AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0787750


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0787750 MtrunA17_Chr5g0445771 80.252 476 52 6 1 438 1 472 0.0 721
Msa0787750 MtrunA17_Chr5g0446181 56.291 453 94 14 1 447 3 357 2.65e-127 373
Msa0787750 MtrunA17_Chr5g0445881 50.307 489 136 11 1 440 3 433 2.30e-110 333
Msa0787750 MtrunA17_Chr5g0445861 38.964 444 149 9 1 344 3 424 7.09e-66 217
Msa0787750 MtrunA17_Chr5g0445831 56.780 236 61 7 1 223 3 210 2.62e-65 216
Msa0787750 MtrunA17_Chr5g0445831 37.618 319 129 9 61 352 141 416 2.26e-29 119
Msa0787750 MtrunA17_Chr5g0445811 37.598 383 89 12 1 343 3 275 2.91e-46 161
Msa0787750 MtrunA17_Chr5g0445871 49.029 206 69 4 235 440 1 170 1.69e-45 157
Msa0787750 MtrunA17_Chr5g0445961 36.070 402 124 10 2 274 4 401 4.87e-44 162
Msa0787750 MtrunA17_Chr5g0446171 37.156 218 91 7 2 214 4 180 1.87e-22 95.9
Msa0787750 MtrunA17_Chr1g0185261 37.209 215 77 5 66 262 1 175 3.04e-20 89.0
Msa0787750 MtrunA17_Chr5g0445801 55.556 72 32 0 369 440 5 76 3.19e-19 82.8
Msa0787750 MtrunA17_Chr5g0445821 54.167 72 29 1 369 440 5 72 3.17e-18 80.1
Msa0787750 MtrunA17_Chr5g0413371 41.096 146 62 3 21 161 3 129 1.49e-17 85.1
Msa0787750 MtrunA17_Chr5g0446191 44.681 141 58 5 28 159 20 149 1.96e-16 81.6
Msa0787750 MtrunA17_Chr5g0446231 42.361 144 63 5 25 159 2 134 2.17e-15 78.2
Msa0787750 MtrunA17_Chr5g0434151 48.438 64 28 1 361 424 18 76 3.68e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 90 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATGATCATCTTGATTTAT+TGG 0.203669 5_2:-73776816 None:intergenic
AACAGAGATTGTTGAATTAG+AGG 0.253180 5_2:+73776257 Msa0787750:CDS
CTTGTTAGGCTTTGTGGAAT+TGG 0.253558 5_2:-73775818 None:intergenic
TAAGGTTAAAATTGAAGAAT+TGG 0.289099 5_2:+73776440 Msa0787750:intron
TTCAAGCTTGTTAGGCTTTG+TGG 0.304052 5_2:-73775824 None:intergenic
TGGTGACCCAGGTTCAGTTT+TGG 0.318302 5_2:-73775788 None:intergenic
TCGGGCTTAGATGCCTCTAT+TGG 0.322418 5_2:+73776630 Msa0787750:CDS
TGATAGTGTTGAAGCTGTTT+TGG 0.323247 5_2:+73775906 Msa0787750:intron
CATTTAAAGAAAGCTAGTTT+TGG 0.330754 5_2:+73778398 Msa0787750:CDS
GGAGACAGTAAAGAAGAATT+TGG 0.339017 5_2:+73776464 Msa0787750:CDS
AGGAAAACGGTTGAGATTAC+AGG 0.365163 5_2:+73777718 Msa0787750:CDS
GTCTATTCATGATCTTGTTA+TGG 0.368869 5_2:+73775852 Msa0787750:CDS
AGAAAAGAAGAACAATGAAT+TGG 0.369477 5_2:+73776170 Msa0787750:CDS
GTTGCAACAAAGCTTTGAAA+TGG 0.369757 5_2:+73775966 Msa0787750:CDS
GAGAGGAAATTTGTGAGAAA+GGG 0.390161 5_2:+73776064 Msa0787750:CDS
GAGGAATGAAAGCAGCAAAT+TGG 0.390389 5_2:+73776503 Msa0787750:CDS
CAAGATGATCATTACACTCT+TGG 0.393009 5_2:+73776825 Msa0787750:CDS
CTCATTGTTGCCACCAATAG+AGG 0.396366 5_2:-73776643 None:intergenic
GGAGGAAGATGACATTGAAT+TGG 0.407668 5_2:+73776317 Msa0787750:CDS
AGAGAGGAAATTTGTGAGAA+AGG 0.411748 5_2:+73776063 Msa0787750:CDS
GACTGGTGAATTAGAGAGTA+AGG 0.418061 5_2:+73776356 Msa0787750:CDS
TGGGTTGCATGTTAATGATT+GGG 0.426382 5_2:-73775768 None:intergenic
TTGGGTTGCATGTTAATGAT+TGG 0.429500 5_2:-73775769 None:intergenic
AGCCGGTGGAAGAGTGAAAC+TGG 0.434903 5_2:+73778304 Msa0787750:intron
