AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0999120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0999120 MtrunA17_Chr6g0485261 97.080 137 4 0 1 137 862 998 2.41e-92 289
Msa0999120 MtrunA17_Chr7g0269931 57.246 138 54 3 2 137 995 1129 9.59e-41 144
Msa0999120 MtrunA17_Chr4g0062701 45.985 137 70 1 1 137 632 764 2.70e-35 129
Msa0999120 MtrunA17_Chr1g0203461 49.254 134 60 2 5 136 770 897 4.46e-33 122
Msa0999120 MtrunA17_Chr5g0399431 44.776 134 69 2 7 136 264 396 4.57e-33 121
Msa0999120 MtrunA17_Chr1g0168681 40.594 101 60 0 37 137 766 866 5.25e-18 79.3
Msa0999120 MtrunA17_Chr5g0428751 30.769 130 84 2 9 137 409 533 9.61e-15 70.1
Msa0999120 MtrunA17_Chr4g0047451 28.689 122 81 2 17 137 413 529 2.61e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0999120 AT3G24495.1 75.714 140 31 1 1 137 811 950 5.49e-71 231
Msa0999120 AT4G02070.2 55.474 137 56 3 3 137 1044 1177 7.83e-39 139
Msa0999120 AT4G02070.1 55.474 137 56 3 3 137 1047 1180 7.83e-39 139
Msa0999120 AT3G18524.1 45.255 137 71 1 1 137 631 763 9.65e-34 124
Msa0999120 AT4G25540.1 48.148 135 56 3 12 136 783 913 9.74e-32 119
Msa0999120 AT4G17380.1 43.182 132 69 1 5 136 524 649 1.81e-30 115
Msa0999120 AT4G17380.2 43.182 132 69 1 5 136 524 649 2.15e-30 115
Msa0999120 AT3G24320.1 41.667 108 63 0 37 144 765 872 3.90e-19 83.2
Msa0999120 AT3G24320.2 41.284 109 64 0 36 144 519 627 2.54e-18 80.9
Msa0999120 AT3G24495.2 60.714 56 19 1 1 53 811 866 4.23e-17 77.4
Msa0999120 AT5G54090.1 33.333 126 78 2 13 137 419 539 1.89e-16 75.5
Msa0999120 AT3G20475.1 36.283 113 66 2 18 130 552 658 5.53e-16 73.9
Msa0999120 AT3G20475.3 36.283 113 66 2 18 130 552 658 6.24e-16 73.9
Msa0999120 AT3G20475.2 36.283 113 66 2 18 130 552 658 6.54e-16 73.9
Msa0999120 AT1G65070.4 31.206 141 84 4 5 137 365 500 4.29e-12 62.8
Msa0999120 AT1G65070.2 31.206 141 84 4 5 137 365 500 4.64e-12 62.8
Msa0999120 AT1G65070.1 31.206 141 84 4 5 137 365 500 4.81e-12 62.8
Msa0999120 AT1G65070.3 31.206 141 84 4 5 137 365 500 5.42e-12 62.4

Find 247 sgRNAs with CRISPR-Local

Find 385 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAATTGAGGATTTGGAAAT+TGG 0.166218 6_4:-80806143 Msa0999120:five_prime_UTR
TCACTCGAAAGGATAATTTA+AGG 0.174290 6_4:-80803841 Msa0999120:five_prime_UTR
ACCAGTAAAATTTGTGAAAA+TGG 0.206837 6_4:-80806886 Msa0999120:five_prime_UTR
GTTCGGATCAGCGGTGATTT+TGG 0.207397 6_4:+80806363 None:intergenic
