AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1463520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1463520 MtrunA17_Chr5g0401821 94.834 271 13 1 1 270 1 271 1.01e-179 495
Msa1463520 MtrunA17_Chr4g0053281 57.059 340 74 9 1 270 1 338 3.73e-105 308
Msa1463520 MtrunA17_Chr4g0071521 44.771 306 104 9 19 266 15 313 1.51e-67 212
Msa1463520 MtrunA17_Chr1g0147881 58.273 139 51 2 138 270 203 340 6.04e-52 172
Msa1463520 MtrunA17_Chr1g0184691 72.897 107 29 0 150 256 245 351 5.55e-44 152
Msa1463520 MtrunA17_Chr3g0139021 54.348 138 62 1 127 264 244 380 3.78e-43 151
Msa1463520 MtrunA17_Chr7g0228941 67.532 77 25 0 179 255 33 109 8.93e-35 121
Msa1463520 MtrunA17_Chr2g0284321 56.977 86 36 1 173 257 9 94 1.14e-28 108
Msa1463520 MtrunA17_Chr8g0379461 52.688 93 37 1 174 259 45 137 1.89e-28 108
Msa1463520 MtrunA17_Chr2g0319961 51.961 102 33 2 174 264 50 146 2.17e-28 109
Msa1463520 MtrunA17_Chr7g0270051 56.180 89 35 1 171 255 22 110 3.01e-28 108
Msa1463520 MtrunA17_Chr2g0293481 56.842 95 36 2 166 255 230 324 1.27e-27 110
Msa1463520 MtrunA17_Chr8g0348311 60.241 83 28 1 173 255 135 212 2.08e-27 108
Msa1463520 MtrunA17_Chr7g0248691 60.241 83 28 1 173 255 134 211 3.05e-27 107
Msa1463520 MtrunA17_Chr1g0202461 57.647 85 30 2 173 256 240 319 2.27e-24 100
Msa1463520 MtrunA17_Chr3g0101131 49.495 99 41 2 173 263 382 479 5.37e-24 100
Msa1463520 MtrunA17_Chr5g0445311 48.958 96 37 2 173 257 328 422 2.05e-23 99.4
Msa1463520 MtrunA17_Chr2g0289181 56.061 66 29 0 191 256 7 72 3.53e-23 94.7
Msa1463520 MtrunA17_Chr7g0270191 49.398 83 41 1 173 255 120 201 1.47e-21 91.7
Msa1463520 MtrunA17_Chr7g0263531 49.333 75 37 1 194 268 357 430 2.60e-21 92.8
Msa1463520 MtrunA17_Chr7g0263531 51.429 70 31 3 187 255 177 244 7.03e-15 73.9
Msa1463520 MtrunA17_Chr7g0218081 61.905 63 23 1 195 257 407 468 1.13e-20 91.3
Msa1463520 MtrunA17_Chr7g0218081 53.226 62 26 3 195 255 224 283 1.64e-13 70.1
Msa1463520 MtrunA17_Chr4g0004911 40.909 132 67 4 128 259 276 396 1.19e-20 90.9
Msa1463520 MtrunA17_Chr4g0004911 52.632 57 26 1 199 255 185 240 7.56e-14 70.9
Msa1463520 MtrunA17_Chr8g0387501 63.158 57 21 0 199 255 130 186 1.66e-20 88.2
Msa1463520 MtrunA17_Chr4g0051181 33.908 174 88 5 101 257 139 302 2.54e-20 90.1
Msa1463520 MtrunA17_Chr5g0418191 55.072 69 30 1 195 263 317 384 2.67e-20 89.7
Msa1463520 MtrunA17_Chr5g0418191 46.575 73 37 2 185 257 138 208 3.14e-13 68.9
Msa1463520 MtrunA17_Chr3g0106491 51.899 79 37 1 179 257 346 423 4.05e-20 89.4
Msa1463520 MtrunA17_Chr3g0106491 54.386 57 24 2 199 255 199 253 1.49e-13 70.1
Msa1463520 MtrunA17_Chr3g0079691 47.368 95 39 2 173 257 460 553 8.77e-20 89.0
Msa1463520 MtrunA17_Chr3g0079691 50.877 57 26 2 199 255 281 335 1.65e-11 64.3
Msa1463520 MtrunA17_Chr4g0042831 52.000 75 35 1 195 269 275 348 1.02e-19 87.8
Msa1463520 MtrunA17_Chr5g0432161 51.899 79 37 1 179 257 402 479 1.29e-19 88.2
Msa1463520 MtrunA17_Chr5g0432161 50.877 57 26 2 199 255 245 299 1.49e-12 67.4
Msa1463520 MtrunA17_Chr7g0249311 45.714 105 45 3 173 266 356 459 1.32e-19 88.2
Msa1463520 MtrunA17_Chr7g0249311 50.000 58 27 2 199 256 180 235 2.67e-11 63.5
Msa1463520 MtrunA17_Chr4g0001361 46.591 88 43 2 172 255 132 219 1.51e-19 86.3
Msa1463520 MtrunA17_Chr3g0136961 55.172 58 26 0 199 256 139 196 1.70e-19 85.9
Msa1463520 MtrunA17_Chr2g0288871 50.000 76 38 0 182 257 289 364 1.85e-19 87.8
Msa1463520 MtrunA17_Chr1g0150801 52.113 71 33 1 185 255 89 158 2.25e-19 82.8
Msa1463520 MtrunA17_Chr1g0194481 45.783 83 44 1 173 255 133 214 3.16e-19 85.5
Msa1463520 MtrunA17_Chr3g0099641 50.685 73 36 0 185 257 238 310 3.58e-19 86.7
Msa1463520 MtrunA17_Chr1g0150281 52.632 57 27 0 199 255 141 197 4.32e-19 84.7
Msa1463520 MtrunA17_Chr7g0249301 51.899 79 37 1 179 257 273 350 4.41e-19 85.9
Msa1463520 MtrunA17_Chr7g0249301 51.724 58 26 2 199 256 63 118 7.32e-12 64.7
Msa1463520 MtrunA17_Chr4g0060271 55.224 67 28 1 195 259 250 316 7.09e-19 85.9
Msa1463520 MtrunA17_Chr4g0074001 47.126 87 41 2 169 255 334 415 7.45e-19 85.9
Msa1463520 MtrunA17_Chr2g0333851 55.000 60 27 0 196 255 167 226 8.37e-19 84.3
Msa1463520 MtrunA17_Chr7g0243891 40.458 131 63 4 128 257 316 432 8.39e-19 85.9
Msa1463520 MtrunA17_Chr7g0243891 52.632 57 25 2 199 255 217 271 3.94e-12 65.9
Msa1463520 MtrunA17_Chr7g0216891 54.412 68 29 1 195 260 214 281 9.26e-19 85.9
Msa1463520 MtrunA17_Chr7g0270831 48.649 74 38 0 184 257 202 275 9.46e-19 85.1
Msa1463520 MtrunA17_Chr4g0051881 47.945 73 37 1 185 257 165 236 1.23e-18 84.0
Msa1463520 MtrunA17_Chr5g0443131 52.113 71 33 1 185 255 144 213 1.80e-18 83.2
Msa1463520 MtrunA17_Chr4g0075201 48.684 76 39 0 182 257 251 326 2.24e-18 84.3
Msa1463520 MtrunA17_Chr2g0322391 47.368 76 40 0 182 257 333 408 2.68e-18 84.3
Msa1463520 MtrunA17_Chr3g0126391 38.938 113 55 4 146 253 87 190 1.13e-17 81.6
Msa1463520 MtrunA17_Chr2g0302391 55.932 59 26 0 199 257 212 270 1.30e-17 82.0
