Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649840 | XP_003607678.2 | 97.748 | 222 | 3 | 2 | 1 | 220 | 1 | 222 | 3.55e-155 | 439 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649840 | sp|Q9SK27|ENL1_ARATH | 47.899 | 119 | 61 | 1 | 18 | 135 | 17 | 135 | 4.14e-34 | 123 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649840 | G7JF09 | 97.748 | 222 | 3 | 2 | 1 | 220 | 1 | 222 | 1.69e-155 | 439 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009780 | Msa0649840 | 0.826060 | 3.336831e-54 | -8.615850e-47 |
| Msa0015150 | Msa0649840 | 0.857501 | 1.563741e-62 | -8.615850e-47 |
| Msa0029960 | Msa0649840 | 0.805070 | 1.594005e-49 | -8.615850e-47 |
| Msa0064120 | Msa0649840 | 0.874573 | 6.076888e-68 | -8.615850e-47 |
| Msa0108880 | Msa0649840 | 0.851839 | 6.832237e-61 | -8.615850e-47 |
| Msa0609300 | Msa0649840 | 0.814303 | 1.650076e-51 | -8.615850e-47 |
| Msa0649840 | Msa0691910 | 0.818663 | 1.742516e-52 | -8.615850e-47 |
| Msa0649840 | Msa0797830 | 0.812374 | 4.378627e-51 | -8.615850e-47 |
| Msa0649840 | Msa1014320 | 0.858983 | 5.663836e-63 | -8.615850e-47 |
| Msa0649840 | Msa1055310 | 0.861212 | 1.202165e-63 | -8.615850e-47 |
| Msa0649840 | Msa1188170 | 0.878379 | 2.945291e-69 | -8.615850e-47 |
| Msa0649840 | Msa1404480 | 0.810542 | 1.094494e-50 | -8.615850e-47 |
| Msa0649840 | Msa1429860 | 0.821962 | 3.054001e-53 | -8.615850e-47 |
| Msa0649840 | Msa1435630 | 0.817962 | 2.511337e-52 | -8.615850e-47 |
| Msa0155180 | Msa0649840 | 0.857942 | 1.157399e-62 | -8.615850e-47 |
| Msa0182400 | Msa0649840 | 0.802866 | 4.578367e-49 | -8.615850e-47 |
| Msa0205570 | Msa0649840 | 0.807163 | 5.781759e-50 | -8.615850e-47 |
| Msa0205670 | Msa0649840 | 0.829759 | 4.301460e-55 | -8.615850e-47 |
| Msa0382530 | Msa0649840 | 0.816866 | 4.434787e-52 | -8.615850e-47 |
| Msa0418970 | Msa0649840 | 0.846920 | 1.603437e-59 | -8.615850e-47 |
| Msa0424490 | Msa0649840 | 0.809990 | 1.439705e-50 | -8.615850e-47 |
| Msa0432320 | Msa0649840 | 0.814798 | 1.282136e-51 | -8.615850e-47 |
| Msa0460550 | Msa0649840 | 0.844127 | 9.162257e-59 | -8.615850e-47 |
| Msa0460630 | Msa0649840 | 0.808191 | 3.495796e-50 | -8.615850e-47 |
| Msa0471460 | Msa0649840 | 0.811315 | 7.444288e-51 | -8.615850e-47 |
| Msa0471540 | Msa0649840 | 0.808998 | 2.351189e-50 | -8.615850e-47 |
| Msa0525210 | Msa0649840 | 0.815755 | 7.857427e-52 | -8.615850e-47 |
| Msa0562620 | Msa0649840 | 0.810779 | 9.727395e-51 | -8.615850e-47 |
| Msa0579780 | Msa0649840 | 0.976408 | 9.082530e-142 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649840 | MtrunA17_Chr4g0041811 | 97.748 | 222 | 3 | 2 | 1 | 220 | 1 | 222 | 3.26e-159 | 439 |
| Msa0649840 | MtrunA17_Chr2g0319611 | 50.410 | 244 | 72 | 7 | 24 | 218 | 18 | 261 | 1.02e-65 | 203 |
| Msa0649840 | MtrunA17_Chr2g0324721 | 42.188 | 192 | 95 | 4 | 29 | 220 | 24 | 199 | 3.57e-41 | 139 |
| Msa0649840 | MtrunA17_Chr8g0360371 | 44.444 | 126 | 68 | 1 | 15 | 140 | 7 | 130 | 1.53e-36 | 130 |
| Msa0649840 | MtrunA17_Chr2g0317231 | 48.780 | 123 | 55 | 3 | 18 | 135 | 7 | 126 | 1.12e-34 | 130 |
| Msa0649840 | MtrunA17_Chr2g0324711 | 49.123 | 114 | 56 | 1 | 20 | 133 | 13 | 124 | 1.42e-33 | 123 |
| Msa0649840 | MtrunA17_Chr1g0150131 | 41.549 | 142 | 69 | 3 | 28 | 168 | 21 | 149 | 1.55e-33 | 119 |
| Msa0649840 | MtrunA17_Chr3g0136871 | 41.135 | 141 | 82 | 1 | 29 | 168 | 24 | 164 | 4.54e-33 | 117 |
| Msa0649840 | MtrunA17_Chr4g0040291 | 45.333 | 150 | 70 | 4 | 29 | 170 | 22 | 167 | 2.45e-31 | 113 |
| Msa0649840 | MtrunA17_Chr8g0385021 | 43.443 | 122 | 68 | 1 | 20 | 141 | 12 | 132 | 7.15e-28 | 106 |
| Msa0649840 | MtrunA17_Chr2g0331181 | 36.047 | 172 | 85 | 5 | 1 | 171 | 1 | 148 | 2.00e-27 | 103 |
| Msa0649840 | MtrunA17_Chr8g0385031 | 44.643 | 112 | 61 | 1 | 20 | 131 | 12 | 122 | 1.71e-26 | 103 |
| Msa0649840 | MtrunA17_Chr8g0385041 | 44.037 | 109 | 58 | 2 | 30 | 138 | 23 | 128 | 6.72e-25 | 99.8 |
