Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0800050 | XP_024628290.1 | 47.101 | 138 | 45 | 5 | 411 | 522 | 108 | 243 | 2.05e-13 | 82.0 |
| Msa0800050 | XP_024628290.1 | 47.107 | 121 | 38 | 4 | 145 | 239 | 121 | 241 | 2.04e-11 | 76.3 |
| Msa0800050 | XP_024628290.1 | 51.887 | 106 | 36 | 4 | 145 | 239 | 96 | 197 | 5.60e-11 | 74.7 |
| Msa0800050 | XP_024628290.1 | 53.153 | 111 | 37 | 4 | 423 | 522 | 93 | 199 | 2.62e-12 | 79.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0800050 | A0A396GFF1 | 47.101 | 138 | 45 | 5 | 411 | 522 | 108 | 243 | 9.79e-14 | 82.0 |
| Msa0800050 | A0A396GFF1 | 47.107 | 121 | 38 | 4 | 145 | 239 | 121 | 241 | 9.74e-12 | 76.3 |
| Msa0800050 | A0A396GFF1 | 51.887 | 106 | 36 | 4 | 145 | 239 | 96 | 197 | 2.67e-11 | 74.7 |
| Msa0800050 | A0A396GFF1 | 53.153 | 111 | 37 | 4 | 423 | 522 | 93 | 199 | 1.25e-12 | 79.0 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0800050 | Msa0999120 | 0.801551 | 8.534887e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0800050 | MtrunA17_Chr8g0341371 | 47.101 | 138 | 45 | 5 | 411 | 522 | 108 | 243 | 1.89e-17 | 82.0 |
| Msa0800050 | MtrunA17_Chr8g0341371 | 53.153 | 111 | 37 | 4 | 423 | 522 | 93 | 199 | 2.41e-16 | 79.0 |
| Msa0800050 | MtrunA17_Chr8g0341371 | 47.107 | 121 | 38 | 4 | 145 | 239 | 121 | 241 | 1.88e-15 | 76.3 |
| Msa0800050 | MtrunA17_Chr8g0341371 | 51.887 | 106 | 36 | 4 | 145 | 239 | 96 | 197 | 5.15e-15 | 74.7 |
| Msa0800050 | MtrunA17_Chr8g0341401 | 45.070 | 142 | 54 | 3 | 102 | 239 | 5 | 126 | 1.75e-16 | 76.3 |
| Msa0800050 | MtrunA17_Chr8g0341401 | 44.828 | 145 | 56 | 3 | 383 | 523 | 5 | 129 | 1.55e-15 | 73.2 |
| Msa0800050 | MtrunA17_Chr8g0356721 | 45.455 | 132 | 52 | 5 | 125 | 239 | 62 | 190 | 6.84e-15 | 73.9 |
| Msa0800050 | MtrunA17_Chr8g0356721 | 43.506 | 154 | 66 | 6 | 387 | 522 | 42 | 192 | 6.97e-15 | 73.9 |
| Msa0800050 | MtrunA17_Chr8g0356751 | 45.455 | 132 | 52 | 5 | 125 | 239 | 62 | 190 | 6.84e-15 | 73.9 |
| Msa0800050 | MtrunA17_Chr8g0356751 | 43.506 | 154 | 66 | 6 | 387 | 522 | 42 | 192 | 6.97e-15 | 73.9 |
| Msa0800050 | MtrunA17_Chr8g0358441 | 45.455 | 132 | 52 | 5 | 125 | 239 | 120 | 248 | 7.86e-15 | 74.7 |
| Msa0800050 | MtrunA17_Chr8g0358441 | 43.506 | 154 | 66 | 6 | 387 | 522 | 100 | 250 | 1.38e-14 | 74.3 |
| Msa0800050 | MtrunA17_Chr8g0356791 | 42.553 | 141 | 57 | 3 | 103 | 239 | 39 | 159 | 5.49e-13 | 67.0 |
| Msa0800050 | MtrunA17_Chr8g0356791 | 34.826 | 201 | 86 | 4 | 327 | 523 | 3 | 162 | 3.25e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 152 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGTTGCTTTCAGTTATT+TGG | 0.121191 | 5_3:+13436477 | Msa0800050:CDS |
| TCTTGTTGCTTTCAGTTATT+TGG | 0.121191 | 5_3:+13437909 | Msa0800050:CDS |
| TGTGCTTCTTTCTCTTTCTT+TGG | 0.152535 | 5_3:-13436807 | None:intergenic |
| ATCACGTCGAGCGTTATTTA+AGG | 0.170670 | 5_3:-13436518 | None:intergenic |
| GGTAAAAGGTTGTCTGTTTC+CGG | 0.177109 | 5_3:-13437369 | None:intergenic |
| CAGCCTGACGTAAGTATTTA+TGG | 0.194985 | 5_3:-13437390 | None:intergenic |
| CAACCTGACGTAGGTATTTA+AGG | 0.235572 | 5_3:-13435994 | None:intergenic |
| TTATTTGGAGACTTGTCTTT+TGG | 0.239506 | 5_3:+13436492 | Msa0800050:CDS |
| ACTTCTCCAACATTAATAAC+TGG | 0.248531 | 5_3:-13438259 | None:intergenic |
| ACCCTTTAGCGGCAAGTTAA+AGG | 0.260518 | 5_3:-13437542 | None:intergenic |
| GGAAGAGTTGGATGCTGATA+TGG | 0.261335 | 5_3:+13436570 | Msa0800050:CDS |
| GGAAGAGTTGGATGCTGATA+TGG | 0.261335 | 5_3:+13438002 | Msa0800050:CDS |
| ACGTAAGTATTTATGGTAAA+AGG | 0.261548 | 5_3:-13437383 | None:intergenic |
| ACGTAGGTATTTAAGGTAAA+AGG | 0.263987 | 5_3:-13435987 | None:intergenic |
| TGGGCTTCTTTCTCTTTGTT+TGG | 0.264328 | 5_3:-13438239 | None:intergenic |
| CCTCTTCTTTCATCAGCTCC+TGG | 0.271580 | 5_3:-13436595 | None:intergenic |
| CCTCTTCTTTCATCAGCTCC+TGG | 0.271580 | 5_3:-13438027 | None:intergenic |
| GTGCTTCTTTCTCTTTCTTT+GGG | 0.271599 | 5_3:-13436806 | None:intergenic |
| TCGCGTCTTCTTCTTCGTTT+TGG | 0.294765 | 5_3:+13436833 | Msa0800050:CDS |
| TAGGGCCATCACAACTGATA+TGG | 0.304727 | 5_3:+13436642 | Msa0800050:CDS |
| TAGGGCCATCACAACTGATA+TGG | 0.304727 | 5_3:+13438074 | Msa0800050:CDS |
| CTCTTCTTTCATCAGCTCCT+GGG | 0.315736 | 5_3:-13436594 | None:intergenic |
| CTCTTCTTTCATCAGCTCCT+GGG | 0.315736 | 5_3:-13438026 | None:intergenic |
| GGCTAAGGCCAAGTGTTTAA+AGG | 0.321746 | 5_3:+13437504 | Msa0800050:CDS |
| TCTTCCGAGGCAAGTTTCTC+TGG | 0.342511 | 5_3:+13437701 | Msa0800050:CDS |
| TTATTTGGAGATTTGTCTTT+CGG | 0.344111 | 5_3:+13437924 | Msa0800050:CDS |
