Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0797720 | XP_003611561.1 | 93.987 | 632 | 14 | 3 | 1 | 631 | 1 | 609 | 0.0 | 1203 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0797720 | sp|B5X4Z4|NAGS2_ARATH | 64.045 | 623 | 180 | 9 | 15 | 623 | 18 | 610 | 0.0 | 783 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0797720 | G7K2G8 | 93.987 | 632 | 14 | 3 | 1 | 631 | 1 | 609 | 0.0 | 1203 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0797720 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0787750 | Msa0797720 | 0.824620 | 7.315271e-54 | -8.615850e-47 |
| Msa0238890 | Msa0797720 | 0.811292 | 7.530806e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0797720 | MtrunA17_Chr5g0401051 | 92.247 | 632 | 14 | 3 | 1 | 631 | 1 | 598 | 0.0 | 1177 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0797720 | AT4G37670.2 | 64.045 | 623 | 180 | 9 | 15 | 623 | 18 | 610 | 0.0 | 783 |
| Msa0797720 | AT2G22910.1 | 67.395 | 549 | 154 | 3 | 78 | 623 | 75 | 601 | 0.0 | 754 |
| Msa0797720 | AT4G37670.1 | 62.635 | 554 | 163 | 9 | 15 | 554 | 18 | 541 | 0.0 | 668 |
Find 153 sgRNAs with CRISPR-Local
Find 305 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAGCTTGTGCCTTGGCAAT+TGG | 0.248266 | 5_3:+9945981 | Msa0797720:CDS |
| GATGAAGTGGTGAAGTTGAT+AGG | 0.250695 | 5_3:-9943937 | None:intergenic |
| ACAGTAATTCCACTCTTATT+TGG | 0.256128 | 5_3:-9948563 | None:intergenic |
| TCTCCTCAGGGTAAGGAAAA+AGG | 0.290072 | 5_3:-9947605 | None:intergenic |
| CAGCTTGTGCCTTGGCAATT+GGG | 0.298414 | 5_3:+9945982 | Msa0797720:CDS |
| ATCCACTTTGTTATTGTTCC+TGG | 0.304270 | 5_3:+9944596 | Msa0797720:CDS |
| GGTCCAATACTTGATGAAAA+TGG | 0.316810 | 5_3:+9946032 | Msa0797720:CDS |
| GACAACATTCTCAAAGATAA+AGG | 0.329004 | 5_3:+9944635 | Msa0797720:CDS |
| AGCGAGCAAGGCTTTGCTAT+TGG | 0.336026 | 5_3:+9946296 | Msa0797720:CDS |
| TTAAAATTGTTATGCTCAAC+AGG | 0.336039 | 5_3:-9946170 | None:intergenic |
| TGAAATATGTGCAGATTATA+TGG | 0.338432 | 5_3:+9948193 | Msa0797720:intron |
| CAAACAACTTATTCAGCCTT+TGG | 0.343314 | 5_3:+9947368 | Msa0797720:CDS |
| TAAAGGAGCGAGGTTTGAAT+TGG | 0.357227 | 5_3:-9944002 | None:intergenic |
| TTGGAATTGTTTACAAGAGA+TGG | 0.378945 | 5_3:+9946744 | Msa0797720:CDS |
| TTCGTTCCCTTCGTGAAGCT+TGG | 0.379069 | 5_3:+9944136 | Msa0797720:CDS |
| AGCTGCTATTTCACTTTGCT+CGG | 0.382328 | 5_3:-9946111 | None:intergenic |
| TTGTTGGATGGCACTATTAG+TGG | 0.387463 | 5_3:+9946711 | Msa0797720:CDS |
| GCAGTCAAATCTCCACCTAA+TGG | 0.388073 | 5_3:+9946197 | Msa0797720:CDS |
| GGAATTGATTATGGGTCAAC+TGG | 0.390661 | 5_3:+9945557 | Msa0797720:CDS |
| CATATAATACTTAGAATTGC+GGG | 0.398277 | 5_3:-9948528 | None:intergenic |
| TTTGAGAATGGAGATGGCTT+AGG | 0.403018 | 5_3:+9946269 | Msa0797720:CDS |
| AATTGTTGATAGTCCTTCCT+TGG | 0.403941 | 5_3:+9944212 | Msa0797720:CDS |
| TTTGGAGGCATGTGGCATAC+TGG | 0.410523 | 5_3:+9947386 | Msa0797720:CDS |
| GCAATTTGTCTCCCTGTCCT+TGG | 0.413662 | 5_3:-9947674 | None:intergenic |
| TGTCCTTGGCCACGGCAATC+AGG | 0.420559 | 5_3:-9947660 | None:intergenic |
| ATGACTAAGGTTTGAATTGT+GGG | 0.427626 | 5_3:-9948815 | None:intergenic |
| ACCTCTGCACACTTCTCCTC+AGG | 0.437888 | 5_3:-9947618 | None:intergenic |
| GTGGTCGGTGGAATTGATTA+TGG | 0.441744 | 5_3:+9945548 | Msa0797720:CDS |
| TGATTGCCGTGGCCAAGGAC+AGG | 0.445582 | 5_3:+9947662 | Msa0797720:CDS |
| GTTGGATAATTTCGTTGTTG+TGG | 0.449871 | 5_3:+9947551 | Msa0797720:CDS |
| TTCTTTCTCCAGCACCTATG+AGG | 0.453361 | 5_3:+9945953 | Msa0797720:intron |
| TCAATTTGCACATGGGTGCC+AGG | 0.453790 | 5_3:-9944614 | None:intergenic |
| ACAAGCTGTTGCAACCTCAT+AGG | 0.454255 | 5_3:-9945967 | None:intergenic |
| ATGTCTACGAATATTGCATA+TGG | 0.454955 | 5_3:-9945328 | None:intergenic |
| TTGTAGCTCGAATCTGTGTT+TGG | 0.456577 | 5_3:+9948703 | Msa0797720:three_prime_UTR |
| ATTCAATACTTCACCAGAGC+TGG | 0.458082 | 5_3:-9945663 | None:intergenic |
| GAACGTCTAAGTCGAATGAA+TGG | 0.458588 | 5_3:+9946326 | Msa0797720:CDS |
| GTGAAAGCGGTTGAGGAAGA+AGG | 0.459644 | 5_3:+9946140 | Msa0797720:CDS |
| GTGGTGAAGTTGATAGGGTT+TGG | 0.465407 | 5_3:-9943931 | None:intergenic |
| CGCATGCGTGAGAGACTTGA+TGG | 0.466167 | 5_3:+9945605 | Msa0797720:CDS |
| GAGAAGAAAGCAGCATCTCT+TGG | 0.466675 | 5_3:+9948215 | Msa0797720:CDS |
| GGTTCAAAGAGTTCACTTGT+TGG | 0.467382 | 5_3:+9946695 | Msa0797720:CDS |
| TTGAGAATGGAGATGGCTTA+GGG | 0.472572 | 5_3:+9946270 | Msa0797720:CDS |
| TCGAATCTGTGTTTGGTACC+AGG | 0.482437 | 5_3:+9948710 | Msa0797720:three_prime_UTR |
| ATGAAGTGGTGAAGTTGATA+GGG | 0.485825 | 5_3:-9943936 | None:intergenic |
| GGAGCAAGGCTAAGTATGTT+GGG | 0.485838 | 5_3:+9945208 | Msa0797720:CDS |
| TAACTATGTGAAAGCGGTTG+AGG | 0.486501 | 5_3:+9946133 | Msa0797720:CDS |
| AAGAGTGGAATTACTGTTGG+TGG | 0.488225 | 5_3:+9948569 | Msa0797720:CDS |
| GAATGGGTACCTGTCAGAAT+TGG | 0.488645 | 5_3:+9946343 | Msa0797720:CDS |
| GGGAGCAAGGCTAAGTATGT+TGG | 0.490609 | 5_3:+9945207 | Msa0797720:intron |
| TGGTAACTTTCTTGCAGCCA+AGG | 0.491225 | 5_3:+9945395 | Msa0797720:CDS |
| AGCTTGTGCCTTGGCAATTG+GGG | 0.494564 | 5_3:+9945983 | Msa0797720:CDS |
| CAAGAGGCAAGAAACGAATC+AGG | 0.494769 | 5_3:-9946058 | None:intergenic |
| GCACACTTCTCCTCAGGGTA+AGG | 0.495453 | 5_3:-9947612 | None:intergenic |
| CATGACTAAGGTTTGAATTG+TGG | 0.496054 | 5_3:-9948816 | None:intergenic |
