Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0797870 | XP_039690839.1 | 98.033 | 305 | 6 | 0 | 1 | 305 | 26 | 330 | 0.0 | 617 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0797870 | sp|Q54II8|QSPP_DICDI | 41.824 | 318 | 166 | 6 | 4 | 305 | 7 | 321 | 6.75e-78 | 243 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0797870 | G7K3V0 | 98.033 | 305 | 6 | 0 | 1 | 305 | 1 | 305 | 0.0 | 616 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0756250 | Msa0797870 | 0.916167 | 2.465391e-85 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0797870 | MtrunA17_Chr5g0401381 | 98.033 | 305 | 6 | 0 | 1 | 305 | 1 | 305 | 0.0 | 616 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 80 sgRNAs with CRISPR-Local
Find 283 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATTTGAATTATGATAATT+TGG | 0.163853 | 5_3:+10215022 | Msa0797870:CDS |
| AGATATTTGCAGCAGATTTA+TGG | 0.178599 | 5_3:+10216134 | Msa0797870:CDS |
| CAGATTTATGGGGTGCATTT+CGG | 0.186692 | 5_3:+10216146 | Msa0797870:CDS |
| AGATTTATGGGGTGCATTTC+GGG | 0.205280 | 5_3:+10216147 | Msa0797870:CDS |
| CATGTCGTTGTTGACCCTTC+AGG | 0.247834 | 5_3:+10212768 | Msa0797870:CDS |
| TGTTCAGTACTTGTTTGTTT+TGG | 0.290429 | 5_3:+10212967 | Msa0797870:CDS |
| GATCTTTGGCTTTGGGCAAC+TGG | 0.297869 | 5_3:+10216871 | Msa0797870:CDS |
| AATTATGATAATTTGGCATC+TGG | 0.302437 | 5_3:+10215029 | Msa0797870:CDS |
| TCAGTGTGGAGCTGGATCTT+TGG | 0.305183 | 5_3:+10216857 | Msa0797870:CDS |
| TGGAGCTGGATCTTTGGCTT+TGG | 0.309645 | 5_3:+10216863 | Msa0797870:CDS |
| GGAGCTGGATCTTTGGCTTT+GGG | 0.318143 | 5_3:+10216864 | Msa0797870:CDS |
| AAAGGTGATACCTTAGCTTT+TGG | 0.318612 | 5_3:+10217147 | Msa0797870:three_prime_UTR |
| GATATTTGCAGCAGATTTAT+GGG | 0.335872 | 5_3:+10216135 | Msa0797870:CDS |
| AACAATGTAGTCTGCCATTA+TGG | 0.338975 | 5_3:-10216209 | None:intergenic |
| ATTATTAAGCATATGATATA+TGG | 0.344993 | 5_3:+10216938 | Msa0797870:exon |
| CCAAGCTGCTGAAGCACAGC+TGG | 0.390431 | 5_3:-10216232 | None:intergenic |
| TTGCTAGGTTGGAATTGAAC+TGG | 0.395328 | 5_3:+10215864 | Msa0797870:intron |
| CCAGCTGTGCTTCAGCAGCT+TGG | 0.419904 | 5_3:+10216232 | Msa0797870:CDS |
| GACCGTCTGCAAAAGTATAC+TGG | 0.421036 | 5_3:+10215095 | Msa0797870:CDS |
| TGGGGTGCATTTCGGGGCCA+TGG | 0.425075 | 5_3:+10216154 | Msa0797870:CDS |
| ATTCTATTCCGAAGGTTGAA+TGG | 0.431021 | 5_3:+10212903 | Msa0797870:CDS |
| TTGGCCTAGACCCCTTCCTT+TGG | 0.431477 | 5_3:+10215679 | Msa0797870:CDS |
| TCAGGTGCTCAGTGTGGAGC+TGG | 0.433731 | 5_3:+10216849 | Msa0797870:intron |
| TCAAAATCCCATTCAACCTT+CGG | 0.437178 | 5_3:-10212911 | None:intergenic |
| TCTTCCAAAGGAAGGGGTCT+AGG | 0.445497 | 5_3:-10215683 | None:intergenic |
| AATAATATATTGAAAGTGTT+CGG | 0.447093 | 5_3:-10216921 | None:intergenic |
| GCATTTCGGGGCCATGGATA+CGG | 0.449371 | 5_3:+10216160 | Msa0797870:CDS |
| GCCAGTGGAGAAATATGTCC+AGG | 0.449860 | 5_3:+10216295 | Msa0797870:CDS |
| CATCAGCTCTCTGACCATAA+TGG | 0.451433 | 5_3:+10216195 | Msa0797870:CDS |
| CTTTGGAAGATGAACGCGTT+AGG | 0.454985 | 5_3:+10215696 | Msa0797870:CDS |
| AAGGTGAATGACTGTACCTT+TGG | 0.455818 | 5_3:+10217033 | Msa0797870:three_prime_UTR |
| TTCTATTCCGAAGGTTGAAT+GGG | 0.459281 | 5_3:+10212904 | Msa0797870:CDS |
| ATTATGATAATTTGGCATCT+GGG | 0.462458 | 5_3:+10215030 | Msa0797870:CDS |
| GACGGCCTTTGTACACTGAA+TGG | 0.473528 | 5_3:-10216087 | None:intergenic |
| TAAGGTAACTATCTAAGAAA+AGG | 0.484127 | 5_3:+10217014 | Msa0797870:three_prime_UTR |
| CGCGTTCATCTTCCAAAGGA+AGG | 0.485272 | 5_3:-10215691 | None:intergenic |
| CCCTGGACATATTTCTCCAC+TGG | 0.492184 | 5_3:-10216296 | None:intergenic |
| ACGTTCGAGCTACCTCTGCT+TGG | 0.492230 | 5_3:+10212727 | Msa0797870:CDS |
| TCAACTTCCTCCTCAGTCCC+TGG | 0.495373 | 5_3:-10216313 | None:intergenic |
| CACCATTGATTCTATTCCGA+AGG | 0.499858 | 5_3:+10212895 | Msa0797870:CDS |
| AACCTTCGGAATAGAATCAA+TGG | 0.502139 | 5_3:-10212897 | None:intergenic |
| GAGCTGATAAGCGTAAAATC+AGG | 0.504065 | 5_3:+10216376 | Msa0797870:CDS |
| TCCACTGGCCTCAATAGTAC+TGG | 0.513718 | 5_3:-10216281 | None:intergenic |
| TAATTTGGCATCTGGGCTAA+AGG | 0.516976 | 5_3:+10215037 | Msa0797870:CDS |
| TACATGCTGTGGAGAAAATG+AGG | 0.519155 | 5_3:+10216353 | Msa0797870:CDS |
| TTCAAAAGCTCACGAAGTTG+TGG | 0.524231 | 5_3:-10215656 | None:intergenic |
| CGTTCGAGCTACCTCTGCTT+GGG | 0.529517 | 5_3:+10212728 | Msa0797870:CDS |
| CTTTAAACTCGCCGTATCCA+TGG | 0.531080 | 5_3:-10216171 | None:intergenic |
