Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0797830 | XP_003614785.1 | 86.008 | 243 | 18 | 2 | 1 | 227 | 1 | 243 | 1.59e-145 | 417 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0797830 | sp|Q5DWG1|CRJ35_CRYJA | 48.430 | 223 | 93 | 4 | 12 | 214 | 8 | 228 | 2.41e-66 | 207 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0797830 | G7K8X4 | 86.008 | 243 | 18 | 2 | 1 | 227 | 1 | 243 | 7.58e-146 | 417 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0649840 | Msa0797830 | 0.812374 | 4.378627e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0797830 | MtrunA17_Chr5g0424221 | 86.008 | 243 | 18 | 2 | 1 | 227 | 1 | 243 | 1.46e-149 | 417 |
| Msa0797830 | MtrunA17_Chr8g0392961 | 49.528 | 212 | 82 | 6 | 33 | 219 | 31 | 242 | 4.72e-59 | 186 |
| Msa0797830 | MtrunA17_Chr1g0154591 | 47.170 | 212 | 88 | 4 | 27 | 214 | 11 | 222 | 1.32e-58 | 185 |
| Msa0797830 | MtrunA17_Chr6g0482741 | 42.678 | 239 | 111 | 6 | 8 | 223 | 1 | 236 | 7.52e-58 | 183 |
| Msa0797830 | MtrunA17_Chr8g0371771 | 44.344 | 221 | 100 | 4 | 13 | 213 | 15 | 232 | 8.48e-58 | 185 |
| Msa0797830 | MtrunA17_Chr8g0351851 | 45.933 | 209 | 90 | 5 | 28 | 213 | 19 | 227 | 3.62e-57 | 181 |
| Msa0797830 | MtrunA17_Chr8g0357311 | 43.612 | 227 | 102 | 5 | 14 | 214 | 11 | 237 | 2.86e-56 | 179 |
| Msa0797830 | MtrunA17_Chr7g0239131 | 42.995 | 207 | 94 | 4 | 31 | 213 | 25 | 231 | 6.45e-55 | 176 |
| Msa0797830 | MtrunA17_Chr3g0141341 | 45.755 | 212 | 91 | 5 | 27 | 214 | 10 | 221 | 1.13e-54 | 175 |
| Msa0797830 | MtrunA17_Chr3g0112091 | 41.126 | 231 | 106 | 6 | 8 | 213 | 1 | 226 | 1.55e-54 | 174 |
| Msa0797830 | MtrunA17_Chr8g0352471 | 42.920 | 226 | 103 | 5 | 14 | 213 | 11 | 236 | 2.08e-54 | 177 |
| Msa0797830 | MtrunA17_Chr8g0371781 | 44.954 | 218 | 89 | 5 | 28 | 214 | 27 | 244 | 5.48e-54 | 175 |
| Msa0797830 | MtrunA17_Chr5g0405611 | 43.750 | 224 | 101 | 6 | 11 | 214 | 80 | 298 | 1.14e-53 | 176 |
| Msa0797830 | MtrunA17_Chr4g0037331 | 45.714 | 210 | 88 | 6 | 27 | 213 | 23 | 229 | 1.14e-53 | 176 |
| Msa0797830 | MtrunA17_Chr5g0405581 | 42.623 | 244 | 107 | 8 | 1 | 214 | 1 | 241 | 1.79e-53 | 174 |
| Msa0797830 | MtrunA17_Chr5g0428801 | 43.256 | 215 | 93 | 6 | 28 | 213 | 25 | 239 | 4.62e-53 | 173 |
| Msa0797830 | MtrunA17_Chr1g0156711 | 44.628 | 242 | 94 | 11 | 4 | 214 | 3 | 235 | 1.31e-52 | 172 |
| Msa0797830 | MtrunA17_Chr3g0142781 | 42.373 | 236 | 109 | 8 | 6 | 214 | 3 | 238 | 8.01e-50 | 165 |
| Msa0797830 | MtrunA17_Chr6g0452331 | 41.365 | 249 | 108 | 10 | 4 | 221 | 9 | 250 | 9.34e-50 | 163 |
| Msa0797830 | MtrunA17_Chr2g0311551 | 39.035 | 228 | 105 | 6 | 15 | 216 | 17 | 236 | 5.76e-45 | 160 |
| Msa0797830 | MtrunA17_Chr2g0311521 | 38.912 | 239 | 117 | 7 | 7 | 216 | 1 | 239 | 6.67e-45 | 160 |
| Msa0797830 | MtrunA17_Chr4g0031221 | 40.187 | 214 | 101 | 9 | 28 | 214 | 28 | 241 | 1.47e-44 | 149 |
| Msa0797830 | MtrunA17_Chr2g0311561 | 40.187 | 214 | 102 | 6 | 27 | 214 | 9 | 222 | 1.95e-44 | 150 |
| Msa0797830 | MtrunA17_Chr1g0180161 | 42.029 | 207 | 96 | 6 | 32 | 214 | 25 | 231 | 4.66e-44 | 148 |
| Msa0797830 | MtrunA17_Chr1g0180121 | 38.528 | 231 | 112 | 7 | 9 | 214 | 6 | 231 | 5.24e-44 | 147 |
| Msa0797830 | MtrunA17_Chr4g0037351 | 39.669 | 242 | 114 | 7 | 1 | 214 | 1 | 238 | 1.95e-43 | 149 |
| Msa0797830 | MtrunA17_Chr2g0312181 | 38.075 | 239 | 116 | 7 | 1 | 214 | 1 | 232 | 3.09e-43 | 145 |
| Msa0797830 | MtrunA17_Chr1g0179851 | 41.063 | 207 | 96 | 6 | 32 | 213 | 22 | 227 | 1.17e-41 | 141 |
| Msa0797830 | MtrunA17_Chr1g0179891 | 37.607 | 234 | 112 | 8 | 5 | 213 | 1 | 225 | 1.26e-41 | 141 |
| Msa0797830 | MtrunA17_Chr1g0180231 | 40.097 | 207 | 98 | 6 | 32 | 213 | 25 | 230 | 2.91e-41 | 140 |
| Msa0797830 | MtrunA17_Chr1g0179871 | 40.097 | 207 | 98 | 6 | 32 | 213 | 25 | 230 | 2.91e-41 | 140 |
| Msa0797830 | MtrunA17_Chr7g0265011 | 34.615 | 234 | 129 | 6 | 4 | 213 | 42 | 275 | 7.94e-41 | 140 |
| Msa0797830 | MtrunA17_Chr1g0180221 | 40.097 | 207 | 98 | 6 | 32 | 213 | 65 | 270 | 1.69e-40 | 140 |
| Msa0797830 | MtrunA17_Chr5g0397821 | 40.654 | 214 | 96 | 8 | 28 | 224 | 23 | 222 | 9.59e-38 | 131 |
| Msa0797830 | MtrunA17_Chr8g0386341 | 38.158 | 228 | 109 | 9 | 3 | 213 | 24 | 236 | 1.04e-36 | 129 |
| Msa0797830 | MtrunA17_Chr5g0397831 | 36.515 | 241 | 108 | 8 | 1 | 213 | 1 | 224 | 2.03e-35 | 125 |
| Msa0797830 | MtrunA17_Chr2g0311531 | 38.974 | 195 | 87 | 6 | 31 | 208 | 29 | 208 | 1.35e-34 | 124 |
