AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0797910

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0797910 MtrunA17_Chr5g0401821 94.465 271 14 1 1 270 1 271 1.24e-178 492
Msa0797910 MtrunA17_Chr4g0053281 56.765 340 75 9 1 270 1 338 2.35e-104 306
Msa0797910 MtrunA17_Chr4g0071521 44.118 306 106 9 19 266 15 313 5.25e-66 208
Msa0797910 MtrunA17_Chr1g0147881 58.273 139 51 2 138 270 203 340 6.58e-52 172
Msa0797910 MtrunA17_Chr1g0184691 72.897 107 29 0 150 256 245 351 4.73e-44 152
Msa0797910 MtrunA17_Chr3g0139021 54.348 138 62 1 127 264 244 380 3.40e-43 151
Msa0797910 MtrunA17_Chr7g0228941 67.532 77 25 0 179 255 33 109 9.12e-35 121
Msa0797910 MtrunA17_Chr2g0284321 56.977 86 36 1 173 257 9 94 9.52e-29 108
Msa0797910 MtrunA17_Chr8g0379461 52.688 93 37 1 174 259 45 137 1.74e-28 108
Msa0797910 MtrunA17_Chr2g0319961 51.961 102 33 2 174 264 50 146 2.11e-28 109
Msa0797910 MtrunA17_Chr7g0270051 56.180 89 35 1 171 255 22 110 3.23e-28 108
Msa0797910 MtrunA17_Chr2g0293481 56.842 95 36 2 166 255 230 324 1.27e-27 110
Msa0797910 MtrunA17_Chr8g0348311 60.241 83 28 1 173 255 135 212 2.14e-27 108
Msa0797910 MtrunA17_Chr7g0248691 60.241 83 28 1 173 255 134 211 3.11e-27 107
Msa0797910 MtrunA17_Chr1g0202461 57.647 85 30 2 173 256 240 319 2.16e-24 100
Msa0797910 MtrunA17_Chr3g0101131 49.495 99 41 2 173 263 382 479 4.65e-24 101
Msa0797910 MtrunA17_Chr5g0445311 48.958 96 37 2 173 257 328 422 1.88e-23 99.4
Msa0797910 MtrunA17_Chr2g0289181 56.061 66 29 0 191 256 7 72 3.49e-23 94.7
Msa0797910 MtrunA17_Chr7g0270191 49.398 83 41 1 173 255 120 201 1.51e-21 91.7
Msa0797910 MtrunA17_Chr7g0263531 49.333 75 37 1 194 268 357 430 2.86e-21 92.4
Msa0797910 MtrunA17_Chr7g0263531 51.429 70 31 3 187 255 177 244 6.90e-15 73.9
Msa0797910 MtrunA17_Chr7g0218081 61.905 63 23 1 195 257 407 468 1.09e-20 91.3
Msa0797910 MtrunA17_Chr7g0218081 53.226 62 26 3 195 255 224 283 1.55e-13 70.1
Msa0797910 MtrunA17_Chr4g0004911 40.909 132 67 4 128 259 276 396 1.11e-20 91.3
Msa0797910 MtrunA17_Chr4g0004911 52.632 57 26 1 199 255 185 240 6.95e-14 71.2
Msa0797910 MtrunA17_Chr8g0387501 63.158 57 21 0 199 255 130 186 1.66e-20 88.2
Msa0797910 MtrunA17_Chr5g0418191 55.072 69 30 1 195 263 317 384 2.65e-20 89.7
Msa0797910 MtrunA17_Chr5g0418191 46.575 73 37 2 185 257 138 208 2.89e-13 69.3
Msa0797910 MtrunA17_Chr4g0051181 33.908 174 88 5 101 257 139 302 2.69e-20 90.1
Msa0797910 MtrunA17_Chr3g0106491 51.899 79 37 1 179 257 346 423 3.93e-20 89.7
Msa0797910 MtrunA17_Chr3g0106491 54.386 57 24 2 199 255 199 253 1.38e-13 70.5
Msa0797910 MtrunA17_Chr3g0079691 47.368 95 39 2 173 257 460 553 8.85e-20 89.0
Msa0797910 MtrunA17_Chr3g0079691 50.877 57 26 2 199 255 281 335 1.65e-11 64.3
Msa0797910 MtrunA17_Chr4g0042831 51.316 76 36 1 195 270 275 349 9.69e-20 87.8
Msa0797910 MtrunA17_Chr7g0249311 45.714 105 45 3 173 266 356 459 1.23e-19 88.2
Msa0797910 MtrunA17_Chr7g0249311 50.000 58 27 2 199 256 180 235 2.50e-11 63.5
Msa0797910 MtrunA17_Chr5g0432161 51.899 79 37 1 179 257 402 479 1.25e-19 88.2
Msa0797910 MtrunA17_Chr5g0432161 50.877 57 26 2 199 255 245 299 1.47e-12 67.4
Msa0797910 MtrunA17_Chr4g0001361 46.591 88 43 2 172 255 132 219 1.50e-19 86.3
Msa0797910 MtrunA17_Chr3g0136961 55.172 58 26 0 199 256 139 196 1.72e-19 85.9
Msa0797910 MtrunA17_Chr2g0288871 50.000 76 38 0 182 257 289 364 1.90e-19 87.8
Msa0797910 MtrunA17_Chr1g0150801 52.113 71 33 1 185 255 89 158 2.28e-19 82.8
Msa0797910 MtrunA17_Chr3g0099641 50.000 74 37 0 184 257 237 310 3.28e-19 86.7
Msa0797910 MtrunA17_Chr1g0194481 45.783 83 44 1 173 255 133 214 3.29e-19 85.5
Msa0797910 MtrunA17_Chr7g0249301 51.899 79 37 1 179 257 273 350 3.96e-19 85.9
Msa0797910 MtrunA17_Chr7g0249301 51.724 58 26 2 199 256 63 118 6.08e-12 65.1
Msa0797910 MtrunA17_Chr1g0150281 52.632 57 27 0 199 255 141 197 4.07e-19 84.7
Msa0797910 MtrunA17_Chr4g0060271 55.224 67 28 1 195 259 250 316 6.64e-19 86.3
Msa0797910 MtrunA17_Chr4g0074001 47.126 87 41 2 169 255 334 415 6.78e-19 85.9
Msa0797910 MtrunA17_Chr2g0333851 55.000 60 27 0 196 255 167 226 8.04e-19 84.3
Msa0797910 MtrunA17_Chr7g0243891 40.458 131 63 4 128 257 316 432 8.39e-19 85.9
Msa0797910 MtrunA17_Chr7g0243891 52.632 57 25 2 199 255 217 271 3.80e-12 65.9
Msa0797910 MtrunA17_Chr7g0270831 48.649 74 38 0 184 257 202 275 8.52e-19 85.5
Msa0797910 MtrunA17_Chr7g0216891 54.412 68 29 1 195 260 214 281 9.01e-19 85.9
Msa0797910 MtrunA17_Chr4g0051881 47.945 73 37 1 185 257 165 236 1.28e-18 84.0
Msa0797910 MtrunA17_Chr5g0443131 52.113 71 33 1 185 255 144 213 1.87e-18 83.2
Msa0797910 MtrunA17_Chr4g0075201 48.684 76 39 0 182 257 251 326 2.14e-18 84.3
Msa0797910 MtrunA17_Chr2g0322391 47.368 76 40 0 182 257 333 408 2.60e-18 84.3
Msa0797910 MtrunA17_Chr2g0302391 55.932 59 26 0 199 257 212 270 1.14e-17 82.0
Msa0797910 MtrunA17_Chr3g0126391 38.938 113 55 4 146 253 87 190 1.19e-17 81.3
