Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0796910 | G7JYM1 | 93.731 | 335 | 6 | 1 | 1 | 320 | 1 | 335 | 0.0 | 637 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0796910 | Msa1287500 | 0.804260 | 2.352871e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0796910 | MtrunA17_Chr5g0399901 | 93.731 | 335 | 6 | 1 | 1 | 320 | 1 | 335 | 0.0 | 637 |
| Msa0796910 | MtrunA17_Chr7g0250211 | 51.360 | 331 | 138 | 5 | 1 | 314 | 1 | 325 | 2.26e-120 | 349 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0796910 | AT4G17070.1 | 56.923 | 325 | 114 | 4 | 17 | 319 | 17 | 337 | 7.16e-134 | 384 |
Find 89 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCGCTTCTTCTTGCCGTTC+AGG | 0.235610 | 5_3:-8959984 | None:intergenic |
| TGGACTTCTGGTCTCATCTT+TGG | 0.244257 | 5_3:+8960026 | Msa0796910:CDS |
| GACTCTCTGCACGGTAAAAT+TGG | 0.245884 | 5_3:-8960703 | None:intergenic |
| AATCAAACGGTTTAACAAAA+TGG | 0.290860 | 5_3:-8958676 | None:intergenic |
| GGATTGAACATTTGGAGCTT+TGG | 0.296628 | 5_3:+8958844 | Msa0796910:CDS |
| GTTTCGGAGTTTAGGAATAT+TGG | 0.308114 | 5_3:+8958771 | Msa0796910:CDS |
| GACCTTGTCTTTGTGATACT+TGG | 0.312234 | 5_3:+8958958 | Msa0796910:CDS |
| GATTGAACATTTGGAGCTTT+GGG | 0.313465 | 5_3:+8958845 | Msa0796910:CDS |
| GCTAAGCTAATAAAGAATTC+TGG | 0.321705 | 5_3:-8962199 | None:intergenic |
| TCTGCAACATTCATGTCTTC+AGG | 0.329643 | 5_3:-8962271 | None:intergenic |
| GAGATAATTAGTTGGACTTC+TGG | 0.330854 | 5_3:+8960014 | Msa0796910:CDS |
| TATTGGGTCAACGTTGGATT+TGG | 0.337581 | 5_3:+8958788 | Msa0796910:CDS |
| TTTGTAGGTTTCAATTCTTT+TGG | 0.341365 | 5_3:+8962422 | Msa0796910:three_prime_UTR |
| TTTGGGGTTCAGCTGTGAAA+TGG | 0.348730 | 5_3:+8958862 | Msa0796910:CDS |
| TTGGGGTTCAGCTGTGAAAT+GGG | 0.348739 | 5_3:+8958863 | Msa0796910:CDS |
| TTGTTTCAAAATTTCAATCT+TGG | 0.350197 | 5_3:-8962399 | None:intergenic |
| TTGTAGAGGGATTGAACATT+TGG | 0.352124 | 5_3:+8958836 | Msa0796910:CDS |
| TTTCGGAGTTTAGGAATATT+GGG | 0.354752 | 5_3:+8958772 | Msa0796910:CDS |
| GTGGTTCTGTTTCGGAGTTT+AGG | 0.361159 | 5_3:+8958763 | Msa0796910:CDS |
| TCCCCACCTTACCTGATGTT+TGG | 0.362089 | 5_3:+8962308 | Msa0796910:CDS |
| TACCTTGAATTAATGCAAAT+GGG | 0.369067 | 5_3:-8962084 | None:intergenic |
| AACAAGAAGTGGTTCTGTTT+CGG | 0.378933 | 5_3:+8958755 | Msa0796910:CDS |
| GCGCTTCTTCTTGCCGTTCA+GGG | 0.383304 | 5_3:-8959983 | None:intergenic |
| TCTTGTAAATCTATGTGTAC+TGG | 0.387269 | 5_3:+8958927 | Msa0796910:CDS |
| ACTGAACCTCTTCTTAAGAT+TGG | 0.389494 | 5_3:-8962157 | None:intergenic |
| AGAGGTTCAGTTGCTTTAAT+CGG | 0.390617 | 5_3:+8962169 | Msa0796910:CDS |
| GTACCTTGAATTAATGCAAA+TGG | 0.397660 | 5_3:-8962085 | None:intergenic |
| TTGAAAATACGTATAAGCTT+TGG | 0.403355 | 5_3:-8962447 | None:intergenic |
| CTTCTGAGCAAGAAAGGAAC+GGG | 0.412860 | 5_3:-8962361 | None:intergenic |
| CGGCAAGAAGAAGCGCCTAA+TGG | 0.421268 | 5_3:+8959990 | Msa0796910:CDS |
| GGCAAGAAGAAGCGCCTAAT+GGG | 0.422781 | 5_3:+8959991 | Msa0796910:CDS |
| CAACTAATTATCTCCCCATT+AGG | 0.427729 | 5_3:-8960005 | None:intergenic |
| AAGATTGGACAGTCTTCAAC+AGG | 0.429962 | 5_3:-8962142 | None:intergenic |
| CCCTCACTGTGCTCCACACA+CGG | 0.436663 | 5_3:+8960634 | Msa0796910:CDS |
| TCTGGTCTCATCTTTGGAAA+AGG | 0.445432 | 5_3:+8960032 | Msa0796910:CDS |
| TTGATTCTTCTGAGCAAGAA+AGG | 0.445719 | 5_3:-8962367 | None:intergenic |
| TTTCCAGGGTATTATTGGAT+TGG | 0.446563 | 5_3:+8960375 | Msa0796910:intron |
| TTGCCTATGCGCCATTGTGC+AGG | 0.450005 | 5_3:+8960677 | Msa0796910:CDS |
| TATATATATCCGTTCTCAAA+TGG | 0.450907 | 5_3:-8962587 | None:intergenic |
| AGGCAACAGTTCTAGAATAT+AGG | 0.454860 | 5_3:-8960660 | None:intergenic |
| TTAACATTGTTCCAAACATC+AGG | 0.456879 | 5_3:-8962319 | None:intergenic |
| ATGTTGAAGGGTGTTGTAGA+GGG | 0.459948 | 5_3:+8958823 | Msa0796910:CDS |
| TCAACAGGAAGTTTATTGAA+TGG | 0.462606 | 5_3:-8962127 | None:intergenic |
| CAGAGAGTCGAGGTCAATCA+TGG | 0.465585 | 5_3:+8960717 | Msa0796910:CDS |