| Msa0797830 | MtrunA17_Chr2g0311501 | 38.650 | 163 | 75 | 5 | 68 | 205 | 2 | 164 | 1.16e-30 | 112 |
| Msa0797830 | MtrunA17_Chr5g0406771 | 39.130 | 161 | 74 | 5 | 31 | 167 | 15 | 175 | 5.02e-30 | 109 |
| Msa0797830 | MtrunA17_Chr2g0309611 | 28.139 | 231 | 131 | 8 | 7 | 206 | 8 | 234 | 8.73e-23 | 92.8 |
| Msa0797830 | MtrunA17_Chr1g0179911 | 28.448 | 232 | 131 | 8 | 5 | 213 | 7 | 226 | 4.13e-22 | 90.9 |
| Msa0797830 | MtrunA17_Chr8g0386351 | 34.637 | 179 | 92 | 6 | 1 | 163 | 37 | 206 | 1.26e-21 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0797830 | AT1G77700.3 | 64.384 | 219 | 62 | 2 | 11 | 213 | 43 | 261 | 1.57e-98 | 290 |
| Msa0797830 | AT1G77700.2 | 62.009 | 229 | 71 | 2 | 1 | 213 | 33 | 261 | 4.30e-98 | 288 |
| Msa0797830 | AT1G77700.1 | 64.762 | 210 | 58 | 2 | 20 | 213 | 80 | 289 | 8.58e-95 | 281 |
| Msa0797830 | AT1G19320.1 | 44.053 | 227 | 101 | 4 | 13 | 213 | 10 | 236 | 8.88e-60 | 188 |
| Msa0797830 | AT1G75030.1 | 46.222 | 225 | 95 | 6 | 13 | 213 | 10 | 232 | 3.16e-58 | 184 |
| Msa0797830 | AT1G18250.1 | 47.059 | 221 | 91 | 7 | 27 | 224 | 19 | 236 | 5.99e-58 | 184 |
| Msa0797830 | AT1G75050.1 | 43.805 | 226 | 104 | 5 | 11 | 213 | 7 | 232 | 7.87e-58 | 183 |
| Msa0797830 | AT1G18250.2 | 46.396 | 222 | 93 | 7 | 26 | 224 | 19 | 237 | 1.13e-57 | 183 |
| Msa0797830 | AT1G75040.1 | 43.534 | 232 | 102 | 5 | 2 | 213 | 6 | 228 | 4.04e-57 | 181 |
| Msa0797830 | AT1G73620.1 | 44.796 | 221 | 96 | 6 | 27 | 224 | 40 | 257 | 3.47e-55 | 177 |
| Msa0797830 | AT4G38660.1 | 41.921 | 229 | 104 | 6 | 9 | 214 | 13 | 235 | 5.13e-52 | 172 |
| Msa0797830 | AT4G38660.2 | 44.231 | 208 | 90 | 5 | 30 | 214 | 9 | 213 | 1.46e-51 | 170 |
| Msa0797830 | AT5G02140.2 | 42.308 | 208 | 95 | 4 | 31 | 213 | 23 | 230 | 2.95e-51 | 167 |
| Msa0797830 | AT5G02140.1 | 42.308 | 208 | 95 | 4 | 31 | 213 | 23 | 230 | 4.19e-51 | 168 |
| Msa0797830 | AT5G24620.1 | 41.453 | 234 | 106 | 6 | 11 | 213 | 7 | 240 | 5.30e-51 | 171 |
| Msa0797830 | AT5G24620.4 | 41.453 | 234 | 106 | 6 | 11 | 213 | 62 | 295 | 5.81e-51 | 172 |
| Msa0797830 | AT5G24620.3 | 41.453 | 234 | 106 | 6 | 11 | 213 | 83 | 316 | 8.22e-51 | 172 |
| Msa0797830 | AT1G75800.1 | 42.324 | 241 | 102 | 8 | 7 | 214 | 1 | 237 | 8.26e-51 | 168 |
| Msa0797830 | AT4G24180.3 | 42.194 | 237 | 99 | 8 | 7 | 212 | 15 | 244 | 1.37e-49 | 165 |
| Msa0797830 | AT4G24180.4 | 44.811 | 212 | 83 | 7 | 32 | 212 | 31 | 239 | 1.77e-49 | 164 |
| Msa0797830 | AT4G24180.6 | 41.597 | 238 | 101 | 8 | 7 | 213 | 15 | 245 | 1.96e-48 | 160 |
| Msa0797830 | AT4G24180.5 | 43.721 | 215 | 87 | 7 | 30 | 213 | 29 | 240 | 5.85e-48 | 159 |
| Msa0797830 | AT4G24180.1 | 41.597 | 238 | 101 | 8 | 7 | 213 | 15 | 245 | 7.57e-48 | 160 |
| Msa0797830 | AT1G20030.1 | 42.478 | 226 | 99 | 8 | 28 | 224 | 2 | 225 | 1.17e-47 | 159 |
| Msa0797830 | AT2G28790.2 | 39.744 | 234 | 112 | 9 | 9 | 214 | 31 | 263 | 1.39e-47 | 158 |
| Msa0797830 | AT1G20030.2 | 42.920 | 226 | 98 | 9 | 28 | 224 | 19 | 242 | 1.44e-47 | 159 |
| Msa0797830 | AT2G28790.1 | 39.744 | 234 | 112 | 9 | 9 | 214 | 6 | 238 | 2.08e-47 | 157 |
| Msa0797830 | AT4G24180.2 | 43.721 | 215 | 87 | 7 | 30 | 213 | 29 | 240 | 2.22e-47 | 159 |
| Msa0797830 | AT5G40020.1 | 38.174 | 241 | 119 | 8 | 1 | 214 | 1 | 238 | 5.20e-47 | 156 |
| Msa0797830 | AT2G17860.1 | 42.009 | 219 | 96 | 7 | 27 | 214 | 21 | 239 | 9.61e-47 | 155 |
| Msa0797830 | AT4G36010.1 | 42.466 | 219 | 94 | 7 | 27 | 213 | 21 | 239 | 5.01e-45 | 152 |
| Msa0797830 | AT4G36010.2 | 42.466 | 219 | 94 | 7 | 27 | 213 | 21 | 239 | 5.01e-45 | 152 |
| Msa0797830 | AT4G38670.3 | 41.509 | 212 | 96 | 7 | 31 | 214 | 25 | 236 | 2.22e-44 | 150 |
| Msa0797830 | AT4G38670.1 | 41.509 | 212 | 96 | 7 | 31 | 214 | 25 | 236 | 2.22e-44 | 150 |
| Msa0797830 | AT4G38670.2 | 41.176 | 221 | 101 | 8 | 31 | 223 | 9 | 228 | 3.65e-44 | 149 |
| Msa0797830 | AT5G38280.1 | 37.238 | 239 | 119 | 7 | 7 | 214 | 1 | 239 | 4.20e-40 | 145 |
| Msa0797830 | AT5G38280.2 | 37.238 | 239 | 119 | 7 | 7 | 214 | 1 | 239 | 5.13e-40 | 145 |
| Msa0797830 | AT4G18253.1 | 33.028 | 218 | 123 | 5 | 9 | 206 | 5 | 219 | 1.22e-34 | 124 |
| Msa0797830 | AT4G11650.1 | 39.070 | 215 | 99 | 8 | 27 | 224 | 21 | 220 | 2.20e-34 | 123 |
| Msa0797830 | AT4G36000.2 | 48.889 | 135 | 52 | 5 | 87 | 214 | 4 | 128 | 5.14e-33 | 119 |
| Msa0797830 | AT4G36000.1 | 48.889 | 135 | 52 | 5 | 87 | 214 | 4 | 128 | 5.14e-33 | 119 |
