTCGGGTGTTTCT+CGG + chr5_2:8595890-8595909 Msa0754890:CDS 50.0%
! TTGGCTTTCGGGTGTTTCTC+GGG + chr5_2:8595891-8595910 Msa0754890:CDS 50.0%
! AGCTTTGGTTGCTAAGCGCA+GGG + chr5_2:8595917-8595936 Msa0754890:CDS 50.0%
AAACCAAGCCACCAAGGTAG+AGG - chr5_2:8595947-8595966 None:intergenic 50.0%
CAGAAGAAACCAAGCCACCA+AGG - chr5_2:8595953-8595972 None:intergenic 50.0%
!! CTTGGTGGCTTGGTTTCTTC+TGG + chr5_2:8595951-8595970 Msa0754890:CDS 50.0%
TAATTCAGACAAGAGGGCGG+AGG + chr5_2:8596417-8596436 Msa0754890:CDS 50.0%
GACCTTGTGTTTCGCTGTGG+TGG + chr5_2:8595020-8595039 Msa0754890:CDS 55.0%
AGCCACCACAGCGAAACACA+AGG - chr5_2:8595025-8595044 None:intergenic 55.0%
ATGGCCGCGGCAATGTTTCA+GGG + chr5_2:8595285-8595304 Msa0754890:CDS 55.0%
AGCACCCTGAAACATTGCCG+CGG - chr5_2:8595292-8595311 None:intergenic 55.0%
TGCTGGTGCATTGGGGTCTT+TGG + chr5_2:8595381-8595400 Msa0754890:intron 55.0%
GTGTGAAGCCAACCAAGTGG+CGG + chr5_2:8595528-8595547 Msa0754890:intron 55.0%
TGTGAAGCCAACCAAGTGGC+GGG + chr5_2:8595529-8595548 Msa0754890:intron 55.0%
TCAGCTGTTCAGTTCCCCCT+TGG + chr5_2:8595636-8595655 Msa0754890:intron 55.0%
GAGGGCTAAACGCCAACACA+AGG - chr5_2:8595673-8595692 None:intergenic 55.0%
! AGGGGGAAAAGGTGGGGTTT+TGG + chr5_2:8595781-8595800 Msa0754890:intron 55.0%
! GTCGCAACTGCCTTGGCTTT+CGG + chr5_2:8595879-8595898 Msa0754890:CDS 55.0%
! TCGCAACTGCCTTGGCTTTC+GGG + chr5_2:8595880-8595899 Msa0754890:CDS 55.0%
CGAGAAACACCCGAAAGCCA+AGG - chr5_2:8595892-8595911 None:intergenic 55.0%
GTGTTTCTCGGGAGCAGCTT+TGG + chr5_2:8595902-8595921 Msa0754890:CDS 55.0%
! CAGCTTTGGTTGCTAAGCGC+AGG + chr5_2:8595916-8595935 Msa0754890:CDS 55.0%
!! AGGGAGTACCTCTACCTTGG+TGG + chr5_2:8595936-8595955 Msa0754890:CDS 55.0%
! GTACCTCTACCTTGGTGGCT+TGG + chr5_2:8595941-8595960 Msa0754890:CDS 55.0%
GACCTTGTGTTTCGCTGTGG+TGG + chr5_2:8595020-8595039 Msa0754890:CDS 55.0%
AGCCACCACAGCGAAACACA+AGG - chr5_2:8595025-8595044 None:intergenic 55.0%
ATGGCCGCGGCAATGTTTCA+GGG + chr5_2:8595285-8595304 Msa0754890:CDS 55.0%
AGCACCCTGAAACATTGCCG+CGG - chr5_2:8595292-8595311 None:intergenic 55.0%
TGCTGGTGCATTGGGGTCTT+TGG + chr5_2:8595381-8595400 Msa0754890:intron 55.0%
GTGTGAAGCCAACCAAGTGG+CGG + chr5_2:8595528-8595547 Msa0754890:intron 55.0%