| AACGCTGCAATGTGTGCAGC+AGG | 0.498191 | 5_3:+9945261 | Msa0797720:CDS |
| AAGTTAATATGCGTTATAGA+TGG | 0.498769 | 5_3:+9946011 | Msa0797720:CDS |
| CAAAGAGTTCACTTGTTGGA+TGG | 0.500446 | 5_3:+9946699 | Msa0797720:CDS |
| ACAACTTATTCAGCCTTTGG+AGG | 0.501598 | 5_3:+9947371 | Msa0797720:CDS |
| CTACGATAAGCGAGAAGATA+AGG | 0.502922 | 5_3:-9944159 | None:intergenic |
| AACATGTCTGCTTCTTCAAG+AGG | 0.505053 | 5_3:-9946074 | None:intergenic |
| ATTGTTTACAAGAGATGGGA+TGG | 0.511266 | 5_3:+9946749 | Msa0797720:CDS |
| TGCATGCCTTGCCTTGAGAA+TGG | 0.515106 | 5_3:-9944238 | None:intergenic |
| TTTGAATTGTGGGCAGGACA+AGG | 0.516611 | 5_3:-9948805 | None:intergenic |
| TCTCCTGATTGCCGTGGCCA+AGG | 0.518719 | 5_3:+9947657 | Msa0797720:CDS |
| AACGTCTAAGTCGAATGAAT+GGG | 0.522685 | 5_3:+9946327 | Msa0797720:CDS |
| TGGAATTGTTTACAAGAGAT+GGG | 0.523017 | 5_3:+9946745 | Msa0797720:CDS |
| AACTTGGGCTACTCCAGCTC+TGG | 0.523097 | 5_3:+9945650 | Msa0797720:CDS |
| CTGCTGTACGTGTTGTAAGT+AGG | 0.526017 | 5_3:-9948253 | None:intergenic |
| GGATGGGAACAATGGTGGCT+AGG | 0.526598 | 5_3:+9946766 | Msa0797720:CDS |
| GGTAAGTGTGATTGGAAGCA+TGG | 0.528087 | 5_3:+9948636 | Msa0797720:three_prime_UTR |
| TTCGTTGTTGTGGAAAGAGA+AGG | 0.528576 | 5_3:+9947561 | Msa0797720:CDS |
| GAGCAAGGCTTTGCTATTGG+AGG | 0.529772 | 5_3:+9946299 | Msa0797720:CDS |
| TGGTCGGTGGAATTGATTAT+GGG | 0.530856 | 5_3:+9945549 | Msa0797720:CDS |
| GCATGCCTTGCCTTGAGAAT+GGG | 0.531576 | 5_3:-9944237 | None:intergenic |
| TGAAGTTGATAGGGTTTGGA+AGG | 0.532697 | 5_3:-9943927 | None:intergenic |
| GTATAGAGGCGCGATAAAGA+AGG | 0.534931 | 5_3:-9943901 | None:intergenic |
| CTGCAGCAGCCAATTCTGAC+AGG | 0.535179 | 5_3:-9946352 | None:intergenic |
| TGTCTCCCTGTCCTTGGCCA+CGG | 0.535217 | 5_3:-9947668 | None:intergenic |
| TTCCTTGGATCCCATTCTCA+AGG | 0.535248 | 5_3:+9944227 | Msa0797720:CDS |
| CTTGACAGGTTTGTGAGGCG+TGG | 0.536755 | 5_3:+9948446 | Msa0797720:intron |
| TGCCTTGAGAATGGGATCCA+AGG | 0.538874 | 5_3:-9944229 | None:intergenic |
| CTAAGGTTTGAATTGTGGGC+AGG | 0.541457 | 5_3:-9948811 | None:intergenic |
| ATAGCAGCTAAACTTTCAGT+TGG | 0.541876 | 5_3:+9945300 | Msa0797720:CDS |
| GCAACTTTCCACAATGGTGT+TGG | 0.543734 | 5_3:+9946245 | Msa0797720:CDS |
| AATTGGAGATTAAGTTGTTG+TGG | 0.543807 | 5_3:-9943985 | None:intergenic |
| TCATATAATACTTAGAATTG+CGG | 0.547939 | 5_3:-9948529 | None:intergenic |
| TTTATAGCTGCTACAAACGT+TGG | 0.550580 | 5_3:+9947533 | Msa0797720:intron |
| CACAATTCAAACCTTAGTCA+TGG | 0.553441 | 5_3:+9948817 | Msa0797720:three_prime_UTR |
| GATTGCCGTGGCCAAGGACA+GGG | 0.553924 | 5_3:+9947663 | Msa0797720:CDS |
| ACTCCTCAACTCCATGACTA+AGG | 0.559553 | 5_3:-9948828 | None:intergenic |
| GGCTTAGGGACTAGCGAGCA+AGG | 0.560101 | 5_3:+9946284 | Msa0797720:CDS |
| TCGAGCTACAAGATTGTCAC+GGG | 0.560518 | 5_3:-9948691 | None:intergenic |
| TTACAACACGTACAGCAGAT+TGG | 0.561074 | 5_3:+9948258 | Msa0797720:CDS |
| CAATAACAAAGTGGATTCCA+AGG | 0.563812 | 5_3:-9944589 | None:intergenic |
| GTGAACGGAATCACTGAAGA+AGG | 0.566221 | 5_3:+9944093 | Msa0797720:CDS |
| AGAAATGACGAGAACAAAAG+TGG | 0.566415 | 5_3:-9944184 | None:intergenic |
| ATGGAAAACGCATTACAGAA+TGG | 0.566481 | 5_3:+9946216 | Msa0797720:CDS |
| GGTTTGGAAGGGAAGTATAG+AGG | 0.566532 | 5_3:-9943915 | None:intergenic |
| TTGTGCCTTGGCAATTGGGG+CGG | 0.568264 | 5_3:+9945986 | Msa0797720:CDS |
| AACTTCTTGACAGGTTTGTG+AGG | 0.570293 | 5_3:+9948441 | Msa0797720:intron |
| GGACAGGGAGACAAATTGCT+TGG | 0.571020 | 5_3:+9947678 | Msa0797720:CDS |
| AGACATGTTAATTCGCAAGC+GGG | 0.573614 | 5_3:+9946088 | Msa0797720:CDS |
| GAATTGATTATGGGTCAACT+GGG | 0.574055 | 5_3:+9945558 | Msa0797720:CDS |
| GGTTAAGCGGTCTGATGAAG+AGG | 0.575532 | 5_3:+9947407 | Msa0797720:CDS |
| GTGGATTGAAGTGAGAGTAT+TGG | 0.576704 | 5_3:-9943966 | None:intergenic |
| TTGAACAACGAAGGAGTGAA+CGG | 0.576908 | 5_3:+9944078 | Msa0797720:CDS |
| GTAAGTGTGATTGGAAGCAT+GGG | 0.577212 | 5_3:+9948637 | Msa0797720:three_prime_UTR |
| CAGAGAAGAGGGGTGGTCGG+TGG | 0.577629 | 5_3:+9945536 | Msa0797720:intron |
| CCTTTCGAGTGCCTTCGTAA+AGG | 0.580703 | 5_3:-9947320 | None:intergenic |
| AGCAGCTAACTATGTGAAAG+CGG | 0.584271 | 5_3:+9946127 | Msa0797720:CDS |
| AATAAGAGTGGAATTACTGT+TGG | 0.587427 | 5_3:+9948566 | Msa0797720:CDS |
| TGGATCCCATTCTCAAGGCA+AGG | 0.589872 | 5_3:+9944232 | Msa0797720:CDS |
| CTTGTCCGCCCCAATTGCCA+AGG | 0.592760 | 5_3:-9945991 | None:intergenic |
| TGACAGAGAAGAGGGGTGGT+CGG | 0.595410 | 5_3:+9945533 | Msa0797720:intron |
| TTGAGAATGGGATCCAAGGA+AGG | 0.595569 | 5_3:-9944225 | None:intergenic |
| TTGAATTGTGGGCAGGACAA+GGG | 0.600713 | 5_3:-9948804 | None:intergenic |
| ATTCAGCCTTTGGAGGCATG+TGG | 0.604861 | 5_3:+9947378 | Msa0797720:CDS |
| AACGAGGAATTAAAGGAGCG+AGG | 0.605298 | 5_3:-9944012 | None:intergenic |
| ATATGCAATATTCGTAGACA+TGG | 0.605536 | 5_3:+9945330 | Msa0797720:CDS |
| ACAACAGATTTACAATACAA+AGG | 0.606913 | 5_3:-9948753 | None:intergenic |
| GGTTGCAACAGCTTGTGCCT+TGG | 0.608428 | 5_3:+9945974 | Msa0797720:CDS |
| CTACGAATATTGCATATGGA+AGG | 0.610959 | 5_3:-9945324 | None:intergenic |
| AAGAGATGGGATGGGAACAA+TGG | 0.612647 | 5_3:+9946758 | Msa0797720:CDS |
| TTGTTTACAAGAGATGGGAT+GGG | 0.612686 | 5_3:+9946750 | Msa0797720:CDS |
| GTATTGGCGAGAAGATGAAG+TGG | 0.613696 | 5_3:-9943950 | None:intergenic |