| Msa0797830 | AT1G70250.1 | 35.437 | 206 | 103 | 7 | 28 | 205 | 144 | 347 | 1.27e-32 | 125 |
| Msa0797830 | AT4G18250.1 | 34.862 | 218 | 114 | 7 | 10 | 204 | 39 | 251 | 1.01e-28 | 114 |
| Msa0797830 | AT5G24620.2 | 48.039 | 102 | 42 | 3 | 116 | 206 | 15 | 116 | 1.48e-24 | 99.0 |
| Msa0797830 | AT2G24810.1 | 50.746 | 67 | 29 | 1 | 151 | 213 | 116 | 182 | 4.76e-13 | 65.9 |
Find 67 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGAGGATTGTCCTTGTTTA+AGG | 0.171240 | 5_3:-10149805 | None:intergenic |
| TATTGTTGTAGAGGAAATTT+TGG | 0.182203 | 5_3:+10150193 | Msa0797830:intron |
| TAAGTTGGAGTGGCCGAATT+TGG | 0.220125 | 5_3:+10149843 | Msa0797830:CDS |
| CTTTGGCCAGCTGTGTTTCC+AGG | 0.226022 | 5_3:+10149755 | Msa0797830:CDS |
| CTTTGGGACAAGTTAATCTT+AGG | 0.252225 | 5_3:-10150099 | None:intergenic |
| AGACTTAACGGAAAGTTCTT+TGG | 0.271584 | 5_3:-10150116 | None:intergenic |
| GGCATTGTCCGTCTCCATTT+TGG | 0.275296 | 5_3:-10149889 | None:intergenic |
| GGCCGAATTTGGGCTCGATC+TGG | 0.299439 | 5_3:+10149854 | Msa0797830:CDS |
| ATTCGGCCACTCCAACTTAC+TGG | 0.329779 | 5_3:-10149839 | None:intergenic |
| GTTTATCGGCTTAACAGAAA+TGG | 0.331307 | 5_3:-10150038 | None:intergenic |
| CTCCTTGCAATAGTTTACTA+TGG | 0.349337 | 5_3:-10149729 | None:intergenic |
| GGGTGCAACTTTGACCAAAA+TGG | 0.350387 | 5_3:+10149875 | Msa0797830:CDS |
| ACTATTGCAAGGAGACTCTT+TGG | 0.364386 | 5_3:+10149738 | Msa0797830:CDS |
| GACTTAACGGAAAGTTCTTT+GGG | 0.366979 | 5_3:-10150115 | None:intergenic |
| TCAGCTCTTAGTTTGTGAAT+TGG | 0.381658 | 5_3:+10150598 | Msa0797830:three_prime_UTR |
| AAGTTGGAGTGGCCGAATTT+GGG | 0.393680 | 5_3:+10149844 | Msa0797830:CDS |
| GGTCTTTCCGTTAGACTTAA+CGG | 0.394785 | 5_3:-10150128 | None:intergenic |
| AAAGTTGGTCTACAAGTAGA+AGG | 0.396689 | 5_3:-10150220 | None:intergenic |
| CAGGCTAACATCGTAGAAAT+CGG | 0.404148 | 5_3:-10149996 | None:intergenic |
| ACCCAGATCGAGCCCAAATT+CGG | 0.404436 | 5_3:-10149856 | None:intergenic |
| TACAATGAAGTTTGTGATCA+TGG | 0.414865 | 5_3:-10150513 | None:intergenic |
| ATTTCTGTTAAGCCGATAAA+CGG | 0.435167 | 5_3:+10150040 | Msa0797830:CDS |
| CAAGGCTTAAGGTCGTTGAT+TGG | 0.442016 | 5_3:+10150544 | Msa0797830:exon |
| GCCGAATTTGGGCTCGATCT+GGG | 0.445449 | 5_3:+10149855 | Msa0797830:CDS |
| ATTGCAAGAACCAATGAGAT+AGG | 0.449008 | 5_3:-10149581 | None:intergenic |
| AAAGGAAATTGCTCAACTGC+TGG | 0.462531 | 5_3:+10150064 | Msa0797830:CDS |
| TTTATCGGCTTAACAGAAAT+GGG | 0.466301 | 5_3:-10150037 | None:intergenic |
| GTGAATTCAGCGAGTGATGC+TGG | 0.466704 | 5_3:-10149962 | None:intergenic |
| TTTGGCCAGCTGTGTTTCCA+GGG | 0.472817 | 5_3:+10149756 | Msa0797830:CDS |
| GTGTCAATGTCTCATGCATA+TGG | 0.477542 | 5_3:+10150737 | Msa0797830:three_prime_UTR |
| TAAGCATAACTATAAGAAGT+TGG | 0.500482 | 5_3:-10150271 | None:intergenic |
| GGAGACGGACAATGCCAAAC+CGG | 0.501682 | 5_3:+10149896 | Msa0797830:CDS |
| GTAGTGGATCACAAGGCTTA+AGG | 0.505982 | 5_3:+10150533 | Msa0797830:CDS |
| TGGTGCCGCATGCACCGGTT+TGG | 0.510778 | 5_3:-10149910 | None:intergenic |
| GTTAAGCCGATAAACGGAAA+AGG | 0.526454 | 5_3:+10150046 | Msa0797830:CDS |
| GAACTTTCCGTTAAGTCTAA+CGG | 0.532105 | 5_3:+10150121 | Msa0797830:CDS |
| GGGGAACATTTCAACGGCGG+AGG | 0.542017 | 5_3:+10149776 | Msa0797830:CDS |
| TAAGGTCGTTGATTGGAAGC+TGG | 0.542809 | 5_3:+10150551 | Msa0797830:exon |
| CCGCCGTTGAAATGTTCCCC+TGG | 0.544537 | 5_3:-10149773 | None:intergenic |
| TGTTCACCGCTCCAGTAAGT+TGG | 0.544607 | 5_3:+10149828 | Msa0797830:CDS |
| AGGCTAACATCGTAGAAATC+GGG | 0.545180 | 5_3:-10149995 | None:intergenic |
| TGTTCCCCTGGAAACACAGC+TGG | 0.551986 | 5_3:-10149761 | None:intergenic |
| TACGATGTTAGCCTGGTCGA+TGG | 0.555169 | 5_3:+10150004 | Msa0797830:CDS |
| AGTCTAACGGAAAGACCGTT+GGG | 0.555398 | 5_3:+10150134 | Msa0797830:CDS |
| CTTCATTGTAGTGGATCACA+AGG | 0.557221 | 5_3:+10150526 | Msa0797830:CDS |
| CGATTTCTACGATGTTAGCC+TGG | 0.559082 | 5_3:+10149997 | Msa0797830:CDS |
| TTGGCCAGCTGTGTTTCCAG+GGG | 0.561804 | 5_3:+10149757 | Msa0797830:CDS |
| GCACATTGAAGCCATCGACC+AGG | 0.570162 | 5_3:-10150015 | None:intergenic |
| TGTGACTGCTATGATTGATA+AGG | 0.574826 | 5_3:-10149487 | None:intergenic |
| CACCATAGTAAACTATTGCA+AGG | 0.587972 | 5_3:+10149727 | Msa0797830:CDS |
| GGTCGTTGATTGGAAGCTGG+TGG | 0.589964 | 5_3:+10150554 | Msa0797830:three_prime_UTR |
| GATCACAAACTTCATTGTAG+TGG | 0.593624 | 5_3:+10150517 | Msa0797830:CDS |