| TCTATGTGTACTGGGAAAGA+TGG | 0.477675 | 5_3:+8958936 | Msa0796910:CDS |
| GCTAATAAAGAATTCTGGAC+CGG | 0.479091 | 5_3:-8962194 | None:intergenic |
| CTTGTAAATCTATGTGTACT+GGG | 0.480690 | 5_3:+8958928 | Msa0796910:CDS |
| CTCTCTGCAGTAACAAGAAG+TGG | 0.492856 | 5_3:+8958744 | Msa0796910:CDS |
| TCAGTTGCTTTAATCGGTCC+CGG | 0.494464 | 5_3:+8962175 | Msa0796910:CDS |
| CAGCCTGCACAATGGCGCAT+AGG | 0.495252 | 5_3:-8960680 | None:intergenic |
| CGGTTTAACAAAATGGTGCT+TGG | 0.500683 | 5_3:-8958669 | None:intergenic |
| CGCTTCTTCTTGCCGTTCAG+GGG | 0.507117 | 5_3:-8959982 | None:intergenic |
| ACCTTGTCTTTGTGATACTT+GGG | 0.507565 | 5_3:+8958959 | Msa0796910:CDS |
| AATGTTGAAGGGTGTTGTAG+AGG | 0.532744 | 5_3:+8958822 | Msa0796910:CDS |
| TTCCAAACATCAGGTAAGGT+GGG | 0.540243 | 5_3:-8962310 | None:intergenic |
| AGAATATAGGCAACCGTGTG+TGG | 0.540739 | 5_3:-8960647 | None:intergenic |
| GCTTAGCTGATCATTCAGAA+TGG | 0.548215 | 5_3:+8962215 | Msa0796910:CDS |
| GACTGTCCAATCTTAAGAAG+AGG | 0.550767 | 5_3:+8962151 | Msa0796910:CDS |
| GTTGGTGAGAAGAATGTTGA+AGG | 0.552001 | 5_3:+8958810 | Msa0796910:CDS |
| TGGGGTTCAGCTGTGAAATG+GGG | 0.556980 | 5_3:+8958864 | Msa0796910:CDS |
| ATTGTTCCAAACATCAGGTA+AGG | 0.563809 | 5_3:-8962314 | None:intergenic |
| GTTCCAAACATCAGGTAAGG+TGG | 0.566546 | 5_3:-8962311 | None:intergenic |
| GGGTCAACGTTGGATTTGGT+TGG | 0.581467 | 5_3:+8958792 | Msa0796910:CDS |
| CTAATAAAGAATTCTGGACC+GGG | 0.590349 | 5_3:-8962193 | None:intergenic |
| AGGAACGGGTTTCTTCAAAA+CGG | 0.591662 | 5_3:-8962347 | None:intergenic |
| AGTGTTGGTTAAAGAAACAA+AGG | 0.592137 | 5_3:+8959949 | Msa0796910:intron |
| TCTTCTGAGCAAGAAAGGAA+CGG | 0.595069 | 5_3:-8962362 | None:intergenic |
| AAAGAGCTTCCATTTGAGAA+CGG | 0.598221 | 5_3:+8962578 | Msa0796910:three_prime_UTR |
| CTAATGGGGAGATAATTAGT+TGG | 0.607611 | 5_3:+8960006 | Msa0796910:CDS |
| ATTGAACATTTGGAGCTTTG+GGG | 0.612386 | 5_3:+8958846 | Msa0796910:CDS |
| TAGGAATATTGGGTCAACGT+TGG | 0.612668 | 5_3:+8958782 | Msa0796910:CDS |
| ACCTTGAATTAATGCAAATG+GGG | 0.619873 | 5_3:-8962083 | None:intergenic |
| CAAGGTACATTAGAAGCACA+AGG | 0.623038 | 5_3:+8962100 | Msa0796910:CDS |
| TCCAAACATCAGGTAAGGTG+GGG | 0.625666 | 5_3:-8962309 | None:intergenic |
| GGTCAATCATGGGATTCAGA+AGG | 0.629530 | 5_3:+8960728 | Msa0796910:CDS |
| GGGACAGCTTAGCCCCTGAA+CGG | 0.636235 | 5_3:+8959970 | Msa0796910:CDS |
| ACCGTGTGTGGAGCACAGTG+AGG | 0.642211 | 5_3:-8960635 | None:intergenic |
| CACTTCTTGTTACTGCAGAG+AGG | 0.644712 | 5_3:-8958743 | None:intergenic |
| ATTGACCTCGACTCTCTGCA+CGG | 0.645340 | 5_3:-8960712 | None:intergenic |
| GTGTTGGTTAAAGAAACAAA+GGG | 0.645649 | 5_3:+8959950 | Msa0796910:intron |
| CCGTGTGTGGAGCACAGTGA+GGG | 0.647084 | 5_3:-8960634 | None:intergenic |
| AGAGAGTCGAGGTCAATCAT+GGG | 0.649366 | 5_3:+8960718 | Msa0796910:CDS |
| GCAAGAAGAAGCGCCTAATG+GGG | 0.649666 | 5_3:+8959992 | Msa0796910:CDS |
| ATTGGATTGGAAACTGAACA+CGG | 0.650566 | 5_3:+8960388 | Msa0796910:CDS |
| TCTCATCTTTGGAAAAGGAG+AGG | 0.663105 | 5_3:+8960037 | Msa0796910:CDS |
| AAAATTGGCAGCCTGCACAA+TGG | 0.683556 | 5_3:-8960688 | None:intergenic |
| CCTTGAATTAATGCAAATGG+GGG | 0.686229 | 5_3:-8962082 | None:intergenic |
| TTGGTGAGAAGAATGTTGAA+GGG | 0.704145 | 5_3:+8958811 | Msa0796910:CDS |
| ACCCAAGTATCACAAAGACA+AGG | 0.711556 | 5_3:-8958960 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATATGATAAAATTAGTT+CGG | + | chr5_3:8959651-8959670 | Msa0796910:intron | 10.0% |
| !!! | TTTAATTTAATTCAACAATT+TGG | + | chr5_3:8960247-8960266 | Msa0796910:intron | 10.0% |
| !!! | ATTTTTTTTGTATTTACATT+TGG | - | chr5_3:8961342-8961361 | None:intergenic | 10.0% |
| !! | TGTAAATACAAAAAAAATAA+TGG | + | chr5_3:8961344-8961363 | Msa0796910:intron | 10.0% |
| !!! | ATTTTTATTGGATTAAAAAA+GGG | - | chr5_3:8961702-8961721 | None:intergenic | 10.0% |
| !!! | AATTTTTATTGGATTAAAAA+AGG | - | chr5_3:8961703-8961722 | None:intergenic | 10.0% |
| !!! | AATGAACTTATTTTTTAAAC+CGG | - | chr5_3:8959375-8959394 | None:intergenic | 15.0% |