GACTTGTCTTCAAGCTTGTT+AGG 0.440389 5_2:-73775832 None:intergenic
TCGTCCTCGTTATCTTCAAA+AGG 0.448253 5_2:-73776738 None:intergenic
CGCTAGAAAGCCCAGGAAAA+CGG 0.451250 5_2:+73777705 Msa0787750:CDS
TCATCTTGATTTATTGGTAA+AGG 0.453360 5_2:-73776810 None:intergenic
GCCAAGTTCATCAGCGGCAC+TGG 0.467989 5_2:+73778442 Msa0787750:CDS
GAGATTGTTGAATTAGAGGA+TGG 0.473469 5_2:+73776261 Msa0787750:CDS
TTCCAGTTTCACTCTTCCAC+CGG 0.474751 5_2:-73778306 None:intergenic
GGTTGAAATTAAGAATTTGA+AGG 0.477261 5_2:+73776194 Msa0787750:CDS
GGCTTTGTGGAATTGGAACC+TGG 0.477680 5_2:-73775811 None:intergenic
GATGCTCAAGGTTCATCATC+AGG 0.480745 5_2:+73776888 Msa0787750:CDS
ATGCAACCCAAAACTGAACC+TGG 0.480822 5_2:+73775781 Msa0787750:CDS
GGTTAAAATTGAAGAATTGG+AGG 0.482777 5_2:+73776443 Msa0787750:intron
GCCAGTGCCGCTGATGAACT+TGG 0.489599 5_2:-73778443 None:intergenic
TTTGACCGTGTCAACTGCAT+TGG 0.491729 5_2:-73778489 None:intergenic
CATCGTCGTCGTCGTCATCA+AGG 0.492320 5_2:-73778349 None:intergenic
GGCTTAGATGCCTCTATTGG+TGG 0.497178 5_2:+73776633 Msa0787750:CDS
AAAGAAGAACAATGAATTGG+AGG 0.497575 5_2:+73776173 Msa0787750:CDS
GCTTAGAGAGGAGTTTCACT+TGG 0.499506 5_2:+73775999 Msa0787750:CDS
TTCACTTGGAGAGACTTTCA+AGG 0.504313 5_2:+73776013 Msa0787750:CDS
ACTACGTGGAACTTGTCAAT+GGG 0.522509 5_2:+73775876 Msa0787750:CDS
TACTACGTGGAACTTGTCAA+TGG 0.523079 5_2:+73775875 Msa0787750:CDS
GTCACCGAGCAAAGGGATCA+AGG 0.524366 5_2:+73776866 Msa0787750:CDS
TTTCTGCAGGTGAAGAGTGT+TGG 0.526548 5_2:+73777674 Msa0787750:intron
GAGGAAGATGACATTGAATT+GGG 0.529053 5_2:+73776318 Msa0787750:CDS
GCATCCTTGATCCCTTTGCT+CGG 0.529843 5_2:-73776870 None:intergenic
GTACTCAGTCACCGAGCAAA+GGG 0.531835 5_2:+73776859 Msa0787750:CDS
TCTATTGGTGGCAACAATGA+GGG 0.540187 5_2:+73776645 Msa0787750:CDS
CTCTATTGGTGGCAACAATG+AGG 0.543509 5_2:+73776644 Msa0787750:CDS
TTGGAACCTGGTGGTGACCC+AGG 0.547983 5_2:-73775799 None:intergenic
GGAGAGATTAAAGCTTAGAG+AGG 0.551503 5_2:+73775987 Msa0787750:CDS
TCACTTGGAGAGACTTTCAA+GGG 0.554056 5_2:+73776014 Msa0787750:CDS
GATAACGAGGACGAGAATGC+TGG 0.561580 5_2:+73776747 Msa0787750:CDS
GGAGCCTTCTGCTGATCCAG+TGG 0.561757 5_2:+73776668 Msa0787750:CDS
CAAAGCCTCAAGTAATGTCT+CGG 0.571102 5_2:-73776544 None:intergenic
GTTGAGATTACAGGGTCTTG+TGG 0.573376 5_2:+73777727 Msa0787750:CDS
GATGATCAATCTATGTCTCA+AGG 0.574541 5_2:+73778371 Msa0787750:CDS
TTAATGATTGGGTGGAAAGG+TGG 0.582481 5_2:-73775757 None:intergenic
ACTGAACCTGGGTCACCACC+AGG 0.584855 5_2:+73775793 Msa0787750:CDS
AGTACTCAGTCACCGAGCAA+AGG 0.588934 5_2:+73776858 Msa0787750:CDS
GAGATTACAGGGTCTTGTGG+AGG 0.601325 5_2:+73777730 Msa0787750:CDS
TGGCAACGATGAGTGAGTTG+AGG 0.602280 5_2:+73776484 Msa0787750:CDS
CGAGGAAGAGCGTGTTCCTG+TGG 0.602659 5_2:+73776710 Msa0787750:CDS
GGAACCACTGGATCAGCAGA+AGG 0.603309 5_2:-73776672 None:intergenic
CTATTGGTGGCAACAATGAG+GGG 0.607900 5_2:+73776646 Msa0787750:CDS
CATTACTTGAGGCTTTGAAG+AGG 0.609257 5_2:+73776550 Msa0787750:CDS
TGGTATACGCTAGAAAGCCC+AGG 0.612521 5_2:+73777698 Msa0787750:CDS
TGAAAGAGTAACAACGTTGG+AGG 0.614401 5_2:+73776590 Msa0787750:CDS
ATTTGCCAATGCAGTTGACA+CGG 0.617434 5_2:+73778484 Msa0787750:CDS