| Msa0649840 | MtrunA17_Chr4g0039721 | 35.099 | 151 | 82 | 4 | 18 | 154 | 14 | 162 | 1.12e-22 | 90.9 |
| Msa0649840 | MtrunA17_Chr7g0256441 | 36.957 | 138 | 64 | 3 | 29 | 165 | 24 | 139 | 1.30e-22 | 89.7 |
| Msa0649840 | MtrunA17_Chr6g0458331 | 43.478 | 115 | 62 | 2 | 28 | 141 | 33 | 145 | 1.68e-22 | 89.7 |
| Msa0649840 | MtrunA17_Chr4g0062341 | 31.818 | 154 | 94 | 4 | 18 | 163 | 12 | 162 | 2.71e-22 | 89.7 |
| Msa0649840 | MtrunA17_Chr4g0062311 | 31.818 | 154 | 94 | 4 | 18 | 163 | 12 | 162 | 2.71e-22 | 89.7 |
| Msa0649840 | MtrunA17_Chr3g0127521 | 28.846 | 208 | 108 | 6 | 18 | 187 | 4 | 209 | 6.45e-20 | 85.9 |
| Msa0649840 | MtrunA17_Chr5g0394321 | 32.432 | 148 | 96 | 2 | 18 | 165 | 12 | 155 | 5.03e-19 | 81.3 |
| Msa0649840 | MtrunA17_Chr1g0205701 | 32.468 | 154 | 98 | 2 | 20 | 169 | 13 | 164 | 8.59e-19 | 80.5 |
| Msa0649840 | MtrunA17_Chr1g0188981 | 34.579 | 107 | 69 | 1 | 26 | 131 | 23 | 129 | 1.64e-18 | 80.1 |
| Msa0649840 | MtrunA17_Chr4g0073901 | 34.783 | 115 | 74 | 1 | 18 | 131 | 15 | 129 | 1.90e-18 | 79.7 |
| Msa0649840 | MtrunA17_Chr3g0132431 | 39.516 | 124 | 68 | 3 | 8 | 131 | 4 | 120 | 9.48e-18 | 77.8 |
| Msa0649840 | MtrunA17_Chr4g0073921 | 32.759 | 116 | 77 | 1 | 18 | 132 | 15 | 130 | 2.37e-17 | 78.6 |
| Msa0649840 | MtrunA17_Chr3g0132441 | 41.837 | 98 | 52 | 2 | 34 | 131 | 28 | 120 | 1.31e-16 | 74.7 |
| Msa0649840 | MtrunA17_Chr7g0253631 | 33.058 | 121 | 75 | 2 | 11 | 129 | 3 | 119 | 2.53e-16 | 75.1 |
| Msa0649840 | MtrunA17_Chr7g0253761 | 30.000 | 160 | 102 | 3 | 11 | 164 | 3 | 158 | 5.03e-16 | 73.2 |
| Msa0649840 | MtrunA17_Chr3g0132511 | 36.697 | 109 | 65 | 1 | 14 | 122 | 8 | 112 | 8.19e-16 | 73.6 |
| Msa0649840 | MtrunA17_Chr7g0253681 | 32.308 | 130 | 83 | 2 | 6 | 134 | 1 | 126 | 2.24e-15 | 70.9 |
| Msa0649840 | MtrunA17_Chr8g0335531 | 31.220 | 205 | 108 | 7 | 16 | 216 | 8 | 183 | 2.47e-15 | 71.2 |
| Msa0649840 | MtrunA17_Chr3g0132701 | 36.697 | 109 | 65 | 1 | 14 | 122 | 8 | 112 | 4.02e-15 | 71.6 |
| Msa0649840 | MtrunA17_Chr2g0323021 | 31.250 | 144 | 80 | 4 | 22 | 164 | 15 | 140 | 4.11e-15 | 71.6 |
| Msa0649840 | MtrunA17_Chr6g0483981 | 28.249 | 177 | 103 | 4 | 23 | 193 | 18 | 176 | 4.67e-15 | 73.6 |
| Msa0649840 | MtrunA17_Chr1g0196801 | 27.273 | 176 | 104 | 4 | 28 | 203 | 19 | 170 | 1.10e-14 | 69.3 |
| Msa0649840 | MtrunA17_Chr7g0253701 | 31.538 | 130 | 83 | 3 | 6 | 134 | 1 | 125 | 1.95e-14 | 68.6 |
| Msa0649840 | MtrunA17_Chr7g0253671 | 31.538 | 130 | 83 | 3 | 6 | 134 | 1 | 125 | 1.95e-14 | 68.6 |
| Msa0649840 | MtrunA17_Chr7g0253641 | 31.624 | 117 | 74 | 2 | 18 | 132 | 10 | 122 | 2.64e-14 | 69.3 |
| Msa0649840 | MtrunA17_Chr2g0289741 | 30.435 | 138 | 85 | 3 | 33 | 169 | 28 | 155 | 3.53e-14 | 67.8 |
| Msa0649840 | MtrunA17_Chr4g0064041 | 30.645 | 124 | 86 | 0 | 9 | 132 | 6 | 129 | 5.24e-14 | 70.1 |
| Msa0649840 | MtrunA17_Chr4g0064041 | 29.670 | 182 | 121 | 1 | 32 | 213 | 191 | 365 | 9.98e-14 | 69.3 |
| Msa0649840 | MtrunA17_Chr1g0177341 | 34.234 | 111 | 69 | 2 | 20 | 130 | 13 | 119 | 5.54e-14 | 67.0 |
| Msa0649840 | MtrunA17_Chr1g0177331 | 34.234 | 111 | 69 | 2 | 20 | 130 | 13 | 119 | 5.54e-14 | 67.0 |
| Msa0649840 | MtrunA17_Chr6g0453921 | 29.487 | 156 | 87 | 4 | 11 | 164 | 17 | 151 | 1.35e-13 | 66.6 |
| Msa0649840 | MtrunA17_Chr3g0132411 | 32.479 | 117 | 71 | 3 | 18 | 131 | 48 | 159 | 2.05e-13 | 65.9 |
| Msa0649840 | MtrunA17_Chr4g0033131 | 29.091 | 110 | 74 | 2 | 23 | 129 | 19 | 127 | 1.12e-12 | 63.9 |
| Msa0649840 | MtrunA17_Chr4g0033531 | 29.091 | 110 | 74 | 2 | 23 | 129 | 19 | 127 | 1.12e-12 | 63.9 |
| Msa0649840 | MtrunA17_Chr1g0211101 | 30.539 | 167 | 100 | 5 | 2 | 167 | 10 | 161 | 1.63e-12 | 63.5 |
| Msa0649840 | MtrunA17_Chr6g0459441 | 34.694 | 98 | 60 | 1 | 34 | 131 | 28 | 121 | 4.51e-12 | 62.4 |
| Msa0649840 | MtrunA17_Chr8g0335571 | 28.571 | 203 | 128 | 5 | 16 | 216 | 8 | 195 | 5.02e-12 | 62.8 |
| Msa0649840 | MtrunA17_Chr8g0379081 | 30.282 | 142 | 79 | 3 | 79 | 220 | 2 | 123 | 5.95e-12 | 60.8 |