| !! | ATGTTAGTAAATTAAACTAA+TGG | + | chr5_3:8959753-8959772 | Msa0796910:intron | 15.0% |
| !! | TGTTAGTAAATTAAACTAAT+GGG | + | chr5_3:8959754-8959773 | Msa0796910:intron | 15.0% |
| !!! | ATTCTATTTTAAAATTGACT+TGG | + | chr5_3:8960091-8960110 | Msa0796910:intron | 15.0% |
| !!! | TTTGTAATCTCAATTTTTAT+TGG | - | chr5_3:8961714-8961733 | None:intergenic | 15.0% |
| !!! | TAAAATATTTTTGTTCCTTT+GGG | - | chr5_3:8961810-8961829 | None:intergenic | 15.0% |
| !!! | ATAAAATATTTTTGTTCCTT+TGG | - | chr5_3:8961811-8961830 | None:intergenic | 15.0% |
| !!! | TCTTCACTTAATTTTATTTT+TGG | + | chr5_3:8962529-8962548 | Msa0796910:three_prime_UTR | 15.0% |
| !!! | TACAATAAAAAATTTGCTTC+CGG | + | chr5_3:8959353-8959372 | Msa0796910:intron | 20.0% |
| !! | AAAAAATAAGTCTGATTTAG+TGG | - | chr5_3:8959695-8959714 | None:intergenic | 20.0% |
| !!! | GAATTTTATCAACTTATGAA+AGG | + | chr5_3:8960311-8960330 | Msa0796910:intron | 20.0% |
| !!! | CGTATCTTACATTTTTTATA+TGG | - | chr5_3:8960757-8960776 | None:intergenic | 20.0% |
| !! | TACAACTATTAATGCAATTA+TGG | + | chr5_3:8960797-8960816 | Msa0796910:intron | 20.0% |
| !!! | ATCTATATGTGCTATTTTTT+TGG | + | chr5_3:8960933-8960952 | Msa0796910:intron | 20.0% |
| !! | ACAGTTAAATGAATCTAAAA+TGG | - | chr5_3:8960992-8961011 | None:intergenic | 20.0% |
| !! | TAACTGTATGAATTATTGTT+AGG | + | chr5_3:8961005-8961024 | Msa0796910:intron | 20.0% |
| !! | AAGAAAAAATAGTCCTAAAA+GGG | - | chr5_3:8961572-8961591 | None:intergenic | 20.0% |
| !! | TTGTTTCAAAATTTCAATCT+TGG | - | chr5_3:8962402-8962421 | None:intergenic | 20.0% |
| !!! | GAAATTTTGAAACAATTTGT+AGG | + | chr5_3:8962407-8962426 | Msa0796910:exon | 20.0% |
| ! | AATCAAACGGTTTAACAAAA+TGG | - | chr5_3:8958679-8958698 | None:intergenic | 25.0% |
| ! | ACACAAAAAGAAGAATCAAA+CGG | - | chr5_3:8958692-8958711 | None:intergenic | 25.0% |
| ! | TGAAATAATCACAATTGACA+CGG | - | chr5_3:8959133-8959152 | None:intergenic | 25.0% |
| !!! | TTATTGTTTGTTGTGTGAAT+CGG | + | chr5_3:8959479-8959498 | Msa0796910:intron | 25.0% |
| !! | CAAGATCAACTTTTTGTTAA+AGG | - | chr5_3:8959909-8959928 | None:intergenic | 25.0% |
| ! | GAACTTAATAACTTTCTTTC+AGG | - | chr5_3:8960154-8960173 | None:intergenic | 25.0% |
| ! | CATGTAATTTGGAGATAATT+AGG | - | chr5_3:8960197-8960216 | None:intergenic | 25.0% |
| ! | AACAGAAGAAACATGTAATT+TGG | - | chr5_3:8960208-8960227 | None:intergenic | 25.0% |
| !!! | AATTCATCTGTTTTTTTTCC+AGG | + | chr5_3:8960360-8960379 | Msa0796910:intron | 25.0% |
| !!! | ATTCATCTGTTTTTTTTCCA+GGG | + | chr5_3:8960361-8960380 | Msa0796910:intron | 25.0% |
| !!! | TTTTTTTTCCAGGGTATTAT+TGG | + | chr5_3:8960370-8960389 | Msa0796910:intron | 25.0% |
| !! | AAAGAAACATGGAAAGTATA+AGG | - | chr5_3:8960500-8960519 | None:intergenic | 25.0% |
| ! | TCATCATTACTAAAGAAACA+TGG | - | chr5_3:8960511-8960530 | None:intergenic | 25.0% |
| ! | AAACCATAATTATCATGTGA+CGG | - | chr5_3:8960547-8960566 | None:intergenic | 25.0% |
| ! | ACTATTAATGCAATTATGGT+AGG | + | chr5_3:8960801-8960820 | Msa0796910:intron | 25.0% |
| ! | CTCAACAAAACAATTCATAA+TGG | - | chr5_3:8960913-8960932 | None:intergenic | 25.0% |
| !! | CATATTTTTCTTGCTTTCAT+AGG | + | chr5_3:8960959-8960978 | Msa0796910:intron | 25.0% |
| !! | TTAAATGAATCTAAAATGGC+TGG | - | chr5_3:8960988-8961007 | None:intergenic | 25.0% |
| ! | ATCTTTCACTGATAATACAA+AGG | - | chr5_3:8961152-8961171 | None:intergenic | 25.0% |
| ! | TGTATTATCAGTGAAAGATT+AGG | + | chr5_3:8961045-8961064 | Msa0796910:intron | 25.0% |
| ! | GTATTATCAGTGAAAGATTT+GGG | - | chr5_3:8961150-8961169 | None:intergenic | 25.0% |
| ! | TGTATTATCAGTGAAAGATT+TGG | - | chr5_3:8961045-8961064 | None:intergenic | 25.0% |
| ! | ATCTTTCACTGATAATACAA+AGG | + | chr5_3:8961152-8961171 | Msa0796910:intron | 25.0% |
| !! | TTTTCTTTACTCGTTTGAAT+CGG | + | chr5_3:8961260-8961279 | Msa0796910:intron | 25.0% |
| ! | GAAGAAAAAATAGTCCTAAA+AGG | - | chr5_3:8961573-8961592 | None:intergenic | 25.0% |