Msa0797910 MtrunA17_Chr4g0025061 55.000 60 27 0 198 257 360 419 1.38e-17 82.4
Msa0797910 MtrunA17_Chr8g0383251 49.315 73 36 1 185 257 95 166 1.43e-17 78.6
Msa0797910 MtrunA17_Chr5g0418781 41.414 99 56 2 173 270 99 196 1.52e-17 80.1
Msa0797910 MtrunA17_Chr8g0335811 42.529 87 46 2 173 256 126 211 3.51e-17 78.2
Msa0797910 MtrunA17_Chr8g0383351 50.794 63 30 1 194 256 156 217 5.13e-17 78.2
Msa0797910 MtrunA17_Chr7g0238921 45.570 79 39 2 177 255 106 180 7.07e-17 79.0
Msa0797910 MtrunA17_Chr3g0129361 45.455 77 41 1 182 258 128 203 7.96e-17 77.4
Msa0797910 MtrunA17_Chr2g0294231 48.000 75 38 1 181 255 186 259 9.82e-17 79.0
Msa0797910 MtrunA17_Chr1g0188941 42.353 85 45 2 173 257 29 109 2.96e-16 72.8
Msa0797910 MtrunA17_Chr5g0447701 47.222 72 37 1 185 256 239 309 3.13e-16 77.8
Msa0797910 MtrunA17_Chr1g0150271 48.387 62 32 0 196 257 99 160 5.46e-16 75.5
Msa0797910 MtrunA17_Chr6g0485431 36.607 112 58 3 165 264 110 220 9.28e-16 76.3
Msa0797910 MtrunA17_Chr4g0025051 53.333 60 28 0 198 257 335 394 1.31e-15 76.3
Msa0797910 MtrunA17_Chr3g0129321 47.887 71 36 1 185 255 105 174 2.16e-15 72.8
Msa0797910 MtrunA17_Chr4g0068541 42.697 89 49 2 182 269 192 279 5.01e-15 74.3
Msa0797910 MtrunA17_Chr7g0275531 54.386 57 24 1 199 253 119 175 1.02e-14 72.8
Msa0797910 MtrunA17_Chr7g0224801 44.286 70 38 1 194 263 89 157 1.15e-14 70.1
Msa0797910 MtrunA17_Chr8g0347251 43.182 88 47 2 169 253 106 193 1.21e-14 72.8
Msa0797910 MtrunA17_Chr8g0387981 41.837 98 48 4 173 266 106 198 2.04e-14 72.4
Msa0797910 MtrunA17_Chr1g0189391 50.649 77 32 3 181 256 84 155 5.46e-14 70.9
Msa0797910 MtrunA17_Chr7g0248721 43.750 80 43 2 176 255 119 196 1.16e-13 68.6
Msa0797910 MtrunA17_Chr5g0402931 52.632 57 24 2 199 255 124 177 1.23e-12 64.7
Msa0797910 MtrunA17_Chr5g0428351 34.783 115 73 1 141 253 126 240 1.61e-11 63.5
Msa0797910 MtrunA17_Chr8g0386241 42.623 61 34 1 195 255 100 159 2.84e-11 61.2
Msa0797910 MtrunA17_Chr7g0244971 32.031 128 67 5 145 269 84 194 9.97e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0797910 AT2G23320.1 47.130 331 100 12 1 270 1 317 7.48e-77 236
Msa0797910 AT4G24240.1 41.573 356 97 9 1 259 1 342 1.50e-73 229
Msa0797910 AT4G31550.1 42.638 326 109 11 1 263 1 311 3.43e-70 219
Msa0797910 AT4G31550.2 42.945 326 107 12 1 263 1 310 2.44e-69 217
Msa0797910 AT2G24570.1 61.240 129 46 1 137 261 178 306 9.83e-53 174
Msa0797910 AT3G04670.1 78.571 98 20 1 159 256 224 320 2.19e-51 171
Msa0797910 AT5G28650.1 61.314 137 46 3 122 256 189 320 6.07e-51 170
Msa0797910 AT2G30590.1 71.296 108 28 2 150 255 264 370 1.15e-50 171
Msa0797910 AT2G23320.2 41.606 274 90 11 1 218 1 260 8.82e-45 152
Msa0797910 AT4G24240.2 36.190 315 90 9 1 218 1 301 8.99e-44 150
Msa0797910 AT4G31550.3 38.434 281 94 12 1 218 1 265 3.06e-40 140
Msa0797910 AT1G29280.1 51.000 100 42 2 167 260 38 136 6.36e-29 110
Msa0797910 AT4G01250.1 51.402 107 44 2 149 255 87 185 2.55e-28 110
Msa0797910 AT3G58710.2 53.922 102 31 2 174 264 40 136 3.58e-28 109
Msa0797910 AT3G58710.1 50.485 103 40 1 173 264 35 137 7.67e-28 108
Msa0797910 AT2G34830.1 57.471 87 32 2 174 255 186 272 1.66e-27 110
Msa0797910 AT2G34830.2 57.471 87 32 2 174 255 195 281 2.03e-27 110
Msa0797910 AT1G30650.1 57.471 87 32 2 174 255 188 274 2.16e-26 107
Msa0797910 AT3G04670.2 75.000 64 15 1 159 222 224 286 1.12e-25 103
Msa0797910 AT5G52830.1 53.012 83 35 1 173 255 144 222 1.78e-23 98.2
Msa0797910 AT5G26170.1 56.944 72 30 1 185 256 100 170 2.94e-23 93.6
Msa0797910 AT4G23550.1 54.545 77 31 1 181 257 127 199 2.26e-22 94.4
Msa0797910 AT2G04880.2 49.412 85 39 2 185 266 270 353 6.71e-22 94.7
Msa0797910 AT2G04880.1 49.412 85 39 2 185 266 294 377 7.03e-22 95.1
Msa0797910 AT4G26640.5 53.947 76 34 1 182 257 189 263 1.03e-21 93.6
Msa0797910 AT4G26640.6 53.947 76 34 1 182 257 189 263 1.03e-21 93.6
Msa0797910 AT4G26640.4 53.947 76 34 1 182 257 189 263 1.03e-21 93.6
Msa0797910 AT4G26640.3 53.947 76 34 1 182 257 189 263 1.03e-21 93.6
Msa0797910 AT4G26640.7 47.368 95 39 2 173 257 306 399 1.62e-21 94.0
Msa0797910 AT4G26640.1 53.947 76 34 1 182 257 293 367 1.66e-21 94.0
Msa0797910 AT4G26640.2 53.947 76 34 1 182 257 365 439 1.67e-21 94.0
Msa0797910 AT1G13960.2 54.795 73 32 1 185 257 243 314 3.60e-21 92.0
Msa0797910 AT1G13960.2 54.839 62 25 3 195 255 72 131 1.53e-14 73.2
Msa0797910 AT2G38470.1 52.632 76 35 1 182 257 346 420 4.85e-21 92.8
Msa0797910 AT2G38470.1 52.632 57 25 2 199 255 185 239 5.03e-13 68.9
Msa0797910 AT1G13960.1 54.795 73 32 1 185 257 396 467 8.33e-21 92.0
Msa0797910 AT1G13960.1 54.839 62 25 3 195 255 225 284 1.64e-14 73.6
Msa0797910 AT5G07100.2 53.425 73 33 1 185 257 128 199 9.07e-21 88.2
Msa0797910 AT5G07100.2 49.123 57 28 1 199 255 25 80 1.58e-11 62.8
Msa0797910 AT5G07100.4 53.425 73 33 1 185 257 128 199 9.07e-21 88.2
Msa0797910 AT5G07100.4 49.123 57 28 1 199 255 25 80 1.58e-11 62.8
Msa0797910 AT5G07100.5 53.425 73 33 1 185 257 128 199 9.07e-21 88.2
