Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1287500 | sp|Q6NLF7|LTPG7_ARATH | 48.214 | 112 | 51 | 3 | 10 | 120 | 12 | 117 | 8.96e-28 | 103 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1287500 | G7JK58 | 94.286 | 140 | 7 | 1 | 1 | 140 | 1 | 139 | 1.44e-87 | 261 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0796910 | Msa1287500 | 0.804260 | 2.352871e-49 | -8.615850e-47 |
| Msa1234630 | Msa1287500 | 0.820273 | 7.481890e-53 | -8.615850e-47 |
| Msa1257920 | Msa1287500 | 0.807743 | 4.355238e-50 | -8.615850e-47 |
| Msa1162430 | Msa1287500 | 0.817771 | 2.773927e-52 | -8.615850e-47 |
| Msa1186670 | Msa1287500 | 0.814741 | 1.319871e-51 | -8.615850e-47 |
| Msa0557240 | Msa1287500 | 0.807832 | 4.168143e-50 | -8.615850e-47 |
| Msa0557250 | Msa1287500 | 0.839773 | 1.296315e-57 | -8.615850e-47 |
| Msa0589000 | Msa1287500 | 0.805613 | 1.226882e-49 | -8.615850e-47 |
| Msa0589060 | Msa1287500 | 0.809031 | 2.312645e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1287500 | MtrunA17_Chr4g0056621 | 84.247 | 146 | 18 | 2 | 1 | 142 | 1 | 145 | 3.21e-81 | 235 |
| Msa1287500 | MtrunA17_Chr5g0398821 | 35.593 | 118 | 72 | 3 | 5 | 120 | 9 | 124 | 9.00e-19 | 77.4 |
| Msa1287500 | MtrunA17_Chr5g0398831 | 35.000 | 120 | 67 | 4 | 9 | 119 | 12 | 129 | 5.31e-17 | 73.2 |
| Msa1287500 | MtrunA17_Chr5g0398841 | 40.909 | 88 | 48 | 3 | 29 | 113 | 34 | 120 | 2.43e-16 | 71.2 |
| Msa1287500 | MtrunA17_Chr4g0003641 | 32.624 | 141 | 83 | 6 | 6 | 142 | 10 | 142 | 2.34e-14 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1287500 | AT1G62790.1 | 48.214 | 112 | 51 | 3 | 10 | 120 | 12 | 117 | 9.11e-29 | 103 |
| Msa1287500 | AT1G62790.2 | 48.214 | 112 | 51 | 3 | 10 | 120 | 12 | 117 | 1.04e-28 | 103 |
| Msa1287500 | AT1G70250.1 | 42.857 | 98 | 50 | 2 | 12 | 108 | 8 | 100 | 6.80e-21 | 88.2 |
| Msa1287500 | AT1G73550.1 | 33.333 | 144 | 86 | 4 | 5 | 138 | 5 | 148 | 2.88e-15 | 68.6 |
| Msa1287500 | AT1G73550.2 | 33.929 | 112 | 69 | 3 | 5 | 111 | 5 | 116 | 2.19e-14 | 65.9 |
| Msa1287500 | AT1G18280.1 | 37.838 | 74 | 45 | 1 | 32 | 104 | 41 | 114 | 1.88e-11 | 59.3 |
| Msa1287500 | AT1G73560.1 | 33.333 | 108 | 70 | 1 | 15 | 120 | 16 | 123 | 7.77e-11 | 57.0 |
Find 28 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTAATCAGCACATGGAATT+AGG | 0.241616 | 8_3:-38028915 | None:intergenic |
| CTGAGTAGTATTGATGTTAA+AGG | 0.279278 | 8_3:-38029046 | None:intergenic |
| TACTTCCGGCGGGTCCCCAC+CGG | 0.360570 | 8_3:+38030052 | Msa1287500:CDS |
| TGTAATCTCTTCTATGCTCC+TGG | 0.366171 | 8_3:+38029012 | Msa1287500:CDS |
| TAGGTGGTTTGGTTGAATTA+AGG | 0.397792 | 8_3:-38028936 | None:intergenic |
| TTGTGGATCTCTTTCGTGTT+TGG | 0.402859 | 8_3:-38028746 | None:intergenic |
| ACAGCAAGAACTAGGTGGTT+TGG | 0.446180 | 8_3:-38028947 | None:intergenic |
| TCAGCTCCAGCTCCTACTTC+CGG | 0.447064 | 8_3:+38030038 | Msa1287500:CDS |