| CGCAATGCGTTGAACAACGA+AGG | 0.616719 | 5_3:+9944069 | Msa0797720:CDS |
| TACTGCGTTTACAGGGAGCA+AGG | 0.617201 | 5_3:+9945194 | Msa0797720:intron |
| GAAGTTGATAGGGTTTGGAA+GGG | 0.618757 | 5_3:-9943926 | None:intergenic |
| TCTCAAAACCAACACCATTG+TGG | 0.620130 | 5_3:-9946253 | None:intergenic |
| TTCGAGCTACAAGATTGTCA+CGG | 0.621464 | 5_3:-9948692 | None:intergenic |
| AAGCTTCTACCAAATAAGAG+TGG | 0.625840 | 5_3:+9948554 | Msa0797720:CDS |
| AGATGGGATGGGAACAATGG+TGG | 0.628080 | 5_3:+9946761 | Msa0797720:CDS |
| GAATGTTGTCAATTTGCACA+TGG | 0.630324 | 5_3:-9944622 | None:intergenic |
| AGAGCTGGAGTAGCCCAAGT+TGG | 0.630783 | 5_3:-9945648 | None:intergenic |
| AGTATGCCACATGCCTCCAA+AGG | 0.632526 | 5_3:-9947384 | None:intergenic |
| CATGTGGCATACTGGTTAAG+CGG | 0.633218 | 5_3:+9947394 | Msa0797720:CDS |
| CAGACATGTTAATTCGCAAG+CGG | 0.635149 | 5_3:+9946087 | Msa0797720:CDS |
| GCAGTATCTCCTGATTGCCG+TGG | 0.635516 | 5_3:+9947651 | Msa0797720:CDS |
| GAAGGTCAAATAATTGCATG+TGG | 0.638311 | 5_3:+9947579 | Msa0797720:CDS |
| AATGCTACATGTCGAAGACC+TGG | 0.640649 | 5_3:-9948728 | None:intergenic |
| CCTCTGCACACTTCTCCTCA+GGG | 0.642147 | 5_3:-9947617 | None:intergenic |
| CCTTTACGAAGGCACTCGAA+AGG | 0.642671 | 5_3:+9947320 | Msa0797720:CDS |
| GCTGCAATGTGTGCAGCAGG+AGG | 0.644204 | 5_3:+9945264 | Msa0797720:CDS |
| CCCTGAGGAGAAGTGTGCAG+AGG | 0.655036 | 5_3:+9947617 | Msa0797720:CDS |
| GGTCAAATAATTGCATGTGG+TGG | 0.656987 | 5_3:+9947582 | Msa0797720:CDS |
| GTTAGTGTCAGTGTTACAAG+TGG | 0.659841 | 5_3:+9945375 | Msa0797720:CDS |
| TGCCAGGAACAATAACAAAG+TGG | 0.667425 | 5_3:-9944598 | None:intergenic |
| CATAATGCAACTTTCCACAA+TGG | 0.674650 | 5_3:+9946239 | Msa0797720:CDS |
| ATAAGGCCAAGCTTCACGAA+GGG | 0.694309 | 5_3:-9944142 | None:intergenic |
| AATGTTGTCAATTTGCACAT+GGG | 0.704234 | 5_3:-9944621 | None:intergenic |
| AATTGATTATGGGTCAACTG+GGG | 0.744930 | 5_3:+9945559 | Msa0797720:CDS |
| ATGCGTGAGAGACTTGATGG+TGG | 0.746452 | 5_3:+9945608 | Msa0797720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAAATAATAAAAGCAAA+AGG | - | chr5_3:9944452-9944471 | None:intergenic | 10.0% |
| !! | TATATTATATTAAAAAGATG+TGG | - | chr5_3:9948169-9948188 | None:intergenic | 10.0% |
| !! | GAAAATTAAAAGATATAACA+TGG | - | chr5_3:9946398-9946417 | None:intergenic | 15.0% |
| !! | TTGAAATTATTTGTAAATGA+TGG | + | chr5_3:9947721-9947740 | Msa0797720:intron | 15.0% |
| !!! | TAATAATTTGTTCTATGTAT+TGG | + | chr5_3:9947759-9947778 | Msa0797720:intron | 15.0% |
| !!! | AATAATTTGTTCTATGTATT+GGG | + | chr5_3:9947760-9947779 | Msa0797720:intron | 15.0% |
| !! | AAAATAATAAAAGCAAAAGG+TGG | - | chr5_3:9944449-9944468 | None:intergenic | 20.0% |
| !! | TCAAAGAAGTGATTATATTT+AGG | + | chr5_3:9944996-9945015 | Msa0797720:intron | 20.0% |
| !! | CAAAGAAGTGATTATATTTA+GGG | + | chr5_3:9944997-9945016 | Msa0797720:intron | 20.0% |
| !!! | TATAGTTATTTTAACCAACT+TGG | + | chr5_3:9945634-9945653 | Msa0797720:CDS | 20.0% |
| !!! | ATAGTTATTTTAACCAACTT+GGG | + | chr5_3:9945635-9945654 | Msa0797720:CDS | 20.0% |
| !!! | AATAAAACATCATAGGTTTT+TGG | - | chr5_3:9947223-9947242 | None:intergenic | 20.0% |
| !!! | AATTATTTGTAAATGATGGA+TGG | + | chr5_3:9947725-9947744 | Msa0797720:intron | 20.0% |
| !!! | TTTTCAAGAAGATATTTTTC+AGG | + | chr5_3:9948071-9948090 | Msa0797720:intron | 20.0% |
| !!! | TGTATAATTTTAATCATCGA+AGG | + | chr5_3:9948121-9948140 | Msa0797720:intron | 20.0% |
| !!! | AAGACAAGTTTTTTGTTTAA+AGG | + | chr5_3:9948348-9948367 | Msa0797720:intron | 20.0% |
| !!! | ATTGTTTTCTTTTTCTTTTC+AGG | - | chr5_3:9948500-9948519 | None:intergenic | 20.0% |
| !! | TCATATAATACTTAGAATTG+CGG | - | chr5_3:9948532-9948551 | None:intergenic | 20.0% |
| !!! | TTGCGATTATCTTTTTTGTT+AGG | + | chr5_3:9944268-9944287 | Msa0797720:CDS | 25.0% |
| !! | GCTTCAATTAGAATCAATTT+TGG | - | chr5_3:9944344-9944363 | None:intergenic | 25.0% |
| !!! | TTAGTTTTAGTTGTTTGTGT+TGG | + | chr5_3:9944516-9944535 | Msa0797720:intron | 25.0% |
| ! | TTAGTAACAGTAATGTTTCT+GGG | + | chr5_3:9944541-9944560 | Msa0797720:intron | 25.0% |
| ! | TCAGTAGATAAGTTCAAATA+AGG | - | chr5_3:9944691-9944710 | None:intergenic | 25.0% |
| !! | TTAAGCACTTAATACTGTTT+TGG | + | chr5_3:9944712-9944731 | Msa0797720:intron | 25.0% |
| ! | AATAAGCTGAAAAAAGCTTA+TGG | - | chr5_3:9944801-9944820 | None:intergenic | 25.0% |
| ! | TGAATCATAAAATCAAACCT+TGG | - | chr5_3:9945415-9945434 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTGACAGAGAAG+AGG | + | chr5_3:9945524-9945543 | Msa0797720:intron | 25.0% |
| !!! | TTTTTTTTTGACAGAGAAGA+GGG | + | chr5_3:9945525-9945544 | Msa0797720:intron | 25.0% |
| !!! | ATCTGATATGTACTTTTTCT+AGG | + | chr5_3:9945811-9945830 | Msa0797720:intron | 25.0% |
| ! | AAGTTAATATGCGTTATAGA+TGG | + | chr5_3:9946011-9946030 | Msa0797720:CDS | 25.0% |
| ! | TTAAAATTGTTATGCTCAAC+AGG | - | chr5_3:9946173-9946192 | None:intergenic | 25.0% |
| !! | GTTGAGCATAACAATTTTAA+CGG | + | chr5_3:9946173-9946192 | Msa0797720:CDS | 25.0% |
| !!! | TTGAGCATAACAATTTTAAC+GGG | + | chr5_3:9946174-9946193 | Msa0797720:CDS | 25.0% |
| ! | ATCAATATCAGACCAATAAT+AGG | + | chr5_3:9946495-9946514 | Msa0797720:intron | 25.0% |
| !!! | TATTAGTGGAGTTTTATTGT+TGG | + | chr5_3:9946725-9946744 | Msa0797720:CDS | 25.0% |
| !!! | TTGCAAGTTATTTTGTTCAA+GGG | + | chr5_3:9946830-9946849 | Msa0797720:intron | 25.0% |