Msa0797910 AT5G07100.5 49.123 57 28 1 199 255 25 80 1.58e-11 62.8
Msa0797910 AT5G07100.3 53.425 73 33 1 185 257 128 199 9.07e-21 88.2
Msa0797910 AT5G07100.3 49.123 57 28 1 199 255 25 80 1.58e-11 62.8
Msa0797910 AT1G29860.1 51.316 76 36 1 182 257 120 194 2.02e-20 88.6
Msa0797910 AT5G64810.1 34.239 184 101 6 93 267 7 179 2.09e-20 86.7
Msa0797910 AT4G18170.1 44.706 85 46 1 173 257 147 230 2.41e-20 89.0
Msa0797910 AT5G07100.1 53.425 73 33 1 185 257 221 292 3.77e-20 88.2
Msa0797910 AT5G07100.1 49.123 57 28 1 199 255 118 173 2.38e-11 63.5
Msa0797910 AT5G45050.2 50.602 83 37 1 173 255 1131 1209 4.77e-20 90.1
Msa0797910 AT5G49520.1 49.367 79 39 1 182 260 205 282 4.89e-20 89.0
Msa0797910 AT5G45050.1 50.602 83 37 1 173 255 1159 1237 5.16e-20 90.1
Msa0797910 AT5G45050.4 50.602 83 37 1 173 255 1020 1098 5.36e-20 90.1
Msa0797910 AT2G03340.1 52.055 73 34 1 185 257 402 473 1.30e-19 88.6
Msa0797910 AT2G03340.1 51.389 72 32 3 194 264 245 314 6.62e-16 77.4
Msa0797910 AT1G62300.1 50.000 76 38 0 182 257 296 371 1.34e-19 88.6
Msa0797910 AT4G04450.2 48.684 76 39 0 182 257 182 257 1.76e-19 87.8
Msa0797910 AT5G56270.1 46.875 96 39 2 173 257 451 545 2.17e-19 88.2
Msa0797910 AT4G22070.4 50.000 76 38 0 182 257 281 356 2.23e-19 87.8
Msa0797910 AT4G22070.3 50.000 76 38 0 182 257 281 356 2.23e-19 87.8
Msa0797910 AT4G22070.2 50.000 76 38 0 182 257 281 356 2.23e-19 87.8
Msa0797910 AT4G22070.1 50.000 76 38 0 182 257 281 356 2.23e-19 87.8
Msa0797910 AT5G15130.2 56.716 67 27 1 195 259 180 246 2.85e-19 87.4
Msa0797910 AT5G15130.1 56.716 67 27 1 195 259 222 288 3.31e-19 87.4
Msa0797910 AT4G04450.1 48.684 76 39 0 182 257 276 351 3.60e-19 87.0
Msa0797910 AT2G47260.1 46.988 83 43 1 173 255 149 230 3.87e-19 85.9
Msa0797910 AT4G30935.1 54.098 61 27 1 199 259 332 391 3.98e-19 87.0
Msa0797910 AT1G68150.1 61.818 55 21 0 203 257 240 294 5.48e-19 85.9
Msa0797910 AT4G39410.1 46.512 86 42 2 174 256 196 280 1.29e-18 84.0
Msa0797910 AT4G31800.2 54.386 57 26 0 199 255 112 168 1.30e-18 83.2
Msa0797910 AT4G31800.1 54.386 57 26 0 199 255 177 233 2.04e-18 83.6
Msa0797910 AT4G26440.1 39.098 133 66 3 123 255 311 428 3.90e-18 84.3
Msa0797910 AT4G26440.1 51.724 58 26 2 199 256 179 234 2.59e-11 63.9
Msa0797910 AT1G80840.1 49.254 67 33 1 199 264 147 213 4.68e-18 82.4
Msa0797910 AT2G37260.3 56.250 64 27 1 194 257 265 327 5.44e-18 82.8
Msa0797910 AT2G37260.3 55.172 58 24 2 199 256 86 141 7.93e-13 68.2
Msa0797910 AT2G37260.2 56.250 64 27 1 194 257 263 325 5.51e-18 82.8
Msa0797910 AT2G37260.2 55.172 58 24 2 199 256 84 139 8.16e-13 67.8
Msa0797910 AT3G62340.1 44.706 85 46 1 176 260 96 179 6.24e-18 81.6
Msa0797910 AT2G37260.1 59.322 59 23 1 199 257 350 407 6.31e-18 83.2
Msa0797910 AT2G37260.1 55.172 58 24 2 199 256 166 221 6.55e-13 68.6
Msa0797910 AT3G01080.1 56.250 64 27 1 194 257 302 364 6.39e-18 83.2
Msa0797910 AT3G01080.1 53.226 62 26 3 195 255 163 222 3.01e-13 69.7
Msa0797910 AT3G01080.2 56.250 64 27 1 194 257 340 402 6.46e-18 83.2
Msa0797910 AT3G01080.2 53.226 62 26 3 195 255 201 260 2.37e-13 70.1
Msa0797910 AT4G01720.1 48.684 76 39 0 182 257 223 298 8.36e-18 83.2
Msa0797910 AT1G69310.4 46.341 82 43 1 174 255 123 203 8.97e-18 81.3
Msa0797910 AT1G69310.2 46.341 82 43 1 174 255 123 203 8.97e-18 81.3
Msa0797910 AT1G69310.1 46.341 82 43 1 174 255 123 203 8.97e-18 81.3
Msa0797910 AT1G55600.1 48.052 77 36 2 182 255 288 363 1.33e-17 82.4
Msa0797910 AT2G40740.1 44.330 97 50 3 161 253 134 230 1.53e-17 80.9
Msa0797910 AT1G64000.1 42.857 84 47 1 172 255 88 170 1.75e-17 79.0
Msa0797910 AT2G40740.3 44.330 97 50 3 161 253 143 239 1.89e-17 80.9
Msa0797910 AT2G25000.2 53.448 58 27 0 199 256 104 161 2.19e-17 79.3
Msa0797910 AT2G25000.4 53.448 58 27 0 199 256 104 161 2.19e-17 79.3
Msa0797910 AT5G46350.1 46.575 73 38 1 185 257 170 241 2.94e-17 80.5
Msa0797910 AT2G25000.3 53.448 58 27 0 199 256 126 183 4.94e-17 79.0
Msa0797910 AT2G25000.1 53.448 58 27 0 199 256 147 204 6.41e-17 79.0
Msa0797910 AT2G44745.1 42.857 84 44 2 175 255 119 201 1.07e-16 77.0
Msa0797910 AT5G41570.1 40.860 93 53 2 176 267 76 167 1.14e-16 76.3
Msa0797910 AT3G01970.1 44.595 74 40 1 185 258 52 124 2.83e-16 74.3
Msa0797910 AT1G18860.1 46.250 80 40 2 181 257 219 298 4.59e-16 78.2
Msa0797910 AT2G30250.1 45.205 73 39 1 185 257 315 386 8.03e-16 77.0
Msa0797910 AT2G21900.1 56.140 57 24 1 199 255 110 165 1.59e-15 73.6
Msa0797910 AT5G45260.1 46.835 79 34 2 179 255 1195 1267 1.76e-15 76.6
Msa0797910 AT5G43290.1 56.140 57 24 1 199 255 115 170 8.20e-15 72.8
Msa0797910 AT5G13080.1 43.836 73 40 1 185 257 54 125 1.08e-14 70.1
Msa0797910 AT2G46130.1 50.000 62 30 1 194 255 26 86 1.62e-14 68.6
Msa0797910 AT4G11070.2 39.316 117 65 3 140 253 53 166 1.88e-14 72.0
Msa0797910 AT4G11070.1 39.316 117 65 3 140 253 85 198 2.21e-14 72.0
Msa0797910 AT4G23810.1 37.984 129 71 4 145 265 100 227 5.50e-14 71.2
Msa0797910 AT1G69810.1 51.724 58 27 1 203 259 208 265 7.80e-14 71.2