| Msa0649840 | MtrunA17_Chr2g0306461 | 32.110 | 109 | 72 | 2 | 23 | 131 | 19 | 125 | 9.13e-12 | 62.0 |
| Msa0649840 | MtrunA17_Chr7g0253731 | 31.034 | 116 | 75 | 3 | 20 | 134 | 13 | 124 | 1.18e-11 | 60.8 |
| Msa0649840 | MtrunA17_Chr6g0453801 | 26.380 | 163 | 90 | 4 | 20 | 180 | 23 | 157 | 1.25e-11 | 61.2 |
| Msa0649840 | MtrunA17_Chr8g0387804 | 28.829 | 111 | 78 | 1 | 21 | 131 | 18 | 127 | 1.67e-11 | 59.7 |
| Msa0649840 | MtrunA17_Chr6g0481491 | 30.841 | 107 | 69 | 2 | 34 | 140 | 30 | 131 | 2.27e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0649840 | AT3G20570.1 | 46.316 | 190 | 92 | 2 | 11 | 200 | 9 | 188 | 3.19e-52 | 167 |
| Msa0649840 | AT4G28365.1 | 39.655 | 174 | 85 | 4 | 11 | 179 | 3 | 161 | 4.18e-35 | 124 |
| Msa0649840 | AT2G25060.1 | 47.899 | 119 | 61 | 1 | 18 | 135 | 17 | 135 | 4.21e-35 | 123 |
| Msa0649840 | AT4G30590.1 | 46.774 | 124 | 65 | 1 | 32 | 154 | 28 | 151 | 5.91e-34 | 120 |
| Msa0649840 | AT4G31840.1 | 37.654 | 162 | 81 | 3 | 17 | 176 | 11 | 154 | 3.52e-33 | 118 |
| Msa0649840 | AT5G25090.1 | 41.860 | 129 | 74 | 1 | 8 | 135 | 2 | 130 | 2.18e-32 | 116 |
| Msa0649840 | AT2G23990.1 | 39.011 | 182 | 97 | 2 | 35 | 215 | 31 | 199 | 4.77e-29 | 108 |
| Msa0649840 | AT5G57920.1 | 40.741 | 108 | 63 | 1 | 27 | 133 | 18 | 125 | 1.05e-28 | 106 |
| Msa0649840 | AT4G32490.1 | 36.842 | 171 | 96 | 4 | 18 | 179 | 12 | 179 | 1.71e-28 | 107 |
| Msa0649840 | AT5G53870.2 | 38.690 | 168 | 96 | 4 | 29 | 191 | 27 | 192 | 1.99e-28 | 110 |
| Msa0649840 | AT5G57920.3 | 40.741 | 108 | 63 | 1 | 27 | 133 | 50 | 157 | 2.95e-28 | 106 |
| Msa0649840 | AT5G53870.1 | 38.690 | 168 | 96 | 4 | 29 | 191 | 27 | 192 | 3.07e-28 | 109 |
| Msa0649840 | AT5G57920.2 | 41.346 | 104 | 60 | 1 | 31 | 133 | 21 | 124 | 3.89e-28 | 105 |
| Msa0649840 | AT4G27520.1 | 40.310 | 129 | 70 | 2 | 12 | 135 | 6 | 132 | 3.01e-26 | 104 |
| Msa0649840 | AT2G23990.2 | 35.323 | 201 | 97 | 3 | 35 | 215 | 31 | 218 | 1.36e-24 | 97.4 |
| Msa0649840 | AT1G48940.1 | 38.843 | 121 | 70 | 2 | 15 | 133 | 9 | 127 | 6.30e-22 | 89.0 |
| Msa0649840 | AT3G18590.1 | 37.984 | 129 | 76 | 2 | 6 | 132 | 1 | 127 | 1.65e-21 | 88.2 |
| Msa0649840 | AT5G14345.1 | 35.971 | 139 | 73 | 5 | 17 | 153 | 4 | 128 | 3.87e-19 | 80.9 |
| Msa0649840 | AT1G64640.1 | 30.405 | 148 | 91 | 2 | 24 | 171 | 25 | 160 | 5.06e-18 | 79.0 |
| Msa0649840 | AT1G79800.1 | 34.167 | 120 | 72 | 3 | 18 | 132 | 16 | 133 | 5.44e-18 | 79.0 |
| Msa0649840 | AT5G26330.1 | 32.787 | 122 | 78 | 2 | 11 | 132 | 5 | 122 | 1.88e-17 | 77.4 |
| Msa0649840 | AT3G17675.1 | 30.894 | 123 | 81 | 1 | 7 | 129 | 7 | 125 | 3.12e-15 | 70.1 |
| Msa0649840 | AT4G01380.1 | 37.143 | 105 | 63 | 3 | 29 | 131 | 69 | 172 | 3.89e-15 | 71.6 |
| Msa0649840 | AT2G32300.1 | 30.714 | 140 | 88 | 3 | 23 | 159 | 17 | 150 | 1.33e-14 | 71.2 |
| Msa0649840 | AT2G32300.2 | 29.747 | 158 | 101 | 4 | 5 | 159 | 30 | 180 | 1.41e-14 | 71.2 |
| Msa0649840 | AT5G07475.1 | 32.110 | 109 | 69 | 2 | 21 | 129 | 19 | 122 | 2.10e-14 | 69.3 |
| Msa0649840 | AT1G72230.1 | 33.094 | 139 | 81 | 4 | 40 | 178 | 31 | 157 | 4.61e-14 | 68.2 |
| Msa0649840 | AT3G27200.1 | 33.636 | 110 | 67 | 3 | 21 | 129 | 15 | 119 | 7.13e-13 | 64.7 |
| Msa0649840 | AT2G31050.1 | 34.343 | 99 | 62 | 1 | 34 | 132 | 31 | 126 | 2.07e-12 | 63.9 |
| Msa0649840 | AT5G20230.1 | 27.820 | 133 | 81 | 3 | 31 | 158 | 24 | 146 | 2.46e-12 | 63.9 |
| Msa0649840 | AT2G26720.1 | 32.323 | 99 | 64 | 1 | 34 | 132 | 31 | 126 | 2.26e-11 | 61.2 |
| Msa0649840 | AT1G45063.2 | 34.343 | 99 | 62 | 3 | 34 | 131 | 151 | 247 | 3.50e-11 | 61.6 |
| Msa0649840 | AT1G45063.1 | 34.343 | 99 | 62 | 3 | 34 | 131 | 151 | 247 | 4.23e-11 | 62.0 |
Find 63 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGCTCTGTTGGAACTTTCA+TGG | 0.283920 | 4_3:-56581657 | Msa0649840:CDS |
| GGTGGTGTTTGGTTTGTGTC+TGG | 0.308705 | 4_3:+56581749 | None:intergenic |
| TTCTGTATGAACTGAGTCTT+TGG | 0.318585 | 4_3:-56581540 | Msa0649840:three_prime_UTR |
| TTGGAACACTCCAACCCTTT+TGG | 0.324439 | 4_3:+56582265 | None:intergenic |