TGAAAGCAGCAAATTGGCAG+AGG 0.619230 5_2:+73776509 Msa0787750:CDS
TGCAACCCAAAACTGAACCT+GGG 0.623349 5_2:+73775782 Msa0787750:CDS
GGAAAACGGTTGAGATTACA+GGG 0.627772 5_2:+73777719 Msa0787750:CDS
AAAGGGATCAAGGATGCTCA+AGG 0.628139 5_2:+73776876 Msa0787750:CDS
CATAAATGACATTGTTGACG+AGG 0.630628 5_2:+73776782 Msa0787750:CDS
CGAAGCCGAGACATTACTTG+AGG 0.631250 5_2:+73776539 Msa0787750:CDS
TCTTCAAAAGGATCAACCAC+AGG 0.631390 5_2:-73776726 None:intergenic
TGCAGGTGAAGAGTGTTGGA+TGG 0.633165 5_2:+73777678 Msa0787750:intron
GTTGCATGTTAATGATTGGG+TGG 0.633336 5_2:-73775765 None:intergenic
ATGTTAATGATTGGGTGGAA+AGG 0.635782 5_2:-73775760 None:intergenic
GTCTGAATTTAAGAAAAGAG+AGG 0.635967 5_2:+73776047 Msa0787750:CDS
TTGATTTATTGGTAAAGGAG+CGG 0.636520 5_2:-73776805 None:intergenic
TGAAGAGCCAAGTTCATCAG+CGG 0.677802 5_2:+73778436 Msa0787750:CDS
GAGGGATATGAGACTCAGAG+AGG 0.679885 5_2:+73775933 Msa0787750:CDS
TATTGGTGGCAACAATGAGG+GGG 0.686512 5_2:+73776647 Msa0787750:CDS
GCGTGAAAGAGTAACAACGT+TGG 0.738449 5_2:+73776587 Msa0787750:CDS
GATCTTGTTATGGTACTACG+TGG 0.742209 5_2:+73775862 Msa0787750:CDS
TTTGTGGAATTGGAACCTGG+TGG 0.802029 5_2:-73775808 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAGAAGATTAAGAAAAAA+TGG + chr5_2:73776295-73776314 Msa0787750:CDS 15.0%
!! AAAGAAGATTAAGAAAAAAT+GGG + chr5_2:73776296-73776315 Msa0787750:CDS 15.0%
!! GAATAATTCATAGTTATTAA+GGG + chr5_2:73777786-73777805 Msa0787750:intron 15.0%
!! AATAATTCATAGTTATTAAG+GGG + chr5_2:73777787-73777806 Msa0787750:intron 15.0%
!! AAACAAAAACTTGAAAAATA+AGG - chr5_2:73778223-73778242 None:intergenic 15.0%
!!! GAAACTTTAGAAGAAAAAAT+GGG - chr5_2:73775738-73775757 None:intergenic 20.0%
!! TAAGGTTAAAATTGAAGAAT+TGG + chr5_2:73776440-73776459 Msa0787750:intron 20.0%
!! TAATGATCATCTTGATTTAT+TGG - chr5_2:73776819-73776838 None:intergenic 20.0%
!! ACCAGGATATTATATTATTA+TGG + chr5_2:73777153-73777172 Msa0787750:intron 20.0%
!! CCAGGATATTATATTATTAT+GGG + chr5_2:73777154-73777173 Msa0787750:intron 20.0%
!! AATTAAACTTCTATCAAAAG+AGG - chr5_2:73777252-73777271 None:intergenic 20.0%
!! TTCAAAGTACAAACAATAAA+TGG - chr5_2:73777505-73777524 None:intergenic 20.0%
!! GGAATAATTCATAGTTATTA+AGG + chr5_2:73777785-73777804 Msa0787750:intron 20.0%
!! AAATATAGTGAAAATGTGTT+TGG + chr5_2:73777864-73777883 Msa0787750:intron 20.0%
!! AATGAAAAACAAACAAAATC+AGG + chr5_2:73778058-73778077 Msa0787750:intron 20.0%
!!! AAACACATTTTGTTTTTCTT+AGG + chr5_2:73778082-73778101 Msa0787750:intron 20.0%
!! AAAACTTGAAAAATAAGGTA+CGG - chr5_2:73778218-73778237 None:intergenic 20.0%
!! GGAAACTTTAGAAGAAAAAA+TGG - chr5_2:73775739-73775758 None:intergenic 25.0%
! AGAAAAGAAGAACAATGAAT+TGG + chr5_2:73776170-73776189 Msa0787750:CDS 25.0%
! GGTTGAAATTAAGAATTTGA+AGG + chr5_2:73776194-73776213 Msa0787750:CDS 25.0%
! TCATCTTGATTTATTGGTAA+AGG - chr5_2:73776813-73776832 None:intergenic 25.0%
! TCAGAAATGCATATCTATAT+AGG - chr5_2:73776944-73776963 None:intergenic 25.0%
! TTGAATTCAATATGTGTGAT+TGG + chr5_2:73776981-73777000 Msa0787750:intron 25.0%
!! AAATTATGATGACTAGCTAA+TGG - chr5_2:73777093-73777112 None:intergenic 25.0%