| GTTCATTCATCACATTGAAA+CGG | 0.531381 | 5_3:+10212674 | Msa0797870:five_prime_UTR |
| GCGTTCATCTTCCAAAGGAA+GGG | 0.542409 | 5_3:-10215690 | None:intergenic |
| AGGAAAATGACGTGCAACAA+GGG | 0.556066 | 5_3:-10215956 | None:intergenic |
| TCAATAGTACTGGCAAGTGT+TGG | 0.562581 | 5_3:-10216271 | None:intergenic |
| GTCATTTCAGGTGCTCAGTG+TGG | 0.563843 | 5_3:+10216843 | Msa0797870:intron |
| GCAGCATTGTGAAAACTCAA+TGG | 0.565465 | 5_3:+10212701 | Msa0797870:exon |
| TTGAACTGAACCAAAAGCTA+AGG | 0.575521 | 5_3:-10217157 | None:intergenic |
| CGTTCATCTTCCAAAGGAAG+GGG | 0.577505 | 5_3:-10215689 | None:intergenic |
| AGGTTGGAATTGAACTGGAA+AGG | 0.582837 | 5_3:+10215869 | Msa0797870:intron |
| AACACTTGCCAGTACTATTG+AGG | 0.585591 | 5_3:+10216273 | Msa0797870:CDS |
| ACGCGTTAGGTTACTTCATG+AGG | 0.590346 | 5_3:+10215709 | Msa0797870:CDS |
| CAGGAAAATGACGTGCAACA+AGG | 0.591199 | 5_3:-10215957 | None:intergenic |
| AACAAGTACTGAACAGTGAG+TGG | 0.598592 | 5_3:-10212959 | None:intergenic |
| AGAAATATGTCCAGGGACTG+AGG | 0.600199 | 5_3:+10216303 | Msa0797870:CDS |
| TCTAATCTTGTTGAGCAATG+TGG | 0.610404 | 5_3:+10215910 | Msa0797870:CDS |
| GATTTATGGGGTGCATTTCG+GGG | 0.613900 | 5_3:+10216148 | Msa0797870:CDS |
| TGCTTGCTCTATACATGCTG+TGG | 0.616690 | 5_3:+10216342 | Msa0797870:CDS |
| GACACAAGTTTGCATCTGCA+CGG | 0.627606 | 5_3:+10217083 | Msa0797870:three_prime_UTR |
| GCCAGTACTATTGAGGCCAG+TGG | 0.629085 | 5_3:+10216280 | Msa0797870:CDS |
| GAATGAAGAATGAACCTGAA+GGG | 0.630480 | 5_3:-10212782 | None:intergenic |
| GTGACTAGCGACCCAAGCAG+AGG | 0.631762 | 5_3:-10212739 | None:intergenic |
| ATATTTGCAGCAGATTTATG+GGG | 0.637528 | 5_3:+10216136 | Msa0797870:CDS |
| ATTACAAAAGCTAATACCAA+AGG | 0.638722 | 5_3:-10217049 | None:intergenic |
| AATATATTGAAAGTGTTCGG+TGG | 0.644057 | 5_3:-10216918 | None:intergenic |
| AGGGTCAACAACGACATGAG+AGG | 0.647077 | 5_3:-10212763 | None:intergenic |
| AAGCGTAAAATCAGGAACAC+CGG | 0.650815 | 5_3:+10216384 | Msa0797870:CDS |
| AGAGACCATTCAGTGTACAA+AGG | 0.651647 | 5_3:+10216082 | Msa0797870:CDS |
| ACATGCTGTGGAGAAAATGA+GGG | 0.657262 | 5_3:+10216354 | Msa0797870:CDS |
| TTTGGCATCTGGGCTAAAGG+CGG | 0.659504 | 5_3:+10215040 | Msa0797870:CDS |
| CTAACGCGTTCATCTTCCAA+AGG | 0.660325 | 5_3:-10215695 | None:intergenic |
| CCAGTGGAGAAATATGTCCA+GGG | 0.676368 | 5_3:+10216296 | Msa0797870:CDS |
| AATATGTCCAGGGACTGAGG+AGG | 0.705255 | 5_3:+10216306 | Msa0797870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATATAAAAATACTTGA+CGG | - | chr5_3:10216108-10216127 | None:intergenic | 10.0% |
| !! | TGAAATGAAAAAAATAATAA+GGG | - | chr5_3:10216786-10216805 | None:intergenic | 10.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | - | chr5_3:10213120-10213139 | None:intergenic | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | + | chr5_3:10213119-10213138 | Msa0797870:intron | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | + | chr5_3:10213143-10213162 | Msa0797870:intron | 15.0% |
| !!! | CATTTTGAAACAAATTTTTT+TGG | + | chr5_3:10213246-10213265 | Msa0797870:intron | 15.0% |
| !!! | ATTATTTTCATATAAGCTAA+AGG | + | chr5_3:10213824-10213843 | Msa0797870:intron | 15.0% |
| !!! | TTTTTCAAAAGTAATTGATT+TGG | + | chr5_3:10214136-10214155 | Msa0797870:intron | 15.0% |
| !! | AGAAATAATCATATATCATA+TGG | + | chr5_3:10214678-10214697 | Msa0797870:intron | 15.0% |
| !! | GTGAAATGAAAAAAATAATA+AGG | - | chr5_3:10216787-10216806 | None:intergenic | 15.0% |
| !!! | AATAATATATTGAAAGTGTT+CGG | - | chr5_3:10216924-10216943 | None:intergenic | 15.0% |
| !! | ATTATTAAGCATATGATATA+TGG | + | chr5_3:10216938-10216957 | Msa0797870:exon | 15.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | - | chr5_3:10213129-10213148 | None:intergenic | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | + | chr5_3:10213206-10213225 | Msa0797870:intron | 20.0% |
| !!! | TTCAATTTATCTGCATATTT+TGG | + | chr5_3:10213572-10213591 | Msa0797870:intron | 20.0% |
| !! | ACATAATGTGAATATGAAAA+TGG | + | chr5_3:10214061-10214080 | Msa0797870:intron | 20.0% |
| !! | ATATTAATAAAGCAATACAC+AGG | - | chr5_3:10214187-10214206 | None:intergenic | 20.0% |
| !! | CAACTCTTTGTATTAAATTA+AGG | + | chr5_3:10214356-10214375 | Msa0797870:intron | 20.0% |
| !! | TTTGTATTAAATTAAGGCAT+CGG | + | chr5_3:10214362-10214381 | Msa0797870:intron | 20.0% |