| GATTGACCCTCTTGGTTAGA+AGG | 0.329977 | 4_3:+56581779 | None:intergenic |
| GTGGAGTAGCATTGCTTGTT+TGG | 0.340017 | 4_3:+56581834 | None:intergenic |
| GTCTTTAAACTCAACCAATC+AGG | 0.360809 | 4_3:-56581962 | Msa0649840:CDS |
| CTGAGTCTTTGGTTCAAAGT+TGG | 0.379014 | 4_3:-56581529 | Msa0649840:three_prime_UTR |
| TGAGTCTTTGGTTCAAAGTT+GGG | 0.379693 | 4_3:-56581528 | Msa0649840:three_prime_UTR |
| TAGCCGTAGGAGGTGGTGTT+TGG | 0.395961 | 4_3:+56581738 | None:intergenic |
| GTCAGTCTAGCTGGCTCTGT+TGG | 0.406609 | 4_3:-56581668 | Msa0649840:CDS |
| CCATTGATTAAAAGGATTGT+TGG | 0.406941 | 4_3:+56582236 | None:intergenic |
| GTTTGGTTTGTGTCTGGAGG+TGG | 0.410354 | 4_3:+56581755 | None:intergenic |
| GGAAAGAATTGAGGCATCAT+TGG | 0.416799 | 4_3:+56582456 | None:intergenic |
| TCATACAGAACTCAAAATAT+AGG | 0.425370 | 4_3:+56581553 | None:intergenic |
| CTCGAGCACTCATAGATACT+TGG | 0.425737 | 4_3:+56581616 | None:intergenic |
| GCACAGAGTCTTTGCCAGAT+TGG | 0.426430 | 4_3:+56582059 | None:intergenic |
| TCAAACTTTGTCAGTCTAGC+TGG | 0.426595 | 4_3:-56581677 | Msa0649840:CDS |
| TTTATTAGACCTTAAAATGA+AGG | 0.439171 | 4_3:+56582365 | None:intergenic |
| TTGTTATCCTCAAATTTCAA+TGG | 0.441135 | 4_3:-56582391 | Msa0649840:exon |
| TTCATAGTTGGTGGCCAAAA+GGG | 0.444814 | 4_3:-56582279 | Msa0649840:CDS |
| GCTGCATATGATTTCATAGT+TGG | 0.446593 | 4_3:-56582291 | Msa0649840:CDS |
| AGTAGCATTGCTTGTTTGGT+TGG | 0.452665 | 4_3:+56581838 | None:intergenic |
| TTTCATAGTTGGTGGCCAAA+AGG | 0.455909 | 4_3:-56582280 | Msa0649840:CDS |
| CCCTCTTGGTTAGAAGGAGC+TGG | 0.474880 | 4_3:+56581785 | None:intergenic |
| AAAGGATTGTTGGAATCACT+TGG | 0.491885 | 4_3:+56582246 | None:intergenic |
| GGTGTTTGGTTTGTGTCTGG+AGG | 0.499463 | 4_3:+56581752 | None:intergenic |
| CATGATCATCCTCCTCGTAA+TGG | 0.504200 | 4_3:-56581707 | Msa0649840:CDS |
| AATTAGTCCATGCCTTGAGC+TGG | 0.511550 | 4_3:-56582344 | Msa0649840:CDS |
| GCAGTGTTCAACTACCAATC+TGG | 0.514865 | 4_3:-56582073 | Msa0649840:intron |
| GGGAGTCCCCAACTTGAAAA+CGG | 0.517540 | 4_3:+56582202 | None:intergenic |
| GATTATGCAAGTTGCAACAC+TGG | 0.519894 | 4_3:-56582019 | Msa0649840:CDS |
| TTTCAAGTTGGGGACTCCCT+AGG | 0.521154 | 4_3:-56582198 | Msa0649840:intron |
| GGAGGTGATGATTGTGGTGA+TGG | 0.527680 | 4_3:+56581812 | None:intergenic |
| AAACCAAACACCACCTCCTA+CGG | 0.530029 | 4_3:-56581741 | Msa0649840:CDS |
| TGAAGAAATGAGGCCCTGAT+TGG | 0.537089 | 4_3:+56581948 | None:intergenic |
| TTAGAAGGAGCTGGTGAAGG+AGG | 0.538728 | 4_3:+56581794 | None:intergenic |
| TTTCCACTGATGAAGAAATG+AGG | 0.541876 | 4_3:+56581938 | None:intergenic |
| AAGGTAGCCATTGAAATTTG+AGG | 0.546027 | 4_3:+56582384 | None:intergenic |
| GGTGATGATTGTGGTGATGG+TGG | 0.547221 | 4_3:+56581815 | None:intergenic |
| TTGTAATAGCTTCCTTTCCA+CGG | 0.554842 | 4_3:-56582504 | Msa0649840:five_prime_UTR |
| CCTGTTGCAAAATTCTCTGA+TGG | 0.555562 | 4_3:-56581992 | Msa0649840:CDS |
| GGGCCTCATTTCTTCATCAG+TGG | 0.556626 | 4_3:-56581941 | Msa0649840:CDS |
| TCTTTAAACTCAACCAATCA+GGG | 0.557095 | 4_3:-56581961 | Msa0649840:CDS |
| TAGTTGGTGGCCAAAAGGGT+TGG | 0.561994 | 4_3:-56582275 | Msa0649840:CDS |
| GAGGTGGAGATTGACCCTCT+TGG | 0.574489 | 4_3:+56581771 | None:intergenic |
| TGGTTAGAAGGAGCTGGTGA+AGG | 0.577859 | 4_3:+56581791 | None:intergenic |
| GACAAAACCAGCTCAAGGCA+TGG | 0.579660 | 4_3:+56582337 | None:intergenic |
| GCATATGATTTCATAGTTGG+TGG | 0.580632 | 4_3:-56582288 | Msa0649840:CDS |
| TAGAGTGGTGGAAAGAATTG+AGG | 0.594421 | 4_3:+56582447 | None:intergenic |
| TCACTAGTAGCCGTAGGAGG+TGG | 0.599144 | 4_3:+56581731 | None:intergenic |
| AAATTGTGCAAACCGTGGAA+AGG | 0.606922 | 4_3:+56582492 | None:intergenic |
| GGTGAAGGAGGTGATGATTG+TGG | 0.620622 | 4_3:+56581806 | None:intergenic |
| CATGAGACAAAACCAGCTCA+AGG | 0.630389 | 4_3:+56582332 | None:intergenic |
| TATTGAAATTGTGCAAACCG+TGG | 0.637396 | 4_3:+56582487 | None:intergenic |
| AAATGTTAAAGCTAGAGTGG+TGG | 0.638618 | 4_3:+56582435 | None:intergenic |