| TTTCCAGGGGAACATTTCAA+CGG | 0.596071 | 5_3:+10149770 | Msa0797830:CDS |
| AAGTCTAACGGAAAGACCGT+TGG | 0.602579 | 5_3:+10150133 | Msa0797830:CDS |
| ACCGCTCCAGTAAGTTGGAG+TGG | 0.605036 | 5_3:+10149833 | Msa0797830:CDS |
| AAGTTGGTCTACAAGTAGAA+GGG | 0.606099 | 5_3:-10150219 | None:intergenic |
| AGTTCACAGAGAAAATAAAA+CGG | 0.606687 | 5_3:-10150660 | None:intergenic |
| GGAGGATTCGTCCTTAAACA+AGG | 0.613851 | 5_3:+10149794 | Msa0797830:CDS |
| AACTTTGACCAAAATGGAGA+CGG | 0.614713 | 5_3:+10149881 | Msa0797830:CDS |
| ACTTACTGGAGCGGTGAACA+CGG | 0.633829 | 5_3:-10149825 | None:intergenic |
| ACAAGCACTTCGACACCCAA+CGG | 0.634259 | 5_3:-10150149 | None:intergenic |
| TTATTCAAAGAAGTTTAAGG+AGG | 0.640012 | 5_3:+10150243 | Msa0797830:CDS |
| CTGGTGGATAGCAATGATGA+TGG | 0.640894 | 5_3:+10150570 | Msa0797830:three_prime_UTR |
| GCCACTCCAACTTACTGGAG+CGG | 0.645829 | 5_3:-10149834 | None:intergenic |
| AAAATCATAGCAGTCACACA+TGG | 0.647254 | 5_3:+10149535 | Msa0797830:exon |
| CCAGGGGAACATTTCAACGG+CGG | 0.654456 | 5_3:+10149773 | Msa0797830:CDS |
| TACTGGAGCGGTGAACACGG+AGG | 0.748549 | 5_3:-10149822 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATTCAAAGAAGTTTA+AGG | + | chr5_3:10150240-10150259 | Msa0797830:CDS | 15.0% |
| !!! | ATAATATTCCATTAACATTT+TGG | - | chr5_3:10150431-10150450 | None:intergenic | 15.0% |
| !! | TAATGGAATATTATATTGAT+TGG | + | chr5_3:10150437-10150456 | Msa0797830:intron | 15.0% |
| !!! | CTAACTTTAATGTTTTAATT+TGG | + | chr5_3:10150462-10150481 | Msa0797830:intron | 15.0% |
| !!! | ATTTTATGAGTTTGTATAAA+TGG | + | chr5_3:10150635-10150654 | Msa0797830:three_prime_UTR | 15.0% |
| !! | TATATTGTTCTACATAAAAA+AGG | + | chr5_3:10150707-10150726 | Msa0797830:three_prime_UTR | 15.0% |
| !!! | TTTTTATTCAAAGAAGTTTA+AGG | + | chr5_3:10150240-10150259 | Msa0797830:CDS | 15.0% |
| !!! | ATAATATTCCATTAACATTT+TGG | - | chr5_3:10150431-10150450 | None:intergenic | 15.0% |
| !! | TAATGGAATATTATATTGAT+TGG | + | chr5_3:10150437-10150456 | Msa0797830:intron | 15.0% |
| !!! | CTAACTTTAATGTTTTAATT+TGG | + | chr5_3:10150462-10150481 | Msa0797830:intron | 15.0% |
| !!! | ATTTTATGAGTTTGTATAAA+TGG | + | chr5_3:10150635-10150654 | Msa0797830:three_prime_UTR | 15.0% |
| !! | TATATTGTTCTACATAAAAA+AGG | + | chr5_3:10150707-10150726 | Msa0797830:three_prime_UTR | 15.0% |
| !!! | GATTTTTTTTCTTTTTCAAG+AGG | - | chr5_3:10149521-10149540 | None:intergenic | 20.0% |
| !! | AACTTCTTTGAATAAAAAGT+TGG | - | chr5_3:10150238-10150257 | None:intergenic | 20.0% |
| !!! | TTTTTTCCTTTTTTGATTTG+AGG | + | chr5_3:10150683-10150702 | Msa0797830:three_prime_UTR | 20.0% |
| !! | ATATATCCTCAAATCAAAAA+AGG | - | chr5_3:10150692-10150711 | None:intergenic | 20.0% |
| !!! | GATTTTTTTTCTTTTTCAAG+AGG | - | chr5_3:10149521-10149540 | None:intergenic | 20.0% |
| !! | AACTTCTTTGAATAAAAAGT+TGG | - | chr5_3:10150238-10150257 | None:intergenic | 20.0% |
| !!! | TTTTTTCCTTTTTTGATTTG+AGG | + | chr5_3:10150683-10150702 | Msa0797830:three_prime_UTR | 20.0% |
| !! | ATATATCCTCAAATCAAAAA+AGG | - | chr5_3:10150692-10150711 | None:intergenic | 20.0% |
| !! | AATGATTTTACCTATCTCAT+TGG | + | chr5_3:10149571-10149590 | Msa0797830:CDS | 25.0% |
| !! | GTTCTTGCAATAATTTTATC+AGG | + | chr5_3:10149593-10149612 | Msa0797830:CDS | 25.0% |
| !! | TATTGTTGTAGAGGAAATTT+TGG | + | chr5_3:10150193-10150212 | Msa0797830:intron | 25.0% |
| !! | ATTGTTGTAGAGGAAATTTT+GGG | + | chr5_3:10150194-10150213 | Msa0797830:intron | 25.0% |
| ! | TTATTCAAAGAAGTTTAAGG+AGG | + | chr5_3:10150243-10150262 | Msa0797830:CDS | 25.0% |
| ! | TAAGCATAACTATAAGAAGT+TGG | - | chr5_3:10150274-10150293 | None:intergenic | 25.0% |
| !!! | TAAACGACACTGTTTTAAAA+CGG | + | chr5_3:10150378-10150397 | Msa0797830:intron | 25.0% |
| !!! | AATGTTTTAATTTGGACTTC+AGG | + | chr5_3:10150470-10150489 | Msa0797830:intron | 25.0% |
| ! | AGTTCACAGAGAAAATAAAA+CGG | - | chr5_3:10150663-10150682 | None:intergenic | 25.0% |
| !! | AATGATTTTACCTATCTCAT+TGG | + | chr5_3:10149571-10149590 | Msa0797830:CDS | 25.0% |
| !! | GTTCTTGCAATAATTTTATC+AGG | + | chr5_3:10149593-10149612 | Msa0797830:CDS | 25.0% |
| !! | TATTGTTGTAGAGGAAATTT+TGG | + | chr5_3:10150193-10150212 | Msa0797830:intron | 25.0% |
| !! | ATTGTTGTAGAGGAAATTTT+GGG | + | chr5_3:10150194-10150213 | Msa0797830:intron | 25.0% |
| ! | TTATTCAAAGAAGTTTAAGG+AGG | + | chr5_3:10150243-10150262 | Msa0797830:CDS | 25.0% |