| !! | TCAACAAATGAAAGAAAATA+AGG | - | chr5_3:10214656-10214675 | None:intergenic | 20.0% |
| !!! | TTGTTGGTTTTTATTCTTTT+TGG | + | chr5_3:10214706-10214725 | Msa0797870:intron | 20.0% |
| !! | AGTTGACAAATATATGAAAT+AGG | + | chr5_3:10214878-10214897 | Msa0797870:intron | 20.0% |
| !! | ACAAATATATGAAATAGGAT+TGG | + | chr5_3:10214883-10214902 | Msa0797870:intron | 20.0% |
| !! | GGATTTGAATTATGATAATT+TGG | + | chr5_3:10215022-10215041 | Msa0797870:CDS | 20.0% |
| !!! | GTATTTTCAAAAAGATGTAT+TGG | + | chr5_3:10215533-10215552 | Msa0797870:intron | 20.0% |
| !! | CAAATTCAATTCATAATGTT+AGG | + | chr5_3:10215632-10215651 | Msa0797870:intron | 20.0% |
| !!! | AGCTTTTGTAATTTTGAAAA+TGG | + | chr5_3:10217060-10217079 | Msa0797870:three_prime_UTR | 20.0% |
| !!! | GCTTTTGTAATTTTGAAAAT+GGG | + | chr5_3:10217061-10217080 | Msa0797870:three_prime_UTR | 20.0% |
| !! | TTCGAAAAAAATTCTACAAA+AGG | + | chr5_3:10217129-10217148 | Msa0797870:three_prime_UTR | 20.0% |
| !!! | TGATTATGCGATTTTTTTCA+GGG | + | chr5_3:10212855-10212874 | Msa0797870:intron | 25.0% |
| !!! | GGGATTCATTATTTTGATAA+TGG | + | chr5_3:10212935-10212954 | Msa0797870:CDS | 25.0% |
| !! | TTTCTTTCAAGTGTAATGTA+TGG | + | chr5_3:10213490-10213509 | Msa0797870:intron | 25.0% |
| ! | GATAAATATGCAAAAAACAG+GGG | - | chr5_3:10213526-10213545 | None:intergenic | 25.0% |
| ! | CGATAAATATGCAAAAAACA+GGG | - | chr5_3:10213527-10213546 | None:intergenic | 25.0% |
| ! | ACGATAAATATGCAAAAAAC+AGG | - | chr5_3:10213528-10213547 | None:intergenic | 25.0% |
| ! | GAATTCATTGCATAATAACA+AGG | - | chr5_3:10213607-10213626 | None:intergenic | 25.0% |
| ! | TGTGATTAAGTTAATATACC+TGG | + | chr5_3:10214022-10214041 | Msa0797870:intron | 25.0% |
| ! | GAAAAATAACATCACAGATA+TGG | - | chr5_3:10214122-10214141 | None:intergenic | 25.0% |
| !! | ACATTTTGTCAACTACATTT+TGG | + | chr5_3:10214159-10214178 | Msa0797870:intron | 25.0% |
| ! | AAGATGAATATGTTTGAAAG+CGG | - | chr5_3:10214255-10214274 | None:intergenic | 25.0% |
| ! | ATATCATATGGAACTATTGT+TGG | + | chr5_3:10214690-10214709 | Msa0797870:intron | 25.0% |
| !! | AATCTTTTCTCGTTATGTAA+AGG | - | chr5_3:10214781-10214800 | None:intergenic | 25.0% |
| ! | AAGATTATGATAGTTGTTGT+TGG | + | chr5_3:10214795-10214814 | Msa0797870:intron | 25.0% |
| !! | AGATTATGATAGTTGTTGTT+GGG | + | chr5_3:10214796-10214815 | Msa0797870:intron | 25.0% |
| ! | AATTATGATAATTTGGCATC+TGG | + | chr5_3:10215029-10215048 | Msa0797870:CDS | 25.0% |
| ! | ATTATGATAATTTGGCATCT+GGG | + | chr5_3:10215030-10215049 | Msa0797870:CDS | 25.0% |
| ! | AAAACATGAACTGTATTGAA+GGG | - | chr5_3:10215213-10215232 | None:intergenic | 25.0% |
| ! | AAAAACATGAACTGTATTGA+AGG | - | chr5_3:10215214-10215233 | None:intergenic | 25.0% |
| !! | ATCTAATCTTTTTCTTCAAG+TGG | + | chr5_3:10215508-10215527 | Msa0797870:intron | 25.0% |
| ! | AAGACAAGAAAAGAAGAAAA+TGG | - | chr5_3:10215988-10216007 | None:intergenic | 25.0% |
| ! | TTCCTTGTATGACAATTAAA+GGG | - | chr5_3:10216531-10216550 | None:intergenic | 25.0% |
| ! | ATTCCTTGTATGACAATTAA+AGG | - | chr5_3:10216532-10216551 | None:intergenic | 25.0% |
| ! | CATGTAAAAATTGTATGAAG+TGG | + | chr5_3:10216635-10216654 | Msa0797870:intron | 25.0% |
| !! | ATATGGTATTATGTCATTTC+AGG | + | chr5_3:10216831-10216850 | Msa0797870:intron | 25.0% |
| !! | TAGAACAAGAAAATTTTGTC+TGG | + | chr5_3:10216989-10217008 | Msa0797870:three_prime_UTR | 25.0% |
| !!! | AGAAAATTTTGTCTGGTTTA+AGG | + | chr5_3:10216996-10217015 | Msa0797870:three_prime_UTR | 25.0% |
| ! | TAAGGTAACTATCTAAGAAA+AGG | + | chr5_3:10217014-10217033 | Msa0797870:three_prime_UTR | 25.0% |
| ! | ATTACAAAAGCTAATACCAA+AGG | - | chr5_3:10217052-10217071 | None:intergenic | 25.0% |
| ! | CAAAGCTTTATGGAAAAAAC+TGG | - | chr5_3:10212645-10212664 | None:intergenic | 30.0% |
| !!! | CAGTTTTTTCCATAAAGCTT+TGG | + | chr5_3:10212643-10212662 | Msa0797870:five_prime_UTR | 30.0% |
| !!! | TCCATAAAGCTTTGGTTTTT+AGG | + | chr5_3:10212651-10212670 | Msa0797870:five_prime_UTR | 30.0% |
| !!! | CCATAAAGCTTTGGTTTTTA+GGG | + | chr5_3:10212652-10212671 | Msa0797870:five_prime_UTR | 30.0% |
| GTTCATTCATCACATTGAAA+CGG | + | chr5_3:10212674-10212693 | Msa0797870:five_prime_UTR | 30.0% | |
| !!! | GTGATTATGCGATTTTTTTC+AGG | + | chr5_3:10212854-10212873 | Msa0797870:intron | 30.0% |