Msa1463520 MtrunA17_Chr8g0383251 49.315 73 36 1 185 257 95 166 1.32e-17 78.6
Msa1463520 MtrunA17_Chr5g0418781 41.414 99 56 2 173 270 99 196 1.38e-17 80.5
Msa1463520 MtrunA17_Chr4g0025061 55.000 60 27 0 198 257 360 419 1.46e-17 82.0
Msa1463520 MtrunA17_Chr8g0335811 42.529 87 46 2 173 256 126 211 3.54e-17 78.2
Msa1463520 MtrunA17_Chr8g0383351 50.794 63 30 1 194 256 156 217 5.40e-17 77.8
Msa1463520 MtrunA17_Chr7g0238921 45.570 79 39 2 177 255 106 180 7.43e-17 79.0
Msa1463520 MtrunA17_Chr3g0129361 45.455 77 41 1 182 258 128 203 7.64e-17 77.4
Msa1463520 MtrunA17_Chr2g0294231 48.000 75 38 1 181 255 186 259 9.09e-17 79.3
Msa1463520 MtrunA17_Chr1g0188941 42.353 85 45 2 173 257 29 109 2.84e-16 73.2
Msa1463520 MtrunA17_Chr5g0447701 47.222 72 37 1 185 256 239 309 3.04e-16 77.8
Msa1463520 MtrunA17_Chr1g0150271 48.387 62 32 0 196 257 99 160 5.74e-16 75.5
Msa1463520 MtrunA17_Chr6g0485431 36.607 112 58 3 165 264 110 220 9.10e-16 76.3
Msa1463520 MtrunA17_Chr4g0025051 53.333 60 28 0 198 257 335 394 1.35e-15 76.3
Msa1463520 MtrunA17_Chr3g0129321 47.887 71 36 1 185 255 105 174 2.05e-15 73.2
Msa1463520 MtrunA17_Chr4g0068541 42.697 89 49 2 182 269 192 279 5.11e-15 74.3
Msa1463520 MtrunA17_Chr7g0275531 54.386 57 24 1 199 253 119 175 1.02e-14 72.8
Msa1463520 MtrunA17_Chr7g0224801 44.286 70 38 1 194 263 89 157 1.10e-14 70.1
Msa1463520 MtrunA17_Chr8g0347251 43.182 88 47 2 169 253 106 193 1.20e-14 72.8
Msa1463520 MtrunA17_Chr8g0387981 41.837 98 48 4 173 266 106 198 2.28e-14 72.0
Msa1463520 MtrunA17_Chr1g0189391 50.649 77 32 3 181 256 84 155 5.56e-14 70.9
Msa1463520 MtrunA17_Chr7g0248721 43.750 80 43 2 176 255 119 196 1.19e-13 68.6
Msa1463520 MtrunA17_Chr5g0402931 52.632 57 24 2 199 255 124 177 1.21e-12 64.7
Msa1463520 MtrunA17_Chr5g0428351 34.783 115 73 1 141 253 126 240 1.77e-11 63.5
Msa1463520 MtrunA17_Chr8g0386241 42.623 61 34 1 195 255 100 159 2.89e-11 60.8
Msa1463520 MtrunA17_Chr7g0244971 32.031 128 67 5 145 269 84 194 9.78e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1463520 AT2G23320.1 47.432 331 99 12 1 270 1 317 7.41e-78 239
Msa1463520 AT4G24240.1 41.573 356 97 9 1 259 1 342 5.84e-74 230
Msa1463520 AT4G31550.1 43.252 326 107 11 1 263 1 311 1.41e-71 223
Msa1463520 AT4G31550.2 43.558 326 105 12 1 263 1 310 9.08e-71 221
Msa1463520 AT2G24570.1 61.240 129 46 1 137 261 178 306 9.83e-53 174
Msa1463520 AT3G04670.1 78.571 98 20 1 159 256 224 320 2.06e-51 171
Msa1463520 AT5G28650.1 61.314 137 46 3 122 256 189 320 5.94e-51 170
Msa1463520 AT2G30590.1 71.296 108 28 2 150 255 264 370 1.24e-50 171
Msa1463520 AT2G23320.2 41.971 274 89 11 1 218 1 260 1.11e-45 154
Msa1463520 AT4G24240.2 36.190 315 90 9 1 218 1 301 4.45e-44 151
Msa1463520 AT4G31550.3 39.146 281 92 12 1 218 1 265 1.10e-41 144
Msa1463520 AT1G29280.1 51.000 100 42 2 167 260 38 136 5.43e-29 111
Msa1463520 AT4G01250.1 51.402 107 44 2 149 255 87 185 2.74e-28 110
Msa1463520 AT3G58710.2 53.922 102 31 2 174 264 40 136 3.78e-28 109
Msa1463520 AT3G58710.1 50.485 103 40 1 173 264 35 137 6.99e-28 108
Msa1463520 AT2G34830.1 57.471 87 32 2 174 255 186 272 1.74e-27 110
Msa1463520 AT2G34830.2 57.471 87 32 2 174 255 195 281 1.99e-27 110
Msa1463520 AT1G30650.1 57.471 87 32 2 174 255 188 274 2.31e-26 107
Msa1463520 AT3G04670.2 75.000 64 15 1 159 222 224 286 1.17e-25 102
Msa1463520 AT5G52830.1 53.012 83 35 1 173 255 144 222 1.88e-23 98.2
Msa1463520 AT5G26170.1 56.944 72 30 1 185 256 100 170 2.85e-23 93.6
Msa1463520 AT4G23550.1 54.545 77 31 1 181 257 127 199 2.45e-22 94.4
Msa1463520 AT2G04880.2 49.412 85 39 2 185 266 270 353 6.52e-22 94.7
Msa1463520 AT2G04880.1 49.412 85 39 2 185 266 294 377 7.03e-22 95.1
Msa1463520 AT4G26640.5 53.947 76 34 1 182 257 189 263 9.95e-22 93.6
Msa1463520 AT4G26640.6 53.947 76 34 1 182 257 189 263 9.95e-22 93.6
Msa1463520 AT4G26640.4 53.947 76 34 1 182 257 189 263 9.95e-22 93.6
Msa1463520 AT4G26640.3 53.947 76 34 1 182 257 189 263 9.95e-22 93.6
Msa1463520 AT4G26640.2 53.947 76 34 1 182 257 365 439 1.72e-21 94.0
Msa1463520 AT4G26640.7 47.368 95 39 2 173 257 306 399 1.72e-21 94.0
Msa1463520 AT4G26640.1 53.947 76 34 1 182 257 293 367 1.78e-21 94.0
Msa1463520 AT1G13960.2 54.795 73 32 1 185 257 243 314 3.63e-21 92.0
Msa1463520 AT1G13960.2 54.839 62 25 3 195 255 72 131 1.67e-14 72.8
Msa1463520 AT2G38470.1 52.632 76 35 1 182 257 346 420 4.54e-21 92.8
Msa1463520 AT2G38470.1 52.632 57 25 2 199 255 185 239 5.03e-13 68.9
Msa1463520 AT1G13960.1 54.795 73 32 1 185 257 396 467 8.41e-21 92.0
Msa1463520 AT1G13960.1 54.839 62 25 3 195 255 225 284 1.72e-14 73.6
Msa1463520 AT5G07100.2 53.425 73 33 1 185 257 128 199 8.52e-21 88.2
Msa1463520 AT5G07100.2 49.123 57 28 1 199 255 25 80 1.53e-11 62.8
Msa1463520 AT5G07100.4 53.425 73 33 1 185 257 128 199 8.52e-21 88.2
Msa1463520 AT5G07100.4 49.123 57 28 1 199 255 25 80 1.53e-11 62.8
Msa1463520 AT5G07100.5 53.425 73 33 1 185 257 128 199 8.52e-21 88.2
Msa1463520 AT5G07100.5 49.123 57 28 1 199 255 25 80 1.53e-11 62.8