| ! | TAAAAGCTAAAACAACTTCA+AGG | - | chr5_3:9946904-9946923 | None:intergenic | 25.0% |
| ! | TAACTAATGGTTTCTTGAAA+GGG | - | chr5_3:9947062-9947081 | None:intergenic | 25.0% |
| !!! | TCGATCTTTTTTGTAACTAA+TGG | - | chr5_3:9947075-9947094 | None:intergenic | 25.0% |
| ! | TTAGTTACAAAAAAGATCGA+AGG | + | chr5_3:9947075-9947094 | Msa0797720:intron | 25.0% |
| !!! | TTCTACACTTTTAAGTATGT+GGG | - | chr5_3:9947247-9947266 | None:intergenic | 25.0% |
| !!! | TTTCTACACTTTTAAGTATG+TGG | - | chr5_3:9947248-9947267 | None:intergenic | 25.0% |
| ! | AATGTTTAGACAAATTACCA+CGG | - | chr5_3:9947491-9947510 | None:intergenic | 25.0% |
| !! | AAGCTCTTTTGTAACAAATA+TGG | - | chr5_3:9947846-9947865 | None:intergenic | 25.0% |
| !! | AATCATAATTCAGGTTTACA+TGG | - | chr5_3:9947897-9947916 | None:intergenic | 25.0% |
| ! | ACCTGAATTATGATTATGAA+AGG | + | chr5_3:9947902-9947921 | Msa0797720:intron | 25.0% |
| ! | TCCTTTCATAATCATAATTC+AGG | - | chr5_3:9947906-9947925 | None:intergenic | 25.0% |
| ! | ATTAATTCACAAGACATGTT+TGG | + | chr5_3:9947932-9947951 | Msa0797720:intron | 25.0% |
| ! | TTAATTCACAAGACATGTTT+GGG | + | chr5_3:9947933-9947952 | Msa0797720:intron | 25.0% |
| ! | TGAAATATGTGCAGATTATA+TGG | + | chr5_3:9948193-9948212 | Msa0797720:intron | 25.0% |
| ! | CATATAATACTTAGAATTGC+GGG | - | chr5_3:9948531-9948550 | None:intergenic | 25.0% |
| ! | ACAACAGATTTACAATACAA+AGG | - | chr5_3:9948756-9948775 | None:intergenic | 25.0% |
| ! | AATTGGAGATTAAGTTGTTG+TGG | - | chr5_3:9943988-9944007 | None:intergenic | 30.0% |
| GTTAGTAACAGTAATGTTTC+TGG | + | chr5_3:9944540-9944559 | Msa0797720:intron | 30.0% | |
| AATGTTGTCAATTTGCACAT+GGG | - | chr5_3:9944624-9944643 | None:intergenic | 30.0% | |
| GACAACATTCTCAAAGATAA+AGG | + | chr5_3:9944635-9944654 | Msa0797720:CDS | 30.0% | |
| TCTCAAAGATAAAGGTTAGT+TGG | + | chr5_3:9944643-9944662 | Msa0797720:intron | 30.0% | |
| ! | CTCAAAGATAAAGGTTAGTT+GGG | + | chr5_3:9944644-9944663 | Msa0797720:intron | 30.0% |
| ! | ATAAAGGTTAGTTGGGTTAA+GGG | + | chr5_3:9944651-9944670 | Msa0797720:intron | 30.0% |
| !! | CAATTTTTGTTTCGAGACAA+TGG | + | chr5_3:9944755-9944774 | Msa0797720:intron | 30.0% |
| !! | CTTATTTTCATTAGCTCTTC+AGG | + | chr5_3:9944815-9944834 | Msa0797720:intron | 30.0% |
| TGCATCTAGTAACTTGAAAA+TGG | + | chr5_3:9944947-9944966 | Msa0797720:intron | 30.0% | |
| ACTTGAAAATGGCTTATAGT+TGG | + | chr5_3:9944958-9944977 | Msa0797720:intron | 30.0% | |
| CTTGAAAATGGCTTATAGTT+GGG | + | chr5_3:9944959-9944978 | Msa0797720:intron | 30.0% | |
| CAGTAACATGGTCAATTATA+AGG | - | chr5_3:9945179-9945198 | None:intergenic | 30.0% | |
| ATGTCTACGAATATTGCATA+TGG | - | chr5_3:9945331-9945350 | None:intergenic | 30.0% | |
| ATATGCAATATTCGTAGACA+TGG | + | chr5_3:9945330-9945349 | Msa0797720:CDS | 30.0% | |
| !!! | TTTTTTTTGACAGAGAAGAG+GGG | + | chr5_3:9945526-9945545 | Msa0797720:intron | 30.0% |
| !! | TGAGCATAACAATTTTAACG+GGG | + | chr5_3:9946175-9946194 | Msa0797720:CDS | 30.0% |
| AATATCAGACCAATAATAGG+TGG | + | chr5_3:9946498-9946517 | Msa0797720:intron | 30.0% | |
| ! | ATACCATCTTCCATTTTATC+AGG | + | chr5_3:9946668-9946687 | Msa0797720:intron | 30.0% |
| ! | TACCATCTTCCATTTTATCA+GGG | + | chr5_3:9946669-9946688 | Msa0797720:intron | 30.0% |
| TTGGAATTGTTTACAAGAGA+TGG | + | chr5_3:9946744-9946763 | Msa0797720:CDS | 30.0% | |
| TGGAATTGTTTACAAGAGAT+GGG | + | chr5_3:9946745-9946764 | Msa0797720:CDS | 30.0% | |
| !! | CTTGCAAGTTATTTTGTTCA+AGG | + | chr5_3:9946829-9946848 | Msa0797720:intron | 30.0% |
| AACTAATTGCCAAGAGAAAT+AGG | + | chr5_3:9946858-9946877 | Msa0797720:intron | 30.0% | |
| ! | TTTCAAACACCTATTTCTCT+TGG | - | chr5_3:9946870-9946889 | None:intergenic | 30.0% |
| TTTCTTGAAAGGGAAAACAT+GGG | - | chr5_3:9947052-9947071 | None:intergenic | 30.0% | |
| GTAACTAATGGTTTCTTGAA+AGG | - | chr5_3:9947063-9947082 | None:intergenic | 30.0% | |
| TGTGGGAAATAAAACATCAT+AGG | - | chr5_3:9947230-9947249 | None:intergenic | 30.0% | |
| ! | TCTATGTATTGGGATGTTTT+CGG | + | chr5_3:9947770-9947789 | Msa0797720:intron | 30.0% |
| ATCACTAGTACAACTATTCT+GGG | - | chr5_3:9947963-9947982 | None:intergenic | 30.0% | |
| TATCACTAGTACAACTATTC+TGG | - | chr5_3:9947964-9947983 | None:intergenic | 30.0% | |
| ! | AATGACATTGATTGTGGATA+AGG | - | chr5_3:9948316-9948335 | None:intergenic | 30.0% |
| ! | GTGAAAAATGACATTGATTG+TGG | - | chr5_3:9948322-9948341 | None:intergenic | 30.0% |
| ACAGTAATTCCACTCTTATT+TGG | - | chr5_3:9948566-9948585 | None:intergenic | 30.0% | |
| AATAAGAGTGGAATTACTGT+TGG | + | chr5_3:9948566-9948585 | Msa0797720:CDS | 30.0% | |
| ! | AGAACTATTTTCCAGTTACA+AGG | + | chr5_3:9948612-9948631 | Msa0797720:exon | 30.0% |
| ! | GAACTATTTTCCAGTTACAA+GGG | + | chr5_3:9948613-9948632 | Msa0797720:exon | 30.0% |
| ! | AACTATTTTCCAGTTACAAG+GGG | + | chr5_3:9948614-9948633 | Msa0797720:three_prime_UTR | 30.0% |
| ATGACTAAGGTTTGAATTGT+GGG | - | chr5_3:9948818-9948837 | None:intergenic | 30.0% | |
| !! | ATGAAGTGGTGAAGTTGATA+GGG | - | chr5_3:9943939-9943958 | None:intergenic | 35.0% |
| GGTGAAAAACGAGGAATTAA+AGG | - | chr5_3:9944022-9944041 | None:intergenic | 35.0% | |
| ! | CATTGTTTCGTGATTTTGAG+CGG | - | chr5_3:9944043-9944062 | None:intergenic | 35.0% |
| AGAAATGACGAGAACAAAAG+TGG | - | chr5_3:9944187-9944206 | None:intergenic | 35.0% | |