! CCCATAATAATATAATATCC+TGG - chr5_2:73777157-73777176 None:intergenic 25.0%
!!! TTTTTTAGAACATTTTCTGC+AGG + chr5_2:73777661-73777680 Msa0787750:intron 25.0%
! AATGATTATTCACTTGTTCA+TGG + chr5_2:73777836-73777855 Msa0787750:intron 25.0%
!! TGCTTAAACATATCTCTTTT+TGG + chr5_2:73778278-73778297 Msa0787750:intron 25.0%
!!! CATTTAAAGAAAGCTAGTTT+TGG + chr5_2:73778398-73778417 Msa0787750:CDS 25.0%
GTCTATTCATGATCTTGTTA+TGG + chr5_2:73775852-73775871 Msa0787750:CDS 30.0%
GTCTGAATTTAAGAAAAGAG+AGG + chr5_2:73776047-73776066 Msa0787750:CDS 30.0%
!! AGCTCTTTTGAAAGAAGTTA+AGG + chr5_2:73776110-73776129 Msa0787750:intron 30.0%
AAAGAAGAACAATGAATTGG+AGG + chr5_2:73776173-73776192 Msa0787750:CDS 30.0%
AACAGAGATTGTTGAATTAG+AGG + chr5_2:73776257-73776276 Msa0787750:CDS 30.0%
GAAGATTAAGAAAAAATGGG+AGG + chr5_2:73776299-73776318 Msa0787750:CDS 30.0%
GGTGAATTAAGAAAAATGAC+TGG + chr5_2:73776339-73776358 Msa0787750:CDS 30.0%
! TGAATTAGAGAGTAAGGTTT+TGG + chr5_2:73776362-73776381 Msa0787750:intron 30.0%
GCTAGATGATAAAAATGCTT+TGG + chr5_2:73776410-73776429 Msa0787750:intron 30.0%
! GATGATAAAAATGCTTTGGA+TGG + chr5_2:73776414-73776433 Msa0787750:intron 30.0%
GGTTAAAATTGAAGAATTGG+AGG + chr5_2:73776443-73776462 Msa0787750:intron 30.0%
TTGATTTATTGGTAAAGGAG+CGG - chr5_2:73776808-73776827 None:intergenic 30.0%
TGTGTGATTGGATAAATGTT+TGG + chr5_2:73776993-73777012 Msa0787750:intron 30.0%
TTATATTATTATGGGCTCTC+TGG + chr5_2:73777162-73777181 Msa0787750:intron 30.0%
TAGATAAACTCAATTAGCAC+CGG + chr5_2:73777207-73777226 Msa0787750:intron 30.0%
ACCAAATTAACCTAATATCC+CGG - chr5_2:73777229-73777248 None:intergenic 30.0%
AATAAAGATGAACCTTAGAG+AGG - chr5_2:73777298-73777317 None:intergenic 30.0%
! AATGCTACTTACATTTCCTT+AGG - chr5_2:73777376-73777395 None:intergenic 30.0%
ATATACTCCAACACTTGATA+TGG + chr5_2:73777579-73777598 Msa0787750:intron 30.0%
TATACTCCAACACTTGATAT+GGG + chr5_2:73777580-73777599 Msa0787750:intron 30.0%
AATTATCCCATATCAAGTGT+TGG - chr5_2:73777589-73777608 None:intergenic 30.0%
!! TGTTCTAAAAAACTGTCTGA+AGG - chr5_2:73777653-73777672 None:intergenic 30.0%
AATTCATAGTTATTAAGGGG+AGG + chr5_2:73777790-73777809 Msa0787750:intron 30.0%
!!! CAAGTGGATAAACTGTTTTT+TGG + chr5_2:73777909-73777928 Msa0787750:intron 30.0%
ATGTTAATGATTGGGTGGAA+AGG - chr5_2:73775763-73775782 None:intergenic 35.0%
TGGGTTGCATGTTAATGATT+GGG - chr5_2:73775771-73775790 None:intergenic 35.0%
! TTGGGTTGCATGTTAATGAT+TGG - chr5_2:73775772-73775791 None:intergenic 35.0%
!! TGATAGTGTTGAAGCTGTTT+TGG + chr5_2:73775906-73775925 Msa0787750:intron 35.0%
!! GTTGCAACAAAGCTTTGAAA+TGG + chr5_2:73775966-73775985 Msa0787750:CDS 35.0%
AGAGAGGAAATTTGTGAGAA+AGG + chr5_2:73776063-73776082 Msa0787750:CDS 35.0%
GAGAGGAAATTTGTGAGAAA+GGG + chr5_2:73776064-73776083 Msa0787750:CDS 35.0%
GAGATTGTTGAATTAGAGGA+TGG + chr5_2:73776261-73776280 Msa0787750:CDS 35.0%
GAGGAAGATGACATTGAATT+GGG + chr5_2:73776318-73776337 Msa0787750:CDS 35.0%
! AAATGCTTTGGATGGACTTA+AGG + chr5_2:73776422-73776441 Msa0787750:intron 35.0%
GGAGACAGTAAAGAAGAATT+TGG + chr5_2:73776464-73776483 Msa0787750:CDS 35.0%