| ! | TGTTCAGTACTTGTTTGTTT+TGG | + | chr5_3:10212967-10212986 | Msa0797870:CDS | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | - | chr5_3:10213037-10213056 | None:intergenic | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | + | chr5_3:10213038-10213057 | Msa0797870:intron | 30.0% |
| !! | GTAGTGTGAAGAGTATTAAT+TGG | + | chr5_3:10213168-10213187 | Msa0797870:intron | 30.0% |
| !! | TGTGAAGAGTATTAATTGGA+GGG | + | chr5_3:10213172-10213191 | Msa0797870:intron | 30.0% |
| TGCAATGAATTCATGTTGAT+TGG | + | chr5_3:10213615-10213634 | Msa0797870:intron | 30.0% | |
| ! | TGAATTCATGTTGATTGGTT+TGG | + | chr5_3:10213620-10213639 | Msa0797870:intron | 30.0% |
| GTGTACCTATAACTAGAAAA+AGG | + | chr5_3:10213644-10213663 | Msa0797870:intron | 30.0% | |
| AATTCTAGTATAGACATGCT+TGG | + | chr5_3:10213702-10213721 | Msa0797870:intron | 30.0% | |
| !! | CTTATTTTCACAAGCTTTTC+AGG | - | chr5_3:10213867-10213886 | None:intergenic | 30.0% |
| ! | AATAAGTTGAAAGTTGTTCG+TGG | + | chr5_3:10213881-10213900 | Msa0797870:intron | 30.0% |
| AAACACTTGTGAGATTATGT+CGG | - | chr5_3:10213936-10213955 | None:intergenic | 30.0% | |
| TCAAATAAGCCAATTCAAAC+TGG | + | chr5_3:10213972-10213991 | Msa0797870:intron | 30.0% | |
| TACCAAAAAAGTTCTTGCAA+GGG | - | chr5_3:10213998-10214017 | None:intergenic | 30.0% | |
| ATACCAAAAAAGTTCTTGCA+AGG | - | chr5_3:10213999-10214018 | None:intergenic | 30.0% | |
| TATTCAAGAGGTTGCAAATT+TGG | + | chr5_3:10214092-10214111 | Msa0797870:intron | 30.0% | |
| AATATTGTGTGACTAATTGC+TGG | + | chr5_3:10214202-10214221 | Msa0797870:intron | 30.0% | |
| TAGCATTTGTCAATAAAGGA+AGG | - | chr5_3:10214232-10214251 | None:intergenic | 30.0% | |
| TTCAAACATATTCATCTTCC+TGG | + | chr5_3:10214257-10214276 | Msa0797870:intron | 30.0% | |
| AACTGTCAAAAACTACCAAA+AGG | - | chr5_3:10214517-10214536 | None:intergenic | 30.0% | |
| !!! | TATTCTTTTTGGTGTTGAGT+TGG | + | chr5_3:10214717-10214736 | Msa0797870:intron | 30.0% |
| GTAAAATATCTCCTAGTCAT+AGG | + | chr5_3:10214905-10214924 | Msa0797870:intron | 30.0% | |
| TATGCTAAAATCCTATGACT+AGG | - | chr5_3:10214919-10214938 | None:intergenic | 30.0% | |
| ! | TTCTTGTTTCACAACAGATA+AGG | + | chr5_3:10215001-10215020 | Msa0797870:intron | 30.0% |
| TTACATCTTCATGCATAGAT+TGG | + | chr5_3:10215155-10215174 | Msa0797870:intron | 30.0% | |
| AAACATGAACTGTATTGAAG+GGG | - | chr5_3:10215212-10215231 | None:intergenic | 30.0% | |
| ! | TGATATTTGAGACTACAGTT+TGG | + | chr5_3:10215243-10215262 | Msa0797870:intron | 30.0% |
| AGTTTGGTAGGAATATTCAA+GGG | + | chr5_3:10215259-10215278 | Msa0797870:intron | 30.0% | |
| AAAACTATTGCGTTCAAACT+GGG | - | chr5_3:10215409-10215428 | None:intergenic | 30.0% | |
| TTGCATATAACTGTGACTAA+AGG | - | chr5_3:10215762-10215781 | None:intergenic | 30.0% | |
| AGATATTTGCAGCAGATTTA+TGG | + | chr5_3:10216134-10216153 | Msa0797870:CDS | 30.0% | |
| GATATTTGCAGCAGATTTAT+GGG | + | chr5_3:10216135-10216154 | Msa0797870:CDS | 30.0% | |
| ATATTTGCAGCAGATTTATG+GGG | + | chr5_3:10216136-10216155 | Msa0797870:CDS | 30.0% | |
| AACTCTATACATTGAACATG+GGG | - | chr5_3:10216448-10216467 | None:intergenic | 30.0% | |
| GAACTCTATACATTGAACAT+GGG | - | chr5_3:10216449-10216468 | None:intergenic | 30.0% | |
| AGAACTCTATACATTGAACA+TGG | - | chr5_3:10216450-10216469 | None:intergenic | 30.0% | |
| AAAAGTAAACGACAATTGAC+TGG | + | chr5_3:10216500-10216519 | Msa0797870:intron | 30.0% | |
| TTCCCTTTAATTGTCATACA+AGG | + | chr5_3:10216526-10216545 | Msa0797870:intron | 30.0% | |
| CGTGTAAAAATTGTATGAAG+TGG | + | chr5_3:10216609-10216628 | Msa0797870:intron | 30.0% | |
| !!! | TGGTGACATATTTTAGAGTT+TGG | + | chr5_3:10216655-10216674 | Msa0797870:intron | 30.0% |
| CCATATTTAAGTCAGAAAGA+TGG | - | chr5_3:10216817-10216836 | None:intergenic | 30.0% | |
| CCATCTTTCTGACTTAAATA+TGG | + | chr5_3:10216814-10216833 | Msa0797870:intron | 30.0% | |
| !! | AATATATTGAAAGTGTTCGG+TGG | - | chr5_3:10216921-10216940 | None:intergenic | 30.0% |
| ! | AGATACGTTTGCGTGTTTTT+GGG | - | chr5_3:10212559-10212578 | None:intergenic | 35.0% |
| ! | TAGATACGTTTGCGTGTTTT+TGG | - | chr5_3:10212560-10212579 | None:intergenic | 35.0% |
| CCCTAAAAACCAAAGCTTTA+TGG | - | chr5_3:10212655-10212674 | None:intergenic | 35.0% | |
| GAATGAAGAATGAACCTGAA+GGG | - | chr5_3:10212785-10212804 | None:intergenic | 35.0% | |
| TGAAAAAGATACAGCGTTAG+TGG | - | chr5_3:10212807-10212826 | None:intergenic | 35.0% | |
| AACCTTCGGAATAGAATCAA+TGG | - | chr5_3:10212900-10212919 | None:intergenic | 35.0% | |