Msa1463520 AT5G07100.3 53.425 73 33 1 185 257 128 199 8.52e-21 88.2
Msa1463520 AT5G07100.3 49.123 57 28 1 199 255 25 80 1.53e-11 62.8
Msa1463520 AT5G64810.1 34.239 184 101 6 93 267 7 179 1.85e-20 86.7
Msa1463520 AT1G29860.1 51.316 76 36 1 182 257 120 194 1.96e-20 88.6
Msa1463520 AT4G18170.1 44.706 85 46 1 173 257 147 230 2.25e-20 89.0
Msa1463520 AT5G07100.1 53.425 73 33 1 185 257 221 292 4.08e-20 88.2
Msa1463520 AT5G07100.1 49.123 57 28 1 199 255 118 173 2.52e-11 63.2
Msa1463520 AT5G49520.1 49.367 79 39 1 182 260 205 282 4.56e-20 89.4
Msa1463520 AT5G45050.2 50.602 83 37 1 173 255 1131 1209 4.86e-20 90.1
Msa1463520 AT5G45050.1 50.602 83 37 1 173 255 1159 1237 4.97e-20 90.1
Msa1463520 AT5G45050.4 50.602 83 37 1 173 255 1020 1098 5.21e-20 90.1
Msa1463520 AT1G62300.1 50.000 76 38 0 182 257 296 371 1.44e-19 88.6
Msa1463520 AT2G03340.1 52.055 73 34 1 185 257 402 473 1.48e-19 88.2
Msa1463520 AT2G03340.1 51.389 72 32 3 194 264 245 314 8.06e-16 77.4
Msa1463520 AT4G04450.2 48.684 76 39 0 182 257 182 257 1.88e-19 87.8
Msa1463520 AT5G56270.1 46.875 96 39 2 173 257 451 545 2.32e-19 87.8
Msa1463520 AT4G22070.4 50.000 76 38 0 182 257 281 356 2.41e-19 87.8
Msa1463520 AT4G22070.3 50.000 76 38 0 182 257 281 356 2.41e-19 87.8
Msa1463520 AT4G22070.2 50.000 76 38 0 182 257 281 356 2.41e-19 87.8
Msa1463520 AT4G22070.1 50.000 76 38 0 182 257 281 356 2.41e-19 87.8
Msa1463520 AT5G15130.2 56.716 67 27 1 195 259 180 246 2.75e-19 87.4
Msa1463520 AT5G15130.1 56.716 67 27 1 195 259 222 288 3.50e-19 87.4
Msa1463520 AT4G04450.1 48.684 76 39 0 182 257 276 351 3.92e-19 87.0
Msa1463520 AT2G47260.1 46.988 83 43 1 173 255 149 230 3.99e-19 85.9
Msa1463520 AT4G30935.1 54.098 61 27 1 199 259 332 391 4.42e-19 86.7
Msa1463520 AT1G68150.1 61.818 55 21 0 203 257 240 294 5.48e-19 85.9
Msa1463520 AT4G39410.1 46.512 86 42 2 174 256 196 280 1.20e-18 84.0
Msa1463520 AT4G31800.2 54.386 57 26 0 199 255 112 168 1.38e-18 82.8
Msa1463520 AT4G31800.1 54.386 57 26 0 199 255 177 233 2.04e-18 83.6
Msa1463520 AT4G26440.1 39.098 133 66 3 123 255 311 428 3.75e-18 84.3
Msa1463520 AT4G26440.1 51.724 58 26 2 199 256 179 234 2.67e-11 63.9
Msa1463520 AT1G80840.1 49.254 67 33 1 199 264 147 213 4.97e-18 82.4
Msa1463520 AT3G62340.1 44.706 85 46 1 176 260 96 179 5.59e-18 82.0
Msa1463520 AT2G37260.2 56.250 64 27 1 194 257 263 325 5.73e-18 82.8
Msa1463520 AT2G37260.2 55.172 58 24 2 199 256 84 139 8.39e-13 67.8
Msa1463520 AT2G37260.3 56.250 64 27 1 194 257 265 327 5.83e-18 82.8
Msa1463520 AT2G37260.3 55.172 58 24 2 199 256 86 141 8.24e-13 67.8
Msa1463520 AT3G01080.1 56.250 64 27 1 194 257 302 364 6.39e-18 83.2
Msa1463520 AT3G01080.1 53.226 62 26 3 195 255 163 222 3.30e-13 69.3
Msa1463520 AT3G01080.2 56.250 64 27 1 194 257 340 402 6.52e-18 83.2
Msa1463520 AT3G01080.2 53.226 62 26 3 195 255 201 260 2.49e-13 69.7
Msa1463520 AT2G37260.1 59.322 59 23 1 199 257 350 407 7.01e-18 83.2
Msa1463520 AT2G37260.1 55.172 58 24 2 199 256 166 221 6.80e-13 68.6
Msa1463520 AT4G01720.1 48.684 76 39 0 182 257 223 298 8.85e-18 83.2
Msa1463520 AT1G69310.4 46.341 82 43 1 174 255 123 203 1.00e-17 81.3
Msa1463520 AT1G69310.2 46.341 82 43 1 174 255 123 203 1.00e-17 81.3
Msa1463520 AT1G69310.1 46.341 82 43 1 174 255 123 203 1.00e-17 81.3
Msa1463520 AT1G55600.1 48.052 77 36 2 182 255 288 363 1.46e-17 82.4
Msa1463520 AT2G40740.1 44.330 97 50 3 161 253 134 230 1.59e-17 80.9
Msa1463520 AT1G64000.1 42.857 84 47 1 172 255 88 170 1.96e-17 78.6
Msa1463520 AT2G40740.3 44.330 97 50 3 161 253 143 239 1.99e-17 80.5
Msa1463520 AT2G25000.2 53.448 58 27 0 199 256 104 161 2.12e-17 79.3
Msa1463520 AT2G25000.4 53.448 58 27 0 199 256 104 161 2.12e-17 79.3
Msa1463520 AT5G46350.1 46.575 73 38 1 185 257 170 241 2.94e-17 80.5
Msa1463520 AT2G25000.3 53.448 58 27 0 199 256 126 183 5.04e-17 78.6
Msa1463520 AT2G25000.1 53.448 58 27 0 199 256 147 204 6.60e-17 79.0
Msa1463520 AT2G44745.1 42.857 84 44 2 175 255 119 201 1.06e-16 77.4
Msa1463520 AT5G41570.1 40.860 93 53 2 176 267 76 167 1.16e-16 76.3
Msa1463520 AT3G01970.1 44.595 74 40 1 185 258 52 124 3.13e-16 74.3
Msa1463520 AT1G18860.1 46.250 80 40 2 181 257 219 298 4.63e-16 78.2
Msa1463520 AT2G30250.1 45.205 73 39 1 185 257 315 386 8.58e-16 77.0
Msa1463520 AT2G21900.1 56.140 57 24 1 199 255 110 165 1.59e-15 73.6
Msa1463520 AT5G45260.1 46.835 79 34 2 179 255 1195 1267 1.79e-15 76.6
Msa1463520 AT5G43290.1 56.140 57 24 1 199 255 115 170 9.70e-15 72.8
Msa1463520 AT5G13080.1 43.836 73 40 1 185 257 54 125 1.17e-14 70.1
Msa1463520 AT2G46130.1 50.000 62 30 1 194 255 26 86 1.57e-14 68.6
Msa1463520 AT4G11070.1 39.316 117 65 3 140 253 85 198 2.09e-14 72.4
Msa1463520 AT4G11070.2 39.316 117 65 3 140 253 53 166 2.12e-14 72.0
Msa1463520 AT4G23810.1 37.984 129 71 4 145 265 100 227 4.85e-14 71.2
Msa1463520 AT1G69810.1 51.724 58 27 1 203 259 208 265 7.65e-14 71.2