! GGAAGATCTCATTCTTTTGT+CGG + chr5_2:73776611-73776630 Msa0787750:CDS 35.0%
! GAAGATCTCATTCTTTTGTC+GGG + chr5_2:73776612-73776631 Msa0787750:CDS 35.0%
!! TGATCCTTTTGAAGATAACG+AGG + chr5_2:73776734-73776753 Msa0787750:CDS 35.0%
CATAAATGACATTGTTGACG+AGG + chr5_2:73776782-73776801 Msa0787750:CDS 35.0%
CAAGATGATCATTACACTCT+TGG + chr5_2:73776825-73776844 Msa0787750:CDS 35.0%
AAGGTTCATCATCAGGTATA+TGG + chr5_2:73776895-73776914 Msa0787750:intron 35.0%
AGATAAACTCAATTAGCACC+GGG + chr5_2:73777208-73777227 Msa0787750:intron 35.0%
ACCGGGATATTAGGTTAATT+TGG + chr5_2:73777225-73777244 Msa0787750:intron 35.0%
!! GAAATGTAAGTAGCATTGAC+AGG + chr5_2:73777379-73777398 Msa0787750:intron 35.0%
GGAGGTTTATTAGAGAATAG+AGG + chr5_2:73777808-73777827 Msa0787750:intron 35.0%
TGTGTTTGGATTATCTGTTG+AGG + chr5_2:73777878-73777897 Msa0787750:intron 35.0%
TTGGATTATCTGTTGAGGTT+TGG + chr5_2:73777883-73777902 Msa0787750:intron 35.0%
TCAATTACTTGAAGATCCAG+TGG + chr5_2:73778132-73778151 Msa0787750:intron 35.0%
GATGATCAATCTATGTCTCA+AGG + chr5_2:73778371-73778390 Msa0787750:CDS 35.0%
TTAATGATTGGGTGGAAAGG+TGG - chr5_2:73775760-73775779 None:intergenic 40.0%
GTTGCATGTTAATGATTGGG+TGG - chr5_2:73775768-73775787 None:intergenic 40.0%
! CTTGTTAGGCTTTGTGGAAT+TGG - chr5_2:73775821-73775840 None:intergenic 40.0%
!! TTCAAGCTTGTTAGGCTTTG+TGG - chr5_2:73775827-73775846 None:intergenic 40.0%
! GACTTGTCTTCAAGCTTGTT+AGG - chr5_2:73775835-73775854 None:intergenic 40.0%
! GATCTTGTTATGGTACTACG+TGG + chr5_2:73775862-73775881 Msa0787750:CDS 40.0%
TACTACGTGGAACTTGTCAA+TGG + chr5_2:73775875-73775894 Msa0787750:CDS 40.0%
ACTACGTGGAACTTGTCAAT+GGG + chr5_2:73775876-73775895 Msa0787750:CDS 40.0%
!!! TTGAAGCTGTTTTGGAGAAG+AGG + chr5_2:73775914-73775933 Msa0787750:intron 40.0%
!!! TGAAGCTGTTTTGGAGAAGA+GGG + chr5_2:73775915-73775934 Msa0787750:intron 40.0%
GGAGAGATTAAAGCTTAGAG+AGG + chr5_2:73775987-73776006 Msa0787750:CDS 40.0%
TTCACTTGGAGAGACTTTCA+AGG + chr5_2:73776013-73776032 Msa0787750:CDS 40.0%
TCACTTGGAGAGACTTTCAA+GGG + chr5_2:73776014-73776033 Msa0787750:CDS 40.0%
GGAGGAAGATGACATTGAAT+TGG + chr5_2:73776317-73776336 Msa0787750:CDS 40.0%
GACTGGTGAATTAGAGAGTA+AGG + chr5_2:73776356-73776375 Msa0787750:CDS 40.0%
! TTTGGAGTTGACGAAGTCAA+AGG + chr5_2:73776380-73776399 Msa0787750:intron 40.0%
TGACGAAGTCAAAGGAAAAG+TGG + chr5_2:73776388-73776407 Msa0787750:intron 40.0%
GAGGAATGAAAGCAGCAAAT+TGG + chr5_2:73776503-73776522 Msa0787750:CDS 40.0%
CAAAGCCTCAAGTAATGTCT+CGG - chr5_2:73776547-73776566 None:intergenic 40.0%
!! CATTACTTGAGGCTTTGAAG+AGG + chr5_2:73776550-73776569 Msa0787750:CDS 40.0%
TGAAAGAGTAACAACGTTGG+AGG + chr5_2:73776590-73776609 Msa0787750:CDS 40.0%
! TCTATTGGTGGCAACAATGA+GGG + chr5_2:73776645-73776664 Msa0787750:CDS 40.0%
TCTTCAAAAGGATCAACCAC+AGG - chr5_2:73776729-73776748 None:intergenic 40.0%
TCGTCCTCGTTATCTTCAAA+AGG - chr5_2:73776741-73776760 None:intergenic 40.0%
CAATCACTAGTTGAGCATAC+TGG - chr5_2:73777020-73777039 None:intergenic 40.0%
GTACATACTCAATTAGCACC+AGG + chr5_2:73777136-73777155 Msa0787750:intron 40.0%
! TCAATTAGCACCGGGATATT+AGG + chr5_2:73777216-73777235 Msa0787750:intron 40.0%
