Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0796870 | XP_003611383.2 | 92.385 | 499 | 10 | 1 | 1 | 471 | 1 | 499 | 0.0 | 947 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0796870 | sp|Q8W4H1|GAT26_ARATH | 47.184 | 515 | 198 | 13 | 1 | 448 | 1 | 508 | 4.48e-122 | 369 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0796870 | G7JYK7 | 92.385 | 499 | 10 | 1 | 1 | 471 | 1 | 499 | 0.0 | 947 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0796870 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0754900 | Msa0796870 | 0.943672 | 7.882627e-103 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0796870 | MtrunA17_Chr4g0055611 | 57.707 | 532 | 146 | 11 | 1 | 457 | 1 | 528 | 0.0 | 524 |
| Msa0796870 | MtrunA17_Chr5g0399781 | 96.109 | 257 | 9 | 1 | 1 | 257 | 1 | 256 | 0.0 | 517 |
| Msa0796870 | MtrunA17_Chr5g0399791 | 97.297 | 222 | 6 | 0 | 250 | 471 | 33 | 254 | 6.68e-158 | 447 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0796870 | AT4G17570.3 | 47.767 | 515 | 199 | 12 | 1 | 448 | 1 | 512 | 5.66e-128 | 381 |
| Msa0796870 | AT4G17570.1 | 47.184 | 515 | 198 | 13 | 1 | 448 | 1 | 508 | 4.55e-123 | 369 |
| Msa0796870 | AT4G17570.2 | 46.707 | 501 | 197 | 12 | 15 | 448 | 27 | 524 | 8.67e-116 | 350 |
| Msa0796870 | AT5G47140.1 | 45.825 | 491 | 200 | 12 | 1 | 448 | 1 | 468 | 5.53e-112 | 339 |
Find 102 sgRNAs with CRISPR-Local
Find 275 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGTAATGTGTTACTTAA+TGG | 0.115400 | 5_3:-8890985 | None:intergenic |
| AGTCTTTGTGATAATTCTTT+TGG | 0.200744 | 5_3:-8890747 | None:intergenic |
| ATTACAATAATTAATTAAAA+TGG | 0.207776 | 5_3:-8886279 | None:intergenic |
| TATCTTCATCAAAAGCCTTT+TGG | 0.231803 | 5_3:-8888046 | None:intergenic |
| GATTGTCAAGGATTTGAAAT+TGG | 0.267403 | 5_3:+8891093 | Msa0796870:three_prime_UTR |
| AGCTCTCTTTCATTTGATAA+TGG | 0.271694 | 5_3:+8889222 | Msa0796870:CDS |
| CGCCTTTGATATCTCTTTGC+CGG | 0.285823 | 5_3:+8890037 | Msa0796870:CDS |
| TTCAAAGTCTCGCAGTCTTC+AGG | 0.296864 | 5_3:-8890068 | None:intergenic |
| ACCAAATTGTGCGCAGCTTT+CGG | 0.305747 | 5_3:-8888108 | None:intergenic |
| AGTGACGCATATTCTTATTC+TGG | 0.322140 | 5_3:+8889258 | Msa0796870:CDS |
| CATCAGGAGGCAAAGGAAAT+AGG | 0.324121 | 5_3:-8890787 | None:intergenic |
| ATTGATGTATATGTTATAGA+TGG | 0.335555 | 5_3:-8886101 | None:intergenic |
| TCCGAAAGCTGCGCACAATT+TGG | 0.336033 | 5_3:+8888107 | Msa0796870:CDS |
| GACCTGCTCAGTCAGTGGTC+TGG | 0.355510 | 5_3:+8888950 | Msa0796870:CDS |
| AACCACTATAATGTAGTATC+TGG | 0.362580 | 5_3:+8887993 | Msa0796870:CDS |
| ACCTGCTCAGTCAGTGGTCT+GGG | 0.368180 | 5_3:+8888951 | Msa0796870:CDS |
| TTGTTGTTTGTGCAGCCTTA+AGG | 0.373323 | 5_3:+8889950 | Msa0796870:intron |
| ATGAGTTGTCAAAGTCGAAA+TGG | 0.378385 | 5_3:+8890105 | Msa0796870:CDS |
| TAAGAATATGCGTCACTCAT+TGG | 0.378524 | 5_3:-8889252 | None:intergenic |
| AGCAGAAATCAGAACTTTCC+AGG | 0.401146 | 5_3:+8890333 | Msa0796870:CDS |
| AAGAATATGCGTCACTCATT+GGG | 0.411487 | 5_3:-8889251 | None:intergenic |
| TTGCATAGTATTGGCTTCTC+TGG | 0.427042 | 5_3:-8887810 | None:intergenic |
| GCACACCACTTTGGCGCAAT+GGG | 0.430676 | 5_3:+8887784 | Msa0796870:CDS |
| CCACATGCATTGCATAGTAT+TGG | 0.431658 | 5_3:-8887819 | None:intergenic |
| TAGCAAACCTAAAATATGAT+AGG | 0.432361 | 5_3:-8886243 | None:intergenic |
| ATGAGTAATCGATCAAGTTC+AGG | 0.432484 | 5_3:+8888068 | Msa0796870:CDS |
| CCGATGGTCTCTGTCGAGAT+AGG | 0.442024 | 5_3:+8889138 | Msa0796870:CDS |
| TTACACACCTTTACATGCTC+GGG | 0.442559 | 5_3:+8887875 | Msa0796870:CDS |
| CTGCACCCAACTTCATACTT+TGG | 0.442894 | 5_3:+8890914 | Msa0796870:CDS |
| GTCAAGGATTTGAAATTGGA+TGG | 0.445749 | 5_3:+8891097 | Msa0796870:three_prime_UTR |
| TTTCAGCAGCTTCTTGCAAA+AGG | 0.446745 | 5_3:+8890014 | Msa0796870:CDS |
| TCTCTTCACATTTGCAACAT+TGG | 0.446975 | 5_3:-8890301 | None:intergenic |
| CCATTAAGTAACACATTACA+AGG | 0.451212 | 5_3:+8890985 | Msa0796870:exon |
| ATGCATGTGGTTCGCGGTGG+AGG | 0.452122 | 5_3:+8887832 | Msa0796870:CDS |
| GTGAGCTTCTCAACAGAAGA+TGG | 0.452294 | 5_3:-8889030 | None:intergenic |
| AGCAAGTGTGAGCTTGCATC+AGG | 0.455435 | 5_3:-8890803 | None:intergenic |
| TGCAGCCTTAAGGTCATGTT+CGG | 0.457133 | 5_3:+8889960 | Msa0796870:intron |
| AAGAAGTGAACTTGCTCAAA+CGG | 0.458776 | 5_3:+8887964 | Msa0796870:CDS |
| ATTACACACCTTTACATGCT+CGG | 0.466186 | 5_3:+8887874 | Msa0796870:CDS |
| GGCACACCACTTTGGCGCAA+TGG | 0.466586 | 5_3:+8887783 | Msa0796870:intron |
| TGCGGAAAAGAATTATTAGA+AGG | 0.469116 | 5_3:-8890881 | None:intergenic |