| AAGAGTTGGTGGAGGCTGAT+AGG | 0.362424 | 5_3:+13436716 | Msa0800050:CDS |
| AAGAGTTGGTGGAGGCTGAT+AGG | 0.362424 | 5_3:+13438148 | Msa0800050:CDS |
| GGTAAAAGGTTCTCTGTTGC+CGG | 0.363545 | 5_3:-13435973 | None:intergenic |
| GTCTGTTTCCGGGTCAAATC+AGG | 0.363927 | 5_3:-13437358 | None:intergenic |
| CTCTGTTGCCGGGTCAAATC+AGG | 0.368984 | 5_3:-13435962 | None:intergenic |
| ACCTTTAACTTGCCGCTAAA+GGG | 0.373070 | 5_3:+13437541 | Msa0800050:CDS |
| GAGCATCTTGAAATTCTTCT+CGG | 0.376887 | 5_3:-13436438 | None:intergenic |
| CGAAGCCTCCTTTAAACACT+TGG | 0.389342 | 5_3:-13437512 | None:intergenic |
| GGTTTCAAGTGTCGCATTGA+TGG | 0.389397 | 5_3:+13436272 | Msa0800050:CDS |
| GGTTTCAAGTGTCGCATTGA+TGG | 0.389397 | 5_3:+13437674 | Msa0800050:CDS |
| CTCTCCTCAATCGTCGCAAA+TGG | 0.398210 | 5_3:+13437153 | Msa0800050:CDS |
| CCGTGTCAATCCATCAGTTA+TGG | 0.398619 | 5_3:+13437297 | Msa0800050:CDS |
| CCAAGCCTCCTTTATACACT+TGG | 0.398852 | 5_3:-13436119 | None:intergenic |
| GGCTATGGCCAAGTGTATAA+AGG | 0.401467 | 5_3:+13436111 | Msa0800050:CDS |
| TTCCTTCTTTCTCTTTCTCT+CGG | 0.405594 | 5_3:-13436695 | None:intergenic |
| TTCCTTCTTTCTCTTTCTCT+CGG | 0.405594 | 5_3:-13438127 | None:intergenic |
| TGGAGTGAATGAATGAATTT+CGG | 0.409489 | 5_3:-13435630 | None:intergenic |
| GTAAAAGGTTGTCTGTTTCC+GGG | 0.416958 | 5_3:-13437368 | None:intergenic |
| ACCTTCAACTTGCCGCTAAA+GGG | 0.417139 | 5_3:+13436148 | Msa0800050:CDS |
| AGAATGAGATGGAGGCTGAT+AGG | 0.417870 | 5_3:+13436623 | Msa0800050:CDS |
| AGAATGAGATGGAGGCTGAT+AGG | 0.417870 | 5_3:+13438055 | Msa0800050:CDS |
| GAGCATCTTGAAAGGCTTCT+CGG | 0.427807 | 5_3:-13437870 | None:intergenic |
| AACCTTCAACTTGCCGCTAA+AGG | 0.433311 | 5_3:+13436147 | Msa0800050:CDS |
| AACCTTTAACTTGCCGCTAA+AGG | 0.433557 | 5_3:+13437540 | Msa0800050:CDS |
| TCAAATCAGGACCTCGGATG+GGG | 0.438693 | 5_3:-13437345 | None:intergenic |
| TTACCATAAATACTTACGTC+AGG | 0.455298 | 5_3:+13437387 | Msa0800050:CDS |
| AAAGAGAAAGAAGGAAGAGT+TGG | 0.456774 | 5_3:+13436702 | Msa0800050:CDS |
| AAAGAGAAAGAAGGAAGAGT+TGG | 0.456774 | 5_3:+13438134 | Msa0800050:CDS |
| AAGCGCAATCCGAAGTTCTC+TGG | 0.460059 | 5_3:+13435920 | Msa0800050:CDS |
| ATAAACTTGCCTCGGAAGAA+AGG | 0.465616 | 5_3:-13436295 | None:intergenic |
| GTCTTTAGCCTTACAAAAGA+AGG | 0.467568 | 5_3:+13436549 | Msa0800050:CDS |
| GTCTTTAGCCTTACAAAAGA+AGG | 0.467568 | 5_3:+13437981 | Msa0800050:CDS |
| ACCCTTTAGCGGCAAGTTGA+AGG | 0.468231 | 5_3:-13436149 | None:intergenic |
| GAGAAAGAAGGAAGAGTTGG+TGG | 0.470031 | 5_3:+13436705 | Msa0800050:CDS |
| GAGAAAGAAGGAAGAGTTGG+TGG | 0.470031 | 5_3:+13438137 | Msa0800050:CDS |
| GGCTGTCTTTCGAGAGGCTA+AGG | 0.474651 | 5_3:+13437489 | Msa0800050:CDS |
| TTACCTTAAATACCTACGTC+AGG | 0.475709 | 5_3:+13435991 | Msa0800050:CDS |
| TGCCTTAATTAACGCTCAAA+AGG | 0.476122 | 5_3:+13437948 | Msa0800050:CDS |
| GAATGAGATGGAGGCTGATA+GGG | 0.477283 | 5_3:+13436624 | Msa0800050:CDS |
| GAATGAGATGGAGGCTGATA+GGG | 0.477283 | 5_3:+13438056 | Msa0800050:CDS |
| CATTGATGGCCTTTCTTCCG+AGG | 0.478092 | 5_3:+13436286 | Msa0800050:CDS |
| CATTGATGGCCTTTCTTCCG+AGG | 0.478092 | 5_3:+13437688 | Msa0800050:CDS |
| AGAAACTTGCCTCGGAAGAA+AGG | 0.478404 | 5_3:-13437697 | None:intergenic |
| GGTCAAATCAGGACCTCGGA+TGG | 0.478947 | 5_3:-13437347 | None:intergenic |
| GCAGCAGCACCATCACCATC+TGG | 0.481182 | 5_3:-13437433 | None:intergenic |
| GTCTTTAATCCTCCAGATCA+TGG | 0.483639 | 5_3:+13436025 | Msa0800050:CDS |
| GCAGCACCATCACCATGATC+TGG | 0.483740 | 5_3:-13436037 | None:intergenic |
| CTTCTCCAACATTAATAACT+GGG | 0.486848 | 5_3:-13438258 | None:intergenic |
| GGATTGCGCTTCATAACTGA+TGG | 0.492897 | 5_3:-13435908 | None:intergenic |
| AGAGTTGGTGGAGGCTGATA+GGG | 0.498363 | 5_3:+13436717 | Msa0800050:CDS |
| AGAGTTGGTGGAGGCTGATA+GGG | 0.498363 | 5_3:+13438149 | Msa0800050:CDS |
| TCTTCTTTCATCAGCTCCGA+TGG | 0.500392 | 5_3:-13438196 | None:intergenic |
| AAAGAAGGAAGAGTTGGTGG+AGG | 0.503176 | 5_3:+13436708 | Msa0800050:CDS |
| AAAGAAGGAAGAGTTGGTGG+AGG | 0.503176 | 5_3:+13438140 | Msa0800050:CDS |
| AGATTTGAGTTACCCTTTAG+CGG | 0.504537 | 5_3:-13437553 | None:intergenic |
| TTGGATGCTGATATGGGCCC+AGG | 0.504712 | 5_3:+13436577 | Msa0800050:CDS |
| TTGGATGCTGATATGGGCCC+AGG | 0.504712 | 5_3:+13438009 | Msa0800050:CDS |
| TTTCATCAGCTCCTATGGCT+CGG | 0.509186 | 5_3:-13436759 | None:intergenic |
| GAAGAGTTGGATGCTGATAT+GGG | 0.510628 | 5_3:+13436571 | Msa0800050:CDS |
| GAAGAGTTGGATGCTGATAT+GGG | 0.510628 | 5_3:+13438003 | Msa0800050:CDS |
| TTACCCATTTGCGACGATTG+AGG | 0.514361 | 5_3:-13437157 | None:intergenic |