AAGATGAACCTTAGAGAGGA+AGG - chr5_2:73777294-73777313 None:intergenic 40.0%
! AGCTGGATCTGATTTTCCTA+AGG + chr5_2:73777357-73777376 Msa0787750:intron 40.0%
! GTAATCTCAACCGTTTTCCT+GGG - chr5_2:73777718-73777737 None:intergenic 40.0%
! TGTAATCTCAACCGTTTTCC+TGG - chr5_2:73777719-73777738 None:intergenic 40.0%
AGGAAAACGGTTGAGATTAC+AGG + chr5_2:73777718-73777737 Msa0787750:CDS 40.0%
GGAAAACGGTTGAGATTACA+GGG + chr5_2:73777719-73777738 Msa0787750:CDS 40.0%
GTTATTCAGTAGCATGCAGA+AGG + chr5_2:73777756-73777775 Msa0787750:intron 40.0%
CAGAAAGAAAGCTTCCTCAA+GGG - chr5_2:73778029-73778048 None:intergenic 40.0%
TCAGAAAGAAAGCTTCCTCA+AGG - chr5_2:73778030-73778049 None:intergenic 40.0%
! GGATTTTCCTTGAAATGCTG+AGG + chr5_2:73778157-73778176 Msa0787750:intron 40.0%
! ATATCTCTTTTTGGACCAGC+CGG + chr5_2:73778287-73778306 Msa0787750:intron 40.0%
ATTTGCCAATGCAGTTGACA+CGG + chr5_2:73778484-73778503 Msa0787750:CDS 40.0%
ATGCAACCCAAAACTGAACC+TGG + chr5_2:73775781-73775800 Msa0787750:CDS 45.0%
TGCAACCCAAAACTGAACCT+GGG + chr5_2:73775782-73775801 Msa0787750:CDS 45.0%
TTTGTGGAATTGGAACCTGG+TGG - chr5_2:73775811-73775830 None:intergenic 45.0%
GCTTAGAGAGGAGTTTCACT+TGG + chr5_2:73775999-73776018 Msa0787750:CDS 45.0%
TGAAAGCAGCAAATTGGCAG+AGG + chr5_2:73776509-73776528 Msa0787750:CDS 45.0%
GCGTGAAAGAGTAACAACGT+TGG + chr5_2:73776587-73776606 Msa0787750:CDS 45.0%
CTCATTGTTGCCACCAATAG+AGG - chr5_2:73776646-73776665 None:intergenic 45.0%
! CTCTATTGGTGGCAACAATG+AGG + chr5_2:73776644-73776663 Msa0787750:CDS 45.0%
! CTATTGGTGGCAACAATGAG+GGG + chr5_2:73776646-73776665 Msa0787750:CDS 45.0%
! TATTGGTGGCAACAATGAGG+GGG + chr5_2:73776647-73776666 Msa0787750:CDS 45.0%
TCTTCAGAACTTGGAACCAC+TGG - chr5_2:73776687-73776706 None:intergenic 45.0%
AAAGGGATCAAGGATGCTCA+AGG + chr5_2:73776876-73776895 Msa0787750:CDS 45.0%
GATGCTCAAGGTTCATCATC+AGG + chr5_2:73776888-73776907 Msa0787750:CDS 45.0%
AGCTTCTTCCTTCCTCTCTA+AGG + chr5_2:73777283-73777302 Msa0787750:intron 45.0%
!! AGTAGCATTGACAGGAACTG+TGG + chr5_2:73777387-73777406 Msa0787750:intron 45.0%
! TTTCTGCAGGTGAAGAGTGT+TGG + chr5_2:73777674-73777693 Msa0787750:intron 45.0%
GTTGAGATTACAGGGTCTTG+TGG + chr5_2:73777727-73777746 Msa0787750:CDS 45.0%
! TGTTGAGGTTTGGTAGCAAG+TGG + chr5_2:73777893-73777912 Msa0787750:intron 45.0%
GATTTCTTCCTCATCCCTTG+AGG + chr5_2:73778012-73778031 Msa0787750:intron 45.0%
TTACTTGAAGATCCAGTGGC+TGG + chr5_2:73778136-73778155 Msa0787750:intron 45.0%
TTCAAGGAAAATCCAGCCAC+TGG - chr5_2:73778151-73778170 None:intergenic 45.0%
CTAGTAGCCTCAGCATTTCA+AGG - chr5_2:73778167-73778186 None:intergenic 45.0%
TTCCAGTTTCACTCTTCCAC+CGG - chr5_2:73778309-73778328 None:intergenic 45.0%
TGAAGAGCCAAGTTCATCAG+CGG + chr5_2:73778436-73778455 Msa0787750:CDS 45.0%
TTTGACCGTGTCAACTGCAT+TGG - chr5_2:73778492-73778511 None:intergenic 45.0%
! GGTGACCCAGGTTCAGTTTT+GGG - chr5_2:73775790-73775809 None:intergenic 50.0%
! TGGTGACCCAGGTTCAGTTT+TGG - chr5_2:73775791-73775810 None:intergenic 50.0%
! GGCTTTGTGGAATTGGAACC+TGG - chr5_2:73775814-73775833 None:intergenic 50.0%