TGTGAAGCCAACCAAGTGGC+GGG + chr5_2:8595529-8595548 Msa0754890:intron 55.0%
TCAGCTGTTCAGTTCCCCCT+TGG + chr5_2:8595636-8595655 Msa0754890:intron 55.0%
GAGGGCTAAACGCCAACACA+AGG - chr5_2:8595673-8595692 None:intergenic 55.0%
! AGGGGGAAAAGGTGGGGTTT+TGG + chr5_2:8595781-8595800 Msa0754890:intron 55.0%
! GTCGCAACTGCCTTGGCTTT+CGG + chr5_2:8595879-8595898 Msa0754890:CDS 55.0%
! TCGCAACTGCCTTGGCTTTC+GGG + chr5_2:8595880-8595899 Msa0754890:CDS 55.0%
CGAGAAACACCCGAAAGCCA+AGG - chr5_2:8595892-8595911 None:intergenic 55.0%
GTGTTTCTCGGGAGCAGCTT+TGG + chr5_2:8595902-8595921 Msa0754890:CDS 55.0%
! CAGCTTTGGTTGCTAAGCGC+AGG + chr5_2:8595916-8595935 Msa0754890:CDS 55.0%
!! AGGGAGTACCTCTACCTTGG+TGG + chr5_2:8595936-8595955 Msa0754890:CDS 55.0%
! GTACCTCTACCTTGGTGGCT+TGG + chr5_2:8595941-8595960 Msa0754890:CDS 55.0%
GCTGTGGTGGCTGCTTCTGT+TGG + chr5_2:8595033-8595052 Msa0754890:CDS 60.0%
GATGGCCGCGGCAATGTTTC+AGG + chr5_2:8595284-8595303 Msa0754890:CDS 60.0%
TAAGCCACCCGCCACTTGGT+TGG - chr5_2:8595539-8595558 None:intergenic 60.0%
TAGCTAAGCCACCCGCCACT+TGG - chr5_2:8595543-8595562 None:intergenic 60.0%
!! CGCAGGGAGTACCTCTACCT+TGG + chr5_2:8595933-8595952 Msa0754890:CDS 60.0%
TTCAGACAAGAGGGCGGAGG+AGG + chr5_2:8596420-8596439 Msa0754890:CDS 60.0%
GCTGTGGTGGCTGCTTCTGT+TGG + chr5_2:8595033-8595052 Msa0754890:CDS 60.0%
GATGGCCGCGGCAATGTTTC+AGG + chr5_2:8595284-8595303 Msa0754890:CDS 60.0%
TAAGCCACCCGCCACTTGGT+TGG - chr5_2:8595539-8595558 None:intergenic 60.0%
TAGCTAAGCCACCCGCCACT+TGG - chr5_2:8595543-8595562 None:intergenic 60.0%
!! CGCAGGGAGTACCTCTACCT+TGG + chr5_2:8595933-8595952 Msa0754890:CDS 60.0%
TTCAGACAAGAGGGCGGAGG+AGG + chr5_2:8596420-8596439 Msa0754890:CDS 60.0%
! GAAGCCAACCAAGTGGCGGG+TGG + chr5_2:8595532-8595551 Msa0754890:intron 65.0%
! GAAGCCAACCAAGTGGCGGG+TGG + chr5_2:8595532-8595551 Msa0754890:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 8594411 8596848 8594411 ID=Msa0754890;Name=Msa0754890
chr5_2 mRNA 8594411 8596848 8594411 ID=Msa0754890-mRNA-1;Parent=Msa0754890;Name=Msa0754890-mRNA-1;_AED=0.08;_eAED=0.08;_QI=124|1|1|1|1|1|6|377|247
chr5_2 exon 8594411 8594639 8594411 ID=Msa0754890-mRNA-1:exon:3925;Parent=Msa0754890-mRNA-1
chr5_2 exon 8595012 8595155 8595012 ID=Msa0754890-mRNA-1:exon:3926;Parent=Msa0754890-mRNA-1