| ! | TAAGCATAACTATAAGAAGT+TGG | - | chr5_3:10150274-10150293 | None:intergenic | 25.0% |
| !!! | TAAACGACACTGTTTTAAAA+CGG | + | chr5_3:10150378-10150397 | Msa0797830:intron | 25.0% |
| !!! | AATGTTTTAATTTGGACTTC+AGG | + | chr5_3:10150470-10150489 | Msa0797830:intron | 25.0% |
| ! | AGTTCACAGAGAAAATAAAA+CGG | - | chr5_3:10150663-10150682 | None:intergenic | 25.0% |
| TGCCAAAAAAATTGTTGATG+TGG | + | chr5_3:10149669-10149688 | Msa0797830:intron | 30.0% | |
| !!! | GTCCACATCAACAATTTTTT+TGG | - | chr5_3:10149674-10149693 | None:intergenic | 30.0% |
| AAAAAATTGTTGATGTGGAC+AGG | + | chr5_3:10149674-10149693 | Msa0797830:intron | 30.0% | |
| AAAAATTGTTGATGTGGACA+GGG | + | chr5_3:10149675-10149694 | Msa0797830:intron | 30.0% | |
| !! | TTTATCGGCTTAACAGAAAT+GGG | - | chr5_3:10150040-10150059 | None:intergenic | 30.0% |
| ATTTCTGTTAAGCCGATAAA+CGG | + | chr5_3:10150040-10150059 | Msa0797830:CDS | 30.0% | |
| ! | CAATTTCCTTTTCCGTTTAT+CGG | - | chr5_3:10150055-10150074 | None:intergenic | 30.0% |
| TGTCAAAGCCAAAATGTTAA+TGG | + | chr5_3:10150420-10150439 | Msa0797830:intron | 30.0% | |
| TACAATGAAGTTTGTGATCA+TGG | - | chr5_3:10150516-10150535 | None:intergenic | 30.0% | |
| TGCCAAAAAAATTGTTGATG+TGG | + | chr5_3:10149669-10149688 | Msa0797830:intron | 30.0% | |
| !!! | GTCCACATCAACAATTTTTT+TGG | - | chr5_3:10149674-10149693 | None:intergenic | 30.0% |
| AAAAAATTGTTGATGTGGAC+AGG | + | chr5_3:10149674-10149693 | Msa0797830:intron | 30.0% | |
| AAAAATTGTTGATGTGGACA+GGG | + | chr5_3:10149675-10149694 | Msa0797830:intron | 30.0% | |
| !! | TTTATCGGCTTAACAGAAAT+GGG | - | chr5_3:10150040-10150059 | None:intergenic | 30.0% |
| ATTTCTGTTAAGCCGATAAA+CGG | + | chr5_3:10150040-10150059 | Msa0797830:CDS | 30.0% | |
| ! | CAATTTCCTTTTCCGTTTAT+CGG | - | chr5_3:10150055-10150074 | None:intergenic | 30.0% |
| TGTCAAAGCCAAAATGTTAA+TGG | + | chr5_3:10150420-10150439 | Msa0797830:intron | 30.0% | |
| TACAATGAAGTTTGTGATCA+TGG | - | chr5_3:10150516-10150535 | None:intergenic | 30.0% | |
| TGTGACTGCTATGATTGATA+AGG | - | chr5_3:10149490-10149509 | None:intergenic | 35.0% | |
| AAAATCATAGCAGTCACACA+TGG | + | chr5_3:10149535-10149554 | Msa0797830:exon | 35.0% | |
| ATTGCAAGAACCAATGAGAT+AGG | - | chr5_3:10149584-10149603 | None:intergenic | 35.0% | |
| CACCATAGTAAACTATTGCA+AGG | + | chr5_3:10149727-10149746 | Msa0797830:CDS | 35.0% | |
| CTCCTTGCAATAGTTTACTA+TGG | - | chr5_3:10149732-10149751 | None:intergenic | 35.0% | |
| AACTTTGACCAAAATGGAGA+CGG | + | chr5_3:10149881-10149900 | Msa0797830:CDS | 35.0% | |
| !! | GTTTATCGGCTTAACAGAAA+TGG | - | chr5_3:10150041-10150060 | None:intergenic | 35.0% |
| !! | CTTTGGGACAAGTTAATCTT+AGG | - | chr5_3:10150102-10150121 | None:intergenic | 35.0% |
| GACTTAACGGAAAGTTCTTT+GGG | - | chr5_3:10150118-10150137 | None:intergenic | 35.0% | |
| AGACTTAACGGAAAGTTCTT+TGG | - | chr5_3:10150119-10150138 | None:intergenic | 35.0% | |
| GAACTTTCCGTTAAGTCTAA+CGG | + | chr5_3:10150121-10150140 | Msa0797830:CDS | 35.0% | |
| ! | ACTGATGAGTATTGTTGTAG+AGG | + | chr5_3:10150184-10150203 | Msa0797830:intron | 35.0% |
| ! | AAGTTGGTCTACAAGTAGAA+GGG | - | chr5_3:10150222-10150241 | None:intergenic | 35.0% |
| ! | AAAGTTGGTCTACAAGTAGA+AGG | - | chr5_3:10150223-10150242 | None:intergenic | 35.0% |
| GTGCATGTGAAAATACTTGT+TGG | - | chr5_3:10150304-10150323 | None:intergenic | 35.0% | |
| ! | ACAAGTATTTTCACATGCAC+CGG | + | chr5_3:10150304-10150323 | Msa0797830:intron | 35.0% |
| GATCACAAACTTCATTGTAG+TGG | + | chr5_3:10150517-10150536 | Msa0797830:CDS | 35.0% | |
| !! | TCAGCTCTTAGTTTGTGAAT+TGG | + | chr5_3:10150598-10150617 | Msa0797830:three_prime_UTR | 35.0% |
| TGTGACTGCTATGATTGATA+AGG | - | chr5_3:10149490-10149509 | None:intergenic | 35.0% | |
| AAAATCATAGCAGTCACACA+TGG | + | chr5_3:10149535-10149554 | Msa0797830:exon | 35.0% | |
| ATTGCAAGAACCAATGAGAT+AGG | - | chr5_3:10149584-10149603 | None:intergenic | 35.0% | |
| CACCATAGTAAACTATTGCA+AGG | + | chr5_3:10149727-10149746 | Msa0797830:CDS | 35.0% | |
| CTCCTTGCAATAGTTTACTA+TGG | - | chr5_3:10149732-10149751 | None:intergenic | 35.0% | |
| AACTTTGACCAAAATGGAGA+CGG | + | chr5_3:10149881-10149900 | Msa0797830:CDS | 35.0% | |
| !! | GTTTATCGGCTTAACAGAAA+TGG | - | chr5_3:10150041-10150060 | None:intergenic | 35.0% |
| !! | CTTTGGGACAAGTTAATCTT+AGG | - | chr5_3:10150102-10150121 | None:intergenic | 35.0% |