Msa1463520 AT1G69810.2 51.724 58 27 1 203 259 150 207 1.09e-13 70.5
Msa1463520 AT3G01080.3 53.226 62 26 3 195 255 201 260 1.62e-13 69.7
Msa1463520 AT1G69310.3 43.902 82 41 2 174 255 123 199 2.37e-13 68.9
Msa1463520 AT5G24110.1 42.169 83 45 2 173 253 89 170 6.56e-12 65.1
Msa1463520 AT2G46400.1 40.476 84 46 2 174 253 78 161 8.11e-12 64.7
Msa1463520 AT3G56400.1 29.936 157 100 5 106 253 22 177 1.19e-11 64.3
Msa1463520 AT1G66560.1 49.153 59 28 1 197 253 102 160 1.53e-11 63.2
Msa1463520 AT4G12020.6 50.877 57 26 2 199 255 469 523 2.60e-11 64.3
Msa1463520 AT4G12020.8 50.877 57 26 2 199 255 469 523 2.60e-11 64.3
Msa1463520 AT4G12020.1 50.877 57 26 2 199 255 469 523 2.73e-11 64.3
Msa1463520 AT4G12020.9 50.877 57 26 2 199 255 469 523 2.73e-11 64.3
Msa1463520 AT4G12020.7 50.877 57 26 2 199 255 469 523 2.80e-11 64.3
Msa1463520 AT4G12020.3 50.877 57 26 2 199 255 469 523 2.92e-11 64.3
Msa1463520 AT4G12020.10 50.877 57 26 2 199 255 469 523 2.97e-11 64.3
Msa1463520 AT4G12020.2 50.877 57 26 2 199 255 469 523 3.15e-11 63.9
Msa1463520 AT4G12020.4 50.877 57 26 2 199 255 469 523 3.26e-11 63.9
Msa1463520 AT4G12020.5 50.877 57 26 2 199 255 402 456 3.34e-11 63.9
Msa1463520 AT4G12020.11 50.877 57 26 2 199 255 469 523 3.49e-11 63.9
Msa1463520 AT1G80590.1 47.761 67 29 2 193 253 76 142 5.14e-11 61.6
Msa1463520 AT1G66550.2 47.458 59 29 1 197 253 102 160 6.26e-11 61.6
Msa1463520 AT5G22570.1 46.479 71 32 2 196 260 108 178 6.36e-11 62.0
Msa1463520 AT1G66550.1 47.458 59 29 1 197 253 107 165 6.89e-11 61.6

Find 63 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACAAGTGCAGCAGTGTTAA+AGG 0.223332 tig0043351:-7952 Msa1463520:CDS
CAAGTTGTTATAACAGTTAA+TGG 0.246070 tig0043351:+7740 Msa1463520:intergenic
ATTTCACTTCTGAATCAAAA+TGG 0.248058 tig0043351:-9129 Msa1463520:CDS
TCCAATATTGTACAAGAAAA+AGG 0.257939 tig0043351:+7642 Msa1463520:intergenic
GGATGAGGTGATCCTTTAAT+AGG 0.293488 tig0043351:+8626 Msa1463520:intergenic
CTCAAAGGAGATTGATTACT+AGG 0.299186 tig0043351:-7674 Msa1463520:three_prime_UTR
CATATTATTGTGCTTTATCT+TGG 0.301193 tig0043351:-7368 Msa1463520:three_prime_UTR
AAGTGTAGCTCTGAGAATTT+TGG 0.302152 tig0043351:-8889 Msa1463520:CDS
TTCCAACTGATGAATATTCT+TGG 0.308006 tig0043351:-8667 Msa1463520:CDS
TCTCAGGTTTCTTCTTCGTT+TGG 0.320070 tig0043351:-8946 Msa1463520:CDS
GCAGTTCAAGAAGCTGCTTC+TGG 0.326064 tig0043351:-9279 Msa1463520:CDS
TATGGTCAGAAACCTATTAA+AGG 0.332994 tig0043351:-8638 Msa1463520:CDS
ACATCATTGTTGGGGATTAG+AGG 0.351620 tig0043351:+9003 Msa1463520:intergenic
ATAAAGCAATTAAATTAAAT+AGG 0.353460 tig0043351:+7472 Msa1463520:intergenic
AAAAGTGGAGATGGTGGATT+TGG 0.362015 tig0043351:-7539 Msa1463520:three_prime_UTR
CTTCTTGAACTGCATTCTCT+TGG 0.364489 tig0043351:+9289 Msa1463520:intergenic
TTATCAATAACATCATTGTT+GGG 0.369596 tig0043351:+8994 Msa1463520:intergenic
CCACAATCACTCCCTCTCTA+TGG 0.372520 tig0043351:-7857 Msa1463520:CDS
CTTATCAATAACATCATTGT+TGG 0.377214 tig0043351:+8993 Msa1463520:intergenic
GAATATTCTTGGAGGAAGTA+TGG 0.385581 tig0043351:-8656 Msa1463520:CDS
TTATACGTAGTGCTTTATCT+TGG 0.387237 tig0043351:-7453 Msa1463520:three_prime_UTR
TGAGGTTGAAAAGAGTGGTT+AGG 0.422019 tig0043351:-8721 Msa1463520:CDS
AAAACATGTAGAAAGAGCTT+TGG 0.435280 tig0043351:-7917 Msa1463520:CDS
TCTCGATGGATTCACGTTGT+TGG 0.437155 tig0043351:+7586 Msa1463520:intergenic
AATCAAAATGGAACAAGAAC+TGG 0.440484 tig0043351:-9117 Msa1463520:CDS
TAAGTAACTACCAACATAGA+TGG 0.441381 tig0043351:+7889 Msa1463520:intergenic
CTCCAAGAATATTCATCAGT+TGG 0.460948 tig0043351:+8665 Msa1463520:intergenic
TATGGCCGTTGAACTAATGA+TGG 0.474638 tig0043351:-9343 Msa1463520:CDS
ATAAATAATACTAGTCTCGA+TGG 0.504369 tig0043351:+7572 Msa1463520:intergenic
GAATACAAACCCTAATTCCA+TGG 0.508067 tig0043351:-9199 Msa1463520:CDS
TGAATTCAATTCAGTTCAAG+AGG 0.508819 tig0043351:+7807 Msa1463520:intergenic
AAGAATAGAAAGAATTGAGT+GGG 0.512466 tig0043351:-7512 Msa1463520:three_prime_UTR
ATGTTGGTAGTTACTTATGA+AGG 0.517787 tig0043351:-7883 Msa1463520:CDS
CTAGTTTCAGAAGTGGAAGT+AGG 0.526285 tig0043351:+9060 Msa1463520:intergenic
GAAAAGAGTGGTTAGGGTAG+CGG 0.527347 tig0043351:-8714 Msa1463520:CDS
TCAGAAGTGGAAGTAGGAGA+AGG 0.528280 tig0043351:+9066 Msa1463520:intergenic
GAGGTTGAAAAGAGTGGTTA+GGG 0.534113 tig0043351:-8720 Msa1463520:CDS
TATCAATAACATCATTGTTG+GGG 0.534993 tig0043351:+8995 Msa1463520:intergenic
CAACTGATGAATATTCTTGG+AGG 0.535323 tig0043351:-8664 Msa1463520:CDS
GTGTCCCATCATTAGTTCAA+CGG 0.535706 tig0043351:+9338 Msa1463520:intergenic
AGGAGATTGATTACTAGGGT+TGG 0.539661 tig0043351:-7669 Msa1463520:three_prime_UTR
CCATAGAGAGGGAGTGATTG+TGG 0.545149 tig0043351:+7857 Msa1463520:intergenic
ACTGTCATTGTTCAAAGAAG+AGG 0.551193 tig0043351:-8837 Msa1463520:intron
TTTGGATGATCCATCTATGT+TGG 0.552858 tig0043351:-7899 Msa1463520:CDS
CAATTGCATCTTCTTACTCA+AGG 0.557530 tig0043351:-7715 Msa1463520:three_prime_UTR
AGCGGCAATAAGCTTGAAGA+TGG 0.558574 tig0043351:-8696 Msa1463520:CDS