| ATTGGATCACAGCAAGAACT+AGG | 0.493116 | 8_3:-38028955 | None:intergenic |
| ATTAGGTTTGTAGCACATGA+AGG | 0.504332 | 8_3:-38028898 | None:intergenic |
| TTAAAGGTTGCAAGCAAACC+AGG | 0.530324 | 8_3:-38029030 | None:intergenic |
| CTCCAGCTCCTACTTCCGGC+GGG | 0.538414 | 8_3:+38030042 | Msa1287500:CDS |
| AAGTGAAAATCAAGTTGAGG+AGG | 0.565292 | 8_3:-38030094 | None:intergenic |
| TTACATACTGTGTTTGCAAG+TGG | 0.570284 | 8_3:-38029112 | None:intergenic |
| CTTTAACATCAATACTACTC+AGG | 0.573773 | 8_3:+38029047 | Msa1287500:CDS |
| GCTCCAGCTCCTACTTCCGG+CGG | 0.581336 | 8_3:+38030041 | Msa1287500:CDS |
| TTAGGTTTGTAGCACATGAA+GGG | 0.589848 | 8_3:-38028897 | None:intergenic |
| GAAGAAGCTTCTTACCCGGT+GGG | 0.610745 | 8_3:-38030067 | None:intergenic |
| GATCTCTTTCGTGTTTGGTG+AGG | 0.624795 | 8_3:-38028741 | None:intergenic |
| AAGAAGTGAAAATCAAGTTG+AGG | 0.639631 | 8_3:-38030097 | None:intergenic |
| ATGTGAAGAAGCTTCTTACC+CGG | 0.648362 | 8_3:-38030071 | None:intergenic |
| TGAAGAAGCTTCTTACCCGG+TGG | 0.659606 | 8_3:-38030068 | None:intergenic |
| AAGAAGCTTCTTACCCGGTG+GGG | 0.680973 | 8_3:-38030066 | None:intergenic |
| CTTGCGTTGAGTCGTAACTG+TGG | 0.693927 | 8_3:+38029072 | Msa1287500:CDS |
| GGATCACAGCAAGAACTAGG+TGG | 0.697170 | 8_3:-38028952 | None:intergenic |
| GAATTAAGGTAATCAGCACA+TGG | 0.709687 | 8_3:-38028922 | None:intergenic |
| TTTGCAAGTGGTAAGATCAG+TGG | 0.711684 | 8_3:-38029100 | None:intergenic |
| GTTGATGATCAACACTACAG+AGG | 0.726445 | 8_3:+38028855 | Msa1287500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAAAATGTATAAATAAA+GGG | - | chr8_3:38029666-38029685 | None:intergenic | 10.0% |
| !! | TAAGAAAAATGTATAAATAA+AGG | - | chr8_3:38029667-38029686 | None:intergenic | 10.0% |
| !!! | AAAGCATTTTTTTTTTTTTA+GGG | + | chr8_3:38029937-38029956 | Msa1287500:intron | 10.0% |
| !! | AAGAAAAATGTATAAATAAA+GGG | - | chr8_3:38029666-38029685 | None:intergenic | 10.0% |
| !! | TAAGAAAAATGTATAAATAA+AGG | - | chr8_3:38029667-38029686 | None:intergenic | 10.0% |
| !!! | AAAGCATTTTTTTTTTTTTA+GGG | + | chr8_3:38029937-38029956 | Msa1287500:intron | 10.0% |
| !! | TTATTCAACAACAAAAAAAA+TGG | + | chr8_3:38028792-38028811 | Msa1287500:exon | 15.0% |
| !!! | TGAATATAACTTTTTTTTCT+AGG | - | chr8_3:38029354-38029373 | None:intergenic | 15.0% |
| !!! | TGATATTTTGACAATAAATT+TGG | + | chr8_3:38029387-38029406 | Msa1287500:intron | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | - | chr8_3:38029601-38029620 | None:intergenic | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | - | chr8_3:38029602-38029621 | None:intergenic | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | - | chr8_3:38029665-38029684 | None:intergenic | 15.0% |
| !!! | GAAAGCATTTTTTTTTTTTT+AGG | + | chr8_3:38029936-38029955 | Msa1287500:intron | 15.0% |
| !!! | AAGCATTTTTTTTTTTTTAG+GGG | + | chr8_3:38029938-38029957 | Msa1287500:intron | 15.0% |