| TTTCATCAGCTCCGATGGCT+CGG | 0.517438 | 5_3:-13438191 | None:intergenic |
| AGGGCCATCACAACTGATAT+GGG | 0.518141 | 5_3:+13436643 | Msa0800050:CDS |
| AGGGCCATCACAACTGATAT+GGG | 0.518141 | 5_3:+13438075 | Msa0800050:CDS |
| GTCAAATCAGGACCTCGGAT+GGG | 0.518315 | 5_3:-13437346 | None:intergenic |
| AAGAAGCTCAGCCGAGCCAT+AGG | 0.520622 | 5_3:+13436748 | Msa0800050:CDS |
| GGCTGTCTATGAAGAGGCTA+TGG | 0.521042 | 5_3:+13436096 | Msa0800050:CDS |
| AAGAAGCTCAGCCGAGCCAT+CGG | 0.522076 | 5_3:+13438180 | Msa0800050:CDS |
| ATACTTACGTCAGGCTGTCA+TGG | 0.522431 | 5_3:+13437396 | Msa0800050:CDS |
| TTGGCCCATATCAGTTGTGA+TGG | 0.523611 | 5_3:-13436647 | None:intergenic |
| TTGGCCCATATCAGTTGTGA+TGG | 0.523611 | 5_3:-13438079 | None:intergenic |
| CCAAGTGTATAAAGGAGGCT+TGG | 0.527212 | 5_3:+13436119 | Msa0800050:CDS |
| ATCAGGACCTCTAAAACGCA+TGG | 0.528723 | 5_3:-13435945 | None:intergenic |
| TGTTTAAAGGAGGCTTCGAA+TGG | 0.535251 | 5_3:+13437517 | Msa0800050:CDS |
| TCTCCTCAATCGTCGCAAAT+GGG | 0.535323 | 5_3:+13437154 | Msa0800050:CDS |
| AAGAAGACGCGATGAGCGAG+TGG | 0.540329 | 5_3:-13435650 | None:intergenic |
| ACAATTGATGGTTGCTGTTG+AGG | 0.547736 | 5_3:+13436075 | Msa0800050:CDS |
| TGTATAAAGGAGGCTTGGAA+TGG | 0.548000 | 5_3:+13436124 | Msa0800050:CDS |
| GTAAAAGGTTCTCTGTTGCC+GGG | 0.553471 | 5_3:-13435972 | None:intergenic |
| ATACCTACGTCAGGTTGTCA+TGG | 0.557119 | 5_3:+13436000 | Msa0800050:CDS |
| AATCCTTCGAGCATCTTGAA+AGG | 0.557227 | 5_3:-13437878 | None:intergenic |
| CTTACAAAAGAAGGAAGAGT+TGG | 0.558318 | 5_3:+13436558 | Msa0800050:CDS |
| CTTACAAAAGAAGGAAGAGT+TGG | 0.558318 | 5_3:+13437990 | Msa0800050:CDS |
| AAGAATTTCAAGATGCTCGA+AGG | 0.559260 | 5_3:+13436443 | Msa0800050:CDS |
| CCTGCGTTTAGCTTTGCTCA+AGG | 0.562114 | 5_3:+13435686 | Msa0800050:five_prime_UTR |
| ATGATGCGCTCCATAACTGA+TGG | 0.563188 | 5_3:-13437307 | None:intergenic |
| TTATCAGTCAAAACTGAACA+TGG | 0.568475 | 5_3:+13437653 | Msa0800050:intron |
| TCAGGACCTCTAAAACGCAT+GGG | 0.572353 | 5_3:-13435944 | None:intergenic |
| GGTGGAGGCTGATAGGGCTA+TGG | 0.577374 | 5_3:+13436723 | Msa0800050:CDS |
| GGTGGAGGCTGATAGGGCTA+TGG | 0.577374 | 5_3:+13438155 | Msa0800050:CDS |
| CAAATCAGGACCTCGGATGG+GGG | 0.578070 | 5_3:-13437344 | None:intergenic |
| TTATCAGACAAAACTGAACA+TGG | 0.578454 | 5_3:+13436251 | Msa0800050:intron |
| TTAGAGGTCCTGATTTGACC+CGG | 0.586344 | 5_3:+13435954 | Msa0800050:CDS |
| CGATTGAGGAGAGATAAAAT+CGG | 0.589750 | 5_3:-13437143 | None:intergenic |
| GGCCGAGAGAAAGAGAAAGA+AGG | 0.595246 | 5_3:+13436693 | Msa0800050:CDS |
| GGCCGAGAGAAAGAGAAAGA+AGG | 0.595246 | 5_3:+13438125 | Msa0800050:CDS |
| CCAGGAGCTGATGAAAGAAG+AGG | 0.599571 | 5_3:+13436595 | Msa0800050:CDS |
| CCAGGAGCTGATGAAAGAAG+AGG | 0.599571 | 5_3:+13438027 | Msa0800050:CDS |
| AAGCTAAACGCAGGACGACG+TGG | 0.601675 | 5_3:-13435677 | None:intergenic |
| AAGCCTTTCAAGATGCTCGA+AGG | 0.601681 | 5_3:+13437875 | Msa0800050:CDS |
| AATCCTCCAGATCATGGTGA+TGG | 0.602556 | 5_3:+13436031 | Msa0800050:CDS |
| TCCGAGGTCCTGATTTGACC+CGG | 0.602781 | 5_3:+13437350 | Msa0800050:CDS |
| GATGTCTTTAATCCTCCAGA+TGG | 0.607037 | 5_3:+13437418 | Msa0800050:CDS |
| ATCACAACTGATATGGGCCA+AGG | 0.613279 | 5_3:+13436649 | Msa0800050:CDS |
| ATCACAACTGATATGGGCCA+AGG | 0.613279 | 5_3:+13438081 | Msa0800050:CDS |
| TTTAATCCTCCAGATGGTGA+TGG | 0.613713 | 5_3:+13437424 | Msa0800050:CDS |
| TCCGGGTCAAATCAGGACCT+CGG | 0.616398 | 5_3:-13437351 | None:intergenic |
| CAGGAGCTGATGAAAGAAGA+GGG | 0.617975 | 5_3:+13436596 | Msa0800050:CDS |
| CAGGAGCTGATGAAAGAAGA+GGG | 0.617975 | 5_3:+13438028 | Msa0800050:CDS |
| CGCATGGGGCCAGAGAACTT+CGG | 0.628951 | 5_3:-13435929 | None:intergenic |
| AGCTAAACGCAGGACGACGT+GGG | 0.630692 | 5_3:-13435676 | None:intergenic |
| TAAGGCCAAGTGTTTAAAGG+AGG | 0.638569 | 5_3:+13437507 | Msa0800050:CDS |
| ACGTCCAGAGAAACTTGCCT+CGG | 0.641789 | 5_3:-13437705 | None:intergenic |
| AGCTGTTGAAAAGAATGAGA+TGG | 0.645663 | 5_3:+13436672 | Msa0800050:CDS |
| AGCTGTTGAAAAGAATGAGA+TGG | 0.645663 | 5_3:+13438104 | Msa0800050:CDS |
| GCACCATCACCATGATCTGG+AGG | 0.646353 | 5_3:-13436034 | None:intergenic |
| CCATAACTGATGGATTGACA+CGG | 0.661377 | 5_3:-13437297 | None:intergenic |
| TATGGCCAAGTGTATAAAGG+AGG | 0.674277 | 5_3:+13436114 | Msa0800050:CDS |
| CCTTGAGCAAAGCTAAACGC+AGG | 0.685456 | 5_3:-13435686 | None:intergenic |
| GCAGCACCATCACCATCTGG+AGG | 0.686290 | 5_3:-13437430 | None:intergenic |
| CAGGACCTCTAAAACGCATG+GGG | 0.688981 | 5_3:-13435943 | None:intergenic |
| TGTTGAGGCTGTCTATGAAG+AGG | 0.698607 | 5_3:+13436090 | Msa0800050:CDS |