| ACCAGCTCCTTCTAACCAAG+AGG | 0.640263 | 4_3:-56581786 | Msa0649840:CDS |
| TGATCACTAGTAGCCGTAGG+AGG | 0.647674 | 4_3:+56581728 | None:intergenic |
| TTTGAAGCAGCACCATTACG+AGG | 0.663713 | 4_3:+56581695 | None:intergenic |
| CCAGCTCCTTCTAACCAAGA+GGG | 0.664992 | 4_3:-56581785 | Msa0649840:CDS |
| TGGAAATGTTAAAGCTAGAG+TGG | 0.673089 | 4_3:+56582432 | None:intergenic |
| TCATGATCACTAGTAGCCGT+AGG | 0.676192 | 4_3:+56581725 | None:intergenic |
| GAAGCAGCACCATTACGAGG+AGG | 0.705603 | 4_3:+56581698 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATATCACATTAAATTTT+TGG | - | chr4_3:56581741-56581760 | Msa0649840:CDS | 10.0% |
| !!! | TTTATATCACATTAAATTTT+TGG | - | chr4_3:56581741-56581760 | Msa0649840:CDS | 10.0% |
| !! | TTTATTAGACCTTAAAATGA+AGG | + | chr4_3:56581529-56581548 | None:intergenic | 20.0% |
| !!! | GAATTAAACCCATTTTTTTA+CGG | - | chr4_3:56582499-56582518 | Msa0649840:five_prime_UTR | 20.0% |
| !! | TTTATTAGACCTTAAAATGA+AGG | + | chr4_3:56581529-56581548 | None:intergenic | 20.0% |
| !!! | GAATTAAACCCATTTTTTTA+CGG | - | chr4_3:56582499-56582518 | Msa0649840:five_prime_UTR | 20.0% |
| ! | AAATCAATTGAGAAAAATGC+TGG | + | chr4_3:56581482-56581501 | None:intergenic | 25.0% |
| ! | TTGTTATCCTCAAATTTCAA+TGG | - | chr4_3:56581500-56581519 | Msa0649840:three_prime_UTR | 25.0% |
| !! | CAACAATCCTTTTAATCAAT+GGG | - | chr4_3:56581656-56581675 | Msa0649840:CDS | 25.0% |
| ! | ATTAAAGAAGAACTTACCTA+GGG | + | chr4_3:56581712-56581731 | None:intergenic | 25.0% |
| ! | TCATACAGAACTCAAAATAT+AGG | + | chr4_3:56582341-56582360 | None:intergenic | 25.0% |
| ! | GTGAAGATTGAAAAATAAGT+TGG | - | chr4_3:56582406-56582425 | Msa0649840:five_prime_UTR | 25.0% |
| ! | AAATCAATTGAGAAAAATGC+TGG | + | chr4_3:56581482-56581501 | None:intergenic | 25.0% |
| ! | TTGTTATCCTCAAATTTCAA+TGG | - | chr4_3:56581500-56581519 | Msa0649840:three_prime_UTR | 25.0% |
| !! | CAACAATCCTTTTAATCAAT+GGG | - | chr4_3:56581656-56581675 | Msa0649840:CDS | 25.0% |
| ! | ATTAAAGAAGAACTTACCTA+GGG | + | chr4_3:56581712-56581731 | None:intergenic | 25.0% |
| ! | TCATACAGAACTCAAAATAT+AGG | + | chr4_3:56582341-56582360 | None:intergenic | 25.0% |
| ! | GTGAAGATTGAAAAATAAGT+TGG | - | chr4_3:56582406-56582425 | Msa0649840:five_prime_UTR | 25.0% |
| ! | CCATTGATTAAAAGGATTGT+TGG | + | chr4_3:56581658-56581677 | None:intergenic | 30.0% |
| ! | CCAACAATCCTTTTAATCAA+TGG | - | chr4_3:56581655-56581674 | Msa0649840:CDS | 30.0% |
| !! | TTTTCTGCCCATTGATTAAA+AGG | + | chr4_3:56581666-56581685 | None:intergenic | 30.0% |
| GATTAAAGAAGAACTTACCT+AGG | + | chr4_3:56581713-56581732 | None:intergenic | 30.0% | |
| TCTTTAAACTCAACCAATCA+GGG | - | chr4_3:56581930-56581949 | Msa0649840:CDS | 30.0% | |
| ! | CCATTGATTAAAAGGATTGT+TGG | + | chr4_3:56581658-56581677 | None:intergenic | 30.0% |
| ! | CCAACAATCCTTTTAATCAA+TGG | - | chr4_3:56581655-56581674 | Msa0649840:CDS | 30.0% |
| !! | TTTTCTGCCCATTGATTAAA+AGG | + | chr4_3:56581666-56581685 | None:intergenic | 30.0% |
| GATTAAAGAAGAACTTACCT+AGG | + | chr4_3:56581713-56581732 | None:intergenic | 30.0% | |
| TCTTTAAACTCAACCAATCA+GGG | - | chr4_3:56581930-56581949 | Msa0649840:CDS | 30.0% | |
| TTGTAATAGCTTCCTTTCCA+CGG | - | chr4_3:56581387-56581406 | Msa0649840:three_prime_UTR | 35.0% | |
| TATTGAAATTGTGCAAACCG+TGG | + | chr4_3:56581407-56581426 | None:intergenic | 35.0% | |
| AAATGTTAAAGCTAGAGTGG+TGG | + | chr4_3:56581459-56581478 | None:intergenic | 35.0% | |
| TGGAAATGTTAAAGCTAGAG+TGG | + | chr4_3:56581462-56581481 | None:intergenic | 35.0% | |
| AAGGTAGCCATTGAAATTTG+AGG | + | chr4_3:56581510-56581529 | None:intergenic | 35.0% | |
| ! | CAATGGCTACCTTCATTTTA+AGG | - | chr4_3:56581517-56581536 | Msa0649840:three_prime_UTR | 35.0% |
| GCTGCATATGATTTCATAGT+TGG | - | chr4_3:56581600-56581619 | Msa0649840:three_prime_UTR | 35.0% | |
| GCATATGATTTCATAGTTGG+TGG | - | chr4_3:56581603-56581622 | Msa0649840:three_prime_UTR | 35.0% | |