| TTGATGATCAAAGGGCTTCA+AGG | 0.472955 | 5_3:+8887913 | Msa0796870:CDS |
| GTTCGGTAGCTCTCAATTCA+AGG | 0.476255 | 5_3:+8889977 | Msa0796870:CDS |
| ACAGATGCTAGTGATCTAAC+AGG | 0.476473 | 5_3:+8888134 | Msa0796870:CDS |
| AAAACAGTAACTAGAATTGA+AGG | 0.479850 | 5_3:-8886125 | None:intergenic |
| TGAGCACCAAAGTATGAAGT+TGG | 0.490384 | 5_3:-8890920 | None:intergenic |
| GAGTAGAATTCTAACCCATC+AGG | 0.493607 | 5_3:-8889823 | None:intergenic |
| TTGCAACAGGCACACCACTT+TGG | 0.494644 | 5_3:+8887775 | Msa0796870:intron |
| TGAGTTGTCAAAGTCGAAAT+GGG | 0.496810 | 5_3:+8890106 | Msa0796870:CDS |
| GATGCTATACCAGCAGATCC+TGG | 0.497891 | 5_3:-8890276 | None:intergenic |
| TCGGATGTTCCAGGATCTGC+TGG | 0.499260 | 5_3:+8890267 | Msa0796870:CDS |
| TGAGAAATGGTTGTGAAAAG+TGG | 0.500096 | 5_3:-8886031 | None:intergenic |
| CGATGCAGAGATGTAAAAGT+AGG | 0.503787 | 5_3:+8890235 | Msa0796870:intron |
| GACATGGAAGTGTTCTCATT+AGG | 0.509357 | 5_3:+8889160 | Msa0796870:CDS |
| ATGGTTGTGAAAAGTGGAAA+TGG | 0.516210 | 5_3:-8886025 | None:intergenic |
| CATAGTATTGGCTTCTCTGG+TGG | 0.517941 | 5_3:-8887807 | None:intergenic |
| AGCTACCGAACATGACCTTA+AGG | 0.523689 | 5_3:-8889965 | None:intergenic |
| CTCCAGATACTACATTATAG+TGG | 0.528306 | 5_3:-8887995 | None:intergenic |
| TTGATGTATATGTTATAGAT+GGG | 0.528977 | 5_3:-8886100 | None:intergenic |
| TGCTGAGCTACTACTAGTGC+TGG | 0.529471 | 5_3:-8890945 | None:intergenic |
| AATGGAAGAGAAAAGAGCAT+TGG | 0.529613 | 5_3:-8886063 | None:intergenic |
| ATTATTGAAGTTTCTTCCTG+TGG | 0.538673 | 5_3:+8889783 | Msa0796870:CDS |
| TTACAACCAGGGATTCCAAA+AGG | 0.539474 | 5_3:+8888031 | Msa0796870:CDS |
| GAGCACCAAAGTATGAAGTT+GGG | 0.542626 | 5_3:-8890919 | None:intergenic |
| TCGTCGCGAGCTACATAACT+AGG | 0.544739 | 5_3:-8889186 | None:intergenic |
| TTCTGAGACATGGGTAAACA+AGG | 0.546162 | 5_3:+8886394 | Msa0796870:exon |
| GTTTCAGCCCGAGCATGTAA+AGG | 0.551747 | 5_3:-8887882 | None:intergenic |
| GGTTCGCGGTGGAGGACAAA+GGG | 0.557202 | 5_3:+8887840 | Msa0796870:CDS |
| GATACTGCTAAACTTCCTGA+TGG | 0.560155 | 5_3:+8889808 | Msa0796870:CDS |
| TGGGAATTTGTACAATCCAA+TGG | 0.563198 | 5_3:-8886081 | None:intergenic |
| TCCCAGACCACTGACTGAGC+AGG | 0.563264 | 5_3:-8888952 | None:intergenic |
| TGGTTCGCGGTGGAGGACAA+AGG | 0.567138 | 5_3:+8887839 | Msa0796870:CDS |
| TTATGAAAGTGAAGCACCGA+TGG | 0.567218 | 5_3:+8889122 | Msa0796870:CDS |
| TTTACATCTTAAATATATGA+CGG | 0.567772 | 5_3:+8891030 | Msa0796870:three_prime_UTR |
| TTTAGGACCTGCTCAGTCAG+TGG | 0.572891 | 5_3:+8888945 | Msa0796870:intron |
| AGTTTAGCAGTATCAACCAC+AGG | 0.576633 | 5_3:-8889799 | None:intergenic |
| GAAAGCTGCGCACAATTTGG+TGG | 0.579311 | 5_3:+8888110 | Msa0796870:CDS |
| CAGAGATGAAGACAATAATG+AGG | 0.584067 | 5_3:+8890720 | Msa0796870:intron |
| CACTTGTAACTCCACAGTGA+TGG | 0.587666 | 5_3:-8886423 | None:intergenic |
| GAGCTTGCATCAGGAGGCAA+AGG | 0.591960 | 5_3:-8890794 | None:intergenic |
| GATGCAGAGATGTAAAAGTA+GGG | 0.597722 | 5_3:+8890236 | Msa0796870:intron |
| GTCTCTGTCGAGATAGGACA+TGG | 0.606101 | 5_3:+8889144 | Msa0796870:CDS |
| ATACTGCTAAACTTCCTGAT+GGG | 0.607368 | 5_3:+8889809 | Msa0796870:CDS |
| TATGCAATGCATGTGGTTCG+CGG | 0.611941 | 5_3:+8887826 | Msa0796870:CDS |
| CACATTACAAGGTTATACTC+TGG | 0.616204 | 5_3:+8890996 | Msa0796870:three_prime_UTR |
| GTAACTCCACAGTGATGGCA+AGG | 0.624432 | 5_3:-8886418 | None:intergenic |
| AAACAGTAACTAGAATTGAA+GGG | 0.626294 | 5_3:-8886124 | None:intergenic |
| AGATAGCATGAAATGAGAAG+CGG | 0.627497 | 5_3:+8891152 | Msa0796870:three_prime_UTR |
| CTTGCATCTGATTACAACCA+GGG | 0.633133 | 5_3:+8888020 | Msa0796870:CDS |
| CACTATAATGTAGTATCTGG+AGG | 0.635640 | 5_3:+8887996 | Msa0796870:CDS |
| AAGTGTGAGCTTGCATCAGG+AGG | 0.639748 | 5_3:-8890800 | None:intergenic |
| ACTTGCATCTGATTACAACC+AGG | 0.649715 | 5_3:+8888019 | Msa0796870:CDS |
| GTTGTCAAAGTCGAAATGGG+TGG | 0.657876 | 5_3:+8890109 | Msa0796870:CDS |
| ATCCGGCAAAGAGATATCAA+AGG | 0.663680 | 5_3:-8890039 | None:intergenic |
| CCTATCTCGACAGAGACCAT+CGG | 0.673336 | 5_3:-8889138 | None:intergenic |
| CCAATACTATGCAATGCATG+TGG | 0.675078 | 5_3:+8887819 | Msa0796870:CDS |
| GGTGGCCCATTGCGCCAAAG+TGG | 0.675260 | 5_3:-8887789 | None:intergenic |
| GGGTGCAGAAGTTCTGCCTG+CGG | 0.683148 | 5_3:-8890899 | None:intergenic |
| GGTGGAACACTATCATAACA+AGG | 0.694043 | 5_3:+8890127 | Msa0796870:CDS |
| GCAATGCATGTGGTTCGCGG+TGG | 0.695010 | 5_3:+8887829 | Msa0796870:CDS |
| CAAGGACCTTGCCATCACTG+TGG | 0.727560 | 5_3:+8886412 | Msa0796870:CDS |