| !! | AATTGTTGATAGTCCTTCCT+TGG | + | chr5_3:9944212-9944231 | Msa0797720:CDS | 35.0% |
| !!! | TCTTTTTTGTTAGGAGCTTC+TGG | + | chr5_3:9944277-9944296 | Msa0797720:CDS | 35.0% |
| !! | AGAACTTTTGAGTCTAAACG+TGG | + | chr5_3:9944368-9944387 | Msa0797720:intron | 35.0% |
| ! | ATAGCTTTTCTTCATCACCT+TGG | + | chr5_3:9944572-9944591 | Msa0797720:CDS | 35.0% |
| ! | CAATAACAAAGTGGATTCCA+AGG | - | chr5_3:9944592-9944611 | None:intergenic | 35.0% |
| !! | ATCCACTTTGTTATTGTTCC+TGG | + | chr5_3:9944596-9944615 | Msa0797720:CDS | 35.0% |
| GAATGTTGTCAATTTGCACA+TGG | - | chr5_3:9944625-9944644 | None:intergenic | 35.0% | |
| ! | GATAAAGGTTAGTTGGGTTA+AGG | + | chr5_3:9944650-9944669 | Msa0797720:intron | 35.0% |
| ! | GCCTATGAAAACAAGCTTTT+TGG | + | chr5_3:9944841-9944860 | Msa0797720:intron | 35.0% |
| !! | GCCAAAAAGCTTGTTTTCAT+AGG | - | chr5_3:9944845-9944864 | None:intergenic | 35.0% |
| ATAGCAGCTAAACTTTCAGT+TGG | + | chr5_3:9945300-9945319 | Msa0797720:CDS | 35.0% | |
| CTACGAATATTGCATATGGA+AGG | - | chr5_3:9945327-9945346 | None:intergenic | 35.0% | |
| GAATTGATTATGGGTCAACT+GGG | + | chr5_3:9945558-9945577 | Msa0797720:CDS | 35.0% | |
| AATTGATTATGGGTCAACTG+GGG | + | chr5_3:9945559-9945578 | Msa0797720:CDS | 35.0% | |
| GGTCCAATACTTGATGAAAA+TGG | + | chr5_3:9946032-9946051 | Msa0797720:CDS | 35.0% | |
| ! | CGTCCATTTTCATCAAGTAT+TGG | - | chr5_3:9946038-9946057 | None:intergenic | 35.0% |
| ! | TCTGTAATGCGTTTTCCATT+AGG | - | chr5_3:9946215-9946234 | None:intergenic | 35.0% |
| ATGGAAAACGCATTACAGAA+TGG | + | chr5_3:9946216-9946235 | Msa0797720:CDS | 35.0% | |
| CATAATGCAACTTTCCACAA+TGG | + | chr5_3:9946239-9946258 | Msa0797720:CDS | 35.0% | |
| !!! | AATGGTGTTGGTTTTGAGAA+TGG | + | chr5_3:9946257-9946276 | Msa0797720:CDS | 35.0% |
| AACGTCTAAGTCGAATGAAT+GGG | + | chr5_3:9946327-9946346 | Msa0797720:CDS | 35.0% | |
| AAATATTGCCACTGTACTCT+GGG | + | chr5_3:9946587-9946606 | Msa0797720:intron | 35.0% | |
| ! | TCAGTTGATGCATGTTTCTT+TGG | + | chr5_3:9946632-9946651 | Msa0797720:intron | 35.0% |
| ! | ATCTTCCATTTTATCAGGGA+GGG | + | chr5_3:9946673-9946692 | Msa0797720:intron | 35.0% |
| ATTGTTTACAAGAGATGGGA+TGG | + | chr5_3:9946749-9946768 | Msa0797720:CDS | 35.0% | |
| TTGTTTACAAGAGATGGGAT+GGG | + | chr5_3:9946750-9946769 | Msa0797720:CDS | 35.0% | |
| !! | GCTTTTAAGAACAGTTCAGT+TGG | + | chr5_3:9946917-9946936 | Msa0797720:intron | 35.0% |
| AGAGTAAAATCACATGTACC+AGG | - | chr5_3:9946960-9946979 | None:intergenic | 35.0% | |
| TACATCCTTACAGATAACTC+TGG | - | chr5_3:9946991-9947010 | None:intergenic | 35.0% | |
| AAGGATGTAAATATGCGAGT+TGG | + | chr5_3:9947002-9947021 | Msa0797720:intron | 35.0% | |
| GTTTCTTGAAAGGGAAAACA+TGG | - | chr5_3:9947053-9947072 | None:intergenic | 35.0% | |
| TAGCATGCATGTACTCTATA+AGG | - | chr5_3:9947137-9947156 | None:intergenic | 35.0% | |
| TGTCTACATCAGATTGTTCA+TGG | + | chr5_3:9947273-9947292 | Msa0797720:intron | 35.0% | |
| ! | GCAGAGAAAGAAGATTTTTC+TGG | + | chr5_3:9947342-9947361 | Msa0797720:CDS | 35.0% |
| CAAACAACTTATTCAGCCTT+TGG | + | chr5_3:9947368-9947387 | Msa0797720:CDS | 35.0% | |
| TTTATAGCTGCTACAAACGT+TGG | + | chr5_3:9947533-9947552 | Msa0797720:intron | 35.0% | |
| GTTGGATAATTTCGTTGTTG+TGG | + | chr5_3:9947551-9947570 | Msa0797720:CDS | 35.0% | |
| GAAGGTCAAATAATTGCATG+TGG | + | chr5_3:9947579-9947598 | Msa0797720:CDS | 35.0% | |
| GAAGCTGATTAATATCGTTC+TGG | - | chr5_3:9947820-9947839 | None:intergenic | 35.0% | |
| !!! | TATTTTTCAGGCTTCAGCTT+TGG | + | chr5_3:9948083-9948102 | Msa0797720:intron | 35.0% |
| AAGCTTCTACCAAATAAGAG+TGG | + | chr5_3:9948554-9948573 | Msa0797720:CDS | 35.0% | |
| ! | ACTATTTTCCAGTTACAAGG+GGG | + | chr5_3:9948615-9948634 | Msa0797720:three_prime_UTR | 35.0% |
| CATGACTAAGGTTTGAATTG+TGG | - | chr5_3:9948819-9948838 | None:intergenic | 35.0% | |
| !! | GAAGTTGATAGGGTTTGGAA+GGG | - | chr5_3:9943929-9943948 | None:intergenic | 40.0% |
| !! | TGAAGTTGATAGGGTTTGGA+AGG | - | chr5_3:9943930-9943949 | None:intergenic | 40.0% |
| ! | GATGAAGTGGTGAAGTTGAT+AGG | - | chr5_3:9943940-9943959 | None:intergenic | 40.0% |
| ! | GTGGATTGAAGTGAGAGTAT+TGG | - | chr5_3:9943969-9943988 | None:intergenic | 40.0% |
| TAAAGGAGCGAGGTTTGAAT+TGG | - | chr5_3:9944005-9944024 | None:intergenic | 40.0% | |
| ! | ATTTTGAGCGGTGAAAAACG+AGG | - | chr5_3:9944031-9944050 | None:intergenic | 40.0% |
| TTGAACAACGAAGGAGTGAA+CGG | + | chr5_3:9944078-9944097 | Msa0797720:CDS | 40.0% | |
| CTACGATAAGCGAGAAGATA+AGG | - | chr5_3:9944162-9944181 | None:intergenic | 40.0% | |
| ! | TTTTTGTTAGGAGCTTCTGG+AGG | + | chr5_3:9944280-9944299 | Msa0797720:CDS | 40.0% |
| GAGGCGTAAAATTGATGTTC+TGG | + | chr5_3:9944299-9944318 | Msa0797720:intron | 40.0% | |
| TGCCAGGAACAATAACAAAG+TGG | - | chr5_3:9944601-9944620 | None:intergenic | 40.0% | |
| !!! | GTTGGGTTAAGGGTTTTGTT+TGG | + | chr5_3:9944661-9944680 | Msa0797720:intron | 40.0% |
| ! | GATGCATTTGTTGCTTCTTC+AGG | - | chr5_3:9944933-9944952 | None:intergenic | 40.0% |
| TCCACCTATGCTGAAAAATG+AGG | + | chr5_3:9945119-9945138 | Msa0797720:intron | 40.0% | |
| CCACCTATGCTGAAAAATGA+GGG | + | chr5_3:9945120-9945139 | Msa0797720:intron | 40.0% | |
| ACCATGTTACTGCGTTTACA+GGG | + | chr5_3:9945187-9945206 | Msa0797720:intron | 40.0% | |