TGAAACAGCAACATCAGCTA+CGG 0.565102 tig0043351:+9167 Msa1463520:intergenic
AAGAGAACGAGAAAAGCTAA+AGG 0.578113 tig0043351:+7617 Msa1463520:intergenic
ATAATCAAGTACCTTGGATG+AGG 0.580943 tig0043351:+8611 Msa1463520:intergenic
GTGGAAGTAGGAGAAGGTAA+AGG 0.586033 tig0043351:+9072 Msa1463520:intergenic
TCAAAGGAGATTGATTACTA+GGG 0.586328 tig0043351:-7673 Msa1463520:three_prime_UTR
GTAGACTCTAGTTTCAGAAG+TGG 0.596356 tig0043351:+9053 Msa1463520:intergenic
TTAAAGGATCACCTCATCCA+AGG 0.601665 tig0043351:-8622 Msa1463520:intron
ATTAGCTTCAACCATAGAGA+GGG 0.604376 tig0043351:+7846 Msa1463520:intergenic
AGAGGAGGAATCTGCTGCAA+CGG 0.605875 tig0043351:+9021 Msa1463520:intergenic
TATTAGCTTCAACCATAGAG+AGG 0.607872 tig0043351:+7845 Msa1463520:intergenic
AAAGAATAGAAAGAATTGAG+TGG 0.616462 tig0043351:-7513 Msa1463520:three_prime_UTR
TCATTGTTGGGGATTAGAGG+AGG 0.627905 tig0043351:+9006 Msa1463520:intergenic
ATGGCCGTTGAACTAATGAT+GGG 0.631577 tig0043351:-9342 Msa1463520:CDS
TCTGCTGCAACGGAGTAGCA+TGG 0.640412 tig0043351:+9031 Msa1463520:intergenic
AGAATAGAAAGAATTGAGTG+GGG 0.643884 tig0043351:-7511 Msa1463520:three_prime_UTR
AAACGAAGAAGAAACCTGAG+AGG 0.690900 tig0043351:+8948 Msa1463510:intergenic
TCTTCTTTGAACAATGACAG+TGG 0.712784 tig0043351:+8839 Msa1463510:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAAATTACTTAAGTTTTA+AGG + tig0043351:8356-8375 Msa1463520:intergenic 10.0%
!!! TTAGTGATTTTTTTAATTAT+TGG - tig0043351:8490-8509 Msa1463520:intron 10.0%
!! ATAAAGCAATTAAATTAAAT+AGG + tig0043351:9155-9174 Msa1463520:intergenic 10.0%
!!! AATAAATTACTTAAGTTTTA+AGG + tig0043351:8356-8375 Msa1463520:intergenic 10.0%
!!! TTAGTGATTTTTTTAATTAT+TGG - tig0043351:8490-8509 Msa1463520:intron 10.0%
!! ATAAAGCAATTAAATTAAAT+AGG + tig0043351:9155-9174 Msa1463520:intergenic 10.0%
!! ACTCAATTAAAATATTACTA+AGG + tig0043351:8052-8071 Msa1463520:intergenic 15.0%
!!! AACACATATAAGAAATTTTT+TGG + tig0043351:8093-8112 Msa1463520:intergenic 15.0%
!!! TTTATTTTCAAAGAAAAAAG+TGG - tig0043351:9070-9089 Msa1463520:CDS 15.0%
!! ACTCAATTAAAATATTACTA+AGG + tig0043351:8052-8071 Msa1463520:intergenic 15.0%
!!! AACACATATAAGAAATTTTT+TGG + tig0043351:8093-8112 Msa1463520:intergenic 15.0%
!!! TTTATTTTCAAAGAAAAAAG+TGG - tig0043351:9070-9089 Msa1463520:CDS 15.0%
!! TTATCAATAACATCATTGTT+GGG + tig0043351:7633-7652 Msa1463520:intergenic 20.0%
!! TTAATTACTGTAGAAAAATG+AGG - tig0043351:7885-7904 Msa1463520:CDS 20.0%
!! GGAAATGATTCAAAATTAAA+CGG + tig0043351:8135-8154 Msa1463520:intergenic 20.0%
!!! TTCAAACAATTTTCAAATAC+TGG + tig0043351:8209-8228 Msa1463520:intergenic 20.0%
!! ATCTTAAAAGTAGAAGTTTA+TGG + tig0043351:8442-8461 Msa1463520:intergenic 20.0%
!!! TTTTTTTAATTATTGGTCCA+CGG - tig0043351:8497-8516 Msa1463520:intron 20.0%
!! ATTTAGTACTCAATCTTAAT+AGG + tig0043351:8530-8549 Msa1463520:intergenic 20.0%
!! TTATCAATAACATCATTGTT+GGG + tig0043351:7633-7652 Msa1463520:intergenic 20.0%
!! TTAATTACTGTAGAAAAATG+AGG - tig0043351:7885-7904 Msa1463520:CDS 20.0%
!! GGAAATGATTCAAAATTAAA+CGG + tig0043351:8135-8154 Msa1463520:intergenic 20.0%
!!! TTCAAACAATTTTCAAATAC+TGG + tig0043351:8209-8228 Msa1463520:intergenic 20.0%
!! ATCTTAAAAGTAGAAGTTTA+TGG + tig0043351:8442-8461 Msa1463520:intergenic 20.0%
!!! TTTTTTTAATTATTGGTCCA+CGG - tig0043351:8497-8516 Msa1463520:intron 20.0%
!! ATTTAGTACTCAATCTTAAT+AGG + tig0043351:8530-8549 Msa1463520:intergenic 20.0%
!! TTTTATAGTCCATGGAATTA+GGG + tig0043351:7437-7456 Msa1463520:intergenic 25.0%
! ATTTCACTTCTGAATCAAAA+TGG - tig0043351:7495-7514 Msa1463520:three_prime_UTR 25.0%
! TATCAATAACATCATTGTTG+GGG + tig0043351:7632-7651 Msa1463520:intergenic 25.0%
! CTTATCAATAACATCATTGT+TGG + tig0043351:7634-7653 Msa1463520:intergenic 25.0%
!!! AATTTTGGTAATGAAAAGTG+TGG - tig0043351:7750-7769 Msa1463520:three_prime_UTR 25.0%
! ATACTAATAATCAAGTACCT+TGG + tig0043351:8022-8041 Msa1463520:intergenic 25.0%
! ACTATGTGCATAAAGAAAAA+GGG + tig0043351:8156-8175 Msa1463520:intergenic 25.0%
! TGGTAAATTACAAATCAAGA+TGG + tig0043351:8182-8201 Msa1463520:intergenic 25.0%
!!! AATTTTCAAATACTGGCTTT+TGG + tig0043351:8202-8221 Msa1463520:intergenic 25.0%
! CAAGTTGTTATAACAGTTAA+TGG + tig0043351:8887-8906 Msa1463520:intergenic 25.0%
!! TCCTTTTTCTTGTACAATAT+TGG - tig0043351:8981-9000 Msa1463520:CDS 25.0%
! TCCAATATTGTACAAGAAAA+AGG + tig0043351:8985-9004 Msa1463520:intergenic 25.0%
!! ATAAATAATACTAGTCTCGA+TGG + tig0043351:9055-9074 Msa1463520:intergenic 25.0%
! AAAGAATAGAAAGAATTGAG+TGG - tig0043351:9111-9130 Msa1463520:CDS 25.0%
! AAGAATAGAAAGAATTGAGT+GGG - tig0043351:9112-9131 Msa1463520:CDS 25.0%
! CATATTATTGTGCTTTATCT+TGG - tig0043351:9256-9275 Msa1463520:CDS 25.0%
!! TTTTATAGTCCATGGAATTA+GGG + tig0043351:7437-7456 Msa1463520:intergenic 25.0%
! ATTTCACTTCTGAATCAAAA+TGG - tig0043351:7495-7514 Msa1463520:three_prime_UTR 25.0%
! TATCAATAACATCATTGTTG+GGG + tig0043351:7632-7651 Msa1463520:intergenic 25.0%