| TAAACTATGAAGAATTTACG+AGG | 0.736561 | 5_3:+8889734 | Msa0796870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATTATAAATATATAT+TGG | - | chr5_3:8886462-8886481 | None:intergenic | 0.0% |
| !! | AATATAAACTAAGAAAAATT+AGG | + | chr5_3:8886537-8886556 | Msa0796870:intron | 10.0% |
| !!! | TGTTGTATAATTTTTTTTAA+AGG | - | chr5_3:8889857-8889876 | None:intergenic | 10.0% |
| !! | AAAAAAAAGGAGAATAAAAA+TGG | - | chr5_3:8886322-8886341 | None:intergenic | 15.0% |
| !!! | ATTTTTATTCTCCTTTTTTT+TGG | + | chr5_3:8886321-8886340 | Msa0796870:five_prime_UTR | 15.0% |
| !!! | ATATTTTTTGACCAAAAAAA+AGG | - | chr5_3:8886335-8886354 | None:intergenic | 15.0% |
| !!! | TAAAATACATACTATTTTGA+AGG | - | chr5_3:8888217-8888236 | None:intergenic | 15.0% |
| !!! | TAAATTTGCTGATATTATTT+TGG | + | chr5_3:8889440-8889459 | Msa0796870:intron | 15.0% |
| !! | ATTTACAATAAAATGTTAGT+AGG | + | chr5_3:8889643-8889662 | Msa0796870:intron | 15.0% |
| !!! | AACATAATTGTTATTATGTT+TGG | + | chr5_3:8889700-8889719 | Msa0796870:intron | 15.0% |
| !! | TTTACATCTTAAATATATGA+CGG | + | chr5_3:8891030-8891049 | Msa0796870:three_prime_UTR | 15.0% |
| !! | AAAAAGATGTCTAAAAAATT+TGG | - | chr5_3:8891184-8891203 | None:intergenic | 15.0% |
| !! | TTGATGTATATGTTATAGAT+GGG | - | chr5_3:8886103-8886122 | None:intergenic | 20.0% |
| !! | ATTGATGTATATGTTATAGA+TGG | - | chr5_3:8886104-8886123 | None:intergenic | 20.0% |
| !!! | AGTTACTGTTTTTGTTTTTT+TGG | + | chr5_3:8886136-8886155 | Msa0796870:five_prime_UTR | 20.0% |
| !!! | TTTTTTTGGTGTTCTTTTTA+AGG | + | chr5_3:8886150-8886169 | Msa0796870:five_prime_UTR | 20.0% |
| !!! | TTTTTAAGGACTAAAAAGAA+AGG | + | chr5_3:8886164-8886183 | Msa0796870:five_prime_UTR | 20.0% |
| !! | GAAGAAAAAAAAACATTTCT+GGG | + | chr5_3:8886186-8886205 | Msa0796870:five_prime_UTR | 20.0% |
| !!! | AAATTTTGCAGAAGAATAAA+GGG | - | chr5_3:8886365-8886384 | None:intergenic | 20.0% |
| !!! | AAAATTTTGCAGAAGAATAA+AGG | - | chr5_3:8886366-8886385 | None:intergenic | 20.0% |
| !! | ATTTATACAGATTCAAAAGT+AGG | + | chr5_3:8886582-8886601 | Msa0796870:intron | 20.0% |
| !!! | TTCATGTATTCTTATTTCAA+TGG | + | chr5_3:8887039-8887058 | Msa0796870:intron | 20.0% |
| !!! | CACAGATTTATAAAACTTTT+TGG | - | chr5_3:8887263-8887282 | None:intergenic | 20.0% |
| !! | AAAAAATGGATAGTGAAATA+AGG | + | chr5_3:8888250-8888269 | Msa0796870:intron | 20.0% |
| !! | AATGAAAAAAAGAATTGAAG+AGG | + | chr5_3:8888613-8888632 | Msa0796870:intron | 20.0% |
| !! | ACAAATCATATATGTAAACA+CGG | - | chr5_3:8888780-8888799 | None:intergenic | 20.0% |
| !! | TTTGTGAAAAAACAAAAGAT+AGG | - | chr5_3:8888894-8888913 | None:intergenic | 20.0% |
| !!! | ATTTATTGTTTGGTTGATTT+AGG | + | chr5_3:8888928-8888947 | Msa0796870:intron | 20.0% |
| !!! | CATATAAGAATCAACTTTTT+TGG | - | chr5_3:8889367-8889386 | None:intergenic | 20.0% |
| !! | TTTAAATCTACTAAACACAA+GGG | - | chr5_3:8889568-8889587 | None:intergenic | 20.0% |
| !! | ATTTAAATCTACTAAACACA+AGG | - | chr5_3:8889569-8889588 | None:intergenic | 20.0% |
| !!! | AATTGTTATTATGTTTGGTT+AGG | + | chr5_3:8889705-8889724 | Msa0796870:intron | 20.0% |
| !! | ATCATTGATGAATAAATCAA+TGG | - | chr5_3:8890501-8890520 | None:intergenic | 20.0% |
| ! | AAACAGTAACTAGAATTGAA+GGG | - | chr5_3:8886127-8886146 | None:intergenic | 25.0% |
| ! | AAAACAGTAACTAGAATTGA+AGG | - | chr5_3:8886128-8886147 | None:intergenic | 25.0% |
| ! | GGAAGAAAAAAAAACATTTC+TGG | + | chr5_3:8886185-8886204 | Msa0796870:five_prime_UTR | 25.0% |
| !! | AAAAACATTTCTGGGTATAT+TGG | + | chr5_3:8886194-8886213 | Msa0796870:five_prime_UTR | 25.0% |
| !! | TTTGCAACCTATCATATTTT+AGG | + | chr5_3:8886236-8886255 | Msa0796870:five_prime_UTR | 25.0% |
| ! | TAGCAAACCTAAAATATGAT+AGG | - | chr5_3:8886246-8886265 | None:intergenic | 25.0% |
| ! | ATGATGTTGTATTAAGCATT+TGG | + | chr5_3:8886609-8886628 | Msa0796870:intron | 25.0% |
| ! | AACTAACTGGAAAAAGATTA+AGG | + | chr5_3:8886742-8886761 | Msa0796870:intron | 25.0% |
| !!! | ATGGTTTAAATTTTTTGTCG+CGG | + | chr5_3:8886804-8886823 | Msa0796870:intron | 25.0% |
| ! | CTTTATATTACGTTGAAATG+CGG | + | chr5_3:8886846-8886865 | Msa0796870:intron | 25.0% |
| !! | TCTTCACATAGTTTAAAATC+CGG | - | chr5_3:8886965-8886984 | None:intergenic | 25.0% |
| ! | CATTAACATTTAACAGTATC+AGG | - | chr5_3:8886991-8887010 | None:intergenic | 25.0% |
| ! | ATTTCAATGGAAATGAGATA+AGG | + | chr5_3:8887052-8887071 | Msa0796870:intron | 25.0% |
| ! | TTTCAATGGAAATGAGATAA+GGG | + | chr5_3:8887053-8887072 | Msa0796870:intron | 25.0% |