| !! | TTATTCAACAACAAAAAAAA+TGG | + | chr8_3:38028792-38028811 | Msa1287500:exon | 15.0% |
| !!! | TGAATATAACTTTTTTTTCT+AGG | - | chr8_3:38029354-38029373 | None:intergenic | 15.0% |
| !!! | TGATATTTTGACAATAAATT+TGG | + | chr8_3:38029387-38029406 | Msa1287500:intron | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | - | chr8_3:38029601-38029620 | None:intergenic | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | - | chr8_3:38029602-38029621 | None:intergenic | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | - | chr8_3:38029665-38029684 | None:intergenic | 15.0% |
| !!! | GAAAGCATTTTTTTTTTTTT+AGG | + | chr8_3:38029936-38029955 | Msa1287500:intron | 15.0% |
| !!! | AAGCATTTTTTTTTTTTTAG+GGG | + | chr8_3:38029938-38029957 | Msa1287500:intron | 15.0% |
| !!! | AAATTTGATTTTAGAGTTTG+TGG | - | chr8_3:38028766-38028785 | None:intergenic | 20.0% |
| !! | ATATTTGTCACATCAATTAA+AGG | - | chr8_3:38029161-38029180 | None:intergenic | 20.0% |
| !! | TTGATTCAATTCTTAATTTC+TGG | - | chr8_3:38029290-38029309 | None:intergenic | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | - | chr8_3:38029532-38029551 | None:intergenic | 20.0% |
| !! | GTTGTATTGAAAATTGAAAT+GGG | - | chr8_3:38029568-38029587 | None:intergenic | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | - | chr8_3:38029569-38029588 | None:intergenic | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | - | chr8_3:38029642-38029661 | None:intergenic | 20.0% |
| !! | AATGCAGTTTATTAATTCTA+TGG | - | chr8_3:38029793-38029812 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTTTTTTAGGGGA+AGG | + | chr8_3:38029942-38029961 | Msa1287500:intron | 20.0% |
| !! | TTATTCAAACAAAAAGGTAA+AGG | - | chr8_3:38030007-38030026 | None:intergenic | 20.0% |
| !! | CTGAAATTATTCAAACAAAA+AGG | - | chr8_3:38030013-38030032 | None:intergenic | 20.0% |
| !! | TTTGTTTGAATAATTTCAGA+TGG | + | chr8_3:38030014-38030033 | Msa1287500:intron | 20.0% |
| !!! | AAATTTGATTTTAGAGTTTG+TGG | - | chr8_3:38028766-38028785 | None:intergenic | 20.0% |
| !! | ATATTTGTCACATCAATTAA+AGG | - | chr8_3:38029161-38029180 | None:intergenic | 20.0% |
| !! | TTGATTCAATTCTTAATTTC+TGG | - | chr8_3:38029290-38029309 | None:intergenic | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | - | chr8_3:38029532-38029551 | None:intergenic | 20.0% |
| !! | GTTGTATTGAAAATTGAAAT+GGG | - | chr8_3:38029568-38029587 | None:intergenic | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | - | chr8_3:38029569-38029588 | None:intergenic | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | - | chr8_3:38029642-38029661 | None:intergenic | 20.0% |
| !! | AATGCAGTTTATTAATTCTA+TGG | - | chr8_3:38029793-38029812 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTTTTTTAGGGGA+AGG | + | chr8_3:38029942-38029961 | Msa1287500:intron | 20.0% |