TTCCATACCTTGCGTCTTGC+TGG 0.210499 6_4:-80805576 Msa0999120:five_prime_UTR
TTTAGAAAATTCTCTTTAAA+TGG 0.212617 6_4:-80804683 Msa0999120:intron
TCAGCTCTCAAGAGTTTCTT+TGG 0.231878 6_4:+80805378 None:intergenic
CGGATTGCAGGTTGCACTTA+TGG 0.237284 6_4:-80801612 Msa0999120:three_prime_UTR
CATCTGGAAAGCGGCTTCTT+AGG 0.241950 6_4:-80803371 Msa0999120:five_prime_UTR
GTGGCTTGTTTATTCTTGTT+TGG 0.244060 6_4:-80801232 Msa0999120:three_prime_UTR
GCAATATGAGACACAATTTC+AGG 0.255684 6_4:+80803270 None:intergenic
TTACTTGTGGCTTAATCAAT+AGG 0.267082 6_4:-80806617 Msa0999120:five_prime_UTR
TTGTACTTTAACTGAATTAC+TGG 0.271707 6_4:-80805709 Msa0999120:five_prime_UTR
TACCTGTCTGGCTGTTATTA+TGG 0.274141 6_4:-80802614 Msa0999120:CDS
TTATCCATACCAGGTTTATA+AGG 0.280087 6_4:-80803601 Msa0999120:five_prime_UTR
AAATGCTTTCTCAGCTTCTT+TGG 0.283229 6_4:+80804703 None:intergenic
TGGGGCTTGAAATATGTTAA+AGG 0.284708 6_4:-80805300 Msa0999120:five_prime_UTR
TCTTCGTAAGCTTCCAGATT+TGG 0.287142 6_4:-80803241 Msa0999120:five_prime_UTR
AACTAGTTCCTGATCTTGTT+TGG 0.297603 6_4:+80801676 None:intergenic
ATAATCTTGCAACTGCAATA+TGG 0.298580 6_4:-80805320 Msa0999120:five_prime_UTR
AGATAAGATTAACTTGGTTT+GGG 0.299623 6_4:-80805814 Msa0999120:five_prime_UTR
AAGATAAGATTAACTTGGTT+TGG 0.300126 6_4:-80805815 Msa0999120:five_prime_UTR
ATGGTTTAAATAAAATATTT+AGG 0.309876 6_4:-80805552 Msa0999120:five_prime_UTR
ATCTTACAACAGGGTGAGTT+TGG 0.313353 6_4:+80806288 None:intergenic
CTTGTTATCCTTGATGAATT+AGG 0.318697 6_4:-80802078 Msa0999120:CDS
TGGCTTGTTTATTCTTGTTT+GGG 0.324359 6_4:-80801231 Msa0999120:three_prime_UTR
AAAACTTAAGCAAAATCATT+TGG 0.325602 6_4:+80806222 None:intergenic
CCCTATCTTACTGCCCTTGT+TGG 0.326443 6_4:-80803175 Msa0999120:five_prime_UTR
TTAATCAAGAGTGTGTAATT+TGG 0.327232 6_4:-80806075 Msa0999120:five_prime_UTR
TAACTTGTGGCTTAATCAAC+AGG 0.333351 6_4:-80807047 None:intergenic
TTATAAGGGTTGCCTCAAAA+TGG 0.333696 6_4:-80803586 Msa0999120:five_prime_UTR
GATGCGTCATGTTCTGCTTT+GGG 0.334144 6_4:-80804993 Msa0999120:five_prime_UTR
AAAGATTTCTAGATTTATAT+AGG 0.335192 6_4:+80803554 None:intergenic
ATGCTGAAGGAATTAATAAT+AGG 0.341205 6_4:-80803323 Msa0999120:five_prime_UTR
GCTCTCAAGGCCAGCAAATA+AGG 0.341263 6_4:+80805431 None:intergenic
TACTTGTGGCTTAATCAATA+GGG 0.344531 6_4:-80806616 Msa0999120:five_prime_UTR
CTGTGCCAGTTTAGGTGCTT+GGG 0.347492 6_4:-80805672 Msa0999120:five_prime_UTR
ACATGACGCATCATCATCTA+TGG 0.347807 6_4:+80805004 None:intergenic