Msa0797910 AT1G69810.2 50.000 62 30 1 199 259 146 207 1.05e-13 70.5
Msa0797910 AT3G01080.3 53.226 62 26 3 195 255 201 260 1.57e-13 69.7
Msa0797910 AT1G69310.3 43.902 82 41 2 174 255 123 199 2.28e-13 68.9
Msa0797910 AT5G24110.1 42.169 83 45 2 173 253 89 170 6.44e-12 65.1
Msa0797910 AT2G46400.1 40.476 84 46 2 174 253 78 161 6.76e-12 64.7
Msa0797910 AT3G56400.1 29.936 157 100 5 106 253 22 177 1.20e-11 64.3
Msa0797910 AT1G66560.1 49.153 59 28 1 197 253 102 160 1.43e-11 63.5
Msa0797910 AT4G12020.6 50.877 57 26 2 199 255 469 523 2.50e-11 64.3
Msa0797910 AT4G12020.8 50.877 57 26 2 199 255 469 523 2.50e-11 64.3
Msa0797910 AT4G12020.1 50.877 57 26 2 199 255 469 523 2.51e-11 64.3
Msa0797910 AT4G12020.9 50.877 57 26 2 199 255 469 523 2.51e-11 64.3
Msa0797910 AT4G12020.7 50.877 57 26 2 199 255 469 523 2.67e-11 64.3
Msa0797910 AT4G12020.3 50.877 57 26 2 199 255 469 523 2.84e-11 64.3
Msa0797910 AT4G12020.10 50.877 57 26 2 199 255 469 523 2.89e-11 64.3
Msa0797910 AT4G12020.2 50.877 57 26 2 199 255 469 523 3.03e-11 64.3
Msa0797910 AT4G12020.5 50.877 57 26 2 199 255 402 456 3.08e-11 63.9
Msa0797910 AT4G12020.4 50.877 57 26 2 199 255 469 523 3.12e-11 63.9
Msa0797910 AT4G12020.11 50.877 57 26 2 199 255 469 523 3.43e-11 63.9
Msa0797910 AT1G80590.1 47.761 67 29 2 193 253 76 142 4.99e-11 61.6
Msa0797910 AT5G22570.1 46.479 71 32 2 196 260 108 178 5.90e-11 62.0
Msa0797910 AT1G66550.2 47.458 59 29 1 197 253 102 160 6.14e-11 61.6
Msa0797910 AT1G66550.1 47.458 59 29 1 197 253 107 165 6.57e-11 61.6

Find 63 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACAAGTGCAGCAGTGTTAA+AGG 0.223332 5_3:-10273137 Msa0797910:CDS
CAAGTTGTTATAACAGTTAA+TGG 0.246070 5_3:+10272925 None:intergenic
ATTTCACTTCTGAGTCAAAA+TGG 0.248832 5_3:-10274313 Msa0797910:CDS
TCCAATATTGTACAAGAAAA+AGG 0.257939 5_3:+10272827 None:intergenic
GGATGAGGTGATCCTTTAAT+AGG 0.293488 5_3:+10273810 None:intergenic
CTCAAAGGAGATTGATTACT+AGG 0.299186 5_3:-10272859 Msa0797910:three_prime_UTR
CATATTATTGTGCTTTATCT+TGG 0.301193 5_3:-10272553 Msa0797910:three_prime_UTR
AAGTGTAGCTCTGAGAATTT+TGG 0.302152 5_3:-10274073 Msa0797910:CDS
TTCCAACTGATGAATATTCT+TGG 0.308006 5_3:-10273851 Msa0797910:CDS
TCTCAGGTTTCTTCTTCGTT+TGG 0.320070 5_3:-10274130 Msa0797910:CDS
GCAGTTGAAGAAGCTGCTTC+TGG 0.326064 5_3:-10274463 Msa0797910:CDS
TATGGTCAGAAACCTATTAA+AGG 0.332994 5_3:-10273822 Msa0797910:CDS
ACATCATTGTTGGGGATTAG+AGG 0.351620 5_3:+10274187 None:intergenic
ATAAAGCAATTAAATTAAAT+AGG 0.353460 5_3:+10272657 None:intergenic
AAAAGTGGAGATGGTGGATT+TGG 0.362015 5_3:-10272724 Msa0797910:three_prime_UTR
CTTCTTCAACTGCATTCTCT+TGG 0.364489 5_3:+10274473 None:intergenic
TTATCAATAACATCATTGTT+GGG 0.369596 5_3:+10274178 None:intergenic
CCACAATCACTCCCTCTCTA+TGG 0.372520 5_3:-10273042 Msa0797910:CDS
CTTATCAATAACATCATTGT+TGG 0.377214 5_3:+10274177 None:intergenic
GAATATTCTTGGAGGAAGTA+TGG 0.385581 5_3:-10273840 Msa0797910:CDS
TTATACGTAGTGCTTTATCT+TGG 0.387237 5_3:-10272638 Msa0797910:three_prime_UTR
TGAGGTTGAAAAGAGTGGTT+AGG 0.422019 5_3:-10273905 Msa0797910:CDS
AAAACATGTAGAAAGAGCTT+TGG 0.435280 5_3:-10273102 Msa0797910:CDS
TCTCGATGGATTCACGTTGT+TGG 0.437155 5_3:+10272771 None:intergenic
TAAGTAACTACCAACATAGA+TGG 0.441381 5_3:+10273074 None:intergenic
AGTCAAAATGGAACAAGAAC+TGG 0.459813 5_3:-10274301 Msa0797910:CDS
CTCCAAGAATATTCATCAGT+TGG 0.460948 5_3:+10273849 None:intergenic
TATGGCCGTTGAACTAATGA+TGG 0.484741 5_3:-10274527 Msa0797910:CDS
ATAAATAATACTAGTCTCGA+TGG 0.504369 5_3:+10272757 None:intergenic
GAATACAAACCCTAATTCCA+TGG 0.508067 5_3:-10274383 Msa0797910:CDS
TGAATTCAATTCAGTTCAAG+AGG 0.508819 5_3:+10272992 None:intergenic
AAGAATAGAAAGAATTGAGT+GGG 0.512466 5_3:-10272697 Msa0797910:three_prime_UTR
ATGTTGGTAGTTACTTATGA+AGG 0.517787 5_3:-10273068 Msa0797910:CDS
CTAGTTTCAGAAGTGGAAGT+AGG 0.526285 5_3:+10274244 None:intergenic
GAAAAGAGTGGTTAGGGTAG+CGG 0.527347 5_3:-10273898 Msa0797910:CDS
TCAGAAGTGGAAGTAGGAGA+AGG 0.528280 5_3:+10274250 None:intergenic
GAGGTTGAAAAGAGTGGTTA+GGG 0.534113 5_3:-10273904 Msa0797910:CDS
TATCAATAACATCATTGTTG+GGG 0.534993 5_3:+10274179 None:intergenic
CAACTGATGAATATTCTTGG+AGG 0.535323 5_3:-10273848 Msa0797910:CDS
GTGTCCCATCATTAGTTCAA+CGG 0.535706 5_3:+10274522 None:intergenic
AGGAGATTGATTACTAGGGT+TGG 0.539661 5_3:-10272854 Msa0797910:three_prime_UTR
CCATAGAGAGGGAGTGATTG+TGG 0.545149 5_3:+10273042 None:intergenic
ACTGTCATTGTTCAAAGAAG+AGG 0.551193 5_3:-10274021 Msa0797910:intron
TTTGGATGATCCATCTATGT+TGG 0.552858 5_3:-10273084 Msa0797910:CDS
CAATTGCATCTTCTTACTCA+AGG 0.557530 5_3:-10272900 Msa0797910:three_prime_UTR
AGCGGCAATAAGCTTGAAGA+TGG 0.558574 5_3:-10273880 Msa0797910:CDS
TGAAACAGCAACATCAGCTA+CGG 0.565102 5_3:+10274351 None:intergenic
AAGAGAACGAGAAAAGCTAA+AGG 0.578113 5_3:+10272802 None:intergenic
ATAATCAAGTACCTTGGATG+AGG 0.580943 5_3:+10273795 None:intergenic