| AAAGGATTGTTGGAATCACT+TGG | + | chr4_3:56581648-56581667 | None:intergenic | 35.0% | |
| !!! | AAAAGAGCCGTTTTCAAGTT+GGG | - | chr4_3:56581682-56581701 | Msa0649840:CDS | 35.0% |
| GTCTTTAAACTCAACCAATC+AGG | - | chr4_3:56581929-56581948 | Msa0649840:CDS | 35.0% | |
| TTTCCACTGATGAAGAAATG+AGG | + | chr4_3:56581956-56581975 | None:intergenic | 35.0% | |
| CAACTGTCTCAAAAATGAGA+AGG | - | chr4_3:56581982-56582001 | Msa0649840:CDS | 35.0% | |
| TTCTGTATGAACTGAGTCTT+TGG | - | chr4_3:56582351-56582370 | Msa0649840:CDS | 35.0% | |
| ! | TGAGTCTTTGGTTCAAAGTT+GGG | - | chr4_3:56582363-56582382 | Msa0649840:CDS | 35.0% |
| TTGTAATAGCTTCCTTTCCA+CGG | - | chr4_3:56581387-56581406 | Msa0649840:three_prime_UTR | 35.0% | |
| TATTGAAATTGTGCAAACCG+TGG | + | chr4_3:56581407-56581426 | None:intergenic | 35.0% | |
| AAATGTTAAAGCTAGAGTGG+TGG | + | chr4_3:56581459-56581478 | None:intergenic | 35.0% | |
| TGGAAATGTTAAAGCTAGAG+TGG | + | chr4_3:56581462-56581481 | None:intergenic | 35.0% | |
| AAGGTAGCCATTGAAATTTG+AGG | + | chr4_3:56581510-56581529 | None:intergenic | 35.0% | |
| ! | CAATGGCTACCTTCATTTTA+AGG | - | chr4_3:56581517-56581536 | Msa0649840:three_prime_UTR | 35.0% |
| GCTGCATATGATTTCATAGT+TGG | - | chr4_3:56581600-56581619 | Msa0649840:three_prime_UTR | 35.0% | |
| GCATATGATTTCATAGTTGG+TGG | - | chr4_3:56581603-56581622 | Msa0649840:three_prime_UTR | 35.0% | |
| AAAGGATTGTTGGAATCACT+TGG | + | chr4_3:56581648-56581667 | None:intergenic | 35.0% | |
| !!! | AAAAGAGCCGTTTTCAAGTT+GGG | - | chr4_3:56581682-56581701 | Msa0649840:CDS | 35.0% |
| GTCTTTAAACTCAACCAATC+AGG | - | chr4_3:56581929-56581948 | Msa0649840:CDS | 35.0% | |
| TTTCCACTGATGAAGAAATG+AGG | + | chr4_3:56581956-56581975 | None:intergenic | 35.0% | |
| CAACTGTCTCAAAAATGAGA+AGG | - | chr4_3:56581982-56582001 | Msa0649840:CDS | 35.0% | |
| TTCTGTATGAACTGAGTCTT+TGG | - | chr4_3:56582351-56582370 | Msa0649840:CDS | 35.0% | |
| ! | TGAGTCTTTGGTTCAAAGTT+GGG | - | chr4_3:56582363-56582382 | Msa0649840:CDS | 35.0% |
| AAATTGTGCAAACCGTGGAA+AGG | + | chr4_3:56581402-56581421 | None:intergenic | 40.0% | |
| ! | GGAAAGAATTGAGGCATCAT+TGG | + | chr4_3:56581438-56581457 | None:intergenic | 40.0% |
| ! | TAGAGTGGTGGAAAGAATTG+AGG | + | chr4_3:56581447-56581466 | None:intergenic | 40.0% |
| !! | TTTCATAGTTGGTGGCCAAA+AGG | - | chr4_3:56581611-56581630 | Msa0649840:exon | 40.0% |
| !! | TTCATAGTTGGTGGCCAAAA+GGG | - | chr4_3:56581612-56581631 | Msa0649840:exon | 40.0% |
| !!! | GAAAAGAGCCGTTTTCAAGT+TGG | - | chr4_3:56581681-56581700 | Msa0649840:CDS | 40.0% |
| !!! | AAAGAGCCGTTTTCAAGTTG+GGG | - | chr4_3:56581683-56581702 | Msa0649840:CDS | 40.0% |
| GATTATGCAAGTTGCAACAC+TGG | - | chr4_3:56581872-56581891 | Msa0649840:CDS | 40.0% | |
| ! | CCATCAGAGAATTTTGCAAC+AGG | + | chr4_3:56581902-56581921 | None:intergenic | 40.0% |
| CCTGTTGCAAAATTCTCTGA+TGG | - | chr4_3:56581899-56581918 | Msa0649840:CDS | 40.0% | |
| AGTAGCATTGCTTGTTTGGT+TGG | + | chr4_3:56582056-56582075 | None:intergenic | 40.0% | |
| TCAAACTTTGTCAGTCTAGC+TGG | - | chr4_3:56582214-56582233 | Msa0649840:CDS | 40.0% | |
| ! | CTGAGTCTTTGGTTCAAAGT+TGG | - | chr4_3:56582362-56582381 | Msa0649840:CDS | 40.0% |
| AAATTGTGCAAACCGTGGAA+AGG | + | chr4_3:56581402-56581421 | None:intergenic | 40.0% | |
| ! | GGAAAGAATTGAGGCATCAT+TGG | + | chr4_3:56581438-56581457 | None:intergenic | 40.0% |
| ! | TAGAGTGGTGGAAAGAATTG+AGG | + | chr4_3:56581447-56581466 | None:intergenic | 40.0% |
| !! | TTTCATAGTTGGTGGCCAAA+AGG | - | chr4_3:56581611-56581630 | Msa0649840:exon | 40.0% |
| !! | TTCATAGTTGGTGGCCAAAA+GGG | - | chr4_3:56581612-56581631 | Msa0649840:exon | 40.0% |
| !!! | GAAAAGAGCCGTTTTCAAGT+TGG | - | chr4_3:56581681-56581700 | Msa0649840:CDS | 40.0% |
| !!! | AAAGAGCCGTTTTCAAGTTG+GGG | - | chr4_3:56581683-56581702 | Msa0649840:CDS | 40.0% |
| GATTATGCAAGTTGCAACAC+TGG | - | chr4_3:56581872-56581891 | Msa0649840:CDS | 40.0% | |
| ! | CCATCAGAGAATTTTGCAAC+AGG | + | chr4_3:56581902-56581921 | None:intergenic | 40.0% |