| GTTAGTGTCAGTGTTACAAG+TGG | + | chr5_3:9945375-9945394 | Msa0797720:CDS | 40.0% | |
| TGGTCGGTGGAATTGATTAT+GGG | + | chr5_3:9945549-9945568 | Msa0797720:CDS | 40.0% | |
| GGAATTGATTATGGGTCAAC+TGG | + | chr5_3:9945557-9945576 | Msa0797720:CDS | 40.0% | |
| ATTCAATACTTCACCAGAGC+TGG | - | chr5_3:9945666-9945685 | None:intergenic | 40.0% | |
| AACATGTCTGCTTCTTCAAG+AGG | - | chr5_3:9946077-9946096 | None:intergenic | 40.0% | |
| CAGACATGTTAATTCGCAAG+CGG | + | chr5_3:9946087-9946106 | Msa0797720:CDS | 40.0% | |
| AGACATGTTAATTCGCAAGC+GGG | + | chr5_3:9946088-9946107 | Msa0797720:CDS | 40.0% | |
| !! | AGCTGCTATTTCACTTTGCT+CGG | - | chr5_3:9946114-9946133 | None:intergenic | 40.0% |
| AGCAGCTAACTATGTGAAAG+CGG | + | chr5_3:9946127-9946146 | Msa0797720:CDS | 40.0% | |
| TAACTATGTGAAAGCGGTTG+AGG | + | chr5_3:9946133-9946152 | Msa0797720:CDS | 40.0% | |
| ! | GTAATGCGTTTTCCATTAGG+TGG | - | chr5_3:9946212-9946231 | None:intergenic | 40.0% |
| TCTCAAAACCAACACCATTG+TGG | - | chr5_3:9946256-9946275 | None:intergenic | 40.0% | |
| !!! | GTTGGTTTTGAGAATGGAGA+TGG | + | chr5_3:9946263-9946282 | Msa0797720:CDS | 40.0% |
| TTTGAGAATGGAGATGGCTT+AGG | + | chr5_3:9946269-9946288 | Msa0797720:CDS | 40.0% | |
| TTGAGAATGGAGATGGCTTA+GGG | + | chr5_3:9946270-9946289 | Msa0797720:CDS | 40.0% | |
| GAACGTCTAAGTCGAATGAA+TGG | + | chr5_3:9946326-9946345 | Msa0797720:CDS | 40.0% | |
| ! | AATTTTCTTGTCAAGTGCCC+TGG | + | chr5_3:9946411-9946430 | Msa0797720:intron | 40.0% |
| GACTTAAATAAGCACAGCCA+GGG | - | chr5_3:9946431-9946450 | None:intergenic | 40.0% | |
| AGACTTAAATAAGCACAGCC+AGG | - | chr5_3:9946432-9946451 | None:intergenic | 40.0% | |
| CAGCAAACACCACCTATTAT+TGG | - | chr5_3:9946510-9946529 | None:intergenic | 40.0% | |
| CAAATATTGCCACTGTACTC+TGG | + | chr5_3:9946586-9946605 | Msa0797720:intron | 40.0% | |
| CTCCCTGATAAAATGGAAGA+TGG | - | chr5_3:9946674-9946693 | None:intergenic | 40.0% | |
| ! | CATCTTCCATTTTATCAGGG+AGG | + | chr5_3:9946672-9946691 | Msa0797720:intron | 40.0% |
| ! | TCTTCCATTTTATCAGGGAG+GGG | + | chr5_3:9946674-9946693 | Msa0797720:intron | 40.0% |
| GGTTCAAAGAGTTCACTTGT+TGG | + | chr5_3:9946695-9946714 | Msa0797720:CDS | 40.0% | |
| ! | CAAAGAGTTCACTTGTTGGA+TGG | + | chr5_3:9946699-9946718 | Msa0797720:CDS | 40.0% |
| TTGTTGGATGGCACTATTAG+TGG | + | chr5_3:9946711-9946730 | Msa0797720:CDS | 40.0% | |
| AGTTCAGTTGGCATTCTTGT+GGG | + | chr5_3:9946929-9946948 | Msa0797720:intron | 40.0% | |
| GAGATCCAGAGTTATCTGTA+AGG | + | chr5_3:9946983-9947002 | Msa0797720:intron | 40.0% | |
| AACATGGGAATGCTCACAAA+TGG | - | chr5_3:9947037-9947056 | None:intergenic | 40.0% | |
| ! | TTTTGCAGTGACCTTTACGA+AGG | + | chr5_3:9947309-9947328 | Msa0797720:intron | 40.0% |
| ACAACTTATTCAGCCTTTGG+AGG | + | chr5_3:9947371-9947390 | Msa0797720:CDS | 40.0% | |
| TTACATAGCTTACATAGCCG+TGG | + | chr5_3:9947471-9947490 | Msa0797720:intron | 40.0% | |
| TTCGTTGTTGTGGAAAGAGA+AGG | + | chr5_3:9947561-9947580 | Msa0797720:CDS | 40.0% | |
| GGTCAAATAATTGCATGTGG+TGG | + | chr5_3:9947582-9947601 | Msa0797720:CDS | 40.0% | |
| GCATGCATGATTACATGCAA+GGG | - | chr5_3:9948147-9948166 | None:intergenic | 40.0% | |
| TTACAACACGTACAGCAGAT+TGG | + | chr5_3:9948258-9948277 | Msa0797720:CDS | 40.0% | |
| ! | TCCCCTAATCCATGTCATTT+AGG | + | chr5_3:9948290-9948309 | Msa0797720:intron | 40.0% |
| !! | GCCTAAATGACATGGATTAG+GGG | - | chr5_3:9948294-9948313 | None:intergenic | 40.0% |
| ! | GGCCTAAATGACATGGATTA+GGG | - | chr5_3:9948295-9948314 | None:intergenic | 40.0% |
| AGGCCTAAATGACATGGATT+AGG | - | chr5_3:9948296-9948315 | None:intergenic | 40.0% | |
| TGGATAAGGCCTAAATGACA+TGG | - | chr5_3:9948302-9948321 | None:intergenic | 40.0% | |
| ATGATTCCCAACTTCTTGAC+AGG | + | chr5_3:9948432-9948451 | Msa0797720:intron | 40.0% | |
| CACAAACCTGTCAAGAAGTT+GGG | - | chr5_3:9948441-9948460 | None:intergenic | 40.0% | |
| TCACAAACCTGTCAAGAAGT+TGG | - | chr5_3:9948442-9948461 | None:intergenic | 40.0% | |
| AACTTCTTGACAGGTTTGTG+AGG | + | chr5_3:9948441-9948460 | Msa0797720:intron | 40.0% | |
| AAGAGTGGAATTACTGTTGG+TGG | + | chr5_3:9948569-9948588 | Msa0797720:CDS | 40.0% | |
| ! | GTAAGTGTGATTGGAAGCAT+GGG | + | chr5_3:9948637-9948656 | Msa0797720:three_prime_UTR | 40.0% |
| TTCGAGCTACAAGATTGTCA+CGG | - | chr5_3:9948695-9948714 | None:intergenic | 40.0% | |
| TTGTAGCTCGAATCTGTGTT+TGG | + | chr5_3:9948703-9948722 | Msa0797720:three_prime_UTR | 40.0% | |
| ! | GTATAGAGGCGCGATAAAGA+AGG | - | chr5_3:9943904-9943923 | None:intergenic | 45.0% |
| ! | GGTTTGGAAGGGAAGTATAG+AGG | - | chr5_3:9943918-9943937 | None:intergenic | 45.0% |
| !! | GTGGTGAAGTTGATAGGGTT+TGG | - | chr5_3:9943934-9943953 | None:intergenic | 45.0% |
| ! | GTATTGGCGAGAAGATGAAG+TGG | - | chr5_3:9943953-9943972 | None:intergenic | 45.0% |
| AACGAGGAATTAAAGGAGCG+AGG | - | chr5_3:9944015-9944034 | None:intergenic | 45.0% | |
| GTGAACGGAATCACTGAAGA+AGG | + | chr5_3:9944093-9944112 | Msa0797720:CDS | 45.0% | |
| ATAAGGCCAAGCTTCACGAA+GGG | - | chr5_3:9944145-9944164 | None:intergenic | 45.0% | |
| TTGAGAATGGGATCCAAGGA+AGG | - | chr5_3:9944228-9944247 | None:intergenic | 45.0% | |
| TTCCTTGGATCCCATTCTCA+AGG | + | chr5_3:9944227-9944246 | Msa0797720:CDS | 45.0% | |
| !! | ACAGTAATGTTTCTGGGTGC+AGG | + | chr5_3:9944547-9944566 | Msa0797720:intron | 45.0% |