GTGGAAGTAGGAGAAGGTAA+AGG 0.586033 5_3:+10274256 None:intergenic
TCAAAGGAGATTGATTACTA+GGG 0.586328 5_3:-10272858 Msa0797910:three_prime_UTR
GTAGACTCTAGTTTCAGAAG+TGG 0.596356 5_3:+10274237 None:intergenic
TTAAAGGATCACCTCATCCA+AGG 0.601665 5_3:-10273806 Msa0797910:intron
ATTAGCTTCAACCATAGAGA+GGG 0.604376 5_3:+10273031 None:intergenic
AGAGGAGGAATCTGCTGCAA+CGG 0.605875 5_3:+10274205 None:intergenic
TATTAGCTTCAACCATAGAG+AGG 0.607872 5_3:+10273030 None:intergenic
AAAGAATAGAAAGAATTGAG+TGG 0.616462 5_3:-10272698 Msa0797910:three_prime_UTR
TCATTGTTGGGGATTAGAGG+AGG 0.627905 5_3:+10274190 None:intergenic
ATGGCCGTTGAACTAATGAT+GGG 0.636491 5_3:-10274526 Msa0797910:CDS
TCTGCTGCAACGGAGTAGCA+TGG 0.640412 5_3:+10274215 None:intergenic
AGAATAGAAAGAATTGAGTG+GGG 0.643884 5_3:-10272696 Msa0797910:three_prime_UTR
AAACGAAGAAGAAACCTGAG+AGG 0.690900 5_3:+10274132 None:intergenic
TCTTCTTTGAACAATGACAG+TGG 0.712784 5_3:+10274023 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAAATTACTTAAGTTTTA+AGG + chr5_3:10273541-10273560 None:intergenic 10.0%
!!! TTAGTGATTTTTTTAATTAT+TGG - chr5_3:10273675-10273694 Msa0797910:intron 10.0%
!! ATAAAGCAATTAAATTAAAT+AGG + chr5_3:10274339-10274358 None:intergenic 10.0%
!!! AATAAATTACTTAAGTTTTA+AGG + chr5_3:10273541-10273560 None:intergenic 10.0%
!!! TTAGTGATTTTTTTAATTAT+TGG - chr5_3:10273675-10273694 Msa0797910:intron 10.0%
!! ATAAAGCAATTAAATTAAAT+AGG + chr5_3:10274339-10274358 None:intergenic 10.0%
!! ACTCAATTAAAATATTACTA+AGG + chr5_3:10273237-10273256 None:intergenic 15.0%
!!! AACACATATAAGAAATTTTT+TGG + chr5_3:10273278-10273297 None:intergenic 15.0%
!!! TTTATTTTCAAAGAAAAAAG+TGG - chr5_3:10274254-10274273 Msa0797910:CDS 15.0%
!! ACTCAATTAAAATATTACTA+AGG + chr5_3:10273237-10273256 None:intergenic 15.0%
!!! AACACATATAAGAAATTTTT+TGG + chr5_3:10273278-10273297 None:intergenic 15.0%
!!! TTTATTTTCAAAGAAAAAAG+TGG - chr5_3:10274254-10274273 Msa0797910:CDS 15.0%
!! TTATCAATAACATCATTGTT+GGG + chr5_3:10272818-10272837 None:intergenic 20.0%
!! TTAATTACTGTAGAAAAATG+AGG - chr5_3:10273070-10273089 Msa0797910:CDS 20.0%
!! GGAAATGATTCAAAATTAAA+CGG + chr5_3:10273320-10273339 None:intergenic 20.0%
!!! TTCAAACAATTTTCAAATAC+TGG + chr5_3:10273394-10273413 None:intergenic 20.0%
!! ATCTTAAAAGTAGAAGTTTA+TGG + chr5_3:10273627-10273646 None:intergenic 20.0%
!!! TTTTTTTAATTATTGGTCCA+CGG - chr5_3:10273682-10273701 Msa0797910:intron 20.0%
!! ATTTAGTACTCAATCTTAAT+AGG + chr5_3:10273715-10273734 None:intergenic 20.0%
!! TTATCAATAACATCATTGTT+GGG + chr5_3:10272818-10272837 None:intergenic 20.0%
!! TTAATTACTGTAGAAAAATG+AGG - chr5_3:10273070-10273089 Msa0797910:CDS 20.0%
!! GGAAATGATTCAAAATTAAA+CGG + chr5_3:10273320-10273339 None:intergenic 20.0%
!!! TTCAAACAATTTTCAAATAC+TGG + chr5_3:10273394-10273413 None:intergenic 20.0%
!! ATCTTAAAAGTAGAAGTTTA+TGG + chr5_3:10273627-10273646 None:intergenic 20.0%
!!! TTTTTTTAATTATTGGTCCA+CGG - chr5_3:10273682-10273701 Msa0797910:intron 20.0%
!! ATTTAGTACTCAATCTTAAT+AGG + chr5_3:10273715-10273734 None:intergenic 20.0%
!! TTTTATAGTCCATGGAATTA+GGG + chr5_3:10272622-10272641 None:intergenic 25.0%
! TATCAATAACATCATTGTTG+GGG + chr5_3:10272817-10272836 None:intergenic 25.0%
! CTTATCAATAACATCATTGT+TGG + chr5_3:10272819-10272838 None:intergenic 25.0%
!!! AATTTTGGTAATGAAAAGTG+TGG - chr5_3:10272935-10272954 Msa0797910:three_prime_UTR 25.0%
! ATACTAATAATCAAGTACCT+TGG + chr5_3:10273207-10273226 None:intergenic 25.0%
! ACTATGTGCATAAAGAAAAA+GGG + chr5_3:10273341-10273360 None:intergenic 25.0%
! TGGTAAATTACAAATCAAGA+TGG + chr5_3:10273367-10273386 None:intergenic 25.0%
!!! AATTTTCAAATACTGGCTTT+TGG + chr5_3:10273387-10273406 None:intergenic 25.0%
! CAAGTTGTTATAACAGTTAA+TGG + chr5_3:10274071-10274090 None:intergenic 25.0%
!! TCCTTTTTCTTGTACAATAT+TGG - chr5_3:10274165-10274184 Msa0797910:CDS 25.0%
! TCCAATATTGTACAAGAAAA+AGG + chr5_3:10274169-10274188 None:intergenic 25.0%
!! ATAAATAATACTAGTCTCGA+TGG + chr5_3:10274239-10274258 None:intergenic 25.0%
! AAAGAATAGAAAGAATTGAG+TGG - chr5_3:10274295-10274314 Msa0797910:CDS 25.0%
! AAGAATAGAAAGAATTGAGT+GGG - chr5_3:10274296-10274315 Msa0797910:CDS 25.0%
! CATATTATTGTGCTTTATCT+TGG - chr5_3:10274440-10274459 Msa0797910:CDS 25.0%
!! TTTTATAGTCCATGGAATTA+GGG + chr5_3:10272622-10272641 None:intergenic 25.0%
! TATCAATAACATCATTGTTG+GGG + chr5_3:10272817-10272836 None:intergenic 25.0%
! CTTATCAATAACATCATTGT+TGG + chr5_3:10272819-10272838 None:intergenic 25.0%
!!! AATTTTGGTAATGAAAAGTG+TGG - chr5_3:10272935-10272954 Msa0797910:three_prime_UTR 25.0%
! ATACTAATAATCAAGTACCT+TGG + chr5_3:10273207-10273226 None:intergenic 25.0%
! ACTATGTGCATAAAGAAAAA+GGG + chr5_3:10273341-10273360 None:intergenic 25.0%
! TGGTAAATTACAAATCAAGA+TGG + chr5_3:10273367-10273386 None:intergenic 25.0%
!!! AATTTTCAAATACTGGCTTT+TGG + chr5_3:10273387-10273406 None:intergenic 25.0%
! CAAGTTGTTATAACAGTTAA+TGG + chr5_3:10274071-10274090 None:intergenic 25.0%