| !!! | TTAGGACTATTTTTTCTTCA+CGG | + | chr5_3:8961574-8961593 | Msa0796910:intron | 25.0% |
| ! | ATTCTCATATACTCTATATG+AGG | - | chr5_3:8961623-8961642 | None:intergenic | 25.0% |
| !! | TTTTTGAACAATGTTCCTTT+GGG | - | chr5_3:8961779-8961798 | None:intergenic | 25.0% |
| !!! | TTTTTTGAACAATGTTCCTT+TGG | - | chr5_3:8961780-8961799 | None:intergenic | 25.0% |
| ! | TCAAAAAAATGTATTCCCAA+AGG | + | chr5_3:8961792-8961811 | Msa0796910:intron | 25.0% |
| ! | ACAAACATTATTGTTCACTA+TGG | - | chr5_3:8961998-8962017 | None:intergenic | 25.0% |
| ! | TGTATAATAGTACTTTGTAG+TGG | + | chr5_3:8962015-8962034 | Msa0796910:intron | 25.0% |
| !!! | TAAATGAGTTCTTATTTTGC+AGG | + | chr5_3:8962048-8962067 | Msa0796910:intron | 25.0% |
| ! | TACCTTGAATTAATGCAAAT+GGG | - | chr5_3:8962087-8962106 | None:intergenic | 25.0% |
| !! | AAACAAGAATACACAGTTTT+TGG | + | chr5_3:8962238-8962257 | Msa0796910:CDS | 25.0% |
| !! | TTTGTAGGTTTCAATTCTTT+TGG | + | chr5_3:8962422-8962441 | Msa0796910:three_prime_UTR | 25.0% |
| ! | TTGAAAATACGTATAAGCTT+TGG | - | chr5_3:8962450-8962469 | None:intergenic | 25.0% |
| ! | TATATATATCCGTTCTCAAA+TGG | - | chr5_3:8962590-8962609 | None:intergenic | 25.0% |
| !!! | TTTGTGTGTTTTGTTTCTTG+CGG | + | chr5_3:8958705-8958724 | Msa0796910:CDS | 30.0% |
| TTTCGGAGTTTAGGAATATT+GGG | + | chr5_3:8958772-8958791 | Msa0796910:CDS | 30.0% | |
| TCTTGTAAATCTATGTGTAC+TGG | + | chr5_3:8958927-8958946 | Msa0796910:CDS | 30.0% | |
| CTTGTAAATCTATGTGTACT+GGG | + | chr5_3:8958928-8958947 | Msa0796910:CDS | 30.0% | |
| AAAACTACACCAATTCCAAA+AGG | - | chr5_3:8959188-8959207 | None:intergenic | 30.0% | |
| ! | TGCATGTTGTAGTACATTTT+AGG | + | chr5_3:8959400-8959419 | Msa0796910:intron | 30.0% |
| !! | TATTGTTTGTTGTGTGAATC+GGG | + | chr5_3:8959480-8959499 | Msa0796910:intron | 30.0% |
| ! | TGTTTTCTTGCACATTCTTT+TGG | + | chr5_3:8959805-8959824 | Msa0796910:intron | 30.0% |
| !! | AGTGTTGGTTAAAGAAACAA+AGG | + | chr5_3:8959949-8959968 | Msa0796910:intron | 30.0% |
| !! | GTGTTGGTTAAAGAAACAAA+GGG | + | chr5_3:8959950-8959969 | Msa0796910:intron | 30.0% |
| TTTATGATGTATTGCACAGT+TGG | + | chr5_3:8960289-8960308 | Msa0796910:intron | 30.0% | |
| TTTCATATTTGAACCTTCAC+TGG | + | chr5_3:8960569-8960588 | Msa0796910:intron | 30.0% | |
| AGGAAATAATTATCCAGTGA+AGG | - | chr5_3:8960585-8960604 | None:intergenic | 30.0% | |
| ATCAAAACATGCAAAGTATG+AGG | - | chr5_3:8960605-8960624 | None:intergenic | 30.0% | |
| TACTGCAATAACCTAACTAA+TGG | - | chr5_3:8960858-8960877 | None:intergenic | 30.0% | |
| TGAAAGATTAGGTAATGACA+AGG | + | chr5_3:8961056-8961075 | Msa0796910:intron | 30.0% | |
| GAAAGATTAGGTAATGACAA+GGG | + | chr5_3:8961057-8961076 | Msa0796910:intron | 30.0% | |
| AAAGATTAGGTAATGACAAG+GGG | + | chr5_3:8961058-8961077 | Msa0796910:intron | 30.0% | |
| TACGGGGTAATATTGTAATA+TGG | + | chr5_3:8961089-8961108 | Msa0796910:intron | 30.0% | |
| !!! | CGATTTTTGGTAATGAAGTT+TGG | - | chr5_3:8961218-8961237 | None:intergenic | 30.0% |
| ! | AACAATGAACACACGATTTT+TGG | - | chr5_3:8961231-8961250 | None:intergenic | 30.0% |
| TTTCTTTACTCGTTTGAATC+GGG | + | chr5_3:8961261-8961280 | Msa0796910:intron | 30.0% | |
| TAAATCAGTTCACCTTGATT+TGG | - | chr5_3:8961381-8961400 | None:intergenic | 30.0% | |
| ! | CTCTGGATTTTCATTTATCA+AGG | + | chr5_3:8961424-8961443 | Msa0796910:intron | 30.0% |
| ! | TTAGAAAACACGGGTATTTT+TGG | - | chr5_3:8961529-8961548 | None:intergenic | 30.0% |
| !!! | CATTTTAGCTTAGAAAACAC+GGG | - | chr5_3:8961538-8961557 | None:intergenic | 30.0% |
| !!! | CCATTTTAGCTTAGAAAACA+CGG | - | chr5_3:8961539-8961558 | None:intergenic | 30.0% |
| TTGAATACAATGAATGTACC+TGG | - | chr5_3:8961673-8961692 | None:intergenic | 30.0% | |
| TATTTCCATATTCGCAATCT+CGG | + | chr5_3:8961828-8961847 | Msa0796910:intron | 30.0% | |
| ACCTTGAATTAATGCAAATG+GGG | - | chr5_3:8962086-8962105 | None:intergenic | 30.0% | |
| GTACCTTGAATTAATGCAAA+TGG | - | chr5_3:8962088-8962107 | None:intergenic | 30.0% | |