CACTCGAAAGGATAATTTAA+GGG 0.350011 6_4:-80803840 Msa0999120:five_prime_UTR
TATATAAATCTAGAAATCTT+TGG 0.357312 6_4:-80803552 Msa0999120:five_prime_UTR
TTCCTATACCGGCTTGCCTC+TGG 0.357602 6_4:-80801653 Msa0999120:three_prime_UTR
TAATTTAGTGAACGATTTGT+TGG 0.360107 6_4:-80806043 Msa0999120:five_prime_UTR
TAATCTTGCAACTGCAATAT+GGG 0.360842 6_4:-80805319 Msa0999120:five_prime_UTR
TGGTCGGAGGGAGTTTATTT+CGG 0.362919 6_4:-80805790 Msa0999120:five_prime_UTR
ATTTGTGTCTGTGCCAGTTT+AGG 0.367644 6_4:-80805680 Msa0999120:five_prime_UTR
GATAACTGTGTTACTTCATC+TGG 0.369132 6_4:-80803387 Msa0999120:five_prime_UTR
ACATATTTCAATGTTCAATC+TGG 0.372246 6_4:-80806847 Msa0999120:five_prime_UTR
TGTATTGTGAATTGAGGATT+TGG 0.374415 6_4:-80806150 Msa0999120:five_prime_UTR
ACCAACAAGGGCAGTAAGAT+AGG 0.377519 6_4:+80803174 None:intergenic
TCTGTGCCAGTTTAGGTGCT+TGG 0.379439 6_4:-80805673 Msa0999120:five_prime_UTR
TCCGGAGAGCTACGGATTGC+AGG 0.382813 6_4:-80801624 Msa0999120:three_prime_UTR
AGCAAGTATTGTGAGTGTTT+CGG 0.384001 6_4:+80802973 None:intergenic
CCAAGTAATAGTTCCAAATC+TGG 0.384149 6_4:+80803228 None:intergenic
CCAGATTTGGAACTATTACT+TGG 0.384918 6_4:-80803228 Msa0999120:five_prime_UTR
AACACCCCAAGCACCTAAAC+TGG 0.386758 6_4:+80805667 None:intergenic
AGCAAATGCTTGAATTAGTT+AGG 0.387627 6_4:+80801078 None:intergenic
ATCATATTTGATAGCCAGTT+AGG 0.391683 6_4:+80805268 None:intergenic
AAAGGATTAAATCTCCTAAC+TGG 0.392404 6_4:-80805282 Msa0999120:five_prime_UTR
ATCCTTGATAACTTTCATAT+AGG 0.393702 6_4:+80805037 None:intergenic
TTTCAAATCTTCATGAAGAA+TGG 0.394863 6_4:-80801487 Msa0999120:three_prime_UTR
CTAGTGTATGGTGCTGTCTC+TGG 0.395933 6_4:-80805761 Msa0999120:five_prime_UTR
TTTCGGTCCTGTCTAGTGTA+TGG 0.397951 6_4:-80805773 Msa0999120:five_prime_UTR
CCATTTGCTCTTGGTGAGAC+TGG 0.398517 6_4:-80802751 Msa0999120:CDS
TGATGCGTCATGTTCTGCTT+TGG 0.402454 6_4:-80804994 Msa0999120:five_prime_UTR
ATGGTTATTTAGTGTATGTT+CGG 0.403330 6_4:+80806346 None:intergenic
CTAGAGATGTAGAGTGCAAC+AGG 0.403846 6_4:-80801348 Msa0999120:three_prime_UTR
TCGCCAAGGATCATGTCATT+TGG 0.404349 6_4:+80802715 None:intergenic
TAGTACATCAATGCAATTGA+TGG 0.407084 6_4:+80802904 None:intergenic
GAAAAGGGTGATCTTACAAC+AGG 0.408056 6_4:+80806278 None:intergenic
CGTTCATATATAATTTCCTT+GGG 0.410145 6_4:+80804834 None:intergenic
CATTGTGGTTATACTACAAT+AGG 0.412138 6_4:-80801131 Msa0999120:three_prime_UTR
AGGTCGCTGTAGTAAATCTT+CGG 0.412743 6_4:+80805451 None:intergenic