| GACTTAACGGAAAGTTCTTT+GGG | - | chr5_3:10150118-10150137 | None:intergenic | 35.0% | |
| AGACTTAACGGAAAGTTCTT+TGG | - | chr5_3:10150119-10150138 | None:intergenic | 35.0% | |
| GAACTTTCCGTTAAGTCTAA+CGG | + | chr5_3:10150121-10150140 | Msa0797830:CDS | 35.0% | |
| ! | ACTGATGAGTATTGTTGTAG+AGG | + | chr5_3:10150184-10150203 | Msa0797830:intron | 35.0% |
| ! | AAGTTGGTCTACAAGTAGAA+GGG | - | chr5_3:10150222-10150241 | None:intergenic | 35.0% |
| ! | AAAGTTGGTCTACAAGTAGA+AGG | - | chr5_3:10150223-10150242 | None:intergenic | 35.0% |
| GTGCATGTGAAAATACTTGT+TGG | - | chr5_3:10150304-10150323 | None:intergenic | 35.0% | |
| ! | ACAAGTATTTTCACATGCAC+CGG | + | chr5_3:10150304-10150323 | Msa0797830:intron | 35.0% |
| GATCACAAACTTCATTGTAG+TGG | + | chr5_3:10150517-10150536 | Msa0797830:CDS | 35.0% | |
| !! | TCAGCTCTTAGTTTGTGAAT+TGG | + | chr5_3:10150598-10150617 | Msa0797830:three_prime_UTR | 35.0% |
| ACTATTGCAAGGAGACTCTT+TGG | + | chr5_3:10149738-10149757 | Msa0797830:CDS | 40.0% | |
| TTTCCAGGGGAACATTTCAA+CGG | + | chr5_3:10149770-10149789 | Msa0797830:CDS | 40.0% | |
| !! | GCACCACTTTAAAATGTGGA+GGG | + | chr5_3:10149927-10149946 | Msa0797830:intron | 40.0% |
| !! | CACCACTTTAAAATGTGGAG+GGG | + | chr5_3:10149928-10149947 | Msa0797830:intron | 40.0% |
| AGGCTAACATCGTAGAAATC+GGG | - | chr5_3:10149998-10150017 | None:intergenic | 40.0% | |
| CAGGCTAACATCGTAGAAAT+CGG | - | chr5_3:10149999-10150018 | None:intergenic | 40.0% | |
| GTTAAGCCGATAAACGGAAA+AGG | + | chr5_3:10150046-10150065 | Msa0797830:CDS | 40.0% | |
| AAAGGAAATTGCTCAACTGC+TGG | + | chr5_3:10150064-10150083 | Msa0797830:CDS | 40.0% | |
| GGTCTTTCCGTTAGACTTAA+CGG | - | chr5_3:10150131-10150150 | None:intergenic | 40.0% | |
| ! | TATTTTCACATGCACCGGAA+CGG | + | chr5_3:10150309-10150328 | Msa0797830:intron | 40.0% |
| !!! | CGACACTGTTTTAAAACGGA+TGG | + | chr5_3:10150382-10150401 | Msa0797830:intron | 40.0% |
| !! | CTTCATTGTAGTGGATCACA+AGG | + | chr5_3:10150526-10150545 | Msa0797830:CDS | 40.0% |
| GTGTCAATGTCTCATGCATA+TGG | + | chr5_3:10150737-10150756 | Msa0797830:three_prime_UTR | 40.0% | |
| ACTATTGCAAGGAGACTCTT+TGG | + | chr5_3:10149738-10149757 | Msa0797830:CDS | 40.0% | |
| TTTCCAGGGGAACATTTCAA+CGG | + | chr5_3:10149770-10149789 | Msa0797830:CDS | 40.0% | |
| !! | GCACCACTTTAAAATGTGGA+GGG | + | chr5_3:10149927-10149946 | Msa0797830:intron | 40.0% |
| !! | CACCACTTTAAAATGTGGAG+GGG | + | chr5_3:10149928-10149947 | Msa0797830:intron | 40.0% |
| AGGCTAACATCGTAGAAATC+GGG | - | chr5_3:10149998-10150017 | None:intergenic | 40.0% | |
| CAGGCTAACATCGTAGAAAT+CGG | - | chr5_3:10149999-10150018 | None:intergenic | 40.0% | |
| GTTAAGCCGATAAACGGAAA+AGG | + | chr5_3:10150046-10150065 | Msa0797830:CDS | 40.0% | |
| AAAGGAAATTGCTCAACTGC+TGG | + | chr5_3:10150064-10150083 | Msa0797830:CDS | 40.0% | |
| GGTCTTTCCGTTAGACTTAA+CGG | - | chr5_3:10150131-10150150 | None:intergenic | 40.0% | |
| ! | TATTTTCACATGCACCGGAA+CGG | + | chr5_3:10150309-10150328 | Msa0797830:intron | 40.0% |
| !!! | CGACACTGTTTTAAAACGGA+TGG | + | chr5_3:10150382-10150401 | Msa0797830:intron | 40.0% |
| !! | CTTCATTGTAGTGGATCACA+AGG | + | chr5_3:10150526-10150545 | Msa0797830:CDS | 40.0% |
| GTGTCAATGTCTCATGCATA+TGG | + | chr5_3:10150737-10150756 | Msa0797830:three_prime_UTR | 40.0% | |
| GGAGGATTCGTCCTTAAACA+AGG | + | chr5_3:10149794-10149813 | Msa0797830:CDS | 45.0% | |
| ! | CGGAGGATTGTCCTTGTTTA+AGG | - | chr5_3:10149808-10149827 | None:intergenic | 45.0% |
| ! | TAAGTTGGAGTGGCCGAATT+TGG | + | chr5_3:10149843-10149862 | Msa0797830:CDS | 45.0% |
| AAGTTGGAGTGGCCGAATTT+GGG | + | chr5_3:10149844-10149863 | Msa0797830:CDS | 45.0% | |
| GGGTGCAACTTTGACCAAAA+TGG | + | chr5_3:10149875-10149894 | Msa0797830:CDS | 45.0% | |
| !! | TGCGGCACCACTTTAAAATG+TGG | + | chr5_3:10149923-10149942 | Msa0797830:intron | 45.0% |
| !! | GGCACCACTTTAAAATGTGG+AGG | + | chr5_3:10149926-10149945 | Msa0797830:intron | 45.0% |
| !! | TGCCCCTCCACATTTTAAAG+TGG | - | chr5_3:10149933-10149952 | None:intergenic | 45.0% |
| !! | ACTTTAAAATGTGGAGGGGC+AGG | + | chr5_3:10149932-10149951 | Msa0797830:intron | 45.0% |
| CGATTTCTACGATGTTAGCC+TGG | + | chr5_3:10149997-10150016 | Msa0797830:CDS | 45.0% | |
| AAGTCTAACGGAAAGACCGT+TGG | + | chr5_3:10150133-10150152 | Msa0797830:CDS | 45.0% | |
| AGTCTAACGGAAAGACCGTT+GGG | + | chr5_3:10150134-10150153 | Msa0797830:CDS | 45.0% | |