| TCAACAGGAAGTTTATTGAA+TGG | - | chr5_3:8962130-8962149 | None:intergenic | 30.0% | |
| GCTAAGCTAATAAAGAATTC+TGG | - | chr5_3:8962202-8962221 | None:intergenic | 30.0% | |
| TTAACATTGTTCCAAACATC+AGG | - | chr5_3:8962322-8962341 | None:intergenic | 30.0% | |
| ! | AACAAGAAGTGGTTCTGTTT+CGG | + | chr5_3:8958755-8958774 | Msa0796910:CDS | 35.0% |
| GTTTCGGAGTTTAGGAATAT+TGG | + | chr5_3:8958771-8958790 | Msa0796910:CDS | 35.0% | |
| TTGGTGAGAAGAATGTTGAA+GGG | + | chr5_3:8958811-8958830 | Msa0796910:CDS | 35.0% | |
| TTGTAGAGGGATTGAACATT+TGG | + | chr5_3:8958836-8958855 | Msa0796910:CDS | 35.0% | |
| ! | GATTGAACATTTGGAGCTTT+GGG | + | chr5_3:8958845-8958864 | Msa0796910:CDS | 35.0% |
| ! | ATTGAACATTTGGAGCTTTG+GGG | + | chr5_3:8958846-8958865 | Msa0796910:CDS | 35.0% |
| ACCTTGTCTTTGTGATACTT+GGG | + | chr5_3:8958959-8958978 | Msa0796910:CDS | 35.0% | |
| TTTAAATTCCCCCTTCCATT+TGG | + | chr5_3:8959156-8959175 | Msa0796910:intron | 35.0% | |
| TTAAATTCCCCCTTCCATTT+GGG | + | chr5_3:8959157-8959176 | Msa0796910:intron | 35.0% | |
| ATGTGATCTTGATCTAGTCT+AGG | - | chr5_3:8959258-8959277 | None:intergenic | 35.0% | |
| !! | TTTTAGGAACTTGCCTGTTT+AGG | + | chr5_3:8959416-8959435 | Msa0796910:intron | 35.0% |
| ! | TGATTTTGTGTTTGTGAACC+AGG | - | chr5_3:8959619-8959638 | None:intergenic | 35.0% |
| ! | GTTCGGTTTTGCTTATACTT+AGG | + | chr5_3:8959668-8959687 | Msa0796910:intron | 35.0% |
| TGGGAATGATTTCACTGTAT+TGG | + | chr5_3:8959773-8959792 | Msa0796910:intron | 35.0% | |
| TATAGAGTTCATCTGAGTTC+AGG | + | chr5_3:8959843-8959862 | Msa0796910:intron | 35.0% | |
| ! | TCAAACTTTTGTTGCAGTGT+TGG | + | chr5_3:8959934-8959953 | Msa0796910:intron | 35.0% |
| CAACTAATTATCTCCCCATT+AGG | - | chr5_3:8960008-8960027 | None:intergenic | 35.0% | |
| CTAATGGGGAGATAATTAGT+TGG | + | chr5_3:8960006-8960025 | Msa0796910:CDS | 35.0% | |
| GAGATAATTAGTTGGACTTC+TGG | + | chr5_3:8960014-8960033 | Msa0796910:CDS | 35.0% | |
| ! | TTTCCAGGGTATTATTGGAT+TGG | + | chr5_3:8960375-8960394 | Msa0796910:intron | 35.0% |
| TTTCCAATCCAATAATACCC+TGG | - | chr5_3:8960381-8960400 | None:intergenic | 35.0% | |
| ! | ATTGGATTGGAAACTGAACA+CGG | + | chr5_3:8960388-8960407 | Msa0796910:CDS | 35.0% |
| GATCCGTCACATGATAATTA+TGG | + | chr5_3:8960541-8960560 | Msa0796910:intron | 35.0% | |
| !! | AGGCAACAGTTCTAGAATAT+AGG | - | chr5_3:8960663-8960682 | None:intergenic | 35.0% |
| AGAAAGACTGAGCTTAAAAC+AGG | - | chr5_3:8960882-8960901 | None:intergenic | 35.0% | |
| AAGATTAGGTAATGACAAGG+GGG | + | chr5_3:8961059-8961078 | Msa0796910:intron | 35.0% | |
| AGTCAGAGATGTTGTGAAAT+TGG | + | chr5_3:8961192-8961211 | Msa0796910:intron | 35.0% | |
| GCAAATAGAATCAAAGTCTC+TGG | + | chr5_3:8961407-8961426 | Msa0796910:intron | 35.0% | |
| TCCTAAAATGTCTATTGCTG+AGG | - | chr5_3:8961491-8961510 | None:intergenic | 35.0% | |
| !!! | ACATTTTAGGATCGAGAACA+TGG | + | chr5_3:8961500-8961519 | Msa0796910:intron | 35.0% |
| ! | CCGTGTTTTCTAAGCTAAAA+TGG | + | chr5_3:8961536-8961555 | Msa0796910:intron | 35.0% |
| ! | TGGATTTCAATGTCCCTTTT+AGG | + | chr5_3:8961556-8961575 | Msa0796910:intron | 35.0% |
| CTCTATATGAGGACAAAGAA+AGG | - | chr5_3:8961612-8961631 | None:intergenic | 35.0% | |
| GCTCATATTCACTGTTAAGT+GGG | - | chr5_3:8961976-8961995 | None:intergenic | 35.0% | |
| CCTTGAATTAATGCAAATGG+GGG | - | chr5_3:8962085-8962104 | None:intergenic | 35.0% | |
| ACTGAACCTCTTCTTAAGAT+TGG | - | chr5_3:8962160-8962179 | None:intergenic | 35.0% | |
| ! | AGAGGTTCAGTTGCTTTAAT+CGG | + | chr5_3:8962169-8962188 | Msa0796910:CDS | 35.0% |
| CTAATAAAGAATTCTGGACC+GGG | - | chr5_3:8962196-8962215 | None:intergenic | 35.0% | |
| GCTAATAAAGAATTCTGGAC+CGG | - | chr5_3:8962197-8962216 | None:intergenic | 35.0% | |
| ATTGTTCCAAACATCAGGTA+AGG | - | chr5_3:8962317-8962336 | None:intergenic | 35.0% | |
| TTGATTCTTCTGAGCAAGAA+AGG | - | chr5_3:8962370-8962389 | None:intergenic | 35.0% | |