| !! | TTATTCAAACAAAAAGGTAA+AGG | - | chr8_3:38030007-38030026 | None:intergenic | 20.0% |
| !! | CTGAAATTATTCAAACAAAA+AGG | - | chr8_3:38030013-38030032 | None:intergenic | 20.0% |
| !! | TTTGTTTGAATAATTTCAGA+TGG | + | chr8_3:38030014-38030033 | Msa1287500:intron | 20.0% |
| !!! | GTTTCAACTGTTTTTTTGAT+TGG | - | chr8_3:38028976-38028995 | None:intergenic | 25.0% |
| !! | GTGACAAATATTTGACTTAT+TGG | + | chr8_3:38029170-38029189 | Msa1287500:intron | 25.0% |
| !!! | TGTGTCGGTTTTTTTTTTAT+TGG | + | chr8_3:38029210-38029229 | Msa1287500:intron | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | - | chr8_3:38029533-38029552 | None:intergenic | 25.0% |
| !! | TGAAATGGGTCAATTATTTT+GGG | - | chr8_3:38029554-38029573 | None:intergenic | 25.0% |
| !! | TTGAAATGGGTCAATTATTT+TGG | - | chr8_3:38029555-38029574 | None:intergenic | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | - | chr8_3:38029643-38029662 | None:intergenic | 25.0% |
| !!! | ACACTTTTTTTCCATCAATT+TGG | + | chr8_3:38029825-38029844 | Msa1287500:intron | 25.0% |
| ! | AAAAAACATCAAATGTTTGC+TGG | + | chr8_3:38029901-38029920 | Msa1287500:intron | 25.0% |
| !!! | GTTTCAACTGTTTTTTTGAT+TGG | - | chr8_3:38028976-38028995 | None:intergenic | 25.0% |
| !! | GTGACAAATATTTGACTTAT+TGG | + | chr8_3:38029170-38029189 | Msa1287500:intron | 25.0% |
| !!! | TGTGTCGGTTTTTTTTTTAT+TGG | + | chr8_3:38029210-38029229 | Msa1287500:intron | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | - | chr8_3:38029533-38029552 | None:intergenic | 25.0% |
| !! | TGAAATGGGTCAATTATTTT+GGG | - | chr8_3:38029554-38029573 | None:intergenic | 25.0% |
| !! | TTGAAATGGGTCAATTATTT+TGG | - | chr8_3:38029555-38029574 | None:intergenic | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | - | chr8_3:38029643-38029662 | None:intergenic | 25.0% |
| !!! | ACACTTTTTTTCCATCAATT+TGG | + | chr8_3:38029825-38029844 | Msa1287500:intron | 25.0% |
| ! | AAAAAACATCAAATGTTTGC+TGG | + | chr8_3:38029901-38029920 | Msa1287500:intron | 25.0% |
| !! | CTGAGTAGTATTGATGTTAA+AGG | - | chr8_3:38029049-38029068 | None:intergenic | 30.0% |
| CTTTAACATCAATACTACTC+AGG | + | chr8_3:38029047-38029066 | Msa1287500:CDS | 30.0% | |
| ACTTCTTTGTATGATTGTGT+CGG | + | chr8_3:38029195-38029214 | Msa1287500:intron | 30.0% | |
| TTTCTAGATCTAGTGAGAAA+AGG | + | chr8_3:38029260-38029279 | Msa1287500:intron | 30.0% | |
| TTCTAGATCTAGTGAGAAAA+GGG | + | chr8_3:38029261-38029280 | Msa1287500:intron | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | - | chr8_3:38029658-38029677 | None:intergenic | 30.0% | |
| AAGATGTTACAGAAAAACGT+TGG | + | chr8_3:38029866-38029885 | Msa1287500:intron | 30.0% | |
| ! | AAGAAGTGAAAATCAAGTTG+AGG | - | chr8_3:38030100-38030119 | None:intergenic | 30.0% |
| !! | CTGAGTAGTATTGATGTTAA+AGG | - | chr8_3:38029049-38029068 | None:intergenic | 30.0% |