GAGGGATATGAGACTCAGAG+AGG + chr5_2:73775933-73775952 Msa0787750:CDS 50.0%
TGGCAACGATGAGTGAGTTG+AGG + chr5_2:73776484-73776503 Msa0787750:CDS 50.0%
CGAAGCCGAGACATTACTTG+AGG + chr5_2:73776539-73776558 Msa0787750:CDS 50.0%
TCGGGCTTAGATGCCTCTAT+TGG + chr5_2:73776630-73776649 Msa0787750:CDS 50.0%
GGCTTAGATGCCTCTATTGG+TGG + chr5_2:73776633-73776652 Msa0787750:CDS 50.0%
!! TCCAAGTTCTGAAGAGAGCG+AGG + chr5_2:73776692-73776711 Msa0787750:intron 50.0%
TCCTCGCTCTCTTCAGAACT+TGG - chr5_2:73776696-73776715 None:intergenic 50.0%
GATAACGAGGACGAGAATGC+TGG + chr5_2:73776747-73776766 Msa0787750:CDS 50.0%
AGTACTCAGTCACCGAGCAA+AGG + chr5_2:73776858-73776877 Msa0787750:CDS 50.0%
GTACTCAGTCACCGAGCAAA+GGG + chr5_2:73776859-73776878 Msa0787750:CDS 50.0%
GCATCCTTGATCCCTTTGCT+CGG - chr5_2:73776873-73776892 None:intergenic 50.0%
! CTAGCTTGGGCTAGGTAACA+TGG - chr5_2:73777321-73777340 None:intergenic 50.0%
! AGAGAGCCAAGAGCTAGCTT+GGG - chr5_2:73777334-73777353 None:intergenic 50.0%
AAGAGAGCCAAGAGCTAGCT+TGG - chr5_2:73777335-73777354 None:intergenic 50.0%
!! TGCAGGTGAAGAGTGTTGGA+TGG + chr5_2:73777678-73777697 Msa0787750:intron 50.0%
TGGTATACGCTAGAAAGCCC+AGG + chr5_2:73777698-73777717 Msa0787750:CDS 50.0%
CGCTAGAAAGCCCAGGAAAA+CGG + chr5_2:73777705-73777724 Msa0787750:CDS 50.0%
! GAGATTACAGGGTCTTGTGG+AGG + chr5_2:73777730-73777749 Msa0787750:CDS 50.0%
! GTAGCATGCAGAAGGTGTAG+TGG + chr5_2:73777764-73777783 Msa0787750:intron 50.0%
GAAAGCTTCCTCAAGGGATG+AGG - chr5_2:73778023-73778042 None:intergenic 50.0%
GGAACCACTGGATCAGCAGA+AGG - chr5_2:73776675-73776694 None:intergenic 55.0%
GTCACCGAGCAAAGGGATCA+AGG + chr5_2:73776866-73776885 Msa0787750:CDS 55.0%
! ACCTAGCCCAAGCTAGCTCT+TGG + chr5_2:73777325-73777344 Msa0787750:intron 55.0%
! GCTCTTGGCTCTCTTGTAGC+TGG + chr5_2:73777340-73777359 Msa0787750:intron 55.0%
! TCTCTTTTTGGACCAGCCGG+TGG + chr5_2:73778290-73778309 Msa0787750:intron 55.0%
AGTTTCACTCTTCCACCGGC+TGG - chr5_2:73778305-73778324 None:intergenic 55.0%
AGCCGGTGGAAGAGTGAAAC+TGG + chr5_2:73778304-73778323 Msa0787750:intron 55.0%
CATCGTCGTCGTCGTCATCA+AGG - chr5_2:73778352-73778371 None:intergenic 55.0%
ACTGAACCTGGGTCACCACC+AGG + chr5_2:73775793-73775812 Msa0787750:CDS 60.0%
! TTGGAACCTGGTGGTGACCC+AGG - chr5_2:73775802-73775821 None:intergenic 60.0%
GGAGCCTTCTGCTGATCCAG+TGG + chr5_2:73776668-73776687 Msa0787750:CDS 60.0%
! CGAGGAAGAGCGTGTTCCTG+TGG + chr5_2:73776710-73776729 Msa0787750:CDS 60.0%
! GCCAAGAGCTAGCTTGGGCT+AGG - chr5_2:73777329-73777348 None:intergenic 60.0%
GCCAAGTTCATCAGCGGCAC+TGG + chr5_2:73778442-73778461 Msa0787750:CDS 60.0%
! GCCAGTGCCGCTGATGAACT+TGG - chr5_2:73778446-73778465 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 73775722 73778547 73775722 ID=Msa0787750;Name=Msa0787750
chr5_2 mRNA 73775722 73778547 73775722 ID=Msa0787750-mRNA-1;Parent=Msa0787750;Name=Msa0787750-mRNA-1;_AED=0.18;_eAED=0.18;_QI=59|0.33|0.14|1|0.33|0.28|7|0|447
chr5_2 exon 73775722 73775910 73775722 ID=Msa0787750-mRNA-1:exon:22464;Parent=Msa0787750-mRNA-1
chr5_2 exon 73775920 73776125 73775920 ID=Msa0787750-mRNA-1:exon:22465;Parent=Msa0787750-mRNA-1