| AAAGAGCTTCCATTTGAGAA+CGG | + | chr5_3:8962578-8962597 | Msa0796910:three_prime_UTR | 35.0% | |
| CGGTTTAACAAAATGGTGCT+TGG | - | chr5_3:8958672-8958691 | None:intergenic | 40.0% | |
| !!! | GTGTTTTGTTTCTTGCGGTT+TGG | + | chr5_3:8958710-8958729 | Msa0796910:CDS | 40.0% |
| TAGGAATATTGGGTCAACGT+TGG | + | chr5_3:8958782-8958801 | Msa0796910:CDS | 40.0% | |
| TATTGGGTCAACGTTGGATT+TGG | + | chr5_3:8958788-8958807 | Msa0796910:CDS | 40.0% | |
| ! | GTTGGTGAGAAGAATGTTGA+AGG | + | chr5_3:8958810-8958829 | Msa0796910:CDS | 40.0% |
| !! | AATGTTGAAGGGTGTTGTAG+AGG | + | chr5_3:8958822-8958841 | Msa0796910:CDS | 40.0% |
| !! | ATGTTGAAGGGTGTTGTAGA+GGG | + | chr5_3:8958823-8958842 | Msa0796910:CDS | 40.0% |
| ! | GGATTGAACATTTGGAGCTT+TGG | + | chr5_3:8958844-8958863 | Msa0796910:CDS | 40.0% |
| TCTATGTGTACTGGGAAAGA+TGG | + | chr5_3:8958936-8958955 | Msa0796910:CDS | 40.0% | |
| GACCTTGTCTTTGTGATACT+TGG | + | chr5_3:8958958-8958977 | Msa0796910:CDS | 40.0% | |
| ACCCAAGTATCACAAAGACA+AGG | - | chr5_3:8958963-8958982 | None:intergenic | 40.0% | |
| ! | TGTGATACTTGGGTGTTTTG+TGG | + | chr5_3:8958969-8958988 | Msa0796910:intron | 40.0% |
| ! | GTGATACTTGGGTGTTTTGT+GGG | + | chr5_3:8958970-8958989 | Msa0796910:intron | 40.0% |
| TACATGTGTTTGTGTCTGTG+TGG | - | chr5_3:8959048-8959067 | None:intergenic | 40.0% | |
| AAGGATAGACCCAAATGGAA+GGG | - | chr5_3:8959169-8959188 | None:intergenic | 40.0% | |
| AAAGGATAGACCCAAATGGA+AGG | - | chr5_3:8959170-8959189 | None:intergenic | 40.0% | |
| ! | TCCATTTGGGTCTATCCTTT+TGG | + | chr5_3:8959170-8959189 | Msa0796910:intron | 40.0% |
| TCCAAAAGGATAGACCCAAA+TGG | - | chr5_3:8959174-8959193 | None:intergenic | 40.0% | |
| !!! | TGGGTCTATCCTTTTGGAAT+TGG | + | chr5_3:8959176-8959195 | Msa0796910:intron | 40.0% |
| TTGCTAATCCAAGCCTAAAC+AGG | - | chr5_3:8959432-8959451 | None:intergenic | 40.0% | |
| TCCAACCTGAGATACTACTT+CGG | - | chr5_3:8959732-8959751 | None:intergenic | 40.0% | |
| ! | TCTGGTCTCATCTTTGGAAA+AGG | + | chr5_3:8960032-8960051 | Msa0796910:CDS | 40.0% |
| ! | TCTCATCTTTGGAAAAGGAG+AGG | + | chr5_3:8960037-8960056 | Msa0796910:CDS | 40.0% |
| AAGGAGAGGTAACTGAAGTT+TGG | + | chr5_3:8960051-8960070 | Msa0796910:intron | 40.0% | |
| CACTCTCATTGCCATTAGTT+AGG | + | chr5_3:8960844-8960863 | Msa0796910:intron | 40.0% | |
| GAAACCATCACACCAAATCA+AGG | + | chr5_3:8961366-8961385 | Msa0796910:intron | 40.0% | |
| !! | TTCACCTTGATTTGGTGTGA+TGG | - | chr5_3:8961373-8961392 | None:intergenic | 40.0% |
| ! | GGGTTACAAAAGTGCAAACA+TGG | - | chr5_3:8961455-8961474 | None:intergenic | 40.0% |
| ! | TGTTTGCACTTTTGTAACCC+AGG | + | chr5_3:8961455-8961474 | Msa0796910:intron | 40.0% |
| ! | GCCTCAGCAATAGACATTTT+AGG | + | chr5_3:8961487-8961506 | Msa0796910:intron | 40.0% |
| CATGTTAACGATACAAAGCC+AGG | + | chr5_3:8961652-8961671 | Msa0796910:intron | 40.0% | |
| ! | TTCTGTTGATGCCATTTGCA+TGG | + | chr5_3:8961746-8961765 | Msa0796910:intron | 40.0% |
| TGGGAATACTACCATGCAAA+TGG | - | chr5_3:8961760-8961779 | None:intergenic | 40.0% | |
| TTGCATGGTAGTATTCCCAA+AGG | + | chr5_3:8961761-8961780 | Msa0796910:intron | 40.0% | |
| GGCTCATATTCACTGTTAAG+TGG | - | chr5_3:8961977-8961996 | None:intergenic | 40.0% | |
| !!! | TGAGTTCTTATTTTGCAGGC+TGG | + | chr5_3:8962052-8962071 | Msa0796910:intron | 40.0% |
| !!! | CTTATTTTGCAGGCTGGTTT+TGG | + | chr5_3:8962058-8962077 | Msa0796910:intron | 40.0% |
| CCCCCATTTGCATTAATTCA+AGG | + | chr5_3:8962082-8962101 | Msa0796910:CDS | 40.0% | |
| ! | CAAGGTACATTAGAAGCACA+AGG | + | chr5_3:8962100-8962119 | Msa0796910:CDS | 40.0% |
| AAGATTGGACAGTCTTCAAC+AGG | - | chr5_3:8962145-8962164 | None:intergenic | 40.0% | |
| GACTGTCCAATCTTAAGAAG+AGG | + | chr5_3:8962151-8962170 | Msa0796910:CDS | 40.0% | |
| GCTTAGCTGATCATTCAGAA+TGG | + | chr5_3:8962215-8962234 | Msa0796910:CDS | 40.0% | |
| TCTGCAACATTCATGTCTTC+AGG | - | chr5_3:8962274-8962293 | None:intergenic | 40.0% | |
| TTCCAAACATCAGGTAAGGT+GGG | - | chr5_3:8962313-8962332 | None:intergenic | 40.0% | |