| ATTCTATTCCGAAGGTTGAA+TGG | + | chr5_3:10212903-10212922 | Msa0797870:CDS | 35.0% | |
| TTCTATTCCGAAGGTTGAAT+GGG | + | chr5_3:10212904-10212923 | Msa0797870:CDS | 35.0% | |
| TCAAAATCCCATTCAACCTT+CGG | - | chr5_3:10212914-10212933 | None:intergenic | 35.0% | |
| ! | AAGGTTGAATGGGATTTTGA+AGG | + | chr5_3:10212914-10212933 | Msa0797870:CDS | 35.0% |
| ! | AGGTTGAATGGGATTTTGAA+GGG | + | chr5_3:10212915-10212934 | Msa0797870:CDS | 35.0% |
| !! | ATGCTTTGAACTTTTGCTTC+TGG | + | chr5_3:10212990-10213009 | Msa0797870:CDS | 35.0% |
| !! | GTGTGAAGAGTATTAATTGG+AGG | + | chr5_3:10213171-10213190 | Msa0797870:intron | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | + | chr5_3:10213272-10213291 | Msa0797870:intron | 35.0% |
| TCATATGTTCATGCCATTGT+TGG | + | chr5_3:10213408-10213427 | Msa0797870:intron | 35.0% | |
| ! | AGTGTAATGTATGGTGTTGA+TGG | + | chr5_3:10213499-10213518 | Msa0797870:intron | 35.0% |
| !!! | CGTCTCCTTTTTCTAGTTAT+AGG | - | chr5_3:10213652-10213671 | None:intergenic | 35.0% |
| ! | CTTTTCTCGTTACAAGAGTT+TGG | + | chr5_3:10213673-10213692 | Msa0797870:intron | 35.0% |
| ATGGTCTGTGAATATTCAAG+AGG | + | chr5_3:10214080-10214099 | Msa0797870:intron | 35.0% | |
| ! | GATCGTTGATTAAAAATGCC+AGG | - | chr5_3:10214278-10214297 | None:intergenic | 35.0% |
| TAGTACAGAACAGAATCAAC+TGG | + | chr5_3:10214546-10214565 | Msa0797870:intron | 35.0% | |
| ! | CTTCTCTCTGTTCGATTTTA+AGG | + | chr5_3:10214609-10214628 | Msa0797870:intron | 35.0% |
| !! | TGTTCGATTTTAAGGAGACT+AGG | + | chr5_3:10214617-10214636 | Msa0797870:intron | 35.0% |
| GTTATGTAAAGGCTACTATG+TGG | - | chr5_3:10214770-10214789 | None:intergenic | 35.0% | |
| ! | GTGTTATTAGGATGATTAGC+CGG | + | chr5_3:10214833-10214852 | Msa0797870:intron | 35.0% |
| ATGTCAACTAAACAACTGAC+CGG | - | chr5_3:10214855-10214874 | None:intergenic | 35.0% | |
| ! | TTAGCATATCTTTTTCCCTC+TGG | + | chr5_3:10214931-10214950 | Msa0797870:intron | 35.0% |
| AAAGAACAGAAATAATGCCG+AGG | - | chr5_3:10214964-10214983 | None:intergenic | 35.0% | |
| ! | TACCAGTATACTTTTGCAGA+CGG | - | chr5_3:10215100-10215119 | None:intergenic | 35.0% |
| AGTATACTGGTAATTCTGCT+TGG | + | chr5_3:10215108-10215127 | Msa0797870:intron | 35.0% | |
| GAAGATGTAAGTTTGCATAC+AGG | - | chr5_3:10215145-10215164 | None:intergenic | 35.0% | |
| ! | TCTTCATGCATAGATTGGTT+TGG | + | chr5_3:10215160-10215179 | Msa0797870:intron | 35.0% |
| ! | ATTTGAGACTACAGTTTGGT+AGG | + | chr5_3:10215247-10215266 | Msa0797870:intron | 35.0% |
| CAGTTTGGTAGGAATATTCA+AGG | + | chr5_3:10215258-10215277 | Msa0797870:intron | 35.0% | |
| TACAGTTACATACCACTTAG+TGG | + | chr5_3:10215325-10215344 | Msa0797870:intron | 35.0% | |
| CAAAACTATTGCGTTCAAAC+TGG | - | chr5_3:10215410-10215429 | None:intergenic | 35.0% | |
| TAGCAATTACAAATCGACTG+TGG | - | chr5_3:10215473-10215492 | None:intergenic | 35.0% | |
| ! | AACTTCGTGAGCTTTTGAAT+TGG | + | chr5_3:10215660-10215679 | Msa0797870:CDS | 35.0% |
| TACCATTCACTTCTATTGCT+AGG | + | chr5_3:10215849-10215868 | Msa0797870:intron | 35.0% | |
| AACCTAGCAATAGAAGTGAA+TGG | - | chr5_3:10215854-10215873 | None:intergenic | 35.0% | |
| ATTCACTTCTATTGCTAGGT+TGG | + | chr5_3:10215853-10215872 | Msa0797870:intron | 35.0% | |
| ! | GAACTGGAAAGGAATTTTGA+CGG | + | chr5_3:10215880-10215899 | Msa0797870:CDS | 35.0% |
| TCTAATCTTGTTGAGCAATG+TGG | + | chr5_3:10215910-10215929 | Msa0797870:CDS | 35.0% | |
| AAAGAAGAAAATGGTCTACC+AGG | - | chr5_3:10215979-10215998 | None:intergenic | 35.0% | |
| CCTAGAACATTTCATAGCAA+GGG | - | chr5_3:10216058-10216077 | None:intergenic | 35.0% | |
| AACAATGTAGTCTGCCATTA+TGG | - | chr5_3:10216212-10216231 | None:intergenic | 35.0% | |
| AATCAGAGAAAAGAACTCAC+CGG | - | chr5_3:10216406-10216425 | None:intergenic | 35.0% | |
| CATACAAGGAATCATTTCCT+CGG | + | chr5_3:10216540-10216559 | Msa0797870:intron | 35.0% | |
| !! | GAGTTTGGTAATGTATCAGT+AGG | + | chr5_3:10216670-10216689 | Msa0797870:intron | 35.0% |
| !! | TTTTTCAGTTTCAGGCAAGA+GGG | - | chr5_3:10216741-10216760 | None:intergenic | 35.0% |
| !! | ATTTTTCAGTTTCAGGCAAG+AGG | - | chr5_3:10216742-10216761 | None:intergenic | 35.0% |
| !! | AAAGGTGATACCTTAGCTTT+TGG | + | chr5_3:10217147-10217166 | Msa0797870:three_prime_UTR | 35.0% |
| !! | CGTTTTGTTCTTAGTTTCGC+GGG | - | chr5_3:10212605-10212624 | None:intergenic | 40.0% |
| !! | GCGTTTTGTTCTTAGTTTCG+CGG | - | chr5_3:10212606-10212625 | None:intergenic | 40.0% |