chr5_2 exon 73776132 73776377 73776132 ID=Msa0787750-mRNA-1:exon:22466;Parent=Msa0787750-mRNA-1
chr5_2 exon 73776444 73776689 73776444 ID=Msa0787750-mRNA-1:exon:22467;Parent=Msa0787750-mRNA-1
chr5_2 exon 73776708 73776909 73776708 ID=Msa0787750-mRNA-1:exon:22468;Parent=Msa0787750-mRNA-1
chr5_2 exon 73777683 73777751 73777683 ID=Msa0787750-mRNA-1:exon:22469;Parent=Msa0787750-mRNA-1
chr5_2 exon 73778306 73778547 73778306 ID=Msa0787750-mRNA-1:exon:22470;Parent=Msa0787750-mRNA-1
chr5_2 five_prime_UTR 73775722 73775780 73775722 ID=Msa0787750-mRNA-1:five_prime_utr;Parent=Msa0787750-mRNA-1
chr5_2 CDS 73775781 73775910 73775781 ID=Msa0787750-mRNA-1:cds;Parent=Msa0787750-mRNA-1
chr5_2 CDS 73775920 73776125 73775920 ID=Msa0787750-mRNA-1:cds;Parent=Msa0787750-mRNA-1
chr5_2 CDS 73776132 73776377 73776132 ID=Msa0787750-mRNA-1:cds;Parent=Msa0787750-mRNA-1
chr5_2 CDS 73776444 73776689 73776444 ID=Msa0787750-mRNA-1:cds;Parent=Msa0787750-mRNA-1
chr5_2 CDS 73776708 73776909 73776708 ID=Msa0787750-mRNA-1:cds;Parent=Msa0787750-mRNA-1
chr5_2 CDS 73777683 73777751 73777683 ID=Msa0787750-mRNA-1:cds;Parent=Msa0787750-mRNA-1
chr5_2 CDS 73778306 73778547 73778306 ID=Msa0787750-mRNA-1:cds;Parent=Msa0787750-mRNA-1
Gene Sequence

>Msa0787750

ATGCAACCCAAAACTGAACCTGGGTCACCACCAGGTTCCAATTCCACAAAGCCTAACAAGCTTGAAGACAAGTCTATTCATGATCTTGTTATGGTACTACGTGGAACTTGTCAATGGGAAACTTTTGATACTGTTTTGGAGAAGAGGGATATGAGACTCAGAGAGGAGAATCAAAAGTTGCAACAAAGCTTTGAAATGGAGAGATTAAAGCTTAGAGAGGAGTTTCACTTGGAGAGACTTTCAAGGGTGTATGCTGAGTCTGAATTTAAGAAAAGAGAGGAAATTTGTGAGAAAGGGAAGAAAGTGCAAGAAAGTTATGAAGCTCTTTTGAAAGAAGTAAATAGATTAGCTGATAGAAAAACTAATGAAGAGTTAGAAAAGAAGAACAATGAATTGGAGGTTGAAATTAAGAATTTGAAGGAGAAATGTGTTGATCGTAGCAATGAAGTTGATGTCTTAAGAACAGAGATTGTTGAATTAGAGGATGGAGTTTTAGAGTTAAAGAAGATTAAGAAAAAATGGGAGGAAGATGACATTGAATTGGGTGAATTAAGAAAAATGACTGGTGAATTAGAGAGTAAGGTTAAAATTGAAGAATTGGAGGAGACAGTAAAGAAGAATTTGGCAACGATGAGTGAGTTGAGGAATGAAAGCAGCAAATTGGCAGAGGAGAAGCGCGAAGCCGAGACATTACTTGAGGCTTTGAAGAGGAAGTTTATTCGACTGCGTGAAAGAGTAACAACGTTGGAGGAAGATCTCATTCTTTTGTCGGGCTTAGATGCCTCTATTGGTGGCAACAATGAGGGGGAGCCTTCTGCTGATCCAGTGAGCGAGGAAGAGCGTGTTCCTGTGGTTGATCCTTTTGAAGATAACGAGGACGAGAATGCTGGTGAAGATGAGTTCATAAATGACATTGTTGACGAGGCCGCTCCTTTACCAATAAATCAAGATGATCATTACACTCTTGGAGTTGCTGCTAGTACTCAGTCACCGAGCAAAGGGATCAAGGATGCTCAAGGTTCATCATCAGGTGAAGAGTGTTGGATGGTATACGCTAGAAAGCCCAGGAAAACGGTTGAGATTACAGGGTCTTGTGGAGCCGGTGGAAGAGTGAAACTGGAAAATGAGATTGAGATCATAAACCTTGATGACGACGACGACGATGATGATCAATCTATGTCTCAAGGAGTACATTTAAAGAAAGCTAGTTTTGGAATGACTGTGAAGATTGAAGAGCCAAGTTCATCAGCGGCACTGGCAACACAACAAAAAAGCAAATTTGCCAATGCAGTTGACACGGTCAAAAGAAAATTTTCTTTCAGCGACAGTGAAACATTGTTG

Protein sequence

>Msa0787750

MQPKTEPGSPPGSNSTKPNKLEDKSIHDLVMVLRGTCQWETFDTVLEKRDMRLREENQKLQQSFEMERLKLREEFHLERLSRVYAESEFKKREEICEKGKKVQESYEALLKEVNRLADRKTNEELEKKNNELEVEIKNLKEKCVDRSNEVDVLRTEIVELEDGVLELKKIKKKWEEDDIELGELRKMTGELESKVKIEELEETVKKNLATMSELRNESSKLAEEKREAETLLEALKRKFIRLRERVTTLEEDLILLSGLDASIGGNNEGEPSADPVSEEERVPVVDPFEDNEDENAGEDEFINDIVDEAAPLPINQDDHYTLGVAASTQSPSKGIKDAQGSSSGEECWMVYARKPRKTVEITGSCGAGGRVKLENEIEIINLDDDDDDDDQSMSQGVHLKKASFGMTVKIEEPSSSAALATQQKSKFANAVDTVKRKFSFSDSETLL