| ! | AGGAACGGGTTTCTTCAAAA+CGG | - | chr5_3:8962350-8962369 | None:intergenic | 40.0% |
| TCTTCTGAGCAAGAAAGGAA+CGG | - | chr5_3:8962365-8962384 | None:intergenic | 40.0% | |
| CACTTCTTGTTACTGCAGAG+AGG | - | chr5_3:8958746-8958765 | None:intergenic | 45.0% | |
| CTCTCTGCAGTAACAAGAAG+TGG | + | chr5_3:8958744-8958763 | Msa0796910:CDS | 45.0% | |
| ! | GTGGTTCTGTTTCGGAGTTT+AGG | + | chr5_3:8958763-8958782 | Msa0796910:CDS | 45.0% |
| ! | TTTGGGGTTCAGCTGTGAAA+TGG | + | chr5_3:8958862-8958881 | Msa0796910:CDS | 45.0% |
| TTGGGGTTCAGCTGTGAAAT+GGG | + | chr5_3:8958863-8958882 | Msa0796910:CDS | 45.0% | |
| ! | CTTGGGTGTTTTGTGGGAAT+CGG | + | chr5_3:8958976-8958995 | Msa0796910:intron | 45.0% |
| ! | TTGGGTGTTTTGTGGGAATC+GGG | + | chr5_3:8958977-8958996 | Msa0796910:intron | 45.0% |
| GAGGCTTGTGGATCCAAATT+CGG | + | chr5_3:8958999-8959018 | Msa0796910:intron | 45.0% | |
| GTGTCTGTGTGGACAAAAAC+AGG | - | chr5_3:8959037-8959056 | None:intergenic | 45.0% | |
| ATCACAATTGACACGGACAC+TGG | - | chr5_3:8959126-8959145 | None:intergenic | 45.0% | |
| AGGATAGACCCAAATGGAAG+GGG | - | chr5_3:8959168-8959187 | None:intergenic | 45.0% | |
| TCAGACCGAAGTAGTATCTC+AGG | + | chr5_3:8959724-8959743 | Msa0796910:intron | 45.0% | |
| ACCGAAGTAGTATCTCAGGT+TGG | + | chr5_3:8959728-8959747 | Msa0796910:intron | 45.0% | |
| TGGACTTCTGGTCTCATCTT+TGG | + | chr5_3:8960026-8960045 | Msa0796910:CDS | 45.0% | |
| AGAATATAGGCAACCGTGTG+TGG | - | chr5_3:8960650-8960669 | None:intergenic | 45.0% | |
| AAAATTGGCAGCCTGCACAA+TGG | - | chr5_3:8960691-8960710 | None:intergenic | 45.0% | |
| GACTCTCTGCACGGTAAAAT+TGG | - | chr5_3:8960706-8960725 | None:intergenic | 45.0% | |
| AGAGAGTCGAGGTCAATCAT+GGG | + | chr5_3:8960718-8960737 | Msa0796910:CDS | 45.0% | |
| GGTCAATCATGGGATTCAGA+AGG | + | chr5_3:8960728-8960747 | Msa0796910:CDS | 45.0% | |
| TGACAAGGGGGAACTGTTTA+CGG | + | chr5_3:8961071-8961090 | Msa0796910:intron | 45.0% | |
| CTGTACCGAGATTGCGAATA+TGG | - | chr5_3:8961836-8961855 | None:intergenic | 45.0% | |
| TAAGTGGGAAGAGTCTTCAG+TGG | - | chr5_3:8961961-8961980 | None:intergenic | 45.0% | |
| ! | TCAGTTGCTTTAATCGGTCC+CGG | + | chr5_3:8962175-8962194 | Msa0796910:CDS | 45.0% |
| TCCAAACATCAGGTAAGGTG+GGG | - | chr5_3:8962312-8962331 | None:intergenic | 45.0% | |
| GTTCCAAACATCAGGTAAGG+TGG | - | chr5_3:8962314-8962333 | None:intergenic | 45.0% | |
| CTTCTGAGCAAGAAAGGAAC+GGG | - | chr5_3:8962364-8962383 | None:intergenic | 45.0% | |
| ! | GGGTCAACGTTGGATTTGGT+TGG | + | chr5_3:8958792-8958811 | Msa0796910:CDS | 50.0% |
| TGGGGTTCAGCTGTGAAATG+GGG | + | chr5_3:8958864-8958883 | Msa0796910:CDS | 50.0% | |
| TTGTGGATCCAAATTCGGCG+AGG | + | chr5_3:8959004-8959023 | Msa0796910:intron | 50.0% | |
| GTAACGTACCTCGCCGAATT+TGG | - | chr5_3:8959015-8959034 | None:intergenic | 50.0% | |
| GGATAGACCCAAATGGAAGG+GGG | - | chr5_3:8959167-8959186 | None:intergenic | 50.0% | |
| GGAACTTGCCTGTTTAGGCT+TGG | + | chr5_3:8959421-8959440 | Msa0796910:intron | 50.0% | |
| !! | CTGGCTCGAGAGATTAGTCT+CGG | - | chr5_3:8959515-8959534 | None:intergenic | 50.0% |
| AAGCTCTTTGCGGTCATACC+TGG | - | chr5_3:8959534-8959553 | None:intergenic | 50.0% | |
| ATGGGGAGCAAAGCTCTTTG+CGG | - | chr5_3:8959544-8959563 | None:intergenic | 50.0% | |
| AAGAGCTTTGCTCCCCATTC+TGG | + | chr5_3:8959546-8959565 | Msa0796910:intron | 50.0% | |
| CAGTTGCATGCAGAGATACC+TGG | + | chr5_3:8959598-8959617 | Msa0796910:intron | 50.0% | |
| !! | GGCAAGAAGAAGCGCCTAAT+GGG | + | chr5_3:8959991-8960010 | Msa0796910:CDS | 50.0% |
| !! | GCAAGAAGAAGCGCCTAATG+GGG | + | chr5_3:8959992-8960011 | Msa0796910:CDS | 50.0% |
| ! | TTTTACCGTGCAGAGAGTCG+AGG | + | chr5_3:8960707-8960726 | Msa0796910:CDS | 50.0% |
| ATTGACCTCGACTCTCTGCA+CGG | - | chr5_3:8960715-8960734 | None:intergenic | 50.0% | |
| CAGAGAGTCGAGGTCAATCA+TGG | + | chr5_3:8960717-8960736 | Msa0796910:CDS | 50.0% | |