| TCATAACTGATGGATTGACA+CGG | 0.718910 | 5_3:-13435898 | None:intergenic |
| CATCCATGACAACCTGACGT+AGG | 0.725999 | 5_3:-13436003 | None:intergenic |
| TAACTGATGGATTGACACGG+CGG | 0.747220 | 5_3:-13435895 | None:intergenic |
| TAACTGATGGATTGACACGG+CGG | 0.747220 | 5_3:-13437294 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAGATAAAATGAAAAAG+AGG | - | chr5_3:13436177-13436196 | None:intergenic | 15.0% |
| !!! | TCATTTTATCTTTATTGATT+AGG | + | chr5_3:13436182-13436201 | Msa0800050:intron | 15.0% |
| !!! | CATTTTATCTTTATTGATTA+GGG | + | chr5_3:13436183-13436202 | Msa0800050:intron | 15.0% |
| !! | ATAAAGATAAAATGAAAAAG+AGG | - | chr5_3:13436177-13436196 | None:intergenic | 15.0% |
| !! | AGAATTGAAAAAAGAATGAA+GGG | - | chr5_3:13435717-13435736 | None:intergenic | 20.0% |
| !! | TAGAATTGAAAAAAGAATGA+AGG | - | chr5_3:13435718-13435737 | None:intergenic | 20.0% |
| !!! | GATTCTTTTTTACTTGATTA+AGG | + | chr5_3:13435776-13435795 | Msa0800050:intron | 20.0% |
| !!! | TTTTTCTTTAGAACAATTGA+TGG | + | chr5_3:13436063-13436082 | Msa0800050:CDS | 20.0% |
| !! | AGAATTGAAAAAAGAATGAA+GGG | - | chr5_3:13435717-13435736 | None:intergenic | 20.0% |
| !! | TAGAATTGAAAAAAGAATGA+AGG | - | chr5_3:13435718-13435737 | None:intergenic | 20.0% |
| !! | GAGAAATGTAATTTAATTGA+AGG | - | chr5_3:13437005-13437024 | None:intergenic | 20.0% |
| !!! | TGATTAAGATTTAAAACCTT+TGG | + | chr5_3:13437189-13437208 | Msa0800050:intron | 20.0% |
| !!! | TTTTTCTTTAGAACAATTGA+AGG | + | chr5_3:13436063-13436082 | Msa0800050:CDS | 20.0% |
| !!! | TCATTTTATCTTTATTGATC+AGG | + | chr5_3:13437584-13437603 | Msa0800050:intron | 20.0% |
| !!! | CATTTTATCTTTATTGATCA+GGG | + | chr5_3:13437585-13437604 | Msa0800050:intron | 20.0% |
| !! | TGATTAAGGTTTAAAACCTT+TGG | + | chr5_3:13435790-13435809 | Msa0800050:intron | 25.0% |
| !!! | AATCAAGTATTGAATTCCAA+AGG | - | chr5_3:13435809-13435828 | None:intergenic | 25.0% |
| !!! | TTCAGGAAATTTTGTTTTGT+AGG | - | chr5_3:13435870-13435889 | None:intergenic | 25.0% |
| ! | TACAAAACAAAATTTCCTGA+AGG | + | chr5_3:13435869-13435888 | Msa0800050:intron | 25.0% |
| ! | ACAAAACAAAATTTCCTGAA+GGG | + | chr5_3:13435870-13435889 | Msa0800050:intron | 25.0% |
| !! | GAAATTGATTGTGTTTTTCA+TGG | + | chr5_3:13436938-13436957 | Msa0800050:intron | 25.0% |
| !!! | AATCAAGTATTGAATTCCAA+AGG | - | chr5_3:13435809-13435828 | None:intergenic | 25.0% |
| !!! | TTCAGGAAATTTTGTTTTGT+AGG | - | chr5_3:13435870-13435889 | None:intergenic | 25.0% |
| ! | TACAAAACAAAATTTCCTGA+AGG | + | chr5_3:13435869-13435888 | Msa0800050:intron | 25.0% |
| ! | ACAAAACAAAATTTCCTGAA+GGG | + | chr5_3:13435870-13435889 | Msa0800050:intron | 25.0% |
| ! | ACGTAAGTATTTATGGTAAA+AGG | - | chr5_3:13437386-13437405 | None:intergenic | 25.0% |
| ! | TTATTTGGAGATTTGTCTTT+CGG | + | chr5_3:13437924-13437943 | Msa0800050:CDS | 25.0% |
| TGGAGTGAATGAATGAATTT+CGG | - | chr5_3:13435633-13435652 | None:intergenic | 30.0% | |
| ! | ACGTAGGTATTTAAGGTAAA+AGG | - | chr5_3:13435990-13436009 | None:intergenic | 30.0% |
| !! | TTAGGGCTTTATTCAATTCT+TGG | + | chr5_3:13436200-13436219 | Msa0800050:intron | 30.0% |
| TTATCAGACAAAACTGAACA+TGG | + | chr5_3:13436251-13436270 | Msa0800050:intron | 30.0% | |
| !! | TCTTGTTGCTTTCAGTTATT+TGG | + | chr5_3:13436477-13436496 | Msa0800050:CDS | 30.0% |
| ! | TTATTTGGAGACTTGTCTTT+TGG | + | chr5_3:13436492-13436511 | Msa0800050:CDS | 30.0% |
| ! | TATTTGGAGACTTGTCTTTT+GGG | + | chr5_3:13436493-13436512 | Msa0800050:CDS | 30.0% |
| TCATAATATCTTCTGTGAAC+TGG | + | chr5_3:13436902-13436921 | Msa0800050:intron | 30.0% | |
| CATAATATCTTCTGTGAACT+GGG | + | chr5_3:13436903-13436922 | Msa0800050:intron | 30.0% | |
| ATAATATCTTCTGTGAACTG+GGG | + | chr5_3:13436904-13436923 | Msa0800050:intron | 30.0% | |
| AGAACAGATTCGAATAATGA+GGG | - | chr5_3:13436971-13436990 | None:intergenic | 30.0% | |
| ! | CTCTACTAATTTTGTTCTTG+TGG | + | chr5_3:13437022-13437041 | Msa0800050:intron | 30.0% |
| TTACCATAAATACTTACGTC+AGG | + | chr5_3:13437387-13437406 | Msa0800050:CDS | 30.0% | |
| TTATCAGTCAAAACTGAACA+TGG | + | chr5_3:13437653-13437672 | Msa0800050:intron | 30.0% | |
| !! | TCTTGTTGCTTTCAGTTATT+TGG | + | chr5_3:13436477-13436496 | Msa0800050:CDS | 30.0% |
| ! | ATCCTTTTGAGCGTTAATTA+AGG | - | chr5_3:13437953-13437972 | None:intergenic | 30.0% |
| TGCTTCTTCTTCTGTGAATT+GGG | + | chr5_3:13435753-13435772 | Msa0800050:intron | 35.0% | |
| ! | AGAAAGCATAGGGTAAGTTA+AGG | - | chr5_3:13435839-13435858 | None:intergenic | 35.0% |