! CTTATCAATAACATCATTGT+TGG + tig0043351:7634-7653 Msa1463520:intergenic 25.0%
!!! AATTTTGGTAATGAAAAGTG+TGG - tig0043351:7750-7769 Msa1463520:three_prime_UTR 25.0%
! ATACTAATAATCAAGTACCT+TGG + tig0043351:8022-8041 Msa1463520:intergenic 25.0%
! ACTATGTGCATAAAGAAAAA+GGG + tig0043351:8156-8175 Msa1463520:intergenic 25.0%
! TGGTAAATTACAAATCAAGA+TGG + tig0043351:8182-8201 Msa1463520:intergenic 25.0%
!!! AATTTTCAAATACTGGCTTT+TGG + tig0043351:8202-8221 Msa1463520:intergenic 25.0%
! CAAGTTGTTATAACAGTTAA+TGG + tig0043351:8887-8906 Msa1463520:intergenic 25.0%
!! TCCTTTTTCTTGTACAATAT+TGG - tig0043351:8981-9000 Msa1463520:CDS 25.0%
! TCCAATATTGTACAAGAAAA+AGG + tig0043351:8985-9004 Msa1463520:intergenic 25.0%
!! ATAAATAATACTAGTCTCGA+TGG + tig0043351:9055-9074 Msa1463520:intergenic 25.0%
! AAAGAATAGAAAGAATTGAG+TGG - tig0043351:9111-9130 Msa1463520:CDS 25.0%
! AAGAATAGAAAGAATTGAGT+GGG - tig0043351:9112-9131 Msa1463520:CDS 25.0%
! CATATTATTGTGCTTTATCT+TGG - tig0043351:9256-9275 Msa1463520:CDS 25.0%
! GTTTTATAGTCCATGGAATT+AGG + tig0043351:7438-7457 Msa1463520:intergenic 30.0%
AATCAAAATGGAACAAGAAC+TGG - tig0043351:7507-7526 Msa1463520:three_prime_UTR 30.0%
! TGATTTTTCTTATTCCTCTC+AGG - tig0043351:7662-7681 Msa1463520:three_prime_UTR 30.0%
AAAAATGAGGTTGAAAAGAG+TGG - tig0043351:7898-7917 Msa1463520:CDS 30.0%
TTCCAACTGATGAATATTCT+TGG - tig0043351:7957-7976 Msa1463520:CDS 30.0%
TATGGTCAGAAACCTATTAA+AGG - tig0043351:7986-8005 Msa1463520:intron 30.0%
TTGAGTTATCACTTACTGTA+AGG - tig0043351:8066-8085 Msa1463520:intron 30.0%
CACTATGTGCATAAAGAAAA+AGG + tig0043351:8157-8176 Msa1463520:intergenic 30.0%
! CTTTTTCTTTATGCACATAG+TGG - tig0043351:8155-8174 Msa1463520:intron 30.0%
TTGTGTTTGTCGTTAGTATA+AGG + tig0043351:8282-8301 Msa1463520:intergenic 30.0%
TAAGATACGCAAATAACGTT+AGG - tig0043351:8456-8475 Msa1463520:intron 30.0%
TAGTACTCAATCTTAATAGG+TGG + tig0043351:8527-8546 Msa1463520:intergenic 30.0%
AAAACATGTAGAAAGAGCTT+TGG - tig0043351:8707-8726 Msa1463520:CDS 30.0%
TAAGTAACTACCAACATAGA+TGG + tig0043351:8738-8757 Msa1463520:intergenic 30.0%
!! ATGTTGGTAGTTACTTATGA+AGG - tig0043351:8741-8760 Msa1463520:intron 30.0%
TGAATTCAATTCAGTTCAAG+AGG + tig0043351:8820-8839 Msa1463520:intergenic 30.0%
TCAAAGGAGATTGATTACTA+GGG - tig0043351:8951-8970 Msa1463520:CDS 30.0%
TTCAAAGAAAAAAGTGGAGA+TGG - tig0043351:9076-9095 Msa1463520:CDS 30.0%
AGAATAGAAAGAATTGAGTG+GGG - tig0043351:9113-9132 Msa1463520:CDS 30.0%
TTATACGTAGTGCTTTATCT+TGG - tig0043351:9171-9190 Msa1463520:CDS 30.0%
! GTTTTATAGTCCATGGAATT+AGG + tig0043351:7438-7457 Msa1463520:intergenic 30.0%
AATCAAAATGGAACAAGAAC+TGG - tig0043351:7507-7526 Msa1463520:three_prime_UTR 30.0%
! TGATTTTTCTTATTCCTCTC+AGG - tig0043351:7662-7681 Msa1463520:three_prime_UTR 30.0%
AAAAATGAGGTTGAAAAGAG+TGG - tig0043351:7898-7917 Msa1463520:CDS 30.0%
TTCCAACTGATGAATATTCT+TGG - tig0043351:7957-7976 Msa1463520:CDS 30.0%
TATGGTCAGAAACCTATTAA+AGG - tig0043351:7986-8005 Msa1463520:intron 30.0%
TTGAGTTATCACTTACTGTA+AGG - tig0043351:8066-8085 Msa1463520:intron 30.0%
CACTATGTGCATAAAGAAAA+AGG + tig0043351:8157-8176 Msa1463520:intergenic 30.0%
! CTTTTTCTTTATGCACATAG+TGG - tig0043351:8155-8174 Msa1463520:intron 30.0%
TTGTGTTTGTCGTTAGTATA+AGG + tig0043351:8282-8301 Msa1463520:intergenic 30.0%
TAAGATACGCAAATAACGTT+AGG - tig0043351:8456-8475 Msa1463520:intron 30.0%
TAGTACTCAATCTTAATAGG+TGG + tig0043351:8527-8546 Msa1463520:intergenic 30.0%
AAAACATGTAGAAAGAGCTT+TGG - tig0043351:8707-8726 Msa1463520:CDS 30.0%
TAAGTAACTACCAACATAGA+TGG + tig0043351:8738-8757 Msa1463520:intergenic 30.0%
!! ATGTTGGTAGTTACTTATGA+AGG - tig0043351:8741-8760 Msa1463520:intron 30.0%
TGAATTCAATTCAGTTCAAG+AGG + tig0043351:8820-8839 Msa1463520:intergenic 30.0%
TCAAAGGAGATTGATTACTA+GGG - tig0043351:8951-8970 Msa1463520:CDS 30.0%
TTCAAAGAAAAAAGTGGAGA+TGG - tig0043351:9076-9095 Msa1463520:CDS 30.0%
AGAATAGAAAGAATTGAGTG+GGG - tig0043351:9113-9132 Msa1463520:CDS 30.0%
TTATACGTAGTGCTTTATCT+TGG - tig0043351:9171-9190 Msa1463520:CDS 30.0%
GAATACAAACCCTAATTCCA+TGG - tig0043351:7425-7444 Msa1463520:three_prime_UTR 35.0%
!!! AAGTGTAGCTCTGAGAATTT+TGG - tig0043351:7735-7754 Msa1463520:three_prime_UTR 35.0%
TCTTCTTTGAACAATGACAG+TGG + tig0043351:7788-7807 Msa1463520:intergenic 35.0%
ACTGTCATTGTTCAAAGAAG+AGG - tig0043351:7787-7806 Msa1463520:three_prime_UTR 35.0%
CTCCAAGAATATTCATCAGT+TGG + tig0043351:7962-7981 Msa1463520:intergenic 35.0%
CAACTGATGAATATTCTTGG+AGG - tig0043351:7960-7979 Msa1463520:CDS 35.0%
GAATATTCTTGGAGGAAGTA+TGG - tig0043351:7968-7987 Msa1463520:intron 35.0%
ATAATCAAGTACCTTGGATG+AGG + tig0043351:8016-8035 Msa1463520:intergenic 35.0%
CTCGAAGAAAATGTCTATTG+TGG + tig0043351:8239-8258 Msa1463520:intergenic 35.0%
ATCCAAGACAATGACCTAAT+TGG + tig0043351:8403-8422 Msa1463520:intergenic 35.0%
!! TTTTAATTATTGGTCCACGG+TGG - tig0043351:8500-8519 Msa1463520:intron 35.0%
ACGATGATTATTACTACTGC+AGG - tig0043351:8643-8662 Msa1463520:CDS 35.0%