| CCTGTTGCAAAATTCTCTGA+TGG | - | chr4_3:56581899-56581918 | Msa0649840:CDS | 40.0% | |
| AGTAGCATTGCTTGTTTGGT+TGG | + | chr4_3:56582056-56582075 | None:intergenic | 40.0% | |
| TCAAACTTTGTCAGTCTAGC+TGG | - | chr4_3:56582214-56582233 | Msa0649840:CDS | 40.0% | |
| ! | CTGAGTCTTTGGTTCAAAGT+TGG | - | chr4_3:56582362-56582381 | Msa0649840:CDS | 40.0% |
| AATTAGTCCATGCCTTGAGC+TGG | - | chr4_3:56581547-56581566 | Msa0649840:three_prime_UTR | 45.0% | |
| CATGAGACAAAACCAGCTCA+AGG | + | chr4_3:56581562-56581581 | None:intergenic | 45.0% | |
| ! | TTGGAACACTCCAACCCTTT+TGG | + | chr4_3:56581629-56581648 | None:intergenic | 45.0% |
| GCAGTGTTCAACTACCAATC+TGG | - | chr4_3:56581818-56581837 | Msa0649840:CDS | 45.0% | |
| TGAAGAAATGAGGCCCTGAT+TGG | + | chr4_3:56581946-56581965 | None:intergenic | 45.0% | |
| GTGGAGTAGCATTGCTTGTT+TGG | + | chr4_3:56582060-56582079 | None:intergenic | 45.0% | |
| GATTGACCCTCTTGGTTAGA+AGG | + | chr4_3:56582115-56582134 | None:intergenic | 45.0% | |
| AAACCAAACACCACCTCCTA+CGG | - | chr4_3:56582150-56582169 | Msa0649840:intron | 45.0% | |
| TCATGATCACTAGTAGCCGT+AGG | + | chr4_3:56582169-56582188 | None:intergenic | 45.0% | |
| CATGATCATCCTCCTCGTAA+TGG | - | chr4_3:56582184-56582203 | Msa0649840:intron | 45.0% | |
| ! | TTTGAAGCAGCACCATTACG+AGG | + | chr4_3:56582199-56582218 | None:intergenic | 45.0% |
| ! | TGGCTCTGTTGGAACTTTCA+TGG | - | chr4_3:56582234-56582253 | Msa0649840:CDS | 45.0% |
| CTCGAGCACTCATAGATACT+TGG | + | chr4_3:56582278-56582297 | None:intergenic | 45.0% | |
| AATTAGTCCATGCCTTGAGC+TGG | - | chr4_3:56581547-56581566 | Msa0649840:three_prime_UTR | 45.0% | |
| CATGAGACAAAACCAGCTCA+AGG | + | chr4_3:56581562-56581581 | None:intergenic | 45.0% | |
| ! | TTGGAACACTCCAACCCTTT+TGG | + | chr4_3:56581629-56581648 | None:intergenic | 45.0% |
| GCAGTGTTCAACTACCAATC+TGG | - | chr4_3:56581818-56581837 | Msa0649840:CDS | 45.0% | |
| TGAAGAAATGAGGCCCTGAT+TGG | + | chr4_3:56581946-56581965 | None:intergenic | 45.0% | |
| GTGGAGTAGCATTGCTTGTT+TGG | + | chr4_3:56582060-56582079 | None:intergenic | 45.0% | |
| GATTGACCCTCTTGGTTAGA+AGG | + | chr4_3:56582115-56582134 | None:intergenic | 45.0% | |
| AAACCAAACACCACCTCCTA+CGG | - | chr4_3:56582150-56582169 | Msa0649840:intron | 45.0% | |
| TCATGATCACTAGTAGCCGT+AGG | + | chr4_3:56582169-56582188 | None:intergenic | 45.0% | |
| CATGATCATCCTCCTCGTAA+TGG | - | chr4_3:56582184-56582203 | Msa0649840:intron | 45.0% | |
| ! | TTTGAAGCAGCACCATTACG+AGG | + | chr4_3:56582199-56582218 | None:intergenic | 45.0% |
| ! | TGGCTCTGTTGGAACTTTCA+TGG | - | chr4_3:56582234-56582253 | Msa0649840:CDS | 45.0% |
| CTCGAGCACTCATAGATACT+TGG | + | chr4_3:56582278-56582297 | None:intergenic | 45.0% | |
| GACAAAACCAGCTCAAGGCA+TGG | + | chr4_3:56581557-56581576 | None:intergenic | 50.0% | |
| !! | TAGTTGGTGGCCAAAAGGGT+TGG | - | chr4_3:56581616-56581635 | Msa0649840:exon | 50.0% |
| GGGAGTCCCCAACTTGAAAA+CGG | + | chr4_3:56581692-56581711 | None:intergenic | 50.0% | |
| !! | TTTCAAGTTGGGGACTCCCT+AGG | - | chr4_3:56581693-56581712 | Msa0649840:CDS | 50.0% |
| GCACAGAGTCTTTGCCAGAT+TGG | + | chr4_3:56581835-56581854 | None:intergenic | 50.0% | |
| GGGCCTCATTTCTTCATCAG+TGG | - | chr4_3:56581950-56581969 | Msa0649840:CDS | 50.0% | |
| !! | GGTGATGATTGTGGTGATGG+TGG | + | chr4_3:56582079-56582098 | None:intergenic | 50.0% |
| GGAGGTGATGATTGTGGTGA+TGG | + | chr4_3:56582082-56582101 | None:intergenic | 50.0% | |
| GGTGAAGGAGGTGATGATTG+TGG | + | chr4_3:56582088-56582107 | None:intergenic | 50.0% | |
| TTAGAAGGAGCTGGTGAAGG+AGG | + | chr4_3:56582100-56582119 | None:intergenic | 50.0% | |
| TGGTTAGAAGGAGCTGGTGA+AGG | + | chr4_3:56582103-56582122 | None:intergenic | 50.0% | |
| ACCAGCTCCTTCTAACCAAG+AGG | - | chr4_3:56582105-56582124 | Msa0649840:intron | 50.0% | |
| CCAGCTCCTTCTAACCAAGA+GGG | - | chr4_3:56582106-56582125 | Msa0649840:intron | 50.0% | |