| !!! | ATCCATTTTTGTCTTCTAAA+AGG | + | chr5_3:8887106-8887125 | Msa0796870:intron | 25.0% |
| !!! | ATCCTTTTAGAAGACAAAAA+TGG | - | chr5_3:8887111-8887130 | None:intergenic | 25.0% |
| ! | AAGAGGATATTGATACAAAA+GGG | - | chr5_3:8887550-8887569 | None:intergenic | 25.0% |
| !! | GAATATTGTTTGTTAGAACT+TGG | + | chr5_3:8887700-8887719 | Msa0796870:intron | 25.0% |
| !!! | TGATGATTTTGATGATCAAA+GGG | + | chr5_3:8887905-8887924 | Msa0796870:CDS | 25.0% |
| ! | TTCATAACTGATTAAAGCAT+TGG | + | chr5_3:8888186-8888205 | Msa0796870:intron | 25.0% |
| !! | TCATAACTGATTAAAGCATT+GGG | + | chr5_3:8888187-8888206 | Msa0796870:intron | 25.0% |
| !!! | ACATGTTCATAAGTTGTTTT+CGG | - | chr5_3:8888458-8888477 | None:intergenic | 25.0% |
| ! | TGTTAATTAGGTTTATCTCA+TGG | - | chr5_3:8888534-8888553 | None:intergenic | 25.0% |
| ! | AGCGTATTCAAATGTTAATT+AGG | - | chr5_3:8888546-8888565 | None:intergenic | 25.0% |
| !!! | ATTCTTTTTTTCATTGTCGA+TGG | - | chr5_3:8888608-8888627 | None:intergenic | 25.0% |
| ! | TATATCAACCACATTTATTG+CGG | + | chr5_3:8888670-8888689 | Msa0796870:intron | 25.0% |
| ! | TCATGAAAACATGTTATCTA+AGG | - | chr5_3:8888747-8888766 | None:intergenic | 25.0% |
| !!! | TTATTTTTTTGCGTGTAACT+TGG | + | chr5_3:8889398-8889417 | Msa0796870:intron | 25.0% |
| ! | TAAACTATGAAGAATTTACG+AGG | + | chr5_3:8889734-8889753 | Msa0796870:CDS | 25.0% |
| !! | ATCATACATGAGACTTTTTA+AGG | + | chr5_3:8889886-8889905 | Msa0796870:intron | 25.0% |
| !! | TCATACATGAGACTTTTTAA+GGG | + | chr5_3:8889887-8889906 | Msa0796870:intron | 25.0% |
| ! | TAACAAATCGTAAATCTTGA+TGG | - | chr5_3:8889930-8889949 | None:intergenic | 25.0% |
| ! | TATTAATTGTCCAACTTTGA+AGG | - | chr5_3:8890432-8890451 | None:intergenic | 25.0% |
| ! | ACAATGATTCATTATCTATG+CGG | + | chr5_3:8890463-8890482 | Msa0796870:intron | 25.0% |
| !! | TCTTTGTGATAATTCTTTTG+GGG | - | chr5_3:8890748-8890767 | None:intergenic | 25.0% |
| !! | GTCTTTGTGATAATTCTTTT+GGG | - | chr5_3:8890749-8890768 | None:intergenic | 25.0% |
| !! | AGTCTTTGTGATAATTCTTT+TGG | - | chr5_3:8890750-8890769 | None:intergenic | 25.0% |
| !!! | AGATTCTTTTAACTTTGTTG+AGG | + | chr5_3:8890826-8890845 | Msa0796870:CDS | 25.0% |
| !!! | TGGATGGAATATTTTTGTAT+AGG | + | chr5_3:8891113-8891132 | Msa0796870:three_prime_UTR | 25.0% |
| !!! | TGGAATATTTTTGTATAGGT+TGG | + | chr5_3:8891117-8891136 | Msa0796870:three_prime_UTR | 25.0% |
| TTGGAGAAAAATCTGAGAAA+TGG | - | chr5_3:8886047-8886066 | None:intergenic | 30.0% | |
| !!! | TTGTTCATTTTTCTGAGACA+TGG | + | chr5_3:8886384-8886403 | Msa0796870:exon | 30.0% |
| !!! | TGTTCATTTTTCTGAGACAT+GGG | + | chr5_3:8886385-8886404 | Msa0796870:exon | 30.0% |
| !! | TTTTTGTTTCACTGTGTTTC+TGG | + | chr5_3:8886678-8886697 | Msa0796870:intron | 30.0% |
| ! | TTAAGGAGAGTTGATTGAAT+TGG | + | chr5_3:8886759-8886778 | Msa0796870:intron | 30.0% |
| ! | TTTGTTGCATTGATAGGAAA+TGG | + | chr5_3:8886785-8886804 | Msa0796870:intron | 30.0% |
| CGCATTTCAACGTAATATAA+AGG | - | chr5_3:8886848-8886867 | None:intergenic | 30.0% | |
| TTCAATGGAAATGAGATAAG+GGG | + | chr5_3:8887054-8887073 | Msa0796870:intron | 30.0% | |
| ! | CTAAAAGGATTTTACGAAGT+TGG | + | chr5_3:8887121-8887140 | Msa0796870:intron | 30.0% |
| TACAATACTGATCACCTTAA+TGG | + | chr5_3:8887301-8887320 | Msa0796870:intron | 30.0% | |
| ATGTTCAATACTCTTAGACT+TGG | + | chr5_3:8887427-8887446 | Msa0796870:intron | 30.0% | |
| CAAGAGGATATTGATACAAA+AGG | - | chr5_3:8887551-8887570 | None:intergenic | 30.0% | |
| TAGTTCAATACTTGATTGTG+AGG | - | chr5_3:8887575-8887594 | None:intergenic | 30.0% | |
| !! | CACAATCAAGTATTGAACTA+TGG | + | chr5_3:8887575-8887594 | Msa0796870:intron | 30.0% |
| ATCATACGTAACTGTTTAAG+TGG | + | chr5_3:8887608-8887627 | Msa0796870:intron | 30.0% | |
| ! | CTTTTATATGCTTTGCGATT+TGG | + | chr5_3:8887661-8887680 | Msa0796870:intron | 30.0% |
| ! | TATTGTTTGTTAGAACTTGG+CGG | + | chr5_3:8887703-8887722 | Msa0796870:intron | 30.0% |
| AACAAAGATGTATCTCAGAT+TGG | - | chr5_3:8887734-8887753 | None:intergenic | 30.0% | |
| !! | CTGATGATTTTGATGATCAA+AGG | + | chr5_3:8887904-8887923 | Msa0796870:CDS | 30.0% |
| AACCACTATAATGTAGTATC+TGG | + | chr5_3:8887993-8888012 | Msa0796870:CDS | 30.0% | |
| ! | TATCTTCATCAAAAGCCTTT+TGG | - | chr5_3:8888049-8888068 | None:intergenic | 30.0% |
| ATGTTAGCACAGTCAAAAAA+TGG | + | chr5_3:8888236-8888255 | Msa0796870:intron | 30.0% | |
| ! | ATATCTGAGTTTTGCTTCTA+GGG | + | chr5_3:8888335-8888354 | Msa0796870:intron | 30.0% |