!! TCCTTTTTCTTGTACAATAT+TGG - chr5_3:10274165-10274184 Msa0797910:CDS 25.0%
! TCCAATATTGTACAAGAAAA+AGG + chr5_3:10274169-10274188 None:intergenic 25.0%
!! ATAAATAATACTAGTCTCGA+TGG + chr5_3:10274239-10274258 None:intergenic 25.0%
! AAAGAATAGAAAGAATTGAG+TGG - chr5_3:10274295-10274314 Msa0797910:CDS 25.0%
! AAGAATAGAAAGAATTGAGT+GGG - chr5_3:10274296-10274315 Msa0797910:CDS 25.0%
! CATATTATTGTGCTTTATCT+TGG - chr5_3:10274440-10274459 Msa0797910:CDS 25.0%
! GTTTTATAGTCCATGGAATT+AGG + chr5_3:10272623-10272642 None:intergenic 30.0%
ATTTCACTTCTGAGTCAAAA+TGG - chr5_3:10272680-10272699 Msa0797910:three_prime_UTR 30.0%
! TGATTTTTCTTATTCCTCTC+AGG - chr5_3:10272847-10272866 Msa0797910:three_prime_UTR 30.0%
AAAAATGAGGTTGAAAAGAG+TGG - chr5_3:10273083-10273102 Msa0797910:CDS 30.0%
TTCCAACTGATGAATATTCT+TGG - chr5_3:10273142-10273161 Msa0797910:CDS 30.0%
TATGGTCAGAAACCTATTAA+AGG - chr5_3:10273171-10273190 Msa0797910:intron 30.0%
TTGAGTTATCACTTACTGTA+AGG - chr5_3:10273251-10273270 Msa0797910:intron 30.0%
CACTATGTGCATAAAGAAAA+AGG + chr5_3:10273342-10273361 None:intergenic 30.0%
! CTTTTTCTTTATGCACATAG+TGG - chr5_3:10273340-10273359 Msa0797910:intron 30.0%
TTGTGTTTGTCGTTAGTATA+AGG + chr5_3:10273467-10273486 None:intergenic 30.0%
TAAGATACGCAAATAACGTT+AGG - chr5_3:10273641-10273660 Msa0797910:intron 30.0%
TAGTACTCAATCTTAATAGG+TGG + chr5_3:10273712-10273731 None:intergenic 30.0%
AAAACATGTAGAAAGAGCTT+TGG - chr5_3:10273891-10273910 Msa0797910:CDS 30.0%
TAAGTAACTACCAACATAGA+TGG + chr5_3:10273922-10273941 None:intergenic 30.0%
!! ATGTTGGTAGTTACTTATGA+AGG - chr5_3:10273925-10273944 Msa0797910:intron 30.0%
TGAATTCAATTCAGTTCAAG+AGG + chr5_3:10274004-10274023 None:intergenic 30.0%
TCAAAGGAGATTGATTACTA+GGG - chr5_3:10274135-10274154 Msa0797910:CDS 30.0%
TTCAAAGAAAAAAGTGGAGA+TGG - chr5_3:10274260-10274279 Msa0797910:CDS 30.0%
AGAATAGAAAGAATTGAGTG+GGG - chr5_3:10274297-10274316 Msa0797910:CDS 30.0%
TTATACGTAGTGCTTTATCT+TGG - chr5_3:10274355-10274374 Msa0797910:CDS 30.0%
! GTTTTATAGTCCATGGAATT+AGG + chr5_3:10272623-10272642 None:intergenic 30.0%
ATTTCACTTCTGAGTCAAAA+TGG - chr5_3:10272680-10272699 Msa0797910:three_prime_UTR 30.0%
! TGATTTTTCTTATTCCTCTC+AGG - chr5_3:10272847-10272866 Msa0797910:three_prime_UTR 30.0%
AAAAATGAGGTTGAAAAGAG+TGG - chr5_3:10273083-10273102 Msa0797910:CDS 30.0%
TTCCAACTGATGAATATTCT+TGG - chr5_3:10273142-10273161 Msa0797910:CDS 30.0%
TATGGTCAGAAACCTATTAA+AGG - chr5_3:10273171-10273190 Msa0797910:intron 30.0%
TTGAGTTATCACTTACTGTA+AGG - chr5_3:10273251-10273270 Msa0797910:intron 30.0%
CACTATGTGCATAAAGAAAA+AGG + chr5_3:10273342-10273361 None:intergenic 30.0%
! CTTTTTCTTTATGCACATAG+TGG - chr5_3:10273340-10273359 Msa0797910:intron 30.0%
TTGTGTTTGTCGTTAGTATA+AGG + chr5_3:10273467-10273486 None:intergenic 30.0%
TAAGATACGCAAATAACGTT+AGG - chr5_3:10273641-10273660 Msa0797910:intron 30.0%
TAGTACTCAATCTTAATAGG+TGG + chr5_3:10273712-10273731 None:intergenic 30.0%
AAAACATGTAGAAAGAGCTT+TGG - chr5_3:10273891-10273910 Msa0797910:CDS 30.0%
TAAGTAACTACCAACATAGA+TGG + chr5_3:10273922-10273941 None:intergenic 30.0%
!! ATGTTGGTAGTTACTTATGA+AGG - chr5_3:10273925-10273944 Msa0797910:intron 30.0%
TGAATTCAATTCAGTTCAAG+AGG + chr5_3:10274004-10274023 None:intergenic 30.0%
TCAAAGGAGATTGATTACTA+GGG - chr5_3:10274135-10274154 Msa0797910:CDS 30.0%
TTCAAAGAAAAAAGTGGAGA+TGG - chr5_3:10274260-10274279 Msa0797910:CDS 30.0%
AGAATAGAAAGAATTGAGTG+GGG - chr5_3:10274297-10274316 Msa0797910:CDS 30.0%
TTATACGTAGTGCTTTATCT+TGG - chr5_3:10274355-10274374 Msa0797910:CDS 30.0%
GAATACAAACCCTAATTCCA+TGG - chr5_3:10272610-10272629 Msa0797910:three_prime_UTR 35.0%
AGTCAAAATGGAACAAGAAC+TGG - chr5_3:10272692-10272711 Msa0797910:three_prime_UTR 35.0%
!!! AAGTGTAGCTCTGAGAATTT+TGG - chr5_3:10272920-10272939 Msa0797910:three_prime_UTR 35.0%
TCTTCTTTGAACAATGACAG+TGG + chr5_3:10272973-10272992 None:intergenic 35.0%
ACTGTCATTGTTCAAAGAAG+AGG - chr5_3:10272972-10272991 Msa0797910:three_prime_UTR 35.0%
CTCCAAGAATATTCATCAGT+TGG + chr5_3:10273147-10273166 None:intergenic 35.0%
CAACTGATGAATATTCTTGG+AGG - chr5_3:10273145-10273164 Msa0797910:CDS 35.0%
GAATATTCTTGGAGGAAGTA+TGG - chr5_3:10273153-10273172 Msa0797910:intron 35.0%
ATAATCAAGTACCTTGGATG+AGG + chr5_3:10273201-10273220 None:intergenic 35.0%
CTCGAAGAAAATGTCTATTG+TGG + chr5_3:10273424-10273443 None:intergenic 35.0%
ATCCAAGACAATGACCTAAT+TGG + chr5_3:10273588-10273607 None:intergenic 35.0%
!! TTTTAATTATTGGTCCACGG+TGG - chr5_3:10273685-10273704 Msa0797910:intron 35.0%
ACGATGATTATTACTACTGC+AGG - chr5_3:10273827-10273846 Msa0797910:CDS 35.0%
CGATGATTATTACTACTGCA+GGG - chr5_3:10273828-10273847 Msa0797910:CDS 35.0%
GATGATTATTACTACTGCAG+GGG - chr5_3:10273829-10273848 Msa0797910:CDS 35.0%
TTTGGATGATCCATCTATGT+TGG - chr5_3:10273909-10273928 Msa0797910:CDS 35.0%
! ATTAGCTTCAACCATAGAGA+GGG + chr5_3:10273965-10273984 None:intergenic 35.0%