TACCTTGCGTCTTGCTGGGA+TGG 0.412812 6_4:-80805571 Msa0999120:five_prime_UTR
CACCCATTTGGTTAAAATGA+AGG 0.416079 6_4:+80806250 None:intergenic
AAGCTGCAACGTGTAGCTTC+TGG 0.418036 6_4:+80806415 None:intergenic
GCGTTCATATATAATTTCCT+TGG 0.421583 6_4:+80804833 None:intergenic
TCCATACCTTGCGTCTTGCT+GGG 0.422140 6_4:-80805575 Msa0999120:five_prime_UTR
TATCCATACCAGGTTTATAA+GGG 0.422687 6_4:-80803600 Msa0999120:five_prime_UTR
GCTTGCCTCTGGAGCATGTC+CGG 0.423670 6_4:-80801642 Msa0999120:three_prime_UTR
ACTACAGCGACCTTATTTGC+TGG 0.426744 6_4:-80805441 Msa0999120:five_prime_UTR
GAAACACTACAGAAGGTATC+AGG 0.427042 6_4:-80805213 Msa0999120:five_prime_UTR
CTTAAGCAAGATCATACAAA+AGG 0.430336 6_4:+80806751 None:intergenic
TTACGGCATCCATTTGCTCT+TGG 0.431817 6_4:-80802760 Msa0999120:CDS
GTGCGTGTTCCGCATATATA+CGG 0.437867 6_4:-80805618 Msa0999120:five_prime_UTR
TAAAATGAAGGGTAAAGAAA+AGG 0.438090 6_4:+80806262 None:intergenic
TCTGGCTGTTATTATGGCCC+AGG 0.438091 6_4:-80802608 Msa0999120:intron
TGCTCAAAATGAAGGGATTA+CGG 0.439720 6_4:-80802777 Msa0999120:exon
ATTTCTAGATTTATATAGGT+TGG 0.440815 6_4:+80803558 None:intergenic
ATGTGCACGGGATTTAGATC+TGG 0.441570 6_4:-80806116 Msa0999120:five_prime_UTR
TGCAGTTGCAAGATTATAGT+AGG 0.445059 6_4:+80805326 None:intergenic
GGTCGCTGTAGTAAATCTTC+GGG 0.445510 6_4:+80805452 None:intergenic
TTCCTGATCTTGTTTGGAAA+GGG 0.445769 6_4:+80801682 None:intergenic
ATTCCTTCAGCATCTTTCAA+TGG 0.446375 6_4:+80803333 None:intergenic
AGGATCATGTCATTTGGAAT+AGG 0.450282 6_4:+80802721 None:intergenic
CTCCAGAGGCAAGCCGGTAT+AGG 0.450586 6_4:+80801651 None:intergenic
AAAATCAATGACATGGGTAA+TGG 0.452679 6_4:+80805076 None:intergenic
CCTCGCACGATGCTTCTGAC+AGG 0.454092 6_4:-80802673 Msa0999120:CDS
CTTGGTTTGGGGTGGTCGGA+GGG 0.456375 6_4:-80805802 Msa0999120:five_prime_UTR
AACTGTGAACATTGCTTCAA+AGG 0.457861 6_4:-80801573 Msa0999120:three_prime_UTR
TCTGCTCTTGGTGGACTGAT+AGG 0.461211 6_4:-80803759 Msa0999120:five_prime_UTR
TTCTTGATGTATGTGATGAA+TGG 0.461702 6_4:-80805849 Msa0999120:five_prime_UTR
CAACAGATGAAAATATCAAT+TGG 0.461934 6_4:-80801545 Msa0999120:three_prime_UTR
AGTGTGTAATCTGATTCATT+TGG 0.462741 6_4:-80805892 Msa0999120:five_prime_UTR
CATTTGGAGACACACCCATT+TGG 0.463017 6_4:+80806238 None:intergenic
TAGATACATTGGTCTGTTTG+CGG 0.463023 6_4:-80801403 Msa0999120:three_prime_UTR
GAAAGCGGCTTCTTAGGAAC+TGG 0.463529 6_4:-80803365 Msa0999120:five_prime_UTR