| ! | GGAGCAAATAAGAAAGCATA+GGG | - | chr5_3:13435849-13435868 | None:intergenic | 35.0% |
| ! | AGGAGCAAATAAGAAAGCAT+AGG | - | chr5_3:13435850-13435869 | None:intergenic | 35.0% |
| !! | TCATAACTGATGGATTGACA+CGG | - | chr5_3:13435901-13435920 | None:intergenic | 35.0% |
| TTACCTTAAATACCTACGTC+AGG | + | chr5_3:13435991-13436010 | Msa0800050:CDS | 35.0% | |
| AAAAAGAGGTTACCCTTTAG+CGG | - | chr5_3:13436163-13436182 | None:intergenic | 35.0% | |
| ATATCAATCTCTAAACACGC+AGG | + | chr5_3:13436390-13436409 | Msa0800050:intron | 35.0% | |
| !! | AGCAAGCTGTAACTTTTTCT+TGG | - | chr5_3:13436416-13436435 | None:intergenic | 35.0% |
| GAGCATCTTGAAATTCTTCT+CGG | - | chr5_3:13436441-13436460 | None:intergenic | 35.0% | |
| AAGAATTTCAAGATGCTCGA+AGG | + | chr5_3:13436443-13436462 | Msa0800050:CDS | 35.0% | |
| !! | GTCTTTAGCCTTACAAAAGA+AGG | + | chr5_3:13436549-13436568 | Msa0800050:CDS | 35.0% |
| ! | CAACTCTTCCTTCTTTTGTA+AGG | - | chr5_3:13436560-13436579 | None:intergenic | 35.0% |
| CTTACAAAAGAAGGAAGAGT+TGG | + | chr5_3:13436558-13436577 | Msa0800050:CDS | 35.0% | |
| AAGAGGGAAAAAGAATGAGA+TGG | + | chr5_3:13436612-13436631 | Msa0800050:CDS | 35.0% | |
| AGCTGTTGAAAAGAATGAGA+TGG | + | chr5_3:13436672-13436691 | Msa0800050:CDS | 35.0% | |
| TTCCTTCTTTCTCTTTCTCT+CGG | - | chr5_3:13436698-13436717 | None:intergenic | 35.0% | |
| AAAGAGAAAGAAGGAAGAGT+TGG | + | chr5_3:13436702-13436721 | Msa0800050:CDS | 35.0% | |
| ! | TTTTCTTTCATCAGCTCCTA+TGG | - | chr5_3:13436767-13436786 | None:intergenic | 35.0% |
| GTGCTTCTTTCTCTTTCTTT+GGG | - | chr5_3:13436809-13436828 | None:intergenic | 35.0% | |
| TGTGCTTCTTTCTCTTTCTT+TGG | - | chr5_3:13436810-13436829 | None:intergenic | 35.0% | |
| GAGAACAGATTCGAATAATG+AGG | - | chr5_3:13436972-13436991 | None:intergenic | 35.0% | |
| ! | TCTCTCTCTCATTTGGAATT+TGG | + | chr5_3:13437079-13437098 | Msa0800050:intron | 35.0% |
| CGATTGAGGAGAGATAAAAT+CGG | - | chr5_3:13437146-13437165 | None:intergenic | 35.0% | |
| ! | AGAAAGCATAGGGTAAGTTA+AGG | - | chr5_3:13435839-13435858 | None:intergenic | 35.0% |
| ! | GGAGCAAATAAGAAAGCATA+GGG | - | chr5_3:13435849-13435868 | None:intergenic | 35.0% |
| ! | AGGAGCAAATAAGAAAGCAT+AGG | - | chr5_3:13435850-13435869 | None:intergenic | 35.0% |
| !!! | ACAATTGAAGGTTGCTTTTG+AGG | + | chr5_3:13437468-13437487 | Msa0800050:CDS | 35.0% |
| ! | AGATTTGAGTTACCCTTTAG+CGG | - | chr5_3:13437556-13437575 | None:intergenic | 35.0% |
| ATATCTATCTCTAAACACGC+AGG | + | chr5_3:13437822-13437841 | Msa0800050:intron | 35.0% | |
| TGCCTTAATTAACGCTCAAA+AGG | + | chr5_3:13437948-13437967 | Msa0800050:CDS | 35.0% | |
| !! | GTCTTTAGCCTTACAAAAGA+AGG | + | chr5_3:13436549-13436568 | Msa0800050:CDS | 35.0% |
| ! | CAACTCTTCCTTCTTTTGTA+AGG | - | chr5_3:13436560-13436579 | None:intergenic | 35.0% |
| CTTACAAAAGAAGGAAGAGT+TGG | + | chr5_3:13436558-13436577 | Msa0800050:CDS | 35.0% | |
| AAGAGGGAAAAAGAATGAGA+TGG | + | chr5_3:13436612-13436631 | Msa0800050:CDS | 35.0% | |
| AGCTGTTGAAAAGAATGAGA+TGG | + | chr5_3:13436672-13436691 | Msa0800050:CDS | 35.0% | |
| TTCCTTCTTTCTCTTTCTCT+CGG | - | chr5_3:13436698-13436717 | None:intergenic | 35.0% | |
| AAAGAGAAAGAAGGAAGAGT+TGG | + | chr5_3:13436702-13436721 | Msa0800050:CDS | 35.0% | |
| CTGCTTCTTCTTCTGTGAAT+TGG | + | chr5_3:13435752-13435771 | Msa0800050:intron | 40.0% | |
| GCTTCTTCTTCTGTGAATTG+GGG | + | chr5_3:13435754-13435773 | Msa0800050:intron | 40.0% | |
| CAACCTGACGTAGGTATTTA+AGG | - | chr5_3:13435997-13436016 | None:intergenic | 40.0% | |
| GTCTTTAATCCTCCAGATCA+TGG | + | chr5_3:13436025-13436044 | Msa0800050:CDS | 40.0% | |
| ! | ACAATTGATGGTTGCTGTTG+AGG | + | chr5_3:13436075-13436094 | Msa0800050:CDS | 40.0% |
| TATGGCCAAGTGTATAAAGG+AGG | + | chr5_3:13436114-13436133 | Msa0800050:CDS | 40.0% | |
| TGTATAAAGGAGGCTTGGAA+TGG | + | chr5_3:13436124-13436143 | Msa0800050:CDS | 40.0% | |
| ATAAACTTGCCTCGGAAGAA+AGG | - | chr5_3:13436298-13436317 | None:intergenic | 40.0% | |
| AAGTCAGCATAAACTTGCCT+CGG | - | chr5_3:13436306-13436325 | None:intergenic | 40.0% | |
| ATCACGTCGAGCGTTATTTA+AGG | - | chr5_3:13436521-13436540 | None:intergenic | 40.0% | |
| GAAGAGTTGGATGCTGATAT+GGG | + | chr5_3:13436571-13436590 | Msa0800050:CDS | 40.0% | |
| AGGGAAAAAGAATGAGATGG+AGG | + | chr5_3:13436615-13436634 | Msa0800050:CDS | 40.0% | |
| ! | CATTCTTTTCAACAGCTCCT+TGG | - | chr5_3:13436669-13436688 | None:intergenic | 40.0% |
| !!! | TCTTCGTTTTGGTTTGCTCA+AGG | + | chr5_3:13436844-13436863 | Msa0800050:CDS | 40.0% |