| !! | TTGTTGCCTTTTGTGCTGAC+AGG | + | chr5_3:10150338-10150357 | Msa0797830:intron | 45.0% |
| CACAAACCTGTCAGCACAAA+AGG | - | chr5_3:10150347-10150366 | None:intergenic | 45.0% | |
| !! | GTAGTGGATCACAAGGCTTA+AGG | + | chr5_3:10150533-10150552 | Msa0797830:CDS | 45.0% |
| CAAGGCTTAAGGTCGTTGAT+TGG | + | chr5_3:10150544-10150563 | Msa0797830:exon | 45.0% | |
| ! | TAAGGTCGTTGATTGGAAGC+TGG | + | chr5_3:10150551-10150570 | Msa0797830:exon | 45.0% |
| ! | CTGGTGGATAGCAATGATGA+TGG | + | chr5_3:10150570-10150589 | Msa0797830:three_prime_UTR | 45.0% |
| GGAGGATTCGTCCTTAAACA+AGG | + | chr5_3:10149794-10149813 | Msa0797830:CDS | 45.0% | |
| ! | CGGAGGATTGTCCTTGTTTA+AGG | - | chr5_3:10149808-10149827 | None:intergenic | 45.0% |
| ! | TAAGTTGGAGTGGCCGAATT+TGG | + | chr5_3:10149843-10149862 | Msa0797830:CDS | 45.0% |
| AAGTTGGAGTGGCCGAATTT+GGG | + | chr5_3:10149844-10149863 | Msa0797830:CDS | 45.0% | |
| GGGTGCAACTTTGACCAAAA+TGG | + | chr5_3:10149875-10149894 | Msa0797830:CDS | 45.0% | |
| !! | TGCGGCACCACTTTAAAATG+TGG | + | chr5_3:10149923-10149942 | Msa0797830:intron | 45.0% |
| !! | GGCACCACTTTAAAATGTGG+AGG | + | chr5_3:10149926-10149945 | Msa0797830:intron | 45.0% |
| !! | TGCCCCTCCACATTTTAAAG+TGG | - | chr5_3:10149933-10149952 | None:intergenic | 45.0% |
| !! | ACTTTAAAATGTGGAGGGGC+AGG | + | chr5_3:10149932-10149951 | Msa0797830:intron | 45.0% |
| CGATTTCTACGATGTTAGCC+TGG | + | chr5_3:10149997-10150016 | Msa0797830:CDS | 45.0% | |
| AAGTCTAACGGAAAGACCGT+TGG | + | chr5_3:10150133-10150152 | Msa0797830:CDS | 45.0% | |
| AGTCTAACGGAAAGACCGTT+GGG | + | chr5_3:10150134-10150153 | Msa0797830:CDS | 45.0% | |
| !! | TTGTTGCCTTTTGTGCTGAC+AGG | + | chr5_3:10150338-10150357 | Msa0797830:intron | 45.0% |
| CACAAACCTGTCAGCACAAA+AGG | - | chr5_3:10150347-10150366 | None:intergenic | 45.0% | |
| !! | GTAGTGGATCACAAGGCTTA+AGG | + | chr5_3:10150533-10150552 | Msa0797830:CDS | 45.0% |
| CAAGGCTTAAGGTCGTTGAT+TGG | + | chr5_3:10150544-10150563 | Msa0797830:exon | 45.0% | |
| ! | TAAGGTCGTTGATTGGAAGC+TGG | + | chr5_3:10150551-10150570 | Msa0797830:exon | 45.0% |
| ! | CTGGTGGATAGCAATGATGA+TGG | + | chr5_3:10150570-10150589 | Msa0797830:three_prime_UTR | 45.0% |
| TTTGGCCAGCTGTGTTTCCA+GGG | + | chr5_3:10149756-10149775 | Msa0797830:CDS | 50.0% | |
| ACTTACTGGAGCGGTGAACA+CGG | - | chr5_3:10149828-10149847 | None:intergenic | 50.0% | |
| TGTTCACCGCTCCAGTAAGT+TGG | + | chr5_3:10149828-10149847 | Msa0797830:CDS | 50.0% | |
| ATTCGGCCACTCCAACTTAC+TGG | - | chr5_3:10149842-10149861 | None:intergenic | 50.0% | |
| ACCCAGATCGAGCCCAAATT+CGG | - | chr5_3:10149859-10149878 | None:intergenic | 50.0% | |
| ! | GGCATTGTCCGTCTCCATTT+TGG | - | chr5_3:10149892-10149911 | None:intergenic | 50.0% |
| GTGAATTCAGCGAGTGATGC+TGG | - | chr5_3:10149965-10149984 | None:intergenic | 50.0% | |
| ! | TACGATGTTAGCCTGGTCGA+TGG | + | chr5_3:10150004-10150023 | Msa0797830:CDS | 50.0% |
| ACAAGCACTTCGACACCCAA+CGG | - | chr5_3:10150152-10150171 | None:intergenic | 50.0% | |
| GGCAACAACGTAATCCGTTC+CGG | - | chr5_3:10150326-10150345 | None:intergenic | 50.0% | |
| TTTGGCCAGCTGTGTTTCCA+GGG | + | chr5_3:10149756-10149775 | Msa0797830:CDS | 50.0% | |
| ACTTACTGGAGCGGTGAACA+CGG | - | chr5_3:10149828-10149847 | None:intergenic | 50.0% | |
| TGTTCACCGCTCCAGTAAGT+TGG | + | chr5_3:10149828-10149847 | Msa0797830:CDS | 50.0% | |
| ATTCGGCCACTCCAACTTAC+TGG | - | chr5_3:10149842-10149861 | None:intergenic | 50.0% | |
| ACCCAGATCGAGCCCAAATT+CGG | - | chr5_3:10149859-10149878 | None:intergenic | 50.0% | |
| ! | GGCATTGTCCGTCTCCATTT+TGG | - | chr5_3:10149892-10149911 | None:intergenic | 50.0% |
| GTGAATTCAGCGAGTGATGC+TGG | - | chr5_3:10149965-10149984 | None:intergenic | 50.0% | |
| ! | TACGATGTTAGCCTGGTCGA+TGG | + | chr5_3:10150004-10150023 | Msa0797830:CDS | 50.0% |
| ACAAGCACTTCGACACCCAA+CGG | - | chr5_3:10150152-10150171 | None:intergenic | 50.0% | |
| GGCAACAACGTAATCCGTTC+CGG | - | chr5_3:10150326-10150345 | None:intergenic | 50.0% | |
| CTTTGGCCAGCTGTGTTTCC+AGG | + | chr5_3:10149755-10149774 | Msa0797830:CDS | 55.0% | |
| TTGGCCAGCTGTGTTTCCAG+GGG | + | chr5_3:10149757-10149776 | Msa0797830:CDS | 55.0% | |
| TGTTCCCCTGGAAACACAGC+TGG | - | chr5_3:10149764-10149783 | None:intergenic | 55.0% | |
| CCAGGGGAACATTTCAACGG+CGG | + | chr5_3:10149773-10149792 | Msa0797830:CDS | 55.0% | |