| CTTTAACATCAATACTACTC+AGG | + | chr8_3:38029047-38029066 | Msa1287500:CDS | 30.0% | |
| ACTTCTTTGTATGATTGTGT+CGG | + | chr8_3:38029195-38029214 | Msa1287500:intron | 30.0% | |
| TTTCTAGATCTAGTGAGAAA+AGG | + | chr8_3:38029260-38029279 | Msa1287500:intron | 30.0% | |
| TTCTAGATCTAGTGAGAAAA+GGG | + | chr8_3:38029261-38029280 | Msa1287500:intron | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | - | chr8_3:38029658-38029677 | None:intergenic | 30.0% | |
| AAGATGTTACAGAAAAACGT+TGG | + | chr8_3:38029866-38029885 | Msa1287500:intron | 30.0% | |
| ! | AAGAAGTGAAAATCAAGTTG+AGG | - | chr8_3:38030100-38030119 | None:intergenic | 30.0% |
| !! | CATCACTTTTGTGTCATTGA+TGG | + | chr8_3:38028828-38028847 | Msa1287500:CDS | 35.0% |
| TTAGGTTTGTAGCACATGAA+GGG | - | chr8_3:38028900-38028919 | None:intergenic | 35.0% | |
| ATTAGGTTTGTAGCACATGA+AGG | - | chr8_3:38028901-38028920 | None:intergenic | 35.0% | |
| GAATTAAGGTAATCAGCACA+TGG | - | chr8_3:38028925-38028944 | None:intergenic | 35.0% | |
| !! | TAGGTGGTTTGGTTGAATTA+AGG | - | chr8_3:38028939-38028958 | None:intergenic | 35.0% |
| TTACATACTGTGTTTGCAAG+TGG | - | chr8_3:38029115-38029134 | None:intergenic | 35.0% | |
| TCTCACTAGATCTAGAAAAC+TGG | - | chr8_3:38029258-38029277 | None:intergenic | 35.0% | |
| TCTAGATCTAGTGAGAAAAG+GGG | + | chr8_3:38029262-38029281 | Msa1287500:intron | 35.0% | |
| TACCATTGCTTCGTTGTATT+TGG | + | chr8_3:38029322-38029341 | Msa1287500:intron | 35.0% | |
| ATCCAAATACAACGAAGCAA+TGG | - | chr8_3:38029327-38029346 | None:intergenic | 35.0% | |
| AGAAAATGGGTCAGTTATTC+CGG | - | chr8_3:38029519-38029538 | None:intergenic | 35.0% | |
| TCTGTGTGAAAAACCAAAGT+AGG | + | chr8_3:38029688-38029707 | Msa1287500:intron | 35.0% | |
| CCAAAGTAGGTCAATTATAC+CGG | + | chr8_3:38029701-38029720 | Msa1287500:intron | 35.0% | |
| CAAAGTAGGTCAATTATACC+GGG | + | chr8_3:38029702-38029721 | Msa1287500:intron | 35.0% | |
| GGTTAATCATAGTGTAGCAA+AGG | - | chr8_3:38029772-38029791 | None:intergenic | 35.0% | |
| ! | AATTTGGTCCATCTGGTTTA+AGG | + | chr8_3:38029841-38029860 | Msa1287500:intron | 35.0% |
| !! | AAGTGAAAATCAAGTTGAGG+AGG | - | chr8_3:38030097-38030116 | None:intergenic | 35.0% |
| !! | CATCACTTTTGTGTCATTGA+TGG | + | chr8_3:38028828-38028847 | Msa1287500:CDS | 35.0% |
| TTAGGTTTGTAGCACATGAA+GGG | - | chr8_3:38028900-38028919 | None:intergenic | 35.0% | |
| ATTAGGTTTGTAGCACATGA+AGG | - | chr8_3:38028901-38028920 | None:intergenic | 35.0% | |
| GAATTAAGGTAATCAGCACA+TGG | - | chr8_3:38028925-38028944 | None:intergenic | 35.0% | |
| !! | TAGGTGGTTTGGTTGAATTA+AGG | - | chr8_3:38028939-38028958 | None:intergenic | 35.0% |
| TTACATACTGTGTTTGCAAG+TGG | - | chr8_3:38029115-38029134 | None:intergenic | 35.0% | |
| TCTCACTAGATCTAGAAAAC+TGG | - | chr8_3:38029258-38029277 | None:intergenic | 35.0% | |