| TTATATCAGTGTTTGGACTT+TGG | - | chr5_3:8888502-8888521 | None:intergenic | 30.0% | |
| TTGATATAACAAGAGCTTCA+TGG | - | chr5_3:8888658-8888677 | None:intergenic | 30.0% | |
| CATATATGTAAACACGGAAT+TGG | - | chr5_3:8888774-8888793 | None:intergenic | 30.0% | |
| GTAAAGAATTTCTTGATCAG+AGG | - | chr5_3:8888825-8888844 | None:intergenic | 30.0% | |
| TGTAATCTGTACATCAAAAC+TGG | + | chr5_3:8888865-8888884 | Msa0796870:intron | 30.0% | |
| ! | TGTTTTTCTGAATCTTCTGA+TGG | + | chr5_3:8889090-8889109 | Msa0796870:CDS | 30.0% |
| ! | GTTTTTCTGAATCTTCTGAT+GGG | + | chr5_3:8889091-8889110 | Msa0796870:CDS | 30.0% |
| ! | TTTTTCTGAATCTTCTGATG+GGG | + | chr5_3:8889092-8889111 | Msa0796870:CDS | 30.0% |
| AGCTCTCTTTCATTTGATAA+TGG | + | chr5_3:8889222-8889241 | Msa0796870:CDS | 30.0% | |
| TTCTTTCACTAGAATAAACG+TGG | + | chr5_3:8889303-8889322 | Msa0796870:intron | 30.0% | |
| TATTCTCCTAGTTGAATTCT+TGG | + | chr5_3:8889597-8889616 | Msa0796870:intron | 30.0% | |
| ATTATTGAAGTTTCTTCCTG+TGG | + | chr5_3:8889783-8889802 | Msa0796870:CDS | 30.0% | |
| !! | CATACATGAGACTTTTTAAG+GGG | + | chr5_3:8889888-8889907 | Msa0796870:intron | 30.0% |
| TAAAAGTAGGGCTGAAAAAT+CGG | + | chr5_3:8890248-8890267 | Msa0796870:CDS | 30.0% | |
| ! | TTTAAGATTTAACGCTAACC+TGG | - | chr5_3:8890354-8890373 | None:intergenic | 30.0% |
| TATCATAAGACCTTCCAATT+AGG | + | chr5_3:8890398-8890417 | Msa0796870:intron | 30.0% | |
| TACTCCTTATGATTTAACTG+AGG | + | chr5_3:8890606-8890625 | Msa0796870:intron | 30.0% | |
| GATTCCTCAGTTAAATCATA+AGG | - | chr5_3:8890613-8890632 | None:intergenic | 30.0% | |
| TACTCCTTATGATTTAACTG+AGG | + | chr5_3:8890606-8890625 | Msa0796870:intron | 30.0% | |
| GATTCCTCAGTTAAATCATA+AGG | - | chr5_3:8890613-8890632 | None:intergenic | 30.0% | |
| TGCGGAAAAGAATTATTAGA+AGG | - | chr5_3:8890884-8890903 | None:intergenic | 30.0% | |
| ! | TTCTAATAATTCTTTTCCGC+AGG | + | chr5_3:8890883-8890902 | Msa0796870:CDS | 30.0% |
| !! | CCTTGTAATGTGTTACTTAA+TGG | - | chr5_3:8890988-8891007 | None:intergenic | 30.0% |
| CCATTAAGTAACACATTACA+AGG | + | chr5_3:8890985-8891004 | Msa0796870:exon | 30.0% | |
| CAAAAAGAAGGTTGCAAATA+AGG | - | chr5_3:8891066-8891085 | None:intergenic | 30.0% | |
| ! | CTTATTTGCAACCTTCTTTT+TGG | + | chr5_3:8891064-8891083 | Msa0796870:three_prime_UTR | 30.0% |
| ! | GATTGTCAAGGATTTGAAAT+TGG | + | chr5_3:8891093-8891112 | Msa0796870:three_prime_UTR | 30.0% |
| ATGGTTGTGAAAAGTGGAAA+TGG | - | chr5_3:8886028-8886047 | None:intergenic | 35.0% | |
| TGAGAAATGGTTGTGAAAAG+TGG | - | chr5_3:8886034-8886053 | None:intergenic | 35.0% | |
| ! | AATGGAAGAGAAAAGAGCAT+TGG | - | chr5_3:8886066-8886085 | None:intergenic | 35.0% |
| ! | AATGCTCTTTTCTCTTCCAT+TGG | + | chr5_3:8886065-8886084 | Msa0796870:five_prime_UTR | 35.0% |
| TGGGAATTTGTACAATCCAA+TGG | - | chr5_3:8886084-8886103 | None:intergenic | 35.0% | |
| GCATGTTCTGTGTAATACTA+TGG | + | chr5_3:8886559-8886578 | Msa0796870:intron | 35.0% | |
| ! | GCATTTGGAATTGAAAGTTG+TGG | + | chr5_3:8886624-8886643 | Msa0796870:intron | 35.0% |
| ! | TCTGAGACAATGTAACTAAC+TGG | + | chr5_3:8886729-8886748 | Msa0796870:intron | 35.0% |
| !! | TGGTGATTTGTTGCATTGAT+AGG | + | chr5_3:8886779-8886798 | Msa0796870:intron | 35.0% |
| GAAATGAGATAAGGGGATTA+TGG | + | chr5_3:8887061-8887080 | Msa0796870:intron | 35.0% | |
| ACAATTTCTCAATGTGTCAG+AGG | + | chr5_3:8887164-8887183 | Msa0796870:intron | 35.0% | |
| TTTCATTAGCCAGAAAGCAA+TGG | - | chr5_3:8887233-8887252 | None:intergenic | 35.0% | |
| TAGCAGAAGTAGTTCCATTA+AGG | - | chr5_3:8887318-8887337 | None:intergenic | 35.0% | |
| !! | TGTTTAAGTGGTTTGTTGTG+CGG | + | chr5_3:8887620-8887639 | Msa0796870:intron | 35.0% |
| ! | TGCTTTGCGATTTGGATTAT+CGG | + | chr5_3:8887669-8887688 | Msa0796870:intron | 35.0% |
| ATTACACACCTTTACATGCT+CGG | + | chr5_3:8887874-8887893 | Msa0796870:CDS | 35.0% | |
| ! | AAGAAGTGAACTTGCTCAAA+CGG | + | chr5_3:8887964-8887983 | Msa0796870:CDS | 35.0% |
| CTCCAGATACTACATTATAG+TGG | - | chr5_3:8887998-8888017 | None:intergenic | 35.0% | |
| CACTATAATGTAGTATCTGG+AGG | + | chr5_3:8887996-8888015 | Msa0796870:CDS | 35.0% | |
| ATGAGTAATCGATCAAGTTC+AGG | + | chr5_3:8888068-8888087 | Msa0796870:CDS | 35.0% | |
| ! | CAGGTTTGTTCTGATTTCAT+TGG | + | chr5_3:8888153-8888172 | Msa0796870:intron | 35.0% |
| ! | AAGAAATTGTGCTGCTATTC+AGG | - | chr5_3:8888291-8888310 | None:intergenic | 35.0% |
| ! | GATATCTGAGTTTTGCTTCT+AGG | + | chr5_3:8888334-8888353 | Msa0796870:intron | 35.0% |