TAGATGAGGTCCTTCAGAAT+GGG 0.465325 6_4:-80803629 Msa0999120:five_prime_UTR
ATAGTAAATTATGCGATTGA+AGG 0.465657 6_4:-80801195 Msa0999120:three_prime_UTR
CCAGTCTCACCAAGAGCAAA+TGG 0.468441 6_4:+80802751 None:intergenic
ATTTAGCTTTGCTTTAAAGT+TGG 0.468670 6_4:+80805189 None:intergenic
GCTACTTTATTCCCTAGACT+TGG 0.469339 6_4:-80805110 Msa0999120:five_prime_UTR
ACCTTCTGTAGTGTTTCAGC+TGG 0.470489 6_4:+80805219 None:intergenic
ATGCGTCATGTTCTGCTTTG+GGG 0.471188 6_4:-80804992 Msa0999120:five_prime_UTR
AGCGAGGATGGTGGAAAAGC+AGG 0.472404 6_4:-80803525 Msa0999120:intron
AGGATTTGGAATGATGTGTA+TGG 0.473479 6_4:-80806661 Msa0999120:five_prime_UTR
CACCTATATGAAAGTTATCA+AGG 0.476231 6_4:-80805039 Msa0999120:five_prime_UTR
CTGAAGGTTATCCTCAACTA+AGG 0.477200 6_4:+80805143 None:intergenic
TATTCTTGTGATAGACATCA+AGG 0.477306 6_4:+80801457 None:intergenic
TATCCTTGATGAATTAGGTC+GGG 0.479062 6_4:-80802073 Msa0999120:CDS
TCTGCTTCTGTAATTACTTG+TGG 0.479834 6_4:-80806630 Msa0999120:five_prime_UTR
GAAATCACGTTATCTGCTCT+TGG 0.480437 6_4:-80803771 Msa0999120:five_prime_UTR
TTTCAGGGGAAGCTATTAGA+TGG 0.480963 6_4:+80803286 None:intergenic
TACCCTTTCCAAACAAGATC+AGG 0.483605 6_4:-80801684 Msa0999120:three_prime_UTR
CAACCCTTATAAACCTGGTA+TGG 0.486371 6_4:+80803597 None:intergenic
TTGCAGGTTGCACTTATGGC+TGG 0.487304 6_4:-80801608 Msa0999120:three_prime_UTR
GATATCATCTTCACACGCCT+TGG 0.488497 6_4:-80802385 Msa0999120:CDS
ACTTGGTTTGGGGTGGTCGG+AGG 0.488993 6_4:-80805803 Msa0999120:five_prime_UTR
TTCTTTGGAACCAATGCTGC+GGG 0.490198 6_4:+80805393 None:intergenic
AAAATGAAGGGTAAAGAAAA+GGG 0.491105 6_4:+80806263 None:intergenic
GGCCATAATAACAGCCAGAC+AGG 0.493847 6_4:+80802612 None:intergenic
ACCTGCAATCCGTAGCTCTC+CGG 0.497939 6_4:+80801623 None:intergenic
GTTTGGATTCACATTGAGAA+TGG 0.499316 6_4:-80806467 Msa0999120:five_prime_UTR
ATTCCGACATCTGATTGAAA+AGG 0.500177 6_4:-80801815 Msa0999120:exon
CTTGATAACTTTCATATAGG+TGG 0.502215 6_4:+80805040 None:intergenic
TAAATTTATACTGATTTCCT+CGG 0.502740 6_4:-80801290 Msa0999120:three_prime_UTR
GTTCCTGATCTTGTTTGGAA+AGG 0.503305 6_4:+80801681 None:intergenic
GAGCAGATAACGTGATTTCA+CGG 0.503954 6_4:+80803775 None:intergenic
CCAACAAGGGCAGTAAGATA+GGG 0.504056 6_4:+80803175 None:intergenic
AGGTCATCTGAATAGATTGA+TGG 0.514484 6_4:-80803739 Msa0999120:intron
TGGTAAAGAAAATATTGAAA+CGG 0.515566 6_4:-80803155 Msa0999120:five_prime_UTR
TGCAAATTCTTGTTAGCGGA+TGG 0.518119 6_4:+80801761 None:intergenic