| TCTAGATCTAGTGAGAAAAG+GGG | + | chr8_3:38029262-38029281 | Msa1287500:intron | 35.0% | |
| TACCATTGCTTCGTTGTATT+TGG | + | chr8_3:38029322-38029341 | Msa1287500:intron | 35.0% | |
| ATCCAAATACAACGAAGCAA+TGG | - | chr8_3:38029327-38029346 | None:intergenic | 35.0% | |
| AGAAAATGGGTCAGTTATTC+CGG | - | chr8_3:38029519-38029538 | None:intergenic | 35.0% | |
| TCTGTGTGAAAAACCAAAGT+AGG | + | chr8_3:38029688-38029707 | Msa1287500:intron | 35.0% | |
| CCAAAGTAGGTCAATTATAC+CGG | + | chr8_3:38029701-38029720 | Msa1287500:intron | 35.0% | |
| CAAAGTAGGTCAATTATACC+GGG | + | chr8_3:38029702-38029721 | Msa1287500:intron | 35.0% | |
| GGTTAATCATAGTGTAGCAA+AGG | - | chr8_3:38029772-38029791 | None:intergenic | 35.0% | |
| ! | AATTTGGTCCATCTGGTTTA+AGG | + | chr8_3:38029841-38029860 | Msa1287500:intron | 35.0% |
| !! | AAGTGAAAATCAAGTTGAGG+AGG | - | chr8_3:38030097-38030116 | None:intergenic | 35.0% |
| TTGTGGATCTCTTTCGTGTT+TGG | - | chr8_3:38028749-38028768 | None:intergenic | 40.0% | |
| !! | GTTGATGATCAACACTACAG+AGG | + | chr8_3:38028855-38028874 | Msa1287500:CDS | 40.0% |
| GGTAATCAGCACATGGAATT+AGG | - | chr8_3:38028918-38028937 | None:intergenic | 40.0% | |
| ATTGGATCACAGCAAGAACT+AGG | - | chr8_3:38028958-38028977 | None:intergenic | 40.0% | |
| TGTAATCTCTTCTATGCTCC+TGG | + | chr8_3:38029012-38029031 | Msa1287500:CDS | 40.0% | |
| TTAAAGGTTGCAAGCAAACC+AGG | - | chr8_3:38029033-38029052 | None:intergenic | 40.0% | |
| TTTGCAAGTGGTAAGATCAG+TGG | - | chr8_3:38029103-38029122 | None:intergenic | 40.0% | |
| ATGCCTAATTGCTAAGAGTG+TGG | + | chr8_3:38029443-38029462 | Msa1287500:intron | 40.0% | |
| GAAAATGGGTCAGTTATTCC+GGG | - | chr8_3:38029518-38029537 | None:intergenic | 40.0% | |
| CCGGTATAATTGACCTACTT+TGG | - | chr8_3:38029704-38029723 | None:intergenic | 40.0% | |
| AAATATTACTACCTCCGTCC+CGG | - | chr8_3:38029723-38029742 | None:intergenic | 40.0% | |
| TTCCATCAATTTGGTCCATC+TGG | + | chr8_3:38029834-38029853 | Msa1287500:intron | 40.0% | |
| AACCAGATGGACCAAATTGA+TGG | - | chr8_3:38029839-38029858 | None:intergenic | 40.0% | |
| !! | CATCTTAGCCTTAAACCAGA+TGG | - | chr8_3:38029852-38029871 | None:intergenic | 40.0% |
| ATGTGAAGAAGCTTCTTACC+CGG | - | chr8_3:38030074-38030093 | None:intergenic | 40.0% | |
| TTGTGGATCTCTTTCGTGTT+TGG | - | chr8_3:38028749-38028768 | None:intergenic | 40.0% | |
| !! | GTTGATGATCAACACTACAG+AGG | + | chr8_3:38028855-38028874 | Msa1287500:CDS | 40.0% |
| GGTAATCAGCACATGGAATT+AGG | - | chr8_3:38028918-38028937 | None:intergenic | 40.0% | |
| ATTGGATCACAGCAAGAACT+AGG | - | chr8_3:38028958-38028977 | None:intergenic | 40.0% | |
| TGTAATCTCTTCTATGCTCC+TGG | + | chr8_3:38029012-38029031 | Msa1287500:CDS | 40.0% | |
| TTAAAGGTTGCAAGCAAACC+AGG | - | chr8_3:38029033-38029052 | None:intergenic | 40.0% | |
| TTTGCAAGTGGTAAGATCAG+TGG | - | chr8_3:38029103-38029122 | None:intergenic | 40.0% | |