| GCAGCATTGTGAAAACTCAA+TGG | + | chr5_3:10212701-10212720 | Msa0797870:exon | 40.0% | |
| GGAATGAAGAATGAACCTGA+AGG | - | chr5_3:10212786-10212805 | None:intergenic | 40.0% | |
| !! | CACCATTGATTCTATTCCGA+AGG | + | chr5_3:10212895-10212914 | Msa0797870:CDS | 40.0% |
| !! | AACAAGTACTGAACAGTGAG+TGG | - | chr5_3:10212962-10212981 | None:intergenic | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr5_3:10213276-10213295 | None:intergenic | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr5_3:10213276-10213295 | Msa0797870:intron | 40.0% |
| AGAAGACGTGTTTCACATGT+CGG | - | chr5_3:10213443-10213462 | None:intergenic | 40.0% | |
| AGATTATGTCGGAGAGCTTA+TGG | - | chr5_3:10213925-10213944 | None:intergenic | 40.0% | |
| GCGGTAGCATTTGTCAATAA+AGG | - | chr5_3:10214236-10214255 | None:intergenic | 40.0% | |
| GCAGTGTATACGCAATTGTA+TGG | - | chr5_3:10214418-10214437 | None:intergenic | 40.0% | |
| TTGTGTGTCTAGCACAGTAA+GGG | - | chr5_3:10214440-10214459 | None:intergenic | 40.0% | |
| TTTGTGTGTCTAGCACAGTA+AGG | - | chr5_3:10214441-10214460 | None:intergenic | 40.0% | |
| ! | GTTCTTGACAACACACCTTT+TGG | + | chr5_3:10214499-10214518 | Msa0797870:intron | 40.0% |
| TACAGAACAGAATCAACTGG+AGG | + | chr5_3:10214549-10214568 | Msa0797870:intron | 40.0% | |
| GGAGGTAAGAAATTGTGCTT+AGG | + | chr5_3:10214567-10214586 | Msa0797870:intron | 40.0% | |
| !! | TCGATTTTAAGGAGACTAGG+TGG | + | chr5_3:10214620-10214639 | Msa0797870:intron | 40.0% |
| GAGTTGGAGTTTGAACACAA+TGG | + | chr5_3:10214733-10214752 | Msa0797870:intron | 40.0% | |
| ! | ATGATAGTTGTTGTTGGGTG+TGG | + | chr5_3:10214801-10214820 | Msa0797870:intron | 40.0% |
| TAATTTGGCATCTGGGCTAA+AGG | + | chr5_3:10215037-10215056 | Msa0797870:CDS | 40.0% | |
| GTTTGCATACAGGAAATGCA+AGG | - | chr5_3:10215135-10215154 | None:intergenic | 40.0% | |
| TGGTAGGAATATTCAAGGGT+AGG | + | chr5_3:10215263-10215282 | Msa0797870:intron | 40.0% | |
| ACACTGTAAACCTGCATTCA+TGG | + | chr5_3:10215379-10215398 | Msa0797870:intron | 40.0% | |
| TTGGCATCTCTGTTTACATC+AGG | + | chr5_3:10215552-10215571 | Msa0797870:intron | 40.0% | |
| TTCAAAAGCTCACGAAGTTG+TGG | - | chr5_3:10215659-10215678 | None:intergenic | 40.0% | |
| ! | TTGCTAGGTTGGAATTGAAC+TGG | + | chr5_3:10215864-10215883 | Msa0797870:intron | 40.0% |
| AGGTTGGAATTGAACTGGAA+AGG | + | chr5_3:10215869-10215888 | Msa0797870:intron | 40.0% | |
| AGGAAAATGACGTGCAACAA+GGG | - | chr5_3:10215959-10215978 | None:intergenic | 40.0% | |
| CAAGGGTCAGTGAAACAAAT+TGG | - | chr5_3:10216041-10216060 | None:intergenic | 40.0% | |
| ! | CCCTTGCTATGAAATGTTCT+AGG | + | chr5_3:10216055-10216074 | Msa0797870:intron | 40.0% |
| GCCTAGAACATTTCATAGCA+AGG | - | chr5_3:10216059-10216078 | None:intergenic | 40.0% | |
| AGAGACCATTCAGTGTACAA+AGG | + | chr5_3:10216082-10216101 | Msa0797870:CDS | 40.0% | |
| CAGATTTATGGGGTGCATTT+CGG | + | chr5_3:10216146-10216165 | Msa0797870:CDS | 40.0% | |
| AGATTTATGGGGTGCATTTC+GGG | + | chr5_3:10216147-10216166 | Msa0797870:CDS | 40.0% | |
| !! | TCAATAGTACTGGCAAGTGT+TGG | - | chr5_3:10216274-10216293 | None:intergenic | 40.0% |
| AACACTTGCCAGTACTATTG+AGG | + | chr5_3:10216273-10216292 | Msa0797870:CDS | 40.0% | |
| TACATGCTGTGGAGAAAATG+AGG | + | chr5_3:10216353-10216372 | Msa0797870:CDS | 40.0% | |
| ACATGCTGTGGAGAAAATGA+GGG | + | chr5_3:10216354-10216373 | Msa0797870:CDS | 40.0% | |
| GAGCTGATAAGCGTAAAATC+AGG | + | chr5_3:10216376-10216395 | Msa0797870:CDS | 40.0% | |
| AAGCGTAAAATCAGGAACAC+CGG | + | chr5_3:10216384-10216403 | Msa0797870:CDS | 40.0% | |
| ATTGAACATGGGGAACAATG+AGG | - | chr5_3:10216438-10216457 | None:intergenic | 40.0% | |
| TTTCCTCGGACATTCATTTC+TGG | + | chr5_3:10216554-10216573 | Msa0797870:intron | 40.0% | |
| ! | TTTTCAGTTTCAGGCAAGAG+GGG | - | chr5_3:10216740-10216759 | None:intergenic | 40.0% |
| !! | GGCAACGATTTTTCAGTTTC+AGG | - | chr5_3:10216749-10216768 | None:intergenic | 40.0% |
| ATAAGGGAAGTGAAGAGTGA+TGG | - | chr5_3:10216770-10216789 | None:intergenic | 40.0% | |
| AAGGTGAATGACTGTACCTT+TGG | + | chr5_3:10217033-10217052 | Msa0797870:three_prime_UTR | 40.0% | |
| ! | GTTTTCATGCTGAACGTGAG+GGG | - | chr5_3:10212583-10212602 | None:intergenic | 45.0% |
| ! | GGTTTTCATGCTGAACGTGA+GGG | - | chr5_3:10212584-10212603 | None:intergenic | 45.0% |