CGATGATTATTACTACTGCA+GGG - tig0043351:8644-8663 Msa1463520:CDS 35.0%
GATGATTATTACTACTGCAG+GGG - tig0043351:8645-8664 Msa1463520:CDS 35.0%
TTTGGATGATCCATCTATGT+TGG - tig0043351:8725-8744 Msa1463520:CDS 35.0%
! ATTAGCTTCAACCATAGAGA+GGG + tig0043351:8781-8800 Msa1463520:intergenic 35.0%
! TATTAGCTTCAACCATAGAG+AGG + tig0043351:8782-8801 Msa1463520:intergenic 35.0%
CAATTGCATCTTCTTACTCA+AGG - tig0043351:8909-8928 Msa1463520:CDS 35.0%
TTGAGATGAAAAAGTTGTGC+TGG + tig0043351:8935-8954 Msa1463520:intergenic 35.0%
!!! GCACAACTTTTTCATCTCAA+AGG - tig0043351:8935-8954 Msa1463520:CDS 35.0%
CTCAAAGGAGATTGATTACT+AGG - tig0043351:8950-8969 Msa1463520:CDS 35.0%
AAGAGAACGAGAAAAGCTAA+AGG + tig0043351:9010-9029 Msa1463520:intergenic 35.0%
AAAGAAAAAAGTGGAGATGG+TGG - tig0043351:9079-9098 Msa1463520:CDS 35.0%
GAATACAAACCCTAATTCCA+TGG - tig0043351:7425-7444 Msa1463520:three_prime_UTR 35.0%
!!! AAGTGTAGCTCTGAGAATTT+TGG - tig0043351:7735-7754 Msa1463520:three_prime_UTR 35.0%
TCTTCTTTGAACAATGACAG+TGG + tig0043351:7788-7807 Msa1463520:intergenic 35.0%
ACTGTCATTGTTCAAAGAAG+AGG - tig0043351:7787-7806 Msa1463520:three_prime_UTR 35.0%
CTCCAAGAATATTCATCAGT+TGG + tig0043351:7962-7981 Msa1463520:intergenic 35.0%
CAACTGATGAATATTCTTGG+AGG - tig0043351:7960-7979 Msa1463520:CDS 35.0%
GAATATTCTTGGAGGAAGTA+TGG - tig0043351:7968-7987 Msa1463520:intron 35.0%
ATAATCAAGTACCTTGGATG+AGG + tig0043351:8016-8035 Msa1463520:intergenic 35.0%
CTCGAAGAAAATGTCTATTG+TGG + tig0043351:8239-8258 Msa1463520:intergenic 35.0%
ATCCAAGACAATGACCTAAT+TGG + tig0043351:8403-8422 Msa1463520:intergenic 35.0%
!! TTTTAATTATTGGTCCACGG+TGG - tig0043351:8500-8519 Msa1463520:intron 35.0%
ACGATGATTATTACTACTGC+AGG - tig0043351:8643-8662 Msa1463520:CDS 35.0%
CGATGATTATTACTACTGCA+GGG - tig0043351:8644-8663 Msa1463520:CDS 35.0%
GATGATTATTACTACTGCAG+GGG - tig0043351:8645-8664 Msa1463520:CDS 35.0%
TTTGGATGATCCATCTATGT+TGG - tig0043351:8725-8744 Msa1463520:CDS 35.0%
! ATTAGCTTCAACCATAGAGA+GGG + tig0043351:8781-8800 Msa1463520:intergenic 35.0%
! TATTAGCTTCAACCATAGAG+AGG + tig0043351:8782-8801 Msa1463520:intergenic 35.0%
CAATTGCATCTTCTTACTCA+AGG - tig0043351:8909-8928 Msa1463520:CDS 35.0%
TTGAGATGAAAAAGTTGTGC+TGG + tig0043351:8935-8954 Msa1463520:intergenic 35.0%
!!! GCACAACTTTTTCATCTCAA+AGG - tig0043351:8935-8954 Msa1463520:CDS 35.0%
CTCAAAGGAGATTGATTACT+AGG - tig0043351:8950-8969 Msa1463520:CDS 35.0%
AAGAGAACGAGAAAAGCTAA+AGG + tig0043351:9010-9029 Msa1463520:intergenic 35.0%
AAAGAAAAAAGTGGAGATGG+TGG - tig0043351:9079-9098 Msa1463520:CDS 35.0%
ATGGCCGTTGAACTAATGAT+GGG - tig0043351:7282-7301 Msa1463520:three_prime_UTR 40.0%
GTGTCCCATCATTAGTTCAA+CGG + tig0043351:7289-7308 Msa1463520:intergenic 40.0%
CTTCTTGAACTGCATTCTCT+TGG + tig0043351:7338-7357 Msa1463520:intergenic 40.0%
!! AGCTACGGTTTTATAGTCCA+TGG + tig0043351:7445-7464 Msa1463520:intergenic 40.0%
TGAAACAGCAACATCAGCTA+CGG + tig0043351:7460-7479 Msa1463520:intergenic 40.0%
CTAGTTTCAGAAGTGGAAGT+AGG + tig0043351:7567-7586 Msa1463520:intergenic 40.0%
! GTAGACTCTAGTTTCAGAAG+TGG + tig0043351:7574-7593 Msa1463520:intergenic 40.0%
ACATCATTGTTGGGGATTAG+AGG + tig0043351:7624-7643 Msa1463520:intergenic 40.0%
AAACGAAGAAGAAACCTGAG+AGG + tig0043351:7679-7698 Msa1463520:intergenic 40.0%
TCTCAGGTTTCTTCTTCGTT+TGG - tig0043351:7678-7697 Msa1463520:three_prime_UTR 40.0%
TGAGGTTGAAAAGAGTGGTT+AGG - tig0043351:7903-7922 Msa1463520:CDS 40.0%
GAGGTTGAAAAGAGTGGTTA+GGG - tig0043351:7904-7923 Msa1463520:CDS 40.0%
GGATGAGGTGATCCTTTAAT+AGG + tig0043351:8001-8020 Msa1463520:intergenic 40.0%
TTAAAGGATCACCTCATCCA+AGG - tig0043351:8002-8021 Msa1463520:intron 40.0%
GACAATGACCTAATTGGTGT+CGG + tig0043351:8397-8416 Msa1463520:intergenic 40.0%
CACCAATTAGGTCATTGTCT+TGG - tig0043351:8398-8417 Msa1463520:intron 40.0%
TACAAGTGCAGCAGTGTTAA+AGG - tig0043351:8672-8691 Msa1463520:CDS 40.0%
! CTTTCTACATGTTTTCGTGC+TGG + tig0043351:8702-8721 Msa1463520:intergenic 40.0%
AGGAGATTGATTACTAGGGT+TGG - tig0043351:8955-8974 Msa1463520:CDS 40.0%
!! AAAAGTGGAGATGGTGGATT+TGG - tig0043351:9085-9104 Msa1463520:CDS 40.0%
ATGGCCGTTGAACTAATGAT+GGG - tig0043351:7282-7301 Msa1463520:three_prime_UTR 40.0%
GTGTCCCATCATTAGTTCAA+CGG + tig0043351:7289-7308 Msa1463520:intergenic 40.0%
CTTCTTGAACTGCATTCTCT+TGG + tig0043351:7338-7357 Msa1463520:intergenic 40.0%
!! AGCTACGGTTTTATAGTCCA+TGG + tig0043351:7445-7464 Msa1463520:intergenic 40.0%
TGAAACAGCAACATCAGCTA+CGG + tig0043351:7460-7479 Msa1463520:intergenic 40.0%
CTAGTTTCAGAAGTGGAAGT+AGG + tig0043351:7567-7586 Msa1463520:intergenic 40.0%
! GTAGACTCTAGTTTCAGAAG+TGG + tig0043351:7574-7593 Msa1463520:intergenic 40.0%
ACATCATTGTTGGGGATTAG+AGG + tig0043351:7624-7643 Msa1463520:intergenic 40.0%
AAACGAAGAAGAAACCTGAG+AGG + tig0043351:7679-7698 Msa1463520:intergenic 40.0%
TCTCAGGTTTCTTCTTCGTT+TGG - tig0043351:7678-7697 Msa1463520:three_prime_UTR 40.0%