| CAAGCACTTATATCAGTGTT+TGG | - | chr5_3:8888509-8888528 | None:intergenic | 35.0% | |
| AGAACTTTCCGCAATAAATG+TGG | - | chr5_3:8888681-8888700 | None:intergenic | 35.0% | |
| AAGAATATGCGTCACTCATT+GGG | - | chr5_3:8889254-8889273 | None:intergenic | 35.0% | |
| TAAGAATATGCGTCACTCAT+TGG | - | chr5_3:8889255-8889274 | None:intergenic | 35.0% | |
| AGTGACGCATATTCTTATTC+TGG | + | chr5_3:8889258-8889277 | Msa0796870:CDS | 35.0% | |
| !! | GAAAGCTTGCCTTTTAAGAA+CGG | - | chr5_3:8889286-8889305 | None:intergenic | 35.0% |
| ATACTGCTAAACTTCCTGAT+GGG | + | chr5_3:8889809-8889828 | Msa0796870:CDS | 35.0% | |
| ATGAGTTGTCAAAGTCGAAA+TGG | + | chr5_3:8890105-8890124 | Msa0796870:CDS | 35.0% | |
| TGAGTTGTCAAAGTCGAAAT+GGG | + | chr5_3:8890106-8890125 | Msa0796870:CDS | 35.0% | |
| !! | CTACTTTTACATCTCTGCAT+CGG | - | chr5_3:8890237-8890256 | None:intergenic | 35.0% |
| GATGCAGAGATGTAAAAGTA+GGG | + | chr5_3:8890236-8890255 | Msa0796870:intron | 35.0% | |
| TCTCTTCACATTTGCAACAT+TGG | - | chr5_3:8890304-8890323 | None:intergenic | 35.0% | |
| TGAAGGAGTCATATCCTAAT+TGG | - | chr5_3:8890415-8890434 | None:intergenic | 35.0% | |
| CAGAGATGAAGACAATAATG+AGG | + | chr5_3:8890720-8890739 | Msa0796870:intron | 35.0% | |
| CACATTACAAGGTTATACTC+TGG | + | chr5_3:8890996-8891015 | Msa0796870:three_prime_UTR | 35.0% | |
| ! | GTCAAGGATTTGAAATTGGA+TGG | + | chr5_3:8891097-8891116 | Msa0796870:three_prime_UTR | 35.0% |
| AGATAGCATGAAATGAGAAG+CGG | + | chr5_3:8891152-8891171 | Msa0796870:three_prime_UTR | 35.0% | |
| !! | TTCTGAGACATGGGTAAACA+AGG | + | chr5_3:8886394-8886413 | Msa0796870:exon | 40.0% |
| AACCGCAATTATGACAGCAT+CGG | - | chr5_3:8886882-8886901 | None:intergenic | 40.0% | |
| CAACTGCGAACGCAATATAA+CGG | - | chr5_3:8886932-8886951 | None:intergenic | 40.0% | |
| TTATATTGCGTTCGCAGTTG+CGG | + | chr5_3:8886932-8886951 | Msa0796870:intron | 40.0% | |
| ATGGAGCAAGACATGATTGA+GGG | - | chr5_3:8887214-8887233 | None:intergenic | 40.0% | |
| AATGGAGCAAGACATGATTG+AGG | - | chr5_3:8887215-8887234 | None:intergenic | 40.0% | |
| ! | GCAATCAATCTTTTCACCAC+AGG | + | chr5_3:8887479-8887498 | Msa0796870:intron | 40.0% |
| CTAAGAACATCTGTATCCTG+TGG | - | chr5_3:8887498-8887517 | None:intergenic | 40.0% | |
| TACTTGATTGTGAGGACAAG+AGG | - | chr5_3:8887567-8887586 | None:intergenic | 40.0% | |
| ! | TGACAATTGAGCATTGCAAC+AGG | + | chr5_3:8887762-8887781 | Msa0796870:intron | 40.0% |
| !! | TTGCATAGTATTGGCTTCTC+TGG | - | chr5_3:8887813-8887832 | None:intergenic | 40.0% |
| CCACATGCATTGCATAGTAT+TGG | - | chr5_3:8887822-8887841 | None:intergenic | 40.0% | |
| CCAATACTATGCAATGCATG+TGG | + | chr5_3:8887819-8887838 | Msa0796870:CDS | 40.0% | |
| TTACACACCTTTACATGCTC+GGG | + | chr5_3:8887875-8887894 | Msa0796870:CDS | 40.0% | |
| ! | TTGATGATCAAAGGGCTTCA+AGG | + | chr5_3:8887913-8887932 | Msa0796870:CDS | 40.0% |
| ACTTGCATCTGATTACAACC+AGG | + | chr5_3:8888019-8888038 | Msa0796870:CDS | 40.0% | |
| CTTGCATCTGATTACAACCA+GGG | + | chr5_3:8888020-8888039 | Msa0796870:CDS | 40.0% | |
| TTACAACCAGGGATTCCAAA+AGG | + | chr5_3:8888031-8888050 | Msa0796870:CDS | 40.0% | |
| ACAGATGCTAGTGATCTAAC+AGG | + | chr5_3:8888134-8888153 | Msa0796870:CDS | 40.0% | |
| AGTGCTCATTCGCTATTCTA+AGG | + | chr5_3:8888383-8888402 | Msa0796870:intron | 40.0% | |
| !!! | CTCTTTTTTGAAGGCACTGT+GGG | - | chr5_3:8888985-8889004 | None:intergenic | 40.0% |
| !!! | ACGCATGTCCTCTTTTTTGA+AGG | - | chr5_3:8888994-8889013 | None:intergenic | 40.0% |
| TCAAAAAAGAGGACATGCGT+TGG | + | chr5_3:8888994-8889013 | Msa0796870:CDS | 40.0% | |
| !! | TTATGAAAGTGAAGCACCGA+TGG | + | chr5_3:8889122-8889141 | Msa0796870:CDS | 40.0% |
| !! | GACATGGAAGTGTTCTCATT+AGG | + | chr5_3:8889160-8889179 | Msa0796870:CDS | 40.0% |
| ! | CTGGAAAGAGTACAAATCCT+TGG | + | chr5_3:8889529-8889548 | Msa0796870:intron | 40.0% |
| AGGGTGAATCATGATTTCCA+AGG | - | chr5_3:8889549-8889568 | None:intergenic | 40.0% | |
| CAACTGCCAAGAATTCAACT+AGG | - | chr5_3:8889606-8889625 | None:intergenic | 40.0% | |
| CTAGTTGAATTCTTGGCAGT+TGG | + | chr5_3:8889604-8889623 | Msa0796870:intron | 40.0% | |
| AGTTTAGCAGTATCAACCAC+AGG | - | chr5_3:8889802-8889821 | None:intergenic | 40.0% | |
| GATACTGCTAAACTTCCTGA+TGG | + | chr5_3:8889808-8889827 | Msa0796870:CDS | 40.0% | |
| GAGTAGAATTCTAACCCATC+AGG | - | chr5_3:8889826-8889845 | None:intergenic | 40.0% | |
| !! | TTGTTGTTTGTGCAGCCTTA+AGG | + | chr5_3:8889950-8889969 | Msa0796870:intron | 40.0% |