| !! | CCCTCATTTTTCAGCATAGG+TGG | - | chr5_3:9945123-9945142 | None:intergenic | 45.0% |
| !! | GAGCCCTCATTTTTCAGCAT+AGG | - | chr5_3:9945126-9945145 | None:intergenic | 45.0% |
| AGGGCTCTTCAATCGTAACA+CGG | + | chr5_3:9945139-9945158 | Msa0797720:intron | 45.0% | |
| GACCATGTTACTGCGTTTAC+AGG | + | chr5_3:9945186-9945205 | Msa0797720:intron | 45.0% | |
| TCCCTGTAAACGCAGTAACA+TGG | - | chr5_3:9945191-9945210 | None:intergenic | 45.0% | |
| GGAGCAAGGCTAAGTATGTT+GGG | + | chr5_3:9945208-9945227 | Msa0797720:CDS | 45.0% | |
| TGGTAACTTTCTTGCAGCCA+AGG | + | chr5_3:9945395-9945414 | Msa0797720:CDS | 45.0% | |
| ! | TTTTTGACAGAGAAGAGGGG+TGG | + | chr5_3:9945529-9945548 | Msa0797720:intron | 45.0% |
| GTGGTCGGTGGAATTGATTA+TGG | + | chr5_3:9945548-9945567 | Msa0797720:CDS | 45.0% | |
| TTCTTTCTCCAGCACCTATG+AGG | + | chr5_3:9945953-9945972 | Msa0797720:intron | 45.0% | |
| ACAAGCTGTTGCAACCTCAT+AGG | - | chr5_3:9945970-9945989 | None:intergenic | 45.0% | |
| CAAGAGGCAAGAAACGAATC+AGG | - | chr5_3:9946061-9946080 | None:intergenic | 45.0% | |
| GCAGTCAAATCTCCACCTAA+TGG | + | chr5_3:9946197-9946216 | Msa0797720:CDS | 45.0% | |
| GCAACTTTCCACAATGGTGT+TGG | + | chr5_3:9946245-9946264 | Msa0797720:CDS | 45.0% | |
| GAATGGGTACCTGTCAGAAT+TGG | + | chr5_3:9946343-9946362 | Msa0797720:CDS | 45.0% | |
| !! | TGCTGCAGCTTTTGTTTGCA+GGG | + | chr5_3:9946367-9946386 | Msa0797720:CDS | 45.0% |
| TGAACCCCTCCCTGATAAAA+TGG | - | chr5_3:9946681-9946700 | None:intergenic | 45.0% | |
| AAGAGATGGGATGGGAACAA+TGG | + | chr5_3:9946758-9946777 | Msa0797720:CDS | 45.0% | |
| CAGTTCAGTTGGCATTCTTG+TGG | + | chr5_3:9946928-9946947 | Msa0797720:intron | 45.0% | |
| ! | GCATTCTTGTGGGTTTTTCC+TGG | + | chr5_3:9946939-9946958 | Msa0797720:intron | 45.0% |
| ! | CATGTGGCATACTGGTTAAG+CGG | + | chr5_3:9947394-9947413 | Msa0797720:CDS | 45.0% |
| TCTCCTCAGGGTAAGGAAAA+AGG | - | chr5_3:9947608-9947627 | None:intergenic | 45.0% | |
| GGCATGCATGATTACATGCA+AGG | - | chr5_3:9948148-9948167 | None:intergenic | 45.0% | |
| GAGAAGAAAGCAGCATCTCT+TGG | + | chr5_3:9948215-9948234 | Msa0797720:CDS | 45.0% | |
| CTGCTGTACGTGTTGTAAGT+AGG | - | chr5_3:9948256-9948275 | None:intergenic | 45.0% | |
| TACAAGGGGGTAAGTGTGAT+TGG | + | chr5_3:9948628-9948647 | Msa0797720:three_prime_UTR | 45.0% | |
| GGTAAGTGTGATTGGAAGCA+TGG | + | chr5_3:9948636-9948655 | Msa0797720:three_prime_UTR | 45.0% | |
| TCGAGCTACAAGATTGTCAC+GGG | - | chr5_3:9948694-9948713 | None:intergenic | 45.0% | |
| TCGAATCTGTGTTTGGTACC+AGG | + | chr5_3:9948710-9948729 | Msa0797720:three_prime_UTR | 45.0% | |
| AATGCTACATGTCGAAGACC+TGG | - | chr5_3:9948731-9948750 | None:intergenic | 45.0% | |
| TTGAATTGTGGGCAGGACAA+GGG | - | chr5_3:9948807-9948826 | None:intergenic | 45.0% | |
| TTTGAATTGTGGGCAGGACA+AGG | - | chr5_3:9948808-9948827 | None:intergenic | 45.0% | |
| CTAAGGTTTGAATTGTGGGC+AGG | - | chr5_3:9948814-9948833 | None:intergenic | 45.0% | |
| !! | AAATAATCATATTAATATTA+AGG | - | chr5_3:9945932-9945951 | None:intergenic | 5.0% |
| CGCAATGCGTTGAACAACGA+AGG | + | chr5_3:9944069-9944088 | Msa0797720:CDS | 50.0% | |
| TTCGTTCCCTTCGTGAAGCT+TGG | + | chr5_3:9944136-9944155 | Msa0797720:CDS | 50.0% | |
| GATAAGGCCAAGCTTCACGA+AGG | - | chr5_3:9944146-9944165 | None:intergenic | 50.0% | |
| TGCCTTGAGAATGGGATCCA+AGG | - | chr5_3:9944232-9944251 | None:intergenic | 50.0% | |
| TGGATCCCATTCTCAAGGCA+AGG | + | chr5_3:9944232-9944251 | Msa0797720:CDS | 50.0% | |
| GCATGCCTTGCCTTGAGAAT+GGG | - | chr5_3:9944240-9944259 | None:intergenic | 50.0% | |
| TGCATGCCTTGCCTTGAGAA+TGG | - | chr5_3:9944241-9944260 | None:intergenic | 50.0% | |
| TCAATTTGCACATGGGTGCC+AGG | - | chr5_3:9944617-9944636 | None:intergenic | 50.0% | |
| TACTGCGTTTACAGGGAGCA+AGG | + | chr5_3:9945194-9945213 | Msa0797720:intron | 50.0% | |
| GGGAGCAAGGCTAAGTATGT+TGG | + | chr5_3:9945207-9945226 | Msa0797720:intron | 50.0% | |
| ATGCGTGAGAGACTTGATGG+TGG | + | chr5_3:9945608-9945627 | Msa0797720:CDS | 50.0% | |
| TGTTGCAACCTCATAGGTGC+TGG | - | chr5_3:9945964-9945983 | None:intergenic | 50.0% | |
| ACAGCTTGTGCCTTGGCAAT+TGG | + | chr5_3:9945981-9946000 | Msa0797720:CDS | 50.0% | |
| CAGCTTGTGCCTTGGCAATT+GGG | + | chr5_3:9945982-9946001 | Msa0797720:CDS | 50.0% | |
| AGCTTGTGCCTTGGCAATTG+GGG | + | chr5_3:9945983-9946002 | Msa0797720:CDS | 50.0% | |
| GTGAAAGCGGTTGAGGAAGA+AGG | + | chr5_3:9946140-9946159 | Msa0797720:CDS | 50.0% | |
| ! | AGCGAGCAAGGCTTTGCTAT+TGG | + | chr5_3:9946296-9946315 | Msa0797720:CDS | 50.0% |
| !! | GAGCAAGGCTTTGCTATTGG+AGG | + | chr5_3:9946299-9946318 | Msa0797720:CDS | 50.0% |
| !! | CTGCTGCAGCTTTTGTTTGC+AGG | + | chr5_3:9946366-9946385 | Msa0797720:CDS | 50.0% |
| TATTGCCACTGTACTCTGGG+TGG | + | chr5_3:9946590-9946609 | Msa0797720:intron | 50.0% | |
| AGATGGGATGGGAACAATGG+TGG | + | chr5_3:9946761-9946780 | Msa0797720:CDS | 50.0% | |
| ! | CCTTTCGAGTGCCTTCGTAA+AGG | - | chr5_3:9947323-9947342 | None:intergenic | 50.0% |
| !! | CCTTTACGAAGGCACTCGAA+AGG | + | chr5_3:9947320-9947339 | Msa0797720:CDS | 50.0% |
| ! | ATTCAGCCTTTGGAGGCATG+TGG | + | chr5_3:9947378-9947397 | Msa0797720:CDS | 50.0% |
| AGTATGCCACATGCCTCCAA+AGG | - | chr5_3:9947387-9947406 | None:intergenic | 50.0% | |
| ! | TTTGGAGGCATGTGGCATAC+TGG | + | chr5_3:9947386-9947405 | Msa0797720:CDS | 50.0% |