| ATGCCTAATTGCTAAGAGTG+TGG | + | chr8_3:38029443-38029462 | Msa1287500:intron | 40.0% | |
| GAAAATGGGTCAGTTATTCC+GGG | - | chr8_3:38029518-38029537 | None:intergenic | 40.0% | |
| CCGGTATAATTGACCTACTT+TGG | - | chr8_3:38029704-38029723 | None:intergenic | 40.0% | |
| AAATATTACTACCTCCGTCC+CGG | - | chr8_3:38029723-38029742 | None:intergenic | 40.0% | |
| TTCCATCAATTTGGTCCATC+TGG | + | chr8_3:38029834-38029853 | Msa1287500:intron | 40.0% | |
| AACCAGATGGACCAAATTGA+TGG | - | chr8_3:38029839-38029858 | None:intergenic | 40.0% | |
| !! | CATCTTAGCCTTAAACCAGA+TGG | - | chr8_3:38029852-38029871 | None:intergenic | 40.0% |
| ATGTGAAGAAGCTTCTTACC+CGG | - | chr8_3:38030074-38030093 | None:intergenic | 40.0% | |
| ! | GATCTCTTTCGTGTTTGGTG+AGG | - | chr8_3:38028744-38028763 | None:intergenic | 45.0% |
| ACAGCAAGAACTAGGTGGTT+TGG | - | chr8_3:38028950-38028969 | None:intergenic | 45.0% | |
| CCACCACACTCTTAGCAATT+AGG | - | chr8_3:38029449-38029468 | None:intergenic | 45.0% | |
| ! | CCTAATTGCTAAGAGTGTGG+TGG | + | chr8_3:38029446-38029465 | Msa1287500:intron | 45.0% |
| GTAGGTCAATTATACCGGGA+CGG | + | chr8_3:38029706-38029725 | Msa1287500:intron | 45.0% | |
| ! | GATCTCTTTCGTGTTTGGTG+AGG | - | chr8_3:38028744-38028763 | None:intergenic | 45.0% |
| ACAGCAAGAACTAGGTGGTT+TGG | - | chr8_3:38028950-38028969 | None:intergenic | 45.0% | |
| CCACCACACTCTTAGCAATT+AGG | - | chr8_3:38029449-38029468 | None:intergenic | 45.0% | |
| ! | CCTAATTGCTAAGAGTGTGG+TGG | + | chr8_3:38029446-38029465 | Msa1287500:intron | 45.0% |
| GTAGGTCAATTATACCGGGA+CGG | + | chr8_3:38029706-38029725 | Msa1287500:intron | 45.0% | |
| GGATCACAGCAAGAACTAGG+TGG | - | chr8_3:38028955-38028974 | None:intergenic | 50.0% | |
| CTTGCGTTGAGTCGTAACTG+TGG | + | chr8_3:38029072-38029091 | Msa1287500:CDS | 50.0% | |
| CTAAATTACTCCCTCCGTCC+CGG | + | chr8_3:38029497-38029516 | Msa1287500:intron | 50.0% | |
| ATGGGTCAGTTATTCCGGGA+CGG | - | chr8_3:38029514-38029533 | None:intergenic | 50.0% | |
| AAGAAGCTTCTTACCCGGTG+GGG | - | chr8_3:38030069-38030088 | None:intergenic | 50.0% | |
| GAAGAAGCTTCTTACCCGGT+GGG | - | chr8_3:38030070-38030089 | None:intergenic | 50.0% | |
| TGAAGAAGCTTCTTACCCGG+TGG | - | chr8_3:38030071-38030090 | None:intergenic | 50.0% | |
| GGATCACAGCAAGAACTAGG+TGG | - | chr8_3:38028955-38028974 | None:intergenic | 50.0% | |
| CTTGCGTTGAGTCGTAACTG+TGG | + | chr8_3:38029072-38029091 | Msa1287500:CDS | 50.0% | |
| CTAAATTACTCCCTCCGTCC+CGG | + | chr8_3:38029497-38029516 | Msa1287500:intron | 50.0% | |
| ATGGGTCAGTTATTCCGGGA+CGG | - | chr8_3:38029514-38029533 | None:intergenic | 50.0% | |
| AAGAAGCTTCTTACCCGGTG+GGG | - | chr8_3:38030069-38030088 | None:intergenic | 50.0% | |
| GAAGAAGCTTCTTACCCGGT+GGG | - | chr8_3:38030070-38030089 | None:intergenic | 50.0% | |
| TGAAGAAGCTTCTTACCCGG+TGG | - | chr8_3:38030071-38030090 | None:intergenic | 50.0% | |