| ! | GAGATAAAATCGGCTTCTTC+TGG | - | chr5_3:13437136-13437155 | None:intergenic | 40.0% |
| !! | CCATAACTGATGGATTGACA+CGG | - | chr5_3:13437300-13437319 | None:intergenic | 40.0% |
| GTAAAAGGTTGTCTGTTTCC+GGG | - | chr5_3:13437371-13437390 | None:intergenic | 40.0% | |
| GGTAAAAGGTTGTCTGTTTC+CGG | - | chr5_3:13437372-13437391 | None:intergenic | 40.0% | |
| CAGCCTGACGTAAGTATTTA+TGG | - | chr5_3:13437393-13437412 | None:intergenic | 40.0% | |
| GATGTCTTTAATCCTCCAGA+TGG | + | chr5_3:13436022-13436041 | Msa0800050:CDS | 40.0% | |
| TTTAATCCTCCAGATGGTGA+TGG | + | chr5_3:13437424-13437443 | Msa0800050:CDS | 40.0% | |
| TAAGGCCAAGTGTTTAAAGG+AGG | + | chr5_3:13437507-13437526 | Msa0800050:CDS | 40.0% | |
| TGTTTAAAGGAGGCTTCGAA+TGG | + | chr5_3:13437517-13437536 | Msa0800050:CDS | 40.0% | |
| !! | AACCTTTAACTTGCCGCTAA+AGG | + | chr5_3:13437540-13437559 | Msa0800050:CDS | 40.0% |
| !! | ACCTTTAACTTGCCGCTAAA+GGG | + | chr5_3:13437541-13437560 | Msa0800050:CDS | 40.0% |
| !! | TCAGGGCTTTATTCAATTCG+TGG | + | chr5_3:13437602-13437621 | Msa0800050:intron | 40.0% |
| !! | AGCAAGCCGTAACTTTTTCT+TGG | - | chr5_3:13437848-13437867 | None:intergenic | 40.0% |
| AATCCTTCGAGCATCTTGAA+AGG | - | chr5_3:13436449-13436468 | None:intergenic | 40.0% | |
| GAAGAGTTGGATGCTGATAT+GGG | + | chr5_3:13436571-13436590 | Msa0800050:CDS | 40.0% | |
| AGGGAAAAAGAATGAGATGG+AGG | + | chr5_3:13436615-13436634 | Msa0800050:CDS | 40.0% | |
| ! | CATTCTTTTCAACAGCTCCT+TGG | - | chr5_3:13436669-13436688 | None:intergenic | 40.0% |
| TGGGCTTCTTTCTCTTTGTT+TGG | - | chr5_3:13438242-13438261 | None:intergenic | 40.0% | |
| !! | TAACTGATGGATTGACACGG+CGG | - | chr5_3:13435898-13435917 | None:intergenic | 45.0% |
| GGATTGCGCTTCATAACTGA+TGG | - | chr5_3:13435911-13435930 | None:intergenic | 45.0% | |
| !! | TCAGGACCTCTAAAACGCAT+GGG | - | chr5_3:13435947-13435966 | None:intergenic | 45.0% |
| !! | ATCAGGACCTCTAAAACGCA+TGG | - | chr5_3:13435948-13435967 | None:intergenic | 45.0% |
| ! | TTAGAGGTCCTGATTTGACC+CGG | + | chr5_3:13435954-13435973 | Msa0800050:CDS | 45.0% |
| GTAAAAGGTTCTCTGTTGCC+GGG | - | chr5_3:13435975-13435994 | None:intergenic | 45.0% | |
| GGTAAAAGGTTCTCTGTTGC+CGG | - | chr5_3:13435976-13435995 | None:intergenic | 45.0% | |
| ! | ATACCTACGTCAGGTTGTCA+TGG | + | chr5_3:13436000-13436019 | Msa0800050:CDS | 45.0% |
| AATCCTCCAGATCATGGTGA+TGG | + | chr5_3:13436031-13436050 | Msa0800050:CDS | 45.0% | |
| TGTTGAGGCTGTCTATGAAG+AGG | + | chr5_3:13436090-13436109 | Msa0800050:CDS | 45.0% | |
| GGCTATGGCCAAGTGTATAA+AGG | + | chr5_3:13436111-13436130 | Msa0800050:CDS | 45.0% | |
| CCAAGCCTCCTTTATACACT+TGG | - | chr5_3:13436122-13436141 | None:intergenic | 45.0% | |
| CCAAGTGTATAAAGGAGGCT+TGG | + | chr5_3:13436119-13436138 | Msa0800050:CDS | 45.0% | |
| AACCTTCAACTTGCCGCTAA+AGG | + | chr5_3:13436147-13436166 | Msa0800050:CDS | 45.0% | |
| ACCTTCAACTTGCCGCTAAA+GGG | + | chr5_3:13436148-13436167 | Msa0800050:CDS | 45.0% | |
| ! | GGTTTCAAGTGTCGCATTGA+TGG | + | chr5_3:13436272-13436291 | Msa0800050:CDS | 45.0% |
| GGAAGAGTTGGATGCTGATA+TGG | + | chr5_3:13436570-13436589 | Msa0800050:CDS | 45.0% | |
| CTCTTCTTTCATCAGCTCCT+GGG | - | chr5_3:13436597-13436616 | None:intergenic | 45.0% | |
| CAGGAGCTGATGAAAGAAGA+GGG | + | chr5_3:13436596-13436615 | Msa0800050:CDS | 45.0% | |
| AGAATGAGATGGAGGCTGAT+AGG | + | chr5_3:13436623-13436642 | Msa0800050:CDS | 45.0% | |
| GAATGAGATGGAGGCTGATA+GGG | + | chr5_3:13436624-13436643 | Msa0800050:CDS | 45.0% | |
| TAGGGCCATCACAACTGATA+TGG | + | chr5_3:13436642-13436661 | Msa0800050:CDS | 45.0% | |
| AGGGCCATCACAACTGATAT+GGG | + | chr5_3:13436643-13436662 | Msa0800050:CDS | 45.0% | |
| TTGGCCCATATCAGTTGTGA+TGG | - | chr5_3:13436650-13436669 | None:intergenic | 45.0% | |
| ATCACAACTGATATGGGCCA+AGG | + | chr5_3:13436649-13436668 | Msa0800050:CDS | 45.0% | |
| GAGAAAGAAGGAAGAGTTGG+TGG | + | chr5_3:13436705-13436724 | Msa0800050:CDS | 45.0% | |
| !! | AAAGAAGGAAGAGTTGGTGG+AGG | + | chr5_3:13436708-13436727 | Msa0800050:CDS | 45.0% |
| TTTCATCAGCTCCTATGGCT+CGG | - | chr5_3:13436762-13436781 | None:intergenic | 45.0% | |
| ! | TCGCGTCTTCTTCTTCGTTT+TGG | + | chr5_3:13436833-13436852 | Msa0800050:CDS | 45.0% |
| CTCTCTCTCTCTCTCTCATT+TGG | + | chr5_3:13437072-13437091 | Msa0800050:intron | 45.0% | |
| ! | AATCGGCTTCTTCTGGCAAT+GGG | - | chr5_3:13437129-13437148 | None:intergenic | 45.0% |
| ! | AAATCGGCTTCTTCTGGCAA+TGG | - | chr5_3:13437130-13437149 | None:intergenic | 45.0% |
| TCTCCTCAATCGTCGCAAAT+GGG | + | chr5_3:13437154-13437173 | Msa0800050:CDS | 45.0% | |