| TTTCAGCAGCTTCTTGCAAA+AGG | + | chr5_3:8890014-8890033 | Msa0796870:CDS | 40.0% | |
| ATCCGGCAAAGAGATATCAA+AGG | - | chr5_3:8890042-8890061 | None:intergenic | 40.0% | |
| !! | CAGTCTTCAGGTTTTACATC+CGG | - | chr5_3:8890059-8890078 | None:intergenic | 40.0% |
| GGTGGAACACTATCATAACA+AGG | + | chr5_3:8890127-8890146 | Msa0796870:CDS | 40.0% | |
| CGATGCAGAGATGTAAAAGT+AGG | + | chr5_3:8890235-8890254 | Msa0796870:intron | 40.0% | |
| AGCAGAAATCAGAACTTTCC+AGG | + | chr5_3:8890333-8890352 | Msa0796870:CDS | 40.0% | |
| GGAGTCATATCCTAATTGGA+AGG | - | chr5_3:8890411-8890430 | None:intergenic | 40.0% | |
| GGATATGACTCCTTCAAAGT+TGG | + | chr5_3:8890419-8890438 | Msa0796870:intron | 40.0% | |
| ! | GGCAAAGGAAATAGGCTTTT+TGG | - | chr5_3:8890782-8890801 | None:intergenic | 40.0% |
| GAGCACCAAAGTATGAAGTT+GGG | - | chr5_3:8890922-8890941 | None:intergenic | 40.0% | |
| TGAGCACCAAAGTATGAAGT+TGG | - | chr5_3:8890923-8890942 | None:intergenic | 40.0% | |
| CAATCCAAGCTCCAAAAAGA+AGG | - | chr5_3:8891078-8891097 | None:intergenic | 40.0% | |
| !!! | TTTTGGAGCTTGGATTGTCA+AGG | + | chr5_3:8891081-8891100 | Msa0796870:three_prime_UTR | 40.0% |
| CACTTGTAACTCCACAGTGA+TGG | - | chr5_3:8886426-8886445 | None:intergenic | 45.0% | |
| AGCCGATGCTGTCATAATTG+CGG | + | chr5_3:8886877-8886896 | Msa0796870:intron | 45.0% | |
| ! | TTGCGGTTGTGATGATGCTA+TGG | + | chr5_3:8886894-8886913 | Msa0796870:intron | 45.0% |
| CTCAATGTGTCAGAGGATCT+TGG | + | chr5_3:8887171-8887190 | Msa0796870:intron | 45.0% | |
| TGTCTTGCTCCATTGCTTTC+TGG | + | chr5_3:8887221-8887240 | Msa0796870:intron | 45.0% | |
| !! | CATAGTATTGGCTTCTCTGG+TGG | - | chr5_3:8887810-8887829 | None:intergenic | 45.0% |
| TATGCAATGCATGTGGTTCG+CGG | + | chr5_3:8887826-8887845 | Msa0796870:CDS | 45.0% | |
| !!! | CAAAAGCCTTTTGGAATCCC+TGG | - | chr5_3:8888040-8888059 | None:intergenic | 45.0% |
| ACCAAATTGTGCGCAGCTTT+CGG | - | chr5_3:8888111-8888130 | None:intergenic | 45.0% | |
| GATCCCATGCGTGATTACAT+GGG | - | chr5_3:8888579-8888598 | None:intergenic | 45.0% | |
| AGATCCCATGCGTGATTACA+TGG | - | chr5_3:8888580-8888599 | None:intergenic | 45.0% | |
| !!! | CCTCTTTTTTGAAGGCACTG+TGG | - | chr5_3:8888986-8889005 | None:intergenic | 45.0% |
| CCACAGTGCCTTCAAAAAAG+AGG | + | chr5_3:8888983-8889002 | Msa0796870:CDS | 45.0% | |
| GTGAGCTTCTCAACAGAAGA+TGG | - | chr5_3:8889033-8889052 | None:intergenic | 45.0% | |
| ATTCTGGCGCCGTTCTTAAA+AGG | + | chr5_3:8889274-8889293 | Msa0796870:intron | 45.0% | |
| AGAAGAGACAAAGTGCGATG+CGG | + | chr5_3:8889463-8889482 | Msa0796870:intron | 45.0% | |
| TTTCAGTGACAAGTCTCAGC+TGG | + | chr5_3:8889510-8889529 | Msa0796870:intron | 45.0% | |
| TGCAGCCTTAAGGTCATGTT+CGG | + | chr5_3:8889960-8889979 | Msa0796870:intron | 45.0% | |
| AGCTACCGAACATGACCTTA+AGG | - | chr5_3:8889968-8889987 | None:intergenic | 45.0% | |
| GTTCGGTAGCTCTCAATTCA+AGG | + | chr5_3:8889977-8889996 | Msa0796870:CDS | 45.0% | |
| CGCCTTTGATATCTCTTTGC+CGG | + | chr5_3:8890037-8890056 | Msa0796870:CDS | 45.0% | |
| TTCAAAGTCTCGCAGTCTTC+AGG | - | chr5_3:8890071-8890090 | None:intergenic | 45.0% | |
| GTTGTCAAAGTCGAAATGGG+TGG | + | chr5_3:8890109-8890128 | Msa0796870:CDS | 45.0% | |
| ! | ACATCTCTGCATCGGTAGAA+GGG | - | chr5_3:8890229-8890248 | None:intergenic | 45.0% |
| ! | TACATCTCTGCATCGGTAGA+AGG | - | chr5_3:8890230-8890249 | None:intergenic | 45.0% |
| GCTGAAAAATCGGATGTTCC+AGG | + | chr5_3:8890258-8890277 | Msa0796870:CDS | 45.0% | |
| CATCAGGAGGCAAAGGAAAT+AGG | - | chr5_3:8890790-8890809 | None:intergenic | 45.0% | |
| CTGCACCCAACTTCATACTT+TGG | + | chr5_3:8890914-8890933 | Msa0796870:CDS | 45.0% | |
| !!! | GCAACCTTCTTTTTGGAGCT+TGG | + | chr5_3:8891071-8891090 | Msa0796870:three_prime_UTR | 45.0% |
| !! | ATTACAATAATTAATTAAAA+TGG | - | chr5_3:8886282-8886301 | None:intergenic | 5.0% |
| !!! | TTTAATTTTAATTTATTGTT+TGG | + | chr5_3:8888918-8888937 | Msa0796870:intron | 5.0% |
| GTAACTCCACAGTGATGGCA+AGG | - | chr5_3:8886421-8886440 | None:intergenic | 50.0% | |
| TTGCAACAGGCACACCACTT+TGG | + | chr5_3:8887775-8887794 | Msa0796870:intron | 50.0% | |
| GTTTCAGCCCGAGCATGTAA+AGG | - | chr5_3:8887885-8887904 | None:intergenic | 50.0% | |
| TCCGAAAGCTGCGCACAATT+TGG | + | chr5_3:8888107-8888126 | Msa0796870:CDS | 50.0% | |
| GAAAGCTGCGCACAATTTGG+TGG | + | chr5_3:8888110-8888129 | Msa0796870:CDS | 50.0% | |
| TGCGTGATTACATGGGCGTT+TGG | - | chr5_3:8888572-8888591 | None:intergenic | 50.0% | |
| AACGCCCATGTAATCACGCA+TGG | + | chr5_3:8888572-8888591 | Msa0796870:intron | 50.0% | |