| GACAAGGGGGAACTGTTTAC+GGG | + | chr5_3:8961072-8961091 | Msa0796910:intron | 50.0% | |
| ACAAGGGGGAACTGTTTACG+GGG | + | chr5_3:8961073-8961092 | Msa0796910:intron | 50.0% | |
| ! | GCTGAGGCATCAAATCTCCT+GGG | - | chr5_3:8961475-8961494 | None:intergenic | 50.0% |
| ! | TGCTGAGGCATCAAATCTCC+TGG | - | chr5_3:8961476-8961495 | None:intergenic | 50.0% |
| TCCCCACCTTACCTGATGTT+TGG | + | chr5_3:8962308-8962327 | Msa0796910:CDS | 50.0% | |
| ! | GGTGTTTTGTGGGAATCGGG+AGG | + | chr5_3:8958980-8958999 | Msa0796910:intron | 55.0% |
| !! | CGAGAGATTAGTCTCGGCAG+AGG | - | chr5_3:8959509-8959528 | None:intergenic | 55.0% |
| CGAGACTAATCTCTCGAGCC+AGG | + | chr5_3:8959513-8959532 | Msa0796910:intron | 55.0% | |
| AGAGATTGATCCCTCGAGCC+GGG | - | chr5_3:8959577-8959596 | None:intergenic | 55.0% | |
| CAGAGATTGATCCCTCGAGC+CGG | - | chr5_3:8959578-8959597 | None:intergenic | 55.0% | |
| CGCTTCTTCTTGCCGTTCAG+GGG | - | chr5_3:8959985-8960004 | None:intergenic | 55.0% | |
| GCGCTTCTTCTTGCCGTTCA+GGG | - | chr5_3:8959986-8960005 | None:intergenic | 55.0% | |
| !! | CGGCAAGAAGAAGCGCCTAA+TGG | + | chr5_3:8959990-8960009 | Msa0796910:CDS | 55.0% |
| TTGCCTATGCGCCATTGTGC+AGG | + | chr5_3:8960677-8960696 | Msa0796910:CDS | 55.0% | |
| TGTGGGAATCGGGAGGCTTG+TGG | + | chr5_3:8958987-8959006 | Msa0796910:intron | 60.0% | |
| CTCCCCATTCTGGTCCTACC+CGG | + | chr5_3:8959556-8959575 | Msa0796910:intron | 60.0% | |
| AGCCGGGTAGGACCAGAATG+GGG | - | chr5_3:8959561-8959580 | None:intergenic | 60.0% | |
| GAGCCGGGTAGGACCAGAAT+GGG | - | chr5_3:8959562-8959581 | None:intergenic | 60.0% | |
| ATTGATCCCTCGAGCCGGGT+AGG | - | chr5_3:8959573-8959592 | None:intergenic | 60.0% | |
| GGGACAGCTTAGCCCCTGAA+CGG | + | chr5_3:8959970-8959989 | Msa0796910:CDS | 60.0% | |
| GGCGCTTCTTCTTGCCGTTC+AGG | - | chr5_3:8959987-8960006 | None:intergenic | 60.0% | |
| CCGTGTGTGGAGCACAGTGA+GGG | - | chr5_3:8960637-8960656 | None:intergenic | 60.0% | |
| CCCTCACTGTGCTCCACACA+CGG | + | chr5_3:8960634-8960653 | Msa0796910:CDS | 60.0% | |
| ACCGTGTGTGGAGCACAGTG+AGG | - | chr5_3:8960638-8960657 | None:intergenic | 60.0% | |
| CAGCCTGCACAATGGCGCAT+AGG | - | chr5_3:8960683-8960702 | None:intergenic | 60.0% | |
| CGAGCCGGGTAGGACCAGAA+TGG | - | chr5_3:8959563-8959582 | None:intergenic | 65.0% | |
| ! | TTCTGGTCCTACCCGGCTCG+AGG | + | chr5_3:8959563-8959582 | Msa0796910:intron | 65.0% |
| ! | TCTGGTCCTACCCGGCTCGA+GGG | + | chr5_3:8959564-8959583 | Msa0796910:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 8958648 | 8962637 | 8958648 | ID=Msa0796910;Name=Msa0796910 |
| chr5_3 | mRNA | 8958648 | 8962637 | 8958648 | ID=Msa0796910-mRNA-1;Parent=Msa0796910;Name=Msa0796910-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0.75|0.8|1|1|1|5|229|320 |
| chr5_3 | exon | 8958648 | 8958980 | 8958648 | ID=Msa0796910-mRNA-1:exon:3784;Parent=Msa0796910-mRNA-1 |
| chr5_3 | exon | 8959951 | 8960058 | 8959951 | ID=Msa0796910-mRNA-1:exon:3785;Parent=Msa0796910-mRNA-1 |
| chr5_3 | exon | 8960382 | 8960426 | 8960382 | ID=Msa0796910-mRNA-1:exon:3786;Parent=Msa0796910-mRNA-1 |
| chr5_3 | exon | 8960629 | 8960766 | 8960629 | ID=Msa0796910-mRNA-1:exon:3787;Parent=Msa0796910-mRNA-1 |
| chr5_3 | exon | 8962070 | 8962637 | 8962070 | ID=Msa0796910-mRNA-1:exon:3788;Parent=Msa0796910-mRNA-1 |
| chr5_3 | CDS | 8958648 | 8958980 | 8958648 | ID=Msa0796910-mRNA-1:cds;Parent=Msa0796910-mRNA-1 |
| chr5_3 | CDS | 8959951 | 8960058 | 8959951 | ID=Msa0796910-mRNA-1:cds;Parent=Msa0796910-mRNA-1 |
| chr5_3 | CDS | 8960382 | 8960426 | 8960382 | ID=Msa0796910-mRNA-1:cds;Parent=Msa0796910-mRNA-1 |
| chr5_3 | CDS | 8960629 | 8960766 | 8960629 | ID=Msa0796910-mRNA-1:cds;Parent=Msa0796910-mRNA-1 |
| chr5_3 | CDS | 8962070 | 8962408 | 8962070 | ID=Msa0796910-mRNA-1:cds;Parent=Msa0796910-mRNA-1 |
| chr5_3 | three_prime_UTR | 8962409 | 8962637 | 8962409 | ID=Msa0796910-mRNA-1:three_prime_utr;Parent=Msa0796910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