| ! | TTGAACTTTTGCTTCTGGCC+TGG | + | chr5_3:10212995-10213014 | Msa0797870:CDS | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr5_3:10213275-10213294 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr5_3:10213275-10213294 | Msa0797870:intron | 45.0% |
| AAGCAGTCACATACGAACAC+CGG | + | chr5_3:10213337-10213356 | Msa0797870:intron | 45.0% | |
| ! | ACTTTTACCAGTGTCGTGTC+CGG | - | chr5_3:10213359-10213378 | None:intergenic | 45.0% |
| TTGCAAGGGCCAGTTTGAAT+TGG | - | chr5_3:10213984-10214003 | None:intergenic | 45.0% | |
| !!! | GGCCCTTGCAAGAACTTTTT+TGG | + | chr5_3:10213993-10214012 | Msa0797870:intron | 45.0% |
| ATACCTGGAGAACGTGTTGT+TGG | + | chr5_3:10214037-10214056 | Msa0797870:intron | 45.0% | |
| !! | TGGTGCTCTAGGGTGTTATT+AGG | + | chr5_3:10214821-10214840 | Msa0797870:intron | 45.0% |
| TTCCCTCTGGCTATTAACCT+CGG | + | chr5_3:10214944-10214963 | Msa0797870:intron | 45.0% | |
| ! | GACCGTCTGCAAAAGTATAC+TGG | + | chr5_3:10215095-10215114 | Msa0797870:CDS | 45.0% |
| CCTGATTACGTACCACTAAG+TGG | - | chr5_3:10215340-10215359 | None:intergenic | 45.0% | |
| CCACTTAGTGGTACGTAATC+AGG | + | chr5_3:10215337-10215356 | Msa0797870:intron | 45.0% | |
| ATTGCCTCAAGTGCTTGAGT+AGG | + | chr5_3:10215445-10215464 | Msa0797870:intron | 45.0% | |
| TCTGTTTACATCAGGCCTTG+TGG | + | chr5_3:10215560-10215579 | Msa0797870:intron | 45.0% | |
| AAGCAAGCAAATCCACCACA+AGG | - | chr5_3:10215578-10215597 | None:intergenic | 45.0% | |
| CGTTCATCTTCCAAAGGAAG+GGG | - | chr5_3:10215692-10215711 | None:intergenic | 45.0% | |
| GCGTTCATCTTCCAAAGGAA+GGG | - | chr5_3:10215693-10215712 | None:intergenic | 45.0% | |
| CTAACGCGTTCATCTTCCAA+AGG | - | chr5_3:10215698-10215717 | None:intergenic | 45.0% | |
| ! | CTTTGGAAGATGAACGCGTT+AGG | + | chr5_3:10215696-10215715 | Msa0797870:CDS | 45.0% |
| ACGCGTTAGGTTACTTCATG+AGG | + | chr5_3:10215709-10215728 | Msa0797870:CDS | 45.0% | |
| CAGGAAAATGACGTGCAACA+AGG | - | chr5_3:10215960-10215979 | None:intergenic | 45.0% | |
| !! | CTTGTTGCACGTCATTTTCC+TGG | + | chr5_3:10215958-10215977 | Msa0797870:CDS | 45.0% |
| GATTTATGGGGTGCATTTCG+GGG | + | chr5_3:10216148-10216167 | Msa0797870:CDS | 45.0% | |
| CTTTAAACTCGCCGTATCCA+TGG | - | chr5_3:10216174-10216193 | None:intergenic | 45.0% | |
| CATCAGCTCTCTGACCATAA+TGG | + | chr5_3:10216195-10216214 | Msa0797870:CDS | 45.0% | |
| CCAGTGGAGAAATATGTCCA+GGG | + | chr5_3:10216296-10216315 | Msa0797870:CDS | 45.0% | |
| AGAAATATGTCCAGGGACTG+AGG | + | chr5_3:10216303-10216322 | Msa0797870:CDS | 45.0% | |
| TGCTTGCTCTATACATGCTG+TGG | + | chr5_3:10216342-10216361 | Msa0797870:CDS | 45.0% | |
| CAACCAGAAATGAATGTCCG+AGG | - | chr5_3:10216560-10216579 | None:intergenic | 45.0% | |
| GACACAAGTTTGCATCTGCA+CGG | + | chr5_3:10217083-10217102 | Msa0797870:three_prime_UTR | 45.0% | |
| !!! | CGTGTTTTTGGGACAGGAGT+AGG | - | chr5_3:10212548-10212567 | None:intergenic | 50.0% |
| !!! | CGTTTGCGTGTTTTTGGGAC+AGG | - | chr5_3:10212554-10212573 | None:intergenic | 50.0% |
| ! | GGGTTTTCATGCTGAACGTG+AGG | - | chr5_3:10212585-10212604 | None:intergenic | 50.0% |
| AGGGTCAACAACGACATGAG+AGG | - | chr5_3:10212766-10212785 | None:intergenic | 50.0% | |
| CATGTCGTTGTTGACCCTTC+AGG | + | chr5_3:10212768-10212787 | Msa0797870:CDS | 50.0% | |
| CGTGTTTCACATGTCGGTGT+TGG | - | chr5_3:10213437-10213456 | None:intergenic | 50.0% | |
| GTTCCAACAACACGTTCTCC+AGG | - | chr5_3:10214043-10214062 | None:intergenic | 50.0% | |
| TTGTTGGGTGTGGTGCTCTA+GGG | + | chr5_3:10214811-10214830 | Msa0797870:intron | 50.0% | |
| TGCCGAGGTTAATAGCCAGA+GGG | - | chr5_3:10214949-10214968 | None:intergenic | 50.0% | |
| ATGCCGAGGTTAATAGCCAG+AGG | - | chr5_3:10214950-10214969 | None:intergenic | 50.0% | |
| TTTGGCATCTGGGCTAAAGG+CGG | + | chr5_3:10215040-10215059 | Msa0797870:CDS | 50.0% | |
| GGGTAGGTAGTTAGATGCAG+AGG | + | chr5_3:10215279-10215298 | Msa0797870:intron | 50.0% | |
| GTGGTACGTAATCAGGTCTC+AGG | + | chr5_3:10215344-10215363 | Msa0797870:intron | 50.0% | |
| ACTGGGCATACCATGAATGC+AGG | - | chr5_3:10215392-10215411 | None:intergenic | 50.0% | |
| GGTTCCTACTCAAGCACTTG+AGG | - | chr5_3:10215452-10215471 | None:intergenic | 50.0% | |
| ! | GTTTACATCAGGCCTTGTGG+TGG | + | chr5_3:10215563-10215582 | Msa0797870:intron | 50.0% |
| TCTTCCAAAGGAAGGGGTCT+AGG | - | chr5_3:10215686-10215705 | None:intergenic | 50.0% | |
| CGCGTTCATCTTCCAAAGGA+AGG | - | chr5_3:10215694-10215713 | None:intergenic | 50.0% | |