| ACGCCCATGTAATCACGCAT+GGG | + | chr5_3:8888573-8888592 | Msa0796870:intron | 50.0% | |
| ! | TTTAGGACCTGCTCAGTCAG+TGG | + | chr5_3:8888945-8888964 | Msa0796870:intron | 50.0% |
| !!! | TTTTGAAGGCACTGTGGGAG+TGG | - | chr5_3:8888980-8888999 | None:intergenic | 50.0% |
| CCTATCTCGACAGAGACCAT+CGG | - | chr5_3:8889141-8889160 | None:intergenic | 50.0% | |
| GTCTCTGTCGAGATAGGACA+TGG | + | chr5_3:8889144-8889163 | Msa0796870:CDS | 50.0% | |
| TCGTCGCGAGCTACATAACT+AGG | - | chr5_3:8889189-8889208 | None:intergenic | 50.0% | |
| GATGCTATACCAGCAGATCC+TGG | - | chr5_3:8890279-8890298 | None:intergenic | 50.0% | |
| AAGTGTGAGCTTGCATCAGG+AGG | - | chr5_3:8890803-8890822 | None:intergenic | 50.0% | |
| AGCAAGTGTGAGCTTGCATC+AGG | - | chr5_3:8890806-8890825 | None:intergenic | 50.0% | |
| TGCTGAGCTACTACTAGTGC+TGG | - | chr5_3:8890948-8890967 | None:intergenic | 50.0% | |
| CAAGGACCTTGCCATCACTG+TGG | + | chr5_3:8886412-8886431 | Msa0796870:CDS | 55.0% | |
| GCACACCACTTTGGCGCAAT+GGG | + | chr5_3:8887784-8887803 | Msa0796870:CDS | 55.0% | |
| ACCTGCTCAGTCAGTGGTCT+GGG | + | chr5_3:8888951-8888970 | Msa0796870:CDS | 55.0% | |
| CCGATGGTCTCTGTCGAGAT+AGG | + | chr5_3:8889138-8889157 | Msa0796870:CDS | 55.0% | |
| TCGGATGTTCCAGGATCTGC+TGG | + | chr5_3:8890267-8890286 | Msa0796870:CDS | 55.0% | |
| GAGCTTGCATCAGGAGGCAA+AGG | - | chr5_3:8890797-8890816 | None:intergenic | 55.0% | |
| TGCGTTCGCAGTTGCGGTTG+TGG | + | chr5_3:8886938-8886957 | Msa0796870:intron | 60.0% | |
| TCGCAGTTGCGGTTGTGGAC+CGG | + | chr5_3:8886943-8886962 | Msa0796870:intron | 60.0% | |
| GGCACACCACTTTGGCGCAA+TGG | + | chr5_3:8887783-8887802 | Msa0796870:intron | 60.0% | |
| GCAATGCATGTGGTTCGCGG+TGG | + | chr5_3:8887829-8887848 | Msa0796870:CDS | 60.0% | |
| ATGCATGTGGTTCGCGGTGG+AGG | + | chr5_3:8887832-8887851 | Msa0796870:CDS | 60.0% | |
| TGGTTCGCGGTGGAGGACAA+AGG | + | chr5_3:8887839-8887858 | Msa0796870:CDS | 60.0% | |
| GGTTCGCGGTGGAGGACAAA+GGG | + | chr5_3:8887840-8887859 | Msa0796870:CDS | 60.0% | |
| GACCTGCTCAGTCAGTGGTC+TGG | + | chr5_3:8888950-8888969 | Msa0796870:CDS | 60.0% | |
| ! | TCCCAGACCACTGACTGAGC+AGG | - | chr5_3:8888955-8888974 | None:intergenic | 60.0% |
| AGCTCGCGACGAAGAGTCTG+AGG | + | chr5_3:8889197-8889216 | Msa0796870:CDS | 60.0% | |
| GGGTGCAGAAGTTCTGCCTG+CGG | - | chr5_3:8890902-8890921 | None:intergenic | 60.0% | |
| GGTGGCCCATTGCGCCAAAG+TGG | - | chr5_3:8887792-8887811 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 8885980 | 8891206 | 8885980 | ID=Msa0796870;Name=Msa0796870 |
| chr5_3 | mRNA | 8885980 | 8891206 | 8885980 | ID=Msa0796870-mRNA-1;Parent=Msa0796870;Name=Msa0796870-mRNA-1;_AED=0.06;_eAED=0.06;_QI=423|0.83|0.85|1|1|1|7|215|471 |
| chr5_3 | exon | 8885980 | 8886442 | 8885980 | ID=Msa0796870-mRNA-1:exon:3777;Parent=Msa0796870-mRNA-1 |
| chr5_3 | exon | 8887784 | 8888155 | 8887784 | ID=Msa0796870-mRNA-1:exon:3778;Parent=Msa0796870-mRNA-1 |
| chr5_3 | exon | 8888950 | 8889284 | 8888950 | ID=Msa0796870-mRNA-1:exon:3779;Parent=Msa0796870-mRNA-1 |
| chr5_3 | exon | 8889727 | 8889830 | 8889727 | ID=Msa0796870-mRNA-1:exon:3780;Parent=Msa0796870-mRNA-1 |
| chr5_3 | exon | 8889965 | 8890148 | 8889965 | ID=Msa0796870-mRNA-1:exon:3781;Parent=Msa0796870-mRNA-1 |
| chr5_3 | exon | 8890243 | 8890354 | 8890243 | ID=Msa0796870-mRNA-1:exon:3782;Parent=Msa0796870-mRNA-1 |
| chr5_3 | exon | 8890723 | 8891206 | 8890723 | ID=Msa0796870-mRNA-1:exon:3783;Parent=Msa0796870-mRNA-1 |
| chr5_3 | five_prime_UTR | 8885980 | 8886402 | 8885980 | ID=Msa0796870-mRNA-1:five_prime_utr;Parent=Msa0796870-mRNA-1 |
| chr5_3 | CDS | 8886403 | 8886442 | 8886403 | ID=Msa0796870-mRNA-1:cds;Parent=Msa0796870-mRNA-1 |
| chr5_3 | CDS | 8887784 | 8888155 | 8887784 | ID=Msa0796870-mRNA-1:cds;Parent=Msa0796870-mRNA-1 |
| chr5_3 | CDS | 8888950 | 8889284 | 8888950 | ID=Msa0796870-mRNA-1:cds;Parent=Msa0796870-mRNA-1 |
| chr5_3 | CDS | 8889727 | 8889830 | 8889727 | ID=Msa0796870-mRNA-1:cds;Parent=Msa0796870-mRNA-1 |
| chr5_3 | CDS | 8889965 | 8890148 | 8889965 | ID=Msa0796870-mRNA-1:cds;Parent=Msa0796870-mRNA-1 |
| chr5_3 | CDS | 8890243 | 8890354 | 8890243 | ID=Msa0796870-mRNA-1:cds;Parent=Msa0796870-mRNA-1 |
| chr5_3 | CDS | 8890723 | 8890991 | 8890723 | ID=Msa0796870-mRNA-1:cds;Parent=Msa0796870-mRNA-1 |
| chr5_3 | three_prime_UTR | 8890992 | 8891206 | 8890992 | ID=Msa0796870-mRNA-1:three_prime_utr;Parent=Msa0796870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