| GGTTAAGCGGTCTGATGAAG+AGG | + | chr5_3:9947407-9947426 | Msa0797720:CDS | 50.0% | |
| ! | TGGCCTTTTTCCTTACCCTG+AGG | + | chr5_3:9947602-9947621 | Msa0797720:CDS | 50.0% |
| GCAATTTGTCTCCCTGTCCT+TGG | - | chr5_3:9947677-9947696 | None:intergenic | 50.0% | |
| GGACAGGGAGACAAATTGCT+TGG | + | chr5_3:9947678-9947697 | Msa0797720:CDS | 50.0% | |
| CACACTTACCCCCTTGTAAC+TGG | - | chr5_3:9948626-9948645 | None:intergenic | 50.0% | |
| AACGCTGCAATGTGTGCAGC+AGG | + | chr5_3:9945261-9945280 | Msa0797720:CDS | 55.0% | |
| TGACAGAGAAGAGGGGTGGT+CGG | + | chr5_3:9945533-9945552 | Msa0797720:intron | 55.0% | |
| CGCATGCGTGAGAGACTTGA+TGG | + | chr5_3:9945605-9945624 | Msa0797720:CDS | 55.0% | |
| AGAGCTGGAGTAGCCCAAGT+TGG | - | chr5_3:9945651-9945670 | None:intergenic | 55.0% | |
| AACTTGGGCTACTCCAGCTC+TGG | + | chr5_3:9945650-9945669 | Msa0797720:CDS | 55.0% | |
| GGTTGCAACAGCTTGTGCCT+TGG | + | chr5_3:9945974-9945993 | Msa0797720:CDS | 55.0% | |
| TTGTGCCTTGGCAATTGGGG+CGG | + | chr5_3:9945986-9946005 | Msa0797720:CDS | 55.0% | |
| CTGCAGCAGCCAATTCTGAC+AGG | - | chr5_3:9946355-9946374 | None:intergenic | 55.0% | |
| CCAAACCACCCAGAGTACAG+TGG | - | chr5_3:9946598-9946617 | None:intergenic | 55.0% | |
| CCACTGTACTCTGGGTGGTT+TGG | + | chr5_3:9946595-9946614 | Msa0797720:intron | 55.0% | |
| GGATGGGAACAATGGTGGCT+AGG | + | chr5_3:9946766-9946785 | Msa0797720:CDS | 55.0% | |
| GCACACTTCTCCTCAGGGTA+AGG | - | chr5_3:9947615-9947634 | None:intergenic | 55.0% | |
| CCTCTGCACACTTCTCCTCA+GGG | - | chr5_3:9947620-9947639 | None:intergenic | 55.0% | |
| ACCTCTGCACACTTCTCCTC+AGG | - | chr5_3:9947621-9947640 | None:intergenic | 55.0% | |
| GCAGTATCTCCTGATTGCCG+TGG | + | chr5_3:9947651-9947670 | Msa0797720:CDS | 55.0% | |
| CTTGACAGGTTTGTGAGGCG+TGG | + | chr5_3:9948446-9948465 | Msa0797720:intron | 55.0% | |
| GCTGCAATGTGTGCAGCAGG+AGG | + | chr5_3:9945264-9945283 | Msa0797720:CDS | 60.0% | |
| CTTGTCCGCCCCAATTGCCA+AGG | - | chr5_3:9945994-9946013 | None:intergenic | 60.0% | |
| ! | GGCTTAGGGACTAGCGAGCA+AGG | + | chr5_3:9946284-9946303 | Msa0797720:CDS | 60.0% |
| ! | CCCTGAGGAGAAGTGTGCAG+AGG | + | chr5_3:9947617-9947636 | Msa0797720:CDS | 60.0% |
| TCTCCTGATTGCCGTGGCCA+AGG | + | chr5_3:9947657-9947676 | Msa0797720:CDS | 60.0% | |
| TGTCCTTGGCCACGGCAATC+AGG | - | chr5_3:9947663-9947682 | None:intergenic | 60.0% | |
| TGATTGCCGTGGCCAAGGAC+AGG | + | chr5_3:9947662-9947681 | Msa0797720:CDS | 60.0% | |
| GATTGCCGTGGCCAAGGACA+GGG | + | chr5_3:9947663-9947682 | Msa0797720:CDS | 60.0% | |
| TGTCTCCCTGTCCTTGGCCA+CGG | - | chr5_3:9947671-9947690 | None:intergenic | 60.0% | |
| CAGAGAAGAGGGGTGGTCGG+TGG | + | chr5_3:9945536-9945555 | Msa0797720:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 9943895 | 9948838 | 9943895 | ID=Msa0797720;Name=Msa0797720 |
| chr5_3 | mRNA | 9943895 | 9948838 | 9943895 | ID=Msa0797720-mRNA-1;Parent=Msa0797720;Name=Msa0797720-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0.88|0.9|1|1|1|10|225|631 |
| chr5_3 | exon | 9943895 | 9944314 | 9943895 | ID=Msa0797720-mRNA-1:exon:4239;Parent=Msa0797720-mRNA-1 |
| chr5_3 | exon | 9944569 | 9944656 | 9944569 | ID=Msa0797720-mRNA-1:exon:4240;Parent=Msa0797720-mRNA-1 |
| chr5_3 | exon | 9945208 | 9945416 | 9945208 | ID=Msa0797720-mRNA-1:exon:4241;Parent=Msa0797720-mRNA-1 |
| chr5_3 | exon | 9945539 | 9945690 | 9945539 | ID=Msa0797720-mRNA-1:exon:4242;Parent=Msa0797720-mRNA-1 |
| chr5_3 | exon | 9945965 | 9946388 | 9945965 | ID=Msa0797720-mRNA-1:exon:4243;Parent=Msa0797720-mRNA-1 |
| chr5_3 | exon | 9946690 | 9946787 | 9946690 | ID=Msa0797720-mRNA-1:exon:4244;Parent=Msa0797720-mRNA-1 |
| chr5_3 | exon | 9947317 | 9947428 | 9947317 | ID=Msa0797720-mRNA-1:exon:4245;Parent=Msa0797720-mRNA-1 |
| chr5_3 | exon | 9947540 | 9947699 | 9947540 | ID=Msa0797720-mRNA-1:exon:4246;Parent=Msa0797720-mRNA-1 |
| chr5_3 | exon | 9948207 | 9948279 | 9948207 | ID=Msa0797720-mRNA-1:exon:4247;Parent=Msa0797720-mRNA-1 |
| chr5_3 | exon | 9948454 | 9948838 | 9948454 | ID=Msa0797720-mRNA-1:exon:4248;Parent=Msa0797720-mRNA-1 |
| chr5_3 | CDS | 9943895 | 9944314 | 9943895 | ID=Msa0797720-mRNA-1:cds;Parent=Msa0797720-mRNA-1 |
| chr5_3 | CDS | 9944569 | 9944656 | 9944569 | ID=Msa0797720-mRNA-1:cds;Parent=Msa0797720-mRNA-1 |
| chr5_3 | CDS | 9945208 | 9945416 | 9945208 | ID=Msa0797720-mRNA-1:cds;Parent=Msa0797720-mRNA-1 |
| chr5_3 | CDS | 9945539 | 9945690 | 9945539 | ID=Msa0797720-mRNA-1:cds;Parent=Msa0797720-mRNA-1 |
| chr5_3 | CDS | 9945965 | 9946388 | 9945965 | ID=Msa0797720-mRNA-1:cds;Parent=Msa0797720-mRNA-1 |
| chr5_3 | CDS | 9946690 | 9946787 | 9946690 | ID=Msa0797720-mRNA-1:cds;Parent=Msa0797720-mRNA-1 |
| chr5_3 | CDS | 9947317 | 9947428 | 9947317 | ID=Msa0797720-mRNA-1:cds;Parent=Msa0797720-mRNA-1 |
| chr5_3 | CDS | 9947540 | 9947699 | 9947540 | ID=Msa0797720-mRNA-1:cds;Parent=Msa0797720-mRNA-1 |
| chr5_3 | CDS | 9948207 | 9948279 | 9948207 | ID=Msa0797720-mRNA-1:cds;Parent=Msa0797720-mRNA-1 |
| chr5_3 | CDS | 9948454 | 9948613 | 9948454 | ID=Msa0797720-mRNA-1:cds;Parent=Msa0797720-mRNA-1 |
| chr5_3 | three_prime_UTR | 9948614 | 9948838 | 9948614 | ID=Msa0797720-mRNA-1:three_prime_utr;Parent=Msa0797720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