| GTCAGTTATTCCGGGACGGA+GGG | - | chr8_3:38029510-38029529 | None:intergenic | 55.0% | |
| GGTCAATTATACCGGGACGG+AGG | + | chr8_3:38029709-38029728 | Msa1287500:intron | 55.0% | |
| TCAGCTCCAGCTCCTACTTC+CGG | + | chr8_3:38030038-38030057 | Msa1287500:CDS | 55.0% | |
| GTCAGTTATTCCGGGACGGA+GGG | - | chr8_3:38029510-38029529 | None:intergenic | 55.0% | |
| GGTCAATTATACCGGGACGG+AGG | + | chr8_3:38029709-38029728 | Msa1287500:intron | 55.0% | |
| TCAGCTCCAGCTCCTACTTC+CGG | + | chr8_3:38030038-38030057 | Msa1287500:CDS | 55.0% | |
| GGTCAGTTATTCCGGGACGG+AGG | - | chr8_3:38029511-38029530 | None:intergenic | 60.0% | |
| GGTCAGTTATTCCGGGACGG+AGG | - | chr8_3:38029511-38029530 | None:intergenic | 60.0% | |
| GCTCCAGCTCCTACTTCCGG+CGG | + | chr8_3:38030041-38030060 | Msa1287500:CDS | 65.0% | |
| CTCCAGCTCCTACTTCCGGC+GGG | + | chr8_3:38030042-38030061 | Msa1287500:CDS | 65.0% | |
| GCTCCAGCTCCTACTTCCGG+CGG | + | chr8_3:38030041-38030060 | Msa1287500:CDS | 65.0% | |
| CTCCAGCTCCTACTTCCGGC+GGG | + | chr8_3:38030042-38030061 | Msa1287500:CDS | 65.0% | |
| GACCCGCCGGAAGTAGGAGC+TGG | - | chr8_3:38030047-38030066 | None:intergenic | 70.0% | |
| TACTTCCGGCGGGTCCCCAC+CGG | + | chr8_3:38030052-38030071 | Msa1287500:CDS | 70.0% | |
| GACCCGCCGGAAGTAGGAGC+TGG | - | chr8_3:38030047-38030066 | None:intergenic | 70.0% | |
| TACTTCCGGCGGGTCCCCAC+CGG | + | chr8_3:38030052-38030071 | Msa1287500:CDS | 70.0% | |
| GGTGGGGACCCGCCGGAAGT+AGG | - | chr8_3:38030053-38030072 | None:intergenic | 75.0% | |
| ACTTCCGGCGGGTCCCCACC+GGG | + | chr8_3:38030053-38030072 | Msa1287500:CDS | 75.0% | |
| CTTACCCGGTGGGGACCCGC+CGG | - | chr8_3:38030060-38030079 | None:intergenic | 75.0% | |
| GGTGGGGACCCGCCGGAAGT+AGG | - | chr8_3:38030053-38030072 | None:intergenic | 75.0% | |
| ACTTCCGGCGGGTCCCCACC+GGG | + | chr8_3:38030053-38030072 | Msa1287500:CDS | 75.0% | |
| CTTACCCGGTGGGGACCCGC+CGG | - | chr8_3:38030060-38030079 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 38028678 | 38030148 | 38028678 | ID=Msa1287500;Name=Msa1287500 |
| chr8_3 | mRNA | 38028678 | 38030148 | 38028678 | ID=Msa1287500-mRNA-1;Parent=Msa1287500;Name=Msa1287500-mRNA-1;_AED=0.01;_eAED=0.01;_QI=133|1|0.5|1|1|1|2|0|143 |
| chr8_3 | exon | 38028678 | 38029126 | 38028678 | ID=Msa1287500-mRNA-1:exon:10881;Parent=Msa1287500-mRNA-1 |
| chr8_3 | exon | 38030033 | 38030148 | 38030033 | ID=Msa1287500-mRNA-1:exon:10882;Parent=Msa1287500-mRNA-1 |
| chr8_3 | five_prime_UTR | 38028678 | 38028810 | 38028678 | ID=Msa1287500-mRNA-1:five_prime_utr;Parent=Msa1287500-mRNA-1 |
| chr8_3 | CDS | 38028811 | 38029126 | 38028811 | ID=Msa1287500-mRNA-1:cds;Parent=Msa1287500-mRNA-1 |
| chr8_3 | CDS | 38030033 | 38030148 | 38030033 | ID=Msa1287500-mRNA-1:cds;Parent=Msa1287500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