ATGATCCTTGGCGAGAATGA+AGG 0.518625 6_4:-80802706 Msa0999120:CDS
TGTTGGCAATATGATGTGAA+TGG 0.518664 6_4:-80806026 Msa0999120:five_prime_UTR
ACTGATGTAGCCCGCAGCAT+TGG 0.519883 6_4:-80805403 Msa0999120:five_prime_UTR
AGCACCTGTGCTCAAAATGA+AGG 0.520226 6_4:-80802785 Msa0999120:exon
TCCCAGCAAGACGCAAGGTA+TGG 0.520834 6_4:+80805574 None:intergenic
AGATTTGTTGATGTAATGAA+TGG 0.520878 6_4:-80806997 Msa0999120:five_prime_UTR
GATTTCACGGTGAATCACTT+TGG 0.520935 6_4:+80803788 None:intergenic
ACCCATTTGGTTAAAATGAA+GGG 0.523652 6_4:+80806251 None:intergenic
TATGAAAGATAAGATTAACT+TGG 0.524627 6_4:-80805820 Msa0999120:five_prime_UTR
GAATTGTGTTCTTTCAGTTG+TGG 0.526845 6_4:-80802407 Msa0999120:CDS
CTAGATGAGGTCCTTCAGAA+TGG 0.527326 6_4:-80803630 Msa0999120:five_prime_UTR
ATTCCAAATGACATGATCCT+TGG 0.529480 6_4:-80802718 Msa0999120:CDS
CAGTCTTCAATCTGAAACGT+TGG 0.529866 6_4:-80806531 Msa0999120:five_prime_UTR
AGTGATTTAATTCACTCGAA+AGG 0.531383 6_4:-80803852 Msa0999120:five_prime_UTR
TTTCATGTGGAACTATGTCT+AGG 0.532162 6_4:-80802856 Msa0999120:five_prime_UTR
TTAACTTGGTTTGGGGTGGT+CGG 0.532692 6_4:-80805806 Msa0999120:five_prime_UTR
ATCTTTGGCAATAGCGAGGA+TGG 0.534732 6_4:-80803537 Msa0999120:five_prime_UTR
GATGTAGAGTGCAACAGGTA+GGG 0.537127 6_4:-80801343 Msa0999120:three_prime_UTR
CATGCCTAAAATCAATGACA+TGG 0.539076 6_4:+80805069 None:intergenic
ATCCTTGATGAATTAGGTCG+GGG 0.540679 6_4:-80802072 Msa0999120:CDS
GCTTCTGACAGGGCCAAACA+TGG 0.541218 6_4:-80802662 Msa0999120:CDS
TGAGGCAACCCTTATAAACC+TGG 0.542198 6_4:+80803592 None:intergenic
CTACTTTATTCCCTAGACTT+GGG 0.543487 6_4:-80805109 Msa0999120:five_prime_UTR
TGGGGACATTTATCCATACC+AGG 0.550123 6_4:-80803610 Msa0999120:five_prime_UTR
AGGAGTCAATTGAAGTGTTG+TGG 0.551700 6_4:+80803911 None:intergenic
ACATCAGTGAACAGCTCTCA+AGG 0.553295 6_4:+80805418 None:intergenic
GACATGCTCCAGAGGCAAGC+CGG 0.553896 6_4:+80801645 None:intergenic
TTCTGTACACTCAATAAAGA+AGG 0.555038 6_4:+80802137 None:intergenic
ATAAGTACAAGTAATGATAG+TGG 0.555334 6_4:-80802808 Msa0999120:five_prime_UTR
TATGCGGTCGATCACTGACT+TGG 0.556182 6_4:-80803889 Msa0999120:five_prime_UTR
ATCACGTTATCTGCTCTTGG+TGG 0.556374 6_4:-80803768 Msa0999120:five_prime_UTR
CAATATGAGACACAATTTCA+GGG 0.558536 6_4:+80803271 None:intergenic
TTCCCCGACCTAATTCATCA+AGG 0.560248 6_4:+80802070 None:intergenic
CTCGCACGATGCTTCTGACA+GGG 0.560352 6_4:-80802672 Msa0999120:CDS
AACTAATTCAAGCATTTGCT+AGG 0.563309 6_4:-80801075 None:intergenic