TGAGGTTGAAAAGAGTGGTT+AGG - tig0043351:7903-7922 Msa1463520:CDS 40.0%
GAGGTTGAAAAGAGTGGTTA+GGG - tig0043351:7904-7923 Msa1463520:CDS 40.0%
GGATGAGGTGATCCTTTAAT+AGG + tig0043351:8001-8020 Msa1463520:intergenic 40.0%
TTAAAGGATCACCTCATCCA+AGG - tig0043351:8002-8021 Msa1463520:intron 40.0%
GACAATGACCTAATTGGTGT+CGG + tig0043351:8397-8416 Msa1463520:intergenic 40.0%
CACCAATTAGGTCATTGTCT+TGG - tig0043351:8398-8417 Msa1463520:intron 40.0%
TACAAGTGCAGCAGTGTTAA+AGG - tig0043351:8672-8691 Msa1463520:CDS 40.0%
! CTTTCTACATGTTTTCGTGC+TGG + tig0043351:8702-8721 Msa1463520:intergenic 40.0%
AGGAGATTGATTACTAGGGT+TGG - tig0043351:8955-8974 Msa1463520:CDS 40.0%
!! AAAAGTGGAGATGGTGGATT+TGG - tig0043351:9085-9104 Msa1463520:CDS 40.0%
GTGGAAGTAGGAGAAGGTAA+AGG + tig0043351:7555-7574 Msa1463520:intergenic 45.0%
TCAGAAGTGGAAGTAGGAGA+AGG + tig0043351:7561-7580 Msa1463520:intergenic 45.0%
TCATTGTTGGGGATTAGAGG+AGG + tig0043351:7621-7640 Msa1463520:intergenic 45.0%
GAAAAGAGTGGTTAGGGTAG+CGG - tig0043351:7910-7929 Msa1463520:CDS 45.0%
AGCGGCAATAAGCTTGAAGA+TGG - tig0043351:7928-7947 Msa1463520:CDS 45.0%
! TCTCGATGGATTCACGTTGT+TGG + tig0043351:9041-9060 Msa1463520:intergenic 45.0%
GTGGAAGTAGGAGAAGGTAA+AGG + tig0043351:7555-7574 Msa1463520:intergenic 45.0%
TCAGAAGTGGAAGTAGGAGA+AGG + tig0043351:7561-7580 Msa1463520:intergenic 45.0%
TCATTGTTGGGGATTAGAGG+AGG + tig0043351:7621-7640 Msa1463520:intergenic 45.0%
GAAAAGAGTGGTTAGGGTAG+CGG - tig0043351:7910-7929 Msa1463520:CDS 45.0%
AGCGGCAATAAGCTTGAAGA+TGG - tig0043351:7928-7947 Msa1463520:CDS 45.0%
! TCTCGATGGATTCACGTTGT+TGG + tig0043351:9041-9060 Msa1463520:intergenic 45.0%
!!! GTAATTTATTTTTATTATTT+TGG - tig0043351:8366-8385 Msa1463520:intron 5.0%
!!! GTAATTTATTTTTATTATTT+TGG - tig0043351:8366-8385 Msa1463520:intron 5.0%
GCAGTTCAAGAAGCTGCTTC+TGG - tig0043351:7345-7364 Msa1463520:three_prime_UTR 50.0%
AGAGGAGGAATCTGCTGCAA+CGG + tig0043351:7606-7625 Msa1463520:intergenic 50.0%
TGGTCGAACCGACACCAATT+AGG - tig0043351:8386-8405 Msa1463520:intron 50.0%
TCTTAATAGGTGGTCCACCG+TGG + tig0043351:8517-8536 Msa1463520:intergenic 50.0%
CCATAGAGAGGGAGTGATTG+TGG + tig0043351:8770-8789 Msa1463520:intergenic 50.0%
CCACAATCACTCCCTCTCTA+TGG - tig0043351:8767-8786 Msa1463520:intron 50.0%
GCAGTTCAAGAAGCTGCTTC+TGG - tig0043351:7345-7364 Msa1463520:three_prime_UTR 50.0%
AGAGGAGGAATCTGCTGCAA+CGG + tig0043351:7606-7625 Msa1463520:intergenic 50.0%
TGGTCGAACCGACACCAATT+AGG - tig0043351:8386-8405 Msa1463520:intron 50.0%
TCTTAATAGGTGGTCCACCG+TGG + tig0043351:8517-8536 Msa1463520:intergenic 50.0%
CCATAGAGAGGGAGTGATTG+TGG + tig0043351:8770-8789 Msa1463520:intergenic 50.0%
CCACAATCACTCCCTCTCTA+TGG - tig0043351:8767-8786 Msa1463520:intron 50.0%
TCTGCTGCAACGGAGTAGCA+TGG + tig0043351:7596-7615 Msa1463520:intergenic 55.0%
TCTGCTGCAACGGAGTAGCA+TGG + tig0043351:7596-7615 Msa1463520:intergenic 55.0%
Chromosome Type Strat End Strand Name
tig0043351 gene 7282 9364 7282 ID=Msa1463520;Name=Msa1463520
tig0043351 mRNA 7282 9364 7282 ID=Msa1463520-mRNA-1;Parent=Msa1463520;Name=Msa1463520-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0.66|1|1|1|3|540|270
tig0043351 exon 7282 7981 7282 ID=Msa1463520-mRNA-1:exon:24101;Parent=Msa1463520-mRNA-1
tig0043351 exon 8623 8748 8623 ID=Msa1463520-mRNA-1:exon:24100;Parent=Msa1463520-mRNA-1
tig0043351 exon 8838 9364 8838 ID=Msa1463520-mRNA-1:exon:24099;Parent=Msa1463520-mRNA-1
tig0043351 CDS 8838 9364 8838 ID=Msa1463520-mRNA-1:cds;Parent=Msa1463520-mRNA-1
tig0043351 CDS 8623 8748 8623 ID=Msa1463520-mRNA-1:cds;Parent=Msa1463520-mRNA-1
tig0043351 CDS 7822 7981 7822 ID=Msa1463520-mRNA-1:cds;Parent=Msa1463520-mRNA-1
tig0043351 three_prime_UTR 7282 7821 7282 ID=Msa1463520-mRNA-1:three_prime_utr;Parent=Msa1463520-mRNA-1
Gene Sequence

>Msa1463520

ATGGCCGTTGAACTAATGATGGGACACAAAAACAACAATTTAACAAACAAATTCCAAGAGAATGCAGTTCAAGAAGCTGCTTCTGGTTTACAAAGCATAGAAAAACTCATTAAATTACTATCATCATCACAAGCATGTTCTTCGAATACAAACCCTAATTCCATGGACTATAAAACCGTAGCTGATGTTGCTGTTTCAAAGTTTAAGAATGTTATTTCACTTCTGAATCAAAATGGAACAAGAACTGGTCATGCACGTTTCAGAAGAGCACCTTTACCTTCTCCTACTTCCACTTCTGAAACTAGAGTCTACCATGCTACTCCGTTGCAGCAGATTCCTCCTCTAATCCCCAACAATGATGTTATTGATAAGAATATCATTGATTTTTCTTATTCCTCTCAGGTTTCTTCTTCGTTTGGAAAGTCTTGTGTTTCTTCATGTTCGTTGAAGAGAAAGTGTAGCTCTGAGAATTTTGGTAATGAAAAGTGTGGTAGTTCATCTAGCCACTGTCATTGTTCAAAGAAGAGAAAAATGAGGTTGAAAAGAGTGGTTAGGGTAGCGGCAATAAGCTTGAAGATGGCTGATATTCCAACTGATGAATATTCTTGGAGGAAGTATGGTCAGAAACCTATTAAAGGATCACCTCATCCAAGGGGTTATTACAAGTGCAGCAGTGTTAAAGGTTGTCCAGCACGAAAACATGTAGAAAGAGCTTTGGATGATCCATCTATGTTGGTAGTTACTTATGAAGGCGACCACAATCACTCCCTCTCTATGGTTGAAGCTAATAATCTCATCTTAGAATCCTCTTGA
Protein sequence

>Msa1463520

MAVELMMGHKNNNLTNKFQENAVQEAASGLQSIEKLIKLLSSSQACSSNTNPNSMDYKTVADVAVSKFKNVISLLNQNGTRTGHARFRRAPLPSPTSTSETRVYHATPLQQIPPLIPNNDVIDKNIIDFSYSSQVSSSFGKSCVSSCSLKRKCSSENFGNEKCGSSSSHCHCSKKRKMRLKRVVRVAAISLKMADIPTDEYSWRKYGQKPIKGSPHPRGYYKCSSVKGCPARKHVERALDDPSMLVVTYEGDHNHSLSMVEANNLILESS*