! TATTAGCTTCAACCATAGAG+AGG + chr5_3:10273966-10273985 None:intergenic 35.0%
CAATTGCATCTTCTTACTCA+AGG - chr5_3:10274093-10274112 Msa0797910:CDS 35.0%
TTGAGATGAAAAAGTTGTGC+TGG + chr5_3:10274119-10274138 None:intergenic 35.0%
!!! GCACAACTTTTTCATCTCAA+AGG - chr5_3:10274119-10274138 Msa0797910:CDS 35.0%
CTCAAAGGAGATTGATTACT+AGG - chr5_3:10274134-10274153 Msa0797910:CDS 35.0%
AAGAGAACGAGAAAAGCTAA+AGG + chr5_3:10274194-10274213 None:intergenic 35.0%
AAAGAAAAAAGTGGAGATGG+TGG - chr5_3:10274263-10274282 Msa0797910:CDS 35.0%
GAATACAAACCCTAATTCCA+TGG - chr5_3:10272610-10272629 Msa0797910:three_prime_UTR 35.0%
AGTCAAAATGGAACAAGAAC+TGG - chr5_3:10272692-10272711 Msa0797910:three_prime_UTR 35.0%
!!! AAGTGTAGCTCTGAGAATTT+TGG - chr5_3:10272920-10272939 Msa0797910:three_prime_UTR 35.0%
TCTTCTTTGAACAATGACAG+TGG + chr5_3:10272973-10272992 None:intergenic 35.0%
ACTGTCATTGTTCAAAGAAG+AGG - chr5_3:10272972-10272991 Msa0797910:three_prime_UTR 35.0%
CTCCAAGAATATTCATCAGT+TGG + chr5_3:10273147-10273166 None:intergenic 35.0%
CAACTGATGAATATTCTTGG+AGG - chr5_3:10273145-10273164 Msa0797910:CDS 35.0%
GAATATTCTTGGAGGAAGTA+TGG - chr5_3:10273153-10273172 Msa0797910:intron 35.0%
ATAATCAAGTACCTTGGATG+AGG + chr5_3:10273201-10273220 None:intergenic 35.0%
CTCGAAGAAAATGTCTATTG+TGG + chr5_3:10273424-10273443 None:intergenic 35.0%
ATCCAAGACAATGACCTAAT+TGG + chr5_3:10273588-10273607 None:intergenic 35.0%
!! TTTTAATTATTGGTCCACGG+TGG - chr5_3:10273685-10273704 Msa0797910:intron 35.0%
ACGATGATTATTACTACTGC+AGG - chr5_3:10273827-10273846 Msa0797910:CDS 35.0%
CGATGATTATTACTACTGCA+GGG - chr5_3:10273828-10273847 Msa0797910:CDS 35.0%
GATGATTATTACTACTGCAG+GGG - chr5_3:10273829-10273848 Msa0797910:CDS 35.0%
TTTGGATGATCCATCTATGT+TGG - chr5_3:10273909-10273928 Msa0797910:CDS 35.0%
! ATTAGCTTCAACCATAGAGA+GGG + chr5_3:10273965-10273984 None:intergenic 35.0%
! TATTAGCTTCAACCATAGAG+AGG + chr5_3:10273966-10273985 None:intergenic 35.0%
CAATTGCATCTTCTTACTCA+AGG - chr5_3:10274093-10274112 Msa0797910:CDS 35.0%
TTGAGATGAAAAAGTTGTGC+TGG + chr5_3:10274119-10274138 None:intergenic 35.0%
!!! GCACAACTTTTTCATCTCAA+AGG - chr5_3:10274119-10274138 Msa0797910:CDS 35.0%
CTCAAAGGAGATTGATTACT+AGG - chr5_3:10274134-10274153 Msa0797910:CDS 35.0%
AAGAGAACGAGAAAAGCTAA+AGG + chr5_3:10274194-10274213 None:intergenic 35.0%
AAAGAAAAAAGTGGAGATGG+TGG - chr5_3:10274263-10274282 Msa0797910:CDS 35.0%
ATGGCCGTTGAACTAATGAT+GGG - chr5_3:10272467-10272486 Msa0797910:three_prime_UTR 40.0%
GTGTCCCATCATTAGTTCAA+CGG + chr5_3:10272474-10272493 None:intergenic 40.0%
CTTCTTCAACTGCATTCTCT+TGG + chr5_3:10272523-10272542 None:intergenic 40.0%
!! AGCTACGGTTTTATAGTCCA+TGG + chr5_3:10272630-10272649 None:intergenic 40.0%
TGAAACAGCAACATCAGCTA+CGG + chr5_3:10272645-10272664 None:intergenic 40.0%
CTAGTTTCAGAAGTGGAAGT+AGG + chr5_3:10272752-10272771 None:intergenic 40.0%
! GTAGACTCTAGTTTCAGAAG+TGG + chr5_3:10272759-10272778 None:intergenic 40.0%
ACATCATTGTTGGGGATTAG+AGG + chr5_3:10272809-10272828 None:intergenic 40.0%
AAACGAAGAAGAAACCTGAG+AGG + chr5_3:10272864-10272883 None:intergenic 40.0%
TCTCAGGTTTCTTCTTCGTT+TGG - chr5_3:10272863-10272882 Msa0797910:three_prime_UTR 40.0%
TGAGGTTGAAAAGAGTGGTT+AGG - chr5_3:10273088-10273107 Msa0797910:CDS 40.0%
GAGGTTGAAAAGAGTGGTTA+GGG - chr5_3:10273089-10273108 Msa0797910:CDS 40.0%
GGATGAGGTGATCCTTTAAT+AGG + chr5_3:10273186-10273205 None:intergenic 40.0%
TTAAAGGATCACCTCATCCA+AGG - chr5_3:10273187-10273206 Msa0797910:intron 40.0%
GACAATGACCTAATTGGTGT+CGG + chr5_3:10273582-10273601 None:intergenic 40.0%
CACCAATTAGGTCATTGTCT+TGG - chr5_3:10273583-10273602 Msa0797910:intron 40.0%
TACAAGTGCAGCAGTGTTAA+AGG - chr5_3:10273856-10273875 Msa0797910:CDS 40.0%
! CTTTCTACATGTTTTCGTGC+TGG + chr5_3:10273886-10273905 None:intergenic 40.0%
AGGAGATTGATTACTAGGGT+TGG - chr5_3:10274139-10274158 Msa0797910:CDS 40.0%
!! AAAAGTGGAGATGGTGGATT+TGG - chr5_3:10274269-10274288 Msa0797910:CDS 40.0%
ATGGCCGTTGAACTAATGAT+GGG - chr5_3:10272467-10272486 Msa0797910:three_prime_UTR 40.0%
GTGTCCCATCATTAGTTCAA+CGG + chr5_3:10272474-10272493 None:intergenic 40.0%
CTTCTTCAACTGCATTCTCT+TGG + chr5_3:10272523-10272542 None:intergenic 40.0%
!! AGCTACGGTTTTATAGTCCA+TGG + chr5_3:10272630-10272649 None:intergenic 40.0%
TGAAACAGCAACATCAGCTA+CGG + chr5_3:10272645-10272664 None:intergenic 40.0%
CTAGTTTCAGAAGTGGAAGT+AGG + chr5_3:10272752-10272771 None:intergenic 40.0%
! GTAGACTCTAGTTTCAGAAG+TGG + chr5_3:10272759-10272778 None:intergenic 40.0%
ACATCATTGTTGGGGATTAG+AGG + chr5_3:10272809-10272828 None:intergenic 40.0%
AAACGAAGAAGAAACCTGAG+AGG + chr5_3:10272864-10272883 None:intergenic 40.0%
TCTCAGGTTTCTTCTTCGTT+TGG - chr5_3:10272863-10272882 Msa0797910:three_prime_UTR 40.0%
TGAGGTTGAAAAGAGTGGTT+AGG - chr5_3:10273088-10273107 Msa0797910:CDS 40.0%
GAGGTTGAAAAGAGTGGTTA+GGG - chr5_3:10273089-10273108 Msa0797910:CDS 40.0%