| TTACCCATTTGCGACGATTG+AGG | - | chr5_3:13437160-13437179 | None:intergenic | 45.0% | |
| !! | TAACTGATGGATTGACACGG+CGG | - | chr5_3:13435898-13435917 | None:intergenic | 45.0% |
| CCGTGTCAATCCATCAGTTA+TGG | + | chr5_3:13435898-13435917 | Msa0800050:exon | 45.0% | |
| ATGATGCGCTCCATAACTGA+TGG | - | chr5_3:13437310-13437329 | None:intergenic | 45.0% | |
| ATACTTACGTCAGGCTGTCA+TGG | + | chr5_3:13437396-13437415 | Msa0800050:CDS | 45.0% | |
| !!! | TTTTGAGGCTGTCTTTCGAG+AGG | + | chr5_3:13437483-13437502 | Msa0800050:CDS | 45.0% |
| GGCTAAGGCCAAGTGTTTAA+AGG | + | chr5_3:13437504-13437523 | Msa0800050:CDS | 45.0% | |
| CGAAGCCTCCTTTAAACACT+TGG | - | chr5_3:13437515-13437534 | None:intergenic | 45.0% | |
| ACCCTTTAGCGGCAAGTTAA+AGG | - | chr5_3:13437545-13437564 | None:intergenic | 45.0% | |
| ! | GGTTTCAAGTGTCGCATTGA+TGG | + | chr5_3:13436272-13436291 | Msa0800050:CDS | 45.0% |
| AGAAACTTGCCTCGGAAGAA+AGG | - | chr5_3:13437700-13437719 | None:intergenic | 45.0% | |
| CGCAGGCCAAGAAAAAGTTA+CGG | + | chr5_3:13436407-13436426 | Msa0800050:intron | 45.0% | |
| GAGCATCTTGAAAGGCTTCT+CGG | - | chr5_3:13437873-13437892 | None:intergenic | 45.0% | |
| AAGCCTTTCAAGATGCTCGA+AGG | + | chr5_3:13437875-13437894 | Msa0800050:CDS | 45.0% | |
| GGAAGAGTTGGATGCTGATA+TGG | + | chr5_3:13436570-13436589 | Msa0800050:CDS | 45.0% | |
| CTCTTCTTTCATCAGCTCCT+GGG | - | chr5_3:13436597-13436616 | None:intergenic | 45.0% | |
| CAGGAGCTGATGAAAGAAGA+GGG | + | chr5_3:13436596-13436615 | Msa0800050:CDS | 45.0% | |
| AGAATGAGATGGAGGCTGAT+AGG | + | chr5_3:13436623-13436642 | Msa0800050:CDS | 45.0% | |
| GAATGAGATGGAGGCTGATA+GGG | + | chr5_3:13436624-13436643 | Msa0800050:CDS | 45.0% | |
| TAGGGCCATCACAACTGATA+TGG | + | chr5_3:13436642-13436661 | Msa0800050:CDS | 45.0% | |
| AGGGCCATCACAACTGATAT+GGG | + | chr5_3:13436643-13436662 | Msa0800050:CDS | 45.0% | |
| TTGGCCCATATCAGTTGTGA+TGG | - | chr5_3:13436650-13436669 | None:intergenic | 45.0% | |
| ATCACAACTGATATGGGCCA+AGG | + | chr5_3:13436649-13436668 | Msa0800050:CDS | 45.0% | |
| GAGAAAGAAGGAAGAGTTGG+TGG | + | chr5_3:13436705-13436724 | Msa0800050:CDS | 45.0% | |
| !! | AAAGAAGGAAGAGTTGGTGG+AGG | + | chr5_3:13436708-13436727 | Msa0800050:CDS | 45.0% |
| TCTTCTTTCATCAGCTCCGA+TGG | - | chr5_3:13438199-13438218 | None:intergenic | 45.0% | |
| CCTTGAGCAAAGCTAAACGC+AGG | - | chr5_3:13435689-13435708 | None:intergenic | 50.0% | |
| !! | CCTGCGTTTAGCTTTGCTCA+AGG | + | chr5_3:13435686-13435705 | Msa0800050:five_prime_UTR | 50.0% |
| AAGCGCAATCCGAAGTTCTC+TGG | + | chr5_3:13435920-13435939 | Msa0800050:CDS | 50.0% | |
| !! | CAGGACCTCTAAAACGCATG+GGG | - | chr5_3:13435946-13435965 | None:intergenic | 50.0% |
| CATCCATGACAACCTGACGT+AGG | - | chr5_3:13436006-13436025 | None:intergenic | 50.0% | |
| GGCTGTCTATGAAGAGGCTA+TGG | + | chr5_3:13436096-13436115 | Msa0800050:CDS | 50.0% | |
| ! | ACCCTTTAGCGGCAAGTTGA+AGG | - | chr5_3:13436152-13436171 | None:intergenic | 50.0% |
| ! | CATTGATGGCCTTTCTTCCG+AGG | + | chr5_3:13436286-13436305 | Msa0800050:CDS | 50.0% |
| CCTCTTCTTTCATCAGCTCC+TGG | - | chr5_3:13436598-13436617 | None:intergenic | 50.0% | |
| CCAGGAGCTGATGAAAGAAG+AGG | + | chr5_3:13436595-13436614 | Msa0800050:CDS | 50.0% | |
| GGCCGAGAGAAAGAGAAAGA+AGG | + | chr5_3:13436693-13436712 | Msa0800050:CDS | 50.0% | |
| !! | AAGAGTTGGTGGAGGCTGAT+AGG | + | chr5_3:13436716-13436735 | Msa0800050:CDS | 50.0% |
| !! | AGAGTTGGTGGAGGCTGATA+GGG | + | chr5_3:13436717-13436736 | Msa0800050:CDS | 50.0% |
| CTCTCCTCAATCGTCGCAAA+TGG | + | chr5_3:13437153-13437172 | Msa0800050:CDS | 50.0% | |
| TCAAATCAGGACCTCGGATG+GGG | - | chr5_3:13437348-13437367 | None:intergenic | 50.0% | |
| GTCAAATCAGGACCTCGGAT+GGG | - | chr5_3:13437349-13437368 | None:intergenic | 50.0% | |
| GTCTGTTTCCGGGTCAAATC+AGG | - | chr5_3:13437361-13437380 | None:intergenic | 50.0% | |
| ! | CATTGATGGCCTTTCTTCCG+AGG | + | chr5_3:13436286-13436305 | Msa0800050:CDS | 50.0% |
| TCTTCCGAGGCAAGTTTCTC+TGG | + | chr5_3:13437701-13437720 | Msa0800050:CDS | 50.0% | |
| ACGTCCAGAGAAACTTGCCT+CGG | - | chr5_3:13437708-13437727 | None:intergenic | 50.0% | |
| CCTCTTCTTTCATCAGCTCC+TGG | - | chr5_3:13436598-13436617 | None:intergenic | 50.0% | |
| CCAGGAGCTGATGAAAGAAG+AGG | + | chr5_3:13436595-13436614 | Msa0800050:CDS | 50.0% | |
| GGCCGAGAGAAAGAGAAAGA+AGG | + | chr5_3:13436693-13436712 | Msa0800050:CDS | 50.0% | |
| !! | AAGAGTTGGTGGAGGCTGAT+AGG | + | chr5_3:13436716-13436735 | Msa0800050:CDS | 50.0% |
| !! | AGAGTTGGTGGAGGCTGATA+GGG | + | chr5_3:13436717-13436736 | Msa0800050:CDS | 50.0% |