| ! | ACCGCTCCAGTAAGTTGGAG+TGG | + | chr5_3:10149833-10149852 | Msa0797830:CDS | 55.0% |
| GCCACTCCAACTTACTGGAG+CGG | - | chr5_3:10149837-10149856 | None:intergenic | 55.0% | |
| GCCGAATTTGGGCTCGATCT+GGG | + | chr5_3:10149855-10149874 | Msa0797830:CDS | 55.0% | |
| GGAGACGGACAATGCCAAAC+CGG | + | chr5_3:10149896-10149915 | Msa0797830:CDS | 55.0% | |
| CAATGCCAAACCGGTGCATG+CGG | + | chr5_3:10149905-10149924 | Msa0797830:intron | 55.0% | |
| !! | TAAAGTGGTGCCGCATGCAC+CGG | - | chr5_3:10149918-10149937 | None:intergenic | 55.0% |
| GCACATTGAAGCCATCGACC+AGG | - | chr5_3:10150018-10150037 | None:intergenic | 55.0% | |
| ! | GGTCGTTGATTGGAAGCTGG+TGG | + | chr5_3:10150554-10150573 | Msa0797830:three_prime_UTR | 55.0% |
| CTTTGGCCAGCTGTGTTTCC+AGG | + | chr5_3:10149755-10149774 | Msa0797830:CDS | 55.0% | |
| TTGGCCAGCTGTGTTTCCAG+GGG | + | chr5_3:10149757-10149776 | Msa0797830:CDS | 55.0% | |
| TGTTCCCCTGGAAACACAGC+TGG | - | chr5_3:10149764-10149783 | None:intergenic | 55.0% | |
| CCAGGGGAACATTTCAACGG+CGG | + | chr5_3:10149773-10149792 | Msa0797830:CDS | 55.0% | |
| ! | ACCGCTCCAGTAAGTTGGAG+TGG | + | chr5_3:10149833-10149852 | Msa0797830:CDS | 55.0% |
| GCCACTCCAACTTACTGGAG+CGG | - | chr5_3:10149837-10149856 | None:intergenic | 55.0% | |
| GCCGAATTTGGGCTCGATCT+GGG | + | chr5_3:10149855-10149874 | Msa0797830:CDS | 55.0% | |
| GGAGACGGACAATGCCAAAC+CGG | + | chr5_3:10149896-10149915 | Msa0797830:CDS | 55.0% | |
| CAATGCCAAACCGGTGCATG+CGG | + | chr5_3:10149905-10149924 | Msa0797830:intron | 55.0% | |
| !! | TAAAGTGGTGCCGCATGCAC+CGG | - | chr5_3:10149918-10149937 | None:intergenic | 55.0% |
| GCACATTGAAGCCATCGACC+AGG | - | chr5_3:10150018-10150037 | None:intergenic | 55.0% | |
| ! | GGTCGTTGATTGGAAGCTGG+TGG | + | chr5_3:10150554-10150573 | Msa0797830:three_prime_UTR | 55.0% |
| CCGCCGTTGAAATGTTCCCC+TGG | - | chr5_3:10149776-10149795 | None:intergenic | 60.0% | |
| GGGGAACATTTCAACGGCGG+AGG | + | chr5_3:10149776-10149795 | Msa0797830:CDS | 60.0% | |
| TACTGGAGCGGTGAACACGG+AGG | - | chr5_3:10149825-10149844 | None:intergenic | 60.0% | |
| GGCCGAATTTGGGCTCGATC+TGG | + | chr5_3:10149854-10149873 | Msa0797830:CDS | 60.0% | |
| CCGCCGTTGAAATGTTCCCC+TGG | - | chr5_3:10149776-10149795 | None:intergenic | 60.0% | |
| GGGGAACATTTCAACGGCGG+AGG | + | chr5_3:10149776-10149795 | Msa0797830:CDS | 60.0% | |
| TACTGGAGCGGTGAACACGG+AGG | - | chr5_3:10149825-10149844 | None:intergenic | 60.0% | |
| GGCCGAATTTGGGCTCGATC+TGG | + | chr5_3:10149854-10149873 | Msa0797830:CDS | 60.0% | |
| !! | TGGTGCCGCATGCACCGGTT+TGG | - | chr5_3:10149913-10149932 | None:intergenic | 65.0% |
| !! | TGGTGCCGCATGCACCGGTT+TGG | - | chr5_3:10149913-10149932 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 10149475 | 10150816 | 10149475 | ID=Msa0797830;Name=Msa0797830 |
| chr5_3 | mRNA | 10149475 | 10150816 | 10149475 | ID=Msa0797830-mRNA-1;Parent=Msa0797830;Name=Msa0797830-mRNA-1;_AED=0.12;_eAED=0.12;_QI=79|0.25|0.4|1|0.25|0.4|5|263|228 |
| chr5_3 | exon | 10149475 | 10149614 | 10149475 | ID=Msa0797830-mRNA-1:exon:4308;Parent=Msa0797830-mRNA-1 |
| chr5_3 | exon | 10149696 | 10149917 | 10149696 | ID=Msa0797830-mRNA-1:exon:4309;Parent=Msa0797830-mRNA-1 |
| chr5_3 | exon | 10149954 | 10150191 | 10149954 | ID=Msa0797830-mRNA-1:exon:4310;Parent=Msa0797830-mRNA-1 |
| chr5_3 | exon | 10150204 | 10150307 | 10150204 | ID=Msa0797830-mRNA-1:exon:4311;Parent=Msa0797830-mRNA-1 |
| chr5_3 | exon | 10150492 | 10150816 | 10150492 | ID=Msa0797830-mRNA-1:exon:4312;Parent=Msa0797830-mRNA-1 |
| chr5_3 | five_prime_UTR | 10149475 | 10149553 | 10149475 | ID=Msa0797830-mRNA-1:five_prime_utr;Parent=Msa0797830-mRNA-1 |
| chr5_3 | CDS | 10149554 | 10149614 | 10149554 | ID=Msa0797830-mRNA-1:cds;Parent=Msa0797830-mRNA-1 |
| chr5_3 | CDS | 10149696 | 10149917 | 10149696 | ID=Msa0797830-mRNA-1:cds;Parent=Msa0797830-mRNA-1 |
| chr5_3 | CDS | 10149954 | 10150191 | 10149954 | ID=Msa0797830-mRNA-1:cds;Parent=Msa0797830-mRNA-1 |
| chr5_3 | CDS | 10150204 | 10150307 | 10150204 | ID=Msa0797830-mRNA-1:cds;Parent=Msa0797830-mRNA-1 |
| chr5_3 | CDS | 10150492 | 10150553 | 10150492 | ID=Msa0797830-mRNA-1:cds;Parent=Msa0797830-mRNA-1 |
| chr5_3 | three_prime_UTR | 10150554 | 10150816 | 10150554 | ID=Msa0797830-mRNA-1:three_prime_utr;Parent=Msa0797830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