GGATGAGGTGATCCTTTAAT+AGG + chr5_3:10273186-10273205 None:intergenic 40.0%
TTAAAGGATCACCTCATCCA+AGG - chr5_3:10273187-10273206 Msa0797910:intron 40.0%
GACAATGACCTAATTGGTGT+CGG + chr5_3:10273582-10273601 None:intergenic 40.0%
CACCAATTAGGTCATTGTCT+TGG - chr5_3:10273583-10273602 Msa0797910:intron 40.0%
TACAAGTGCAGCAGTGTTAA+AGG - chr5_3:10273856-10273875 Msa0797910:CDS 40.0%
! CTTTCTACATGTTTTCGTGC+TGG + chr5_3:10273886-10273905 None:intergenic 40.0%
AGGAGATTGATTACTAGGGT+TGG - chr5_3:10274139-10274158 Msa0797910:CDS 40.0%
!! AAAAGTGGAGATGGTGGATT+TGG - chr5_3:10274269-10274288 Msa0797910:CDS 40.0%
GTGGAAGTAGGAGAAGGTAA+AGG + chr5_3:10272740-10272759 None:intergenic 45.0%
TCAGAAGTGGAAGTAGGAGA+AGG + chr5_3:10272746-10272765 None:intergenic 45.0%
TCATTGTTGGGGATTAGAGG+AGG + chr5_3:10272806-10272825 None:intergenic 45.0%
GAAAAGAGTGGTTAGGGTAG+CGG - chr5_3:10273095-10273114 Msa0797910:CDS 45.0%
AGCGGCAATAAGCTTGAAGA+TGG - chr5_3:10273113-10273132 Msa0797910:CDS 45.0%
! TCTCGATGGATTCACGTTGT+TGG + chr5_3:10274225-10274244 None:intergenic 45.0%
GTGGAAGTAGGAGAAGGTAA+AGG + chr5_3:10272740-10272759 None:intergenic 45.0%
TCAGAAGTGGAAGTAGGAGA+AGG + chr5_3:10272746-10272765 None:intergenic 45.0%
TCATTGTTGGGGATTAGAGG+AGG + chr5_3:10272806-10272825 None:intergenic 45.0%
GAAAAGAGTGGTTAGGGTAG+CGG - chr5_3:10273095-10273114 Msa0797910:CDS 45.0%
AGCGGCAATAAGCTTGAAGA+TGG - chr5_3:10273113-10273132 Msa0797910:CDS 45.0%
! TCTCGATGGATTCACGTTGT+TGG + chr5_3:10274225-10274244 None:intergenic 45.0%
!!! GTAATTTATTTTTATTATTT+TGG - chr5_3:10273551-10273570 Msa0797910:intron 5.0%
!!! GTAATTTATTTTTATTATTT+TGG - chr5_3:10273551-10273570 Msa0797910:intron 5.0%
GCAGTTGAAGAAGCTGCTTC+TGG - chr5_3:10272530-10272549 Msa0797910:three_prime_UTR 50.0%
AGAGGAGGAATCTGCTGCAA+CGG + chr5_3:10272791-10272810 None:intergenic 50.0%
TGGTCGAACCGACACCAATT+AGG - chr5_3:10273571-10273590 Msa0797910:intron 50.0%
TCTTAATAGGTGGTCCACCG+TGG + chr5_3:10273702-10273721 None:intergenic 50.0%
CCATAGAGAGGGAGTGATTG+TGG + chr5_3:10273954-10273973 None:intergenic 50.0%
CCACAATCACTCCCTCTCTA+TGG - chr5_3:10273951-10273970 Msa0797910:intron 50.0%
GCAGTTGAAGAAGCTGCTTC+TGG - chr5_3:10272530-10272549 Msa0797910:three_prime_UTR 50.0%
AGAGGAGGAATCTGCTGCAA+CGG + chr5_3:10272791-10272810 None:intergenic 50.0%
TGGTCGAACCGACACCAATT+AGG - chr5_3:10273571-10273590 Msa0797910:intron 50.0%
TCTTAATAGGTGGTCCACCG+TGG + chr5_3:10273702-10273721 None:intergenic 50.0%
CCATAGAGAGGGAGTGATTG+TGG + chr5_3:10273954-10273973 None:intergenic 50.0%
CCACAATCACTCCCTCTCTA+TGG - chr5_3:10273951-10273970 Msa0797910:intron 50.0%
TCTGCTGCAACGGAGTAGCA+TGG + chr5_3:10272781-10272800 None:intergenic 55.0%
TCTGCTGCAACGGAGTAGCA+TGG + chr5_3:10272781-10272800 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 10272467 10274548 10272467 ID=Msa0797910;Name=Msa0797910
chr5_3 mRNA 10272467 10274548 10272467 ID=Msa0797910-mRNA-1;Parent=Msa0797910;Name=Msa0797910-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0.66|1|1|1|3|540|270
chr5_3 exon 10272467 10273166 10272467 ID=Msa0797910-mRNA-1:exon:4342;Parent=Msa0797910-mRNA-1
chr5_3 exon 10273807 10273932 10273807 ID=Msa0797910-mRNA-1:exon:4341;Parent=Msa0797910-mRNA-1
chr5_3 exon 10274022 10274548 10274022 ID=Msa0797910-mRNA-1:exon:4340;Parent=Msa0797910-mRNA-1
chr5_3 CDS 10274022 10274548 10274022 ID=Msa0797910-mRNA-1:cds;Parent=Msa0797910-mRNA-1
chr5_3 CDS 10273807 10273932 10273807 ID=Msa0797910-mRNA-1:cds;Parent=Msa0797910-mRNA-1
chr5_3 CDS 10273007 10273166 10273007 ID=Msa0797910-mRNA-1:cds;Parent=Msa0797910-mRNA-1
chr5_3 three_prime_UTR 10272467 10273006 10272467 ID=Msa0797910-mRNA-1:three_prime_utr;Parent=Msa0797910-mRNA-1
Gene Sequence

>Msa0797910

ATGGCCGTTGAACTAATGATGGGACACAAAAACAACAATTTAACAAACAAATTCCAAGAGAATGCAGTTGAAGAAGCTGCTTCTGGTTTACAAAGCATAGAAAAACTCATTAAATTACTATCATCATCACAAACATGTTCTTCGAATACAAACCCTAATTCCATGGACTATAAAACCGTAGCTGATGTTGCTGTTTCAAAGTTTAAGAATGTTATTTCACTTCTGAGTCAAAATGGAACAAGAACTGGTCATGCACGTTTCAGAAGAGCACCTTTACCTTCTCCTACTTCCACTTCTGAAACTAGAGTCTACCATGCTACTCCGTTGCAGCAGATTCCTCCTCTAATCCCCAACAATGATGTTATTGATAAGAATATCATTGATTTTTCTTATTCCTCTCAGGTTTCTTCTTCGTTTGGAAAGTCTTGTGTTTCTTCATGTTCGTTGAAGAGAAAGTGTAGCTCTGAGAATTTTGGTAATGAAAAGTGTGGTAGTTCATCTAGCCACTGTCATTGTTCAAAGAAGAGAAAAATGAGGTTGAAAAGAGTGGTTAGGGTAGCGGCAATAAGCTTGAAGATGGCTGATATTCCAACTGATGAATATTCTTGGAGGAAGTATGGTCAGAAACCTATTAAAGGATCACCTCATCCAAGGGGTTATTACAAGTGCAGCAGTGTTAAAGGTTGTCCAGCACGAAAACATGTAGAAAGAGCTTTGGATGATCCATCTATGTTGGTAGTTACTTATGAAGGCGACCACAATCACTCCCTCTCTATGGTTGAAGCTAATAATCTCATCTTAGAATCCTCTTGA
Protein sequence

>Msa0797910

MAVELMMGHKNNNLTNKFQENAVEEAASGLQSIEKLIKLLSSSQTCSSNTNPNSMDYKTVADVAVSKFKNVISLLSQNGTRTGHARFRRAPLPSPTSTSETRVYHATPLQQIPPLIPNNDVIDKNIIDFSYSSQVSSSFGKSCVSSCSLKRKCSSENFGNEKCGSSSSHCHCSKKRKMRLKRVVRVAAISLKMADIPTDEYSWRKYGQKPIKGSPHPRGYYKCSSVKGCPARKHVERALDDPSMLVVTYEGDHNHSLSMVEANNLILESS*