| TTTCATCAGCTCCGATGGCT+CGG | - | chr5_3:13438194-13438213 | None:intergenic | 50.0% | |
| AAGAAGACGCGATGAGCGAG+TGG | - | chr5_3:13435653-13435672 | None:intergenic | 55.0% | |
| AGCTAAACGCAGGACGACGT+GGG | - | chr5_3:13435679-13435698 | None:intergenic | 55.0% | |
| AAGCTAAACGCAGGACGACG+TGG | - | chr5_3:13435680-13435699 | None:intergenic | 55.0% | |
| ! | TCTGGCCCCATGCGTTTTAG+AGG | + | chr5_3:13435938-13435957 | Msa0800050:CDS | 55.0% |
| CTCTGTTGCCGGGTCAAATC+AGG | - | chr5_3:13435965-13435984 | None:intergenic | 55.0% | |
| GCACCATCACCATGATCTGG+AGG | - | chr5_3:13436037-13436056 | None:intergenic | 55.0% | |
| GCAGCACCATCACCATGATC+TGG | - | chr5_3:13436040-13436059 | None:intergenic | 55.0% | |
| TTGGATGCTGATATGGGCCC+AGG | + | chr5_3:13436577-13436596 | Msa0800050:CDS | 55.0% | |
| AAGAAGCTCAGCCGAGCCAT+AGG | + | chr5_3:13436748-13436767 | Msa0800050:CDS | 55.0% | |
| CAAATCAGGACCTCGGATGG+GGG | - | chr5_3:13437347-13437366 | None:intergenic | 55.0% | |
| GGTCAAATCAGGACCTCGGA+TGG | - | chr5_3:13437350-13437369 | None:intergenic | 55.0% | |
| ! | TCCGAGGTCCTGATTTGACC+CGG | + | chr5_3:13437350-13437369 | Msa0800050:CDS | 55.0% |
| TCCGGGTCAAATCAGGACCT+CGG | - | chr5_3:13437354-13437373 | None:intergenic | 55.0% | |
| GGCTGTCTTTCGAGAGGCTA+AGG | + | chr5_3:13437489-13437508 | Msa0800050:CDS | 55.0% | |
| TTGGATGCTGATATGGGCCC+AGG | + | chr5_3:13436577-13436596 | Msa0800050:CDS | 55.0% | |
| AAGAAGCTCAGCCGAGCCAT+CGG | + | chr5_3:13436748-13436767 | Msa0800050:CDS | 55.0% | |
| CGCATGGGGCCAGAGAACTT+CGG | - | chr5_3:13435932-13435951 | None:intergenic | 60.0% | |
| GGTGGAGGCTGATAGGGCTA+TGG | + | chr5_3:13436723-13436742 | Msa0800050:CDS | 60.0% | |
| CGGATGGGGGCAGAGAACTT+CGG | - | chr5_3:13437334-13437353 | None:intergenic | 60.0% | |
| AAGTTCTCTGCCCCCATCCG+AGG | + | chr5_3:13437334-13437353 | Msa0800050:CDS | 60.0% | |
| GCAGCACCATCACCATCTGG+AGG | - | chr5_3:13437433-13437452 | None:intergenic | 60.0% | |
| GCAGCAGCACCATCACCATC+TGG | - | chr5_3:13437436-13437455 | None:intergenic | 60.0% | |
| GGTGGAGGCTGATAGGGCTA+TGG | + | chr5_3:13436723-13436742 | Msa0800050:CDS | 60.0% | |
| TTGACACGGCGGCGCCCTTC+AGG | - | chr5_3:13435887-13435906 | None:intergenic | 70.0% | |
| TTGACACGGCGGCGCCCTTC+AGG | - | chr5_3:13435887-13435906 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 13435625 | 13438269 | 13435625 | ID=Msa0800050;Name=Msa0800050 |
| chr5_3 | mRNA | 13435625 | 13438269 | 13435625 | ID=Msa0800050-mRNA-1;Parent=Msa0800050;Name=Msa0800050-mRNA-1;_AED=0.29;_eAED=0.29;_QI=109|0.14|0.25|0.5|0.85|0.75|8|0|523 |
| chr5_3 | exon | 13435625 | 13435707 | 13435625 | ID=Msa0800050-mRNA-1:exon:5499;Parent=Msa0800050-mRNA-1 |
| chr5_3 | exon | 13435891 | 13436169 | 13435891 | ID=Msa0800050-mRNA-1:exon:5500;Parent=Msa0800050-mRNA-1 |
| chr5_3 | exon | 13436258 | 13436307 | 13436258 | ID=Msa0800050-mRNA-1:exon:5501;Parent=Msa0800050-mRNA-1 |
| chr5_3 | exon | 13436412 | 13436865 | 13436412 | ID=Msa0800050-mRNA-1:exon:5502;Parent=Msa0800050-mRNA-1 |
| chr5_3 | exon | 13437137 | 13437175 | 13437137 | ID=Msa0800050-mRNA-1:exon:5503;Parent=Msa0800050-mRNA-1 |
| chr5_3 | exon | 13437290 | 13437562 | 13437290 | ID=Msa0800050-mRNA-1:exon:5504;Parent=Msa0800050-mRNA-1 |
| chr5_3 | exon | 13437660 | 13437736 | 13437660 | ID=Msa0800050-mRNA-1:exon:5505;Parent=Msa0800050-mRNA-1 |
| chr5_3 | exon | 13437844 | 13438269 | 13437844 | ID=Msa0800050-mRNA-1:exon:5506;Parent=Msa0800050-mRNA-1 |
| chr5_3 | five_prime_UTR | 13435625 | 13435707 | 13435625 | ID=Msa0800050-mRNA-1:five_prime_utr;Parent=Msa0800050-mRNA-1 |
| chr5_3 | five_prime_UTR | 13435891 | 13435916 | 13435891 | ID=Msa0800050-mRNA-1:five_prime_utr;Parent=Msa0800050-mRNA-1 |
| chr5_3 | CDS | 13435917 | 13436169 | 13435917 | ID=Msa0800050-mRNA-1:cds;Parent=Msa0800050-mRNA-1 |
| chr5_3 | CDS | 13436258 | 13436307 | 13436258 | ID=Msa0800050-mRNA-1:cds;Parent=Msa0800050-mRNA-1 |
| chr5_3 | CDS | 13436412 | 13436865 | 13436412 | ID=Msa0800050-mRNA-1:cds;Parent=Msa0800050-mRNA-1 |
| chr5_3 | CDS | 13437137 | 13437175 | 13437137 | ID=Msa0800050-mRNA-1:cds;Parent=Msa0800050-mRNA-1 |
| chr5_3 | CDS | 13437290 | 13437562 | 13437290 | ID=Msa0800050-mRNA-1:cds;Parent=Msa0800050-mRNA-1 |
| chr5_3 | CDS | 13437660 | 13437736 | 13437660 | ID=Msa0800050-mRNA-1:cds;Parent=Msa0800050-mRNA-1 |
| chr5_3 | CDS | 13437844 | 13438269 | 13437844 | ID=Msa0800050-mRNA-1:cds;Parent=Msa0800050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