chr5_2 exon 8595264 8595355 8595264 ID=Msa0754890-mRNA-1:exon:3927;Parent=Msa0754890-mRNA-1
chr5_2 exon 8595860 8596046 8595860 ID=Msa0754890-mRNA-1:exon:3928;Parent=Msa0754890-mRNA-1
chr5_2 exon 8596148 8596303 8596148 ID=Msa0754890-mRNA-1:exon:3929;Parent=Msa0754890-mRNA-1
chr5_2 exon 8596412 8596848 8596412 ID=Msa0754890-mRNA-1:exon:3930;Parent=Msa0754890-mRNA-1
chr5_2 five_prime_UTR 8594411 8594534 8594411 ID=Msa0754890-mRNA-1:five_prime_utr;Parent=Msa0754890-mRNA-1
chr5_2 CDS 8594535 8594639 8594535 ID=Msa0754890-mRNA-1:cds;Parent=Msa0754890-mRNA-1
chr5_2 CDS 8595012 8595155 8595012 ID=Msa0754890-mRNA-1:cds;Parent=Msa0754890-mRNA-1
chr5_2 CDS 8595264 8595355 8595264 ID=Msa0754890-mRNA-1:cds;Parent=Msa0754890-mRNA-1
chr5_2 CDS 8595860 8596046 8595860 ID=Msa0754890-mRNA-1:cds;Parent=Msa0754890-mRNA-1
chr5_2 CDS 8596148 8596303 8596148 ID=Msa0754890-mRNA-1:cds;Parent=Msa0754890-mRNA-1
chr5_2 CDS 8596412 8596471 8596412 ID=Msa0754890-mRNA-1:cds;Parent=Msa0754890-mRNA-1
chr5_2 three_prime_UTR 8596472 8596848 8596472 ID=Msa0754890-mRNA-1:three_prime_utr;Parent=Msa0754890-mRNA-1
Gene Sequence

>Msa0754890

ATGGATTCATTCGCTTCGTTCTTCGATTCAACACCTCGATGGAATTTCAATACTCTCAAAAACTTCAATCAGATTTCTCCCCGCGTTCAGAATCATCTCAAACAGGTTTATTTGACCTTGTGTTTCGCTGTGGTGGCTGCTTCTGTTGGAGCTTACCTCCATGTCCTTCTCAACATTGGTGGTATTCTTACCACAATTGCGTGTGTGGGAATTAGTGTTTGGTTACTCTCAACACCTCCTTTTGAAGAGCGAAAGAGGTTGACTTTGTTGATGGCCGCGGCAATGTTTCAGGGTGCTTCTATTGGACCCTTGATTAATTCGGCTATTCAAGTCGATCCAAGCATCATCTTCAGTTCATTTGTCGCAACTGCCTTGGCTTTCGGGTGTTTCTCGGGAGCAGCTTTGGTTGCTAAGCGCAGGGAGTACCTCTACCTTGGTGGCTTGGTTTCTTCTGGGTTGTCCATTCTTATGTGGTTGCACTTTGCTTCTGCCATCTTTGGAGGTTCAATGGCTCTCGTTAAGTTTGAGTTGTATTTTGGGCTTTTGGTGTTTGTGGGTTACATTGTAGTAGACACACAAGAAATAGTTGAGAAGGCACACTTTGGTGATCTCGATTATGTGAAGCATGCCCTGACCTTGTTTACTGATTTGGTTGCAATTTTTGTCCGGATTCTACTCATCATTTTGAATAATTCAGACAAGAGGGCGGAGGAGGAGAAGAAGAAAAAGAAGAGAAGAGAATAA
Protein sequence

>Msa0754890

MDSFASFFDSTPRWNFNTLKNFNQISPRVQNHLKQVYLTLCFAVVAASVGAYLHVLLNIGGILTTIACVGISVWLLSTPPFEERKRLTLLMAAAMFQGASIGPLINSAIQVDPSIIFSSFVATALAFGCFSGAALVAKRREYLYLGGLVSSGLSILMWLHFASAIFGGSMALVKFELYFGLLVFVGYIVVDTQEIVEKAHFGDLDYVKHALTLFTDLVAIFVRILLIILNNSDKRAEEEKKKKKRRE*