GACAGCACCATACACTAGAC+AGG 0.565329 6_4:+80805766 None:intergenic
GATGTCTATCACAAGAATAG+AGG 0.565644 6_4:-80801453 Msa0999120:three_prime_UTR
GATAAGATTAACTTGGTTTG+GGG 0.568525 6_4:-80805813 Msa0999120:five_prime_UTR
GCACGGGATTTAGATCTGGT+TGG 0.569883 6_4:-80806112 Msa0999120:five_prime_UTR
GCCCGCCTTCATTCTCGCCA+AGG 0.570412 6_4:+80802701 None:intergenic
AAGATTAACTTGGTTTGGGG+TGG 0.570676 6_4:-80805810 Msa0999120:five_prime_UTR
TCAACATTGGTAATAACTTG+TGG 0.571363 6_4:-80805925 Msa0999120:five_prime_UTR
GAAATTGGAATTATGTGCAC+GGG 0.571729 6_4:-80806128 Msa0999120:five_prime_UTR
GCCTGCCATGATTCTATCTG+TGG 0.571781 6_4:+80802360 None:intergenic
AGATGTAGAGTGCAACAGGT+AGG 0.572096 6_4:-80801344 Msa0999120:three_prime_UTR
TTAAGCAAGATCATACAAAA+GGG 0.572154 6_4:+80806752 None:intergenic
TTATCCTTGATGAATTAGGT+CGG 0.572163 6_4:-80802074 Msa0999120:CDS
GATGTTTGTATTGTGAATTG+AGG 0.575066 6_4:-80806156 Msa0999120:five_prime_UTR
TTACTTGTACTTATTGACGT+TGG 0.576079 6_4:+80802817 None:intergenic
GATAAATGTCCCCATTCTGA+AGG 0.577149 6_4:+80803619 None:intergenic
ACGTTGGCACTAACTATGAC+AGG 0.577173 6_4:+80802833 None:intergenic
TGATTCTATCTGTGGCTCCA+AGG 0.577889 6_4:+80802368 None:intergenic
TGCGTCATGTTCTGCTTTGG+GGG 0.580650 6_4:-80804991 Msa0999120:five_prime_UTR
GCTATCAAATATGATTTGAG+AGG 0.582829 6_4:-80805260 Msa0999120:five_prime_UTR
GGAAATTGGAATTATGTGCA+CGG 0.583232 6_4:-80806129 Msa0999120:five_prime_UTR
TTAGTGTATGTTCGGATCAG+CGG 0.583506 6_4:+80806354 None:intergenic
GGAGCATGTCCGGAGAGCTA+CGG 0.584126 6_4:-80801632 Msa0999120:three_prime_UTR
GCCACAGATAGAATCATGGC+AGG 0.585562 6_4:-80802361 Msa0999120:CDS
TCCAGCTGAAACACTACAGA+AGG 0.587357 6_4:-80805220 Msa0999120:five_prime_UTR
CAACACTGGCATATCAACAT+TGG 0.588394 6_4:-80805938 Msa0999120:five_prime_UTR
AGTAGCTGTTATCAATCTGA+AGG 0.589400 6_4:+80805127 None:intergenic
TCCTTGGCGAGAATGAAGGC+GGG 0.589673 6_4:-80802702 Msa0999120:CDS
TGGAGCCACAGATAGAATCA+TGG 0.594387 6_4:-80802365 Msa0999120:CDS
ATCCTTGGCGAGAATGAAGG+CGG 0.599023 6_4:-80802703 Msa0999120:CDS
GGATTTGGAATGATGTGTAT+GGG 0.608242 6_4:-80806660 Msa0999120:five_prime_UTR
TGTGAATCCAAACATACACT+TGG 0.609403 6_4:+80806477 None:intergenic
AAGGGTTGCCTCAAAATGGA+TGG 0.610093 6_4:-80803582 Msa0999120:five_prime_UTR
CCACGTTACAATGCAACACA+TGG 0.610662 6_4:-80801732 Msa0999120:three_prime_UTR
GCACCTGTGCTCAAAATGAA+GGG 0.611305 6_4:-80802784 Msa0999120:exon
GAGATGCAAATTCTTGTTAG