| !! | GTTTGGTTTGTGTCTGGAGG+TGG | + | chr4_3:56582139-56582158 | None:intergenic | 50.0% |
| !! | GGTGTTTGGTTTGTGTCTGG+AGG | + | chr4_3:56582142-56582161 | None:intergenic | 50.0% |
| !! | GGTGGTGTTTGGTTTGTGTC+TGG | + | chr4_3:56582145-56582164 | None:intergenic | 50.0% |
| TGATCACTAGTAGCCGTAGG+AGG | + | chr4_3:56582166-56582185 | None:intergenic | 50.0% | |
| GACAAAACCAGCTCAAGGCA+TGG | + | chr4_3:56581557-56581576 | None:intergenic | 50.0% | |
| !! | TAGTTGGTGGCCAAAAGGGT+TGG | - | chr4_3:56581616-56581635 | Msa0649840:exon | 50.0% |
| GGGAGTCCCCAACTTGAAAA+CGG | + | chr4_3:56581692-56581711 | None:intergenic | 50.0% | |
| !! | TTTCAAGTTGGGGACTCCCT+AGG | - | chr4_3:56581693-56581712 | Msa0649840:CDS | 50.0% |
| GCACAGAGTCTTTGCCAGAT+TGG | + | chr4_3:56581835-56581854 | None:intergenic | 50.0% | |
| GGGCCTCATTTCTTCATCAG+TGG | - | chr4_3:56581950-56581969 | Msa0649840:CDS | 50.0% | |
| !! | GGTGATGATTGTGGTGATGG+TGG | + | chr4_3:56582079-56582098 | None:intergenic | 50.0% |
| GGAGGTGATGATTGTGGTGA+TGG | + | chr4_3:56582082-56582101 | None:intergenic | 50.0% | |
| GGTGAAGGAGGTGATGATTG+TGG | + | chr4_3:56582088-56582107 | None:intergenic | 50.0% | |
| TTAGAAGGAGCTGGTGAAGG+AGG | + | chr4_3:56582100-56582119 | None:intergenic | 50.0% | |
| TGGTTAGAAGGAGCTGGTGA+AGG | + | chr4_3:56582103-56582122 | None:intergenic | 50.0% | |
| ACCAGCTCCTTCTAACCAAG+AGG | - | chr4_3:56582105-56582124 | Msa0649840:intron | 50.0% | |
| CCAGCTCCTTCTAACCAAGA+GGG | - | chr4_3:56582106-56582125 | Msa0649840:intron | 50.0% | |
| !! | GTTTGGTTTGTGTCTGGAGG+TGG | + | chr4_3:56582139-56582158 | None:intergenic | 50.0% |
| !! | GGTGTTTGGTTTGTGTCTGG+AGG | + | chr4_3:56582142-56582161 | None:intergenic | 50.0% |
| !! | GGTGGTGTTTGGTTTGTGTC+TGG | + | chr4_3:56582145-56582164 | None:intergenic | 50.0% |
| TGATCACTAGTAGCCGTAGG+AGG | + | chr4_3:56582166-56582185 | None:intergenic | 50.0% | |
| CCCTCTTGGTTAGAAGGAGC+TGG | + | chr4_3:56582109-56582128 | None:intergenic | 55.0% | |
| GAGGTGGAGATTGACCCTCT+TGG | + | chr4_3:56582123-56582142 | None:intergenic | 55.0% | |
| TAGCCGTAGGAGGTGGTGTT+TGG | + | chr4_3:56582156-56582175 | None:intergenic | 55.0% | |
| TCACTAGTAGCCGTAGGAGG+TGG | + | chr4_3:56582163-56582182 | None:intergenic | 55.0% | |
| GAAGCAGCACCATTACGAGG+AGG | + | chr4_3:56582196-56582215 | None:intergenic | 55.0% | |
| !! | GTCAGTCTAGCTGGCTCTGT+TGG | - | chr4_3:56582223-56582242 | Msa0649840:CDS | 55.0% |
| CCCTCTTGGTTAGAAGGAGC+TGG | + | chr4_3:56582109-56582128 | None:intergenic | 55.0% | |
| GAGGTGGAGATTGACCCTCT+TGG | + | chr4_3:56582123-56582142 | None:intergenic | 55.0% | |
| TAGCCGTAGGAGGTGGTGTT+TGG | + | chr4_3:56582156-56582175 | None:intergenic | 55.0% | |
| TCACTAGTAGCCGTAGGAGG+TGG | + | chr4_3:56582163-56582182 | None:intergenic | 55.0% | |
| GAAGCAGCACCATTACGAGG+AGG | + | chr4_3:56582196-56582215 | None:intergenic | 55.0% | |
| !! | GTCAGTCTAGCTGGCTCTGT+TGG | - | chr4_3:56582223-56582242 | Msa0649840:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 56581386 | 56582527 | 56581386 | ID=Msa0649840;Name=Msa0649840 |
| chr4_3 | mRNA | 56581386 | 56582527 | 56581386 | ID=Msa0649840-mRNA-1;Parent=Msa0649840;Name=Msa0649840-mRNA-1;_AED=0.00;_eAED=0.00;_QI=133|1|1|1|1|1|2|239|220 |
| chr4_3 | exon | 56581386 | 56582091 | 56581386 | ID=Msa0649840-mRNA-1:exon:14720;Parent=Msa0649840-mRNA-1 |
| chr4_3 | exon | 56582199 | 56582527 | 56582199 | ID=Msa0649840-mRNA-1:exon:14719;Parent=Msa0649840-mRNA-1 |
| chr4_3 | five_prime_UTR | 56582395 | 56582527 | 56582395 | ID=Msa0649840-mRNA-1:five_prime_utr;Parent=Msa0649840-mRNA-1 |
| chr4_3 | CDS | 56582199 | 56582394 | 56582199 | ID=Msa0649840-mRNA-1:cds;Parent=Msa0649840-mRNA-1 |
| chr4_3 | CDS | 56581625 | 56582091 | 56581625 | ID=Msa0649840-mRNA-1:cds;Parent=Msa0649840-mRNA-1 |
| chr4_3 | three_prime_UTR | 56581386 | 56581624 | 56581386 | ID=Msa0649840-mRNA-1:three_prime_utr;Parent=Msa0649840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