| GACGGCCTTTGTACACTGAA+TGG | - | chr5_3:10216090-10216109 | None:intergenic | 50.0% | |
| ! | TCCACTGGCCTCAATAGTAC+TGG | - | chr5_3:10216284-10216303 | None:intergenic | 50.0% |
| GCCAGTGGAGAAATATGTCC+AGG | + | chr5_3:10216295-10216314 | Msa0797870:CDS | 50.0% | |
| CCCTGGACATATTTCTCCAC+TGG | - | chr5_3:10216299-10216318 | None:intergenic | 50.0% | |
| AATATGTCCAGGGACTGAGG+AGG | + | chr5_3:10216306-10216325 | Msa0797870:CDS | 50.0% | |
| GAACATGGGGAACAATGAGG+AGG | - | chr5_3:10216435-10216454 | None:intergenic | 50.0% | |
| ! | GTCATTTCAGGTGCTCAGTG+TGG | + | chr5_3:10216843-10216862 | Msa0797870:intron | 50.0% |
| TCAGTGTGGAGCTGGATCTT+TGG | + | chr5_3:10216857-10216876 | Msa0797870:CDS | 50.0% | |
| ! | TGGAGCTGGATCTTTGGCTT+TGG | + | chr5_3:10216863-10216882 | Msa0797870:CDS | 50.0% |
| !! | GGAGCTGGATCTTTGGCTTT+GGG | + | chr5_3:10216864-10216883 | Msa0797870:CDS | 50.0% |
| !! | GATCTTTGGCTTTGGGCAAC+TGG | + | chr5_3:10216871-10216890 | Msa0797870:CDS | 50.0% |
| ACGTTCGAGCTACCTCTGCT+TGG | + | chr5_3:10212727-10212746 | Msa0797870:CDS | 55.0% | |
| CGTTCGAGCTACCTCTGCTT+GGG | + | chr5_3:10212728-10212747 | Msa0797870:CDS | 55.0% | |
| ! | GGAGGGAGTACATACGTACC+AGG | - | chr5_3:10213016-10213035 | None:intergenic | 55.0% |
| !! | TCGGTGTTGGCGTCCAACAA+TGG | - | chr5_3:10213424-10213443 | None:intergenic | 55.0% |
| GTTGTTGGGTGTGGTGCTCT+AGG | + | chr5_3:10214810-10214829 | Msa0797870:intron | 55.0% | |
| TTGGCCTAGACCCCTTCCTT+TGG | + | chr5_3:10215679-10215698 | Msa0797870:CDS | 55.0% | |
| GCATTTCGGGGCCATGGATA+CGG | + | chr5_3:10216160-10216179 | Msa0797870:CDS | 55.0% | |
| GCCAGTACTATTGAGGCCAG+TGG | + | chr5_3:10216280-10216299 | Msa0797870:CDS | 55.0% | |
| TCAACTTCCTCCTCAGTCCC+TGG | - | chr5_3:10216316-10216335 | None:intergenic | 55.0% | |
| GTGACTAGCGACCCAAGCAG+AGG | - | chr5_3:10212742-10212761 | None:intergenic | 60.0% | |
| ACGAACACCGGACACGACAC+TGG | + | chr5_3:10213349-10213368 | Msa0797870:intron | 60.0% | |
| CCAAGCTGCTGAAGCACAGC+TGG | - | chr5_3:10216235-10216254 | None:intergenic | 60.0% | |
| CCAGCTGTGCTTCAGCAGCT+TGG | + | chr5_3:10216232-10216251 | Msa0797870:CDS | 60.0% | |
| TCAGGTGCTCAGTGTGGAGC+TGG | + | chr5_3:10216849-10216868 | Msa0797870:intron | 60.0% | |
| TGGGGTGCATTTCGGGGCCA+TGG | + | chr5_3:10216154-10216173 | Msa0797870:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 10212536 | 10217178 | 10212536 | ID=Msa0797870;Name=Msa0797870 |
| chr5_3 | mRNA | 10212536 | 10217178 | 10212536 | ID=Msa0797870-mRNA-1;Parent=Msa0797870;Name=Msa0797870-mRNA-1;_AED=0.07;_eAED=0.07;_QI=184|1|1|1|1|1|7|233|305 |
| chr5_3 | exon | 10212536 | 10212789 | 10212536 | ID=Msa0797870-mRNA-1:exon:4328;Parent=Msa0797870-mRNA-1 |
| chr5_3 | exon | 10212876 | 10213016 | 10212876 | ID=Msa0797870-mRNA-1:exon:4329;Parent=Msa0797870-mRNA-1 |
| chr5_3 | exon | 10215018 | 10215116 | 10215018 | ID=Msa0797870-mRNA-1:exon:4330;Parent=Msa0797870-mRNA-1 |
| chr5_3 | exon | 10215654 | 10215730 | 10215654 | ID=Msa0797870-mRNA-1:exon:4331;Parent=Msa0797870-mRNA-1 |
| chr5_3 | exon | 10215871 | 10215979 | 10215871 | ID=Msa0797870-mRNA-1:exon:4332;Parent=Msa0797870-mRNA-1 |
| chr5_3 | exon | 10216077 | 10216405 | 10216077 | ID=Msa0797870-mRNA-1:exon:4333;Parent=Msa0797870-mRNA-1 |
| chr5_3 | exon | 10216853 | 10217178 | 10216853 | ID=Msa0797870-mRNA-1:exon:4334;Parent=Msa0797870-mRNA-1 |
| chr5_3 | five_prime_UTR | 10212536 | 10212719 | 10212536 | ID=Msa0797870-mRNA-1:five_prime_utr;Parent=Msa0797870-mRNA-1 |
| chr5_3 | CDS | 10212720 | 10212789 | 10212720 | ID=Msa0797870-mRNA-1:cds;Parent=Msa0797870-mRNA-1 |
| chr5_3 | CDS | 10212876 | 10213016 | 10212876 | ID=Msa0797870-mRNA-1:cds;Parent=Msa0797870-mRNA-1 |
| chr5_3 | CDS | 10215018 | 10215116 | 10215018 | ID=Msa0797870-mRNA-1:cds;Parent=Msa0797870-mRNA-1 |
| chr5_3 | CDS | 10215654 | 10215730 | 10215654 | ID=Msa0797870-mRNA-1:cds;Parent=Msa0797870-mRNA-1 |
| chr5_3 | CDS | 10215871 | 10215979 | 10215871 | ID=Msa0797870-mRNA-1:cds;Parent=Msa0797870-mRNA-1 |
| chr5_3 | CDS | 10216077 | 10216405 | 10216077 | ID=Msa0797870-mRNA-1:cds;Parent=Msa0797870-mRNA-1 |
| chr5_3 | CDS | 10216853 | 10216945 | 10216853 | ID=Msa0797870-mRNA-1:cds;Parent=Msa0797870-mRNA-1 |
| chr5_3 | three_prime_UTR | 10216946 | 10217178 | 10216946 | ID=Msa0797870-mRNA-1:three_prime_utr;Parent=Msa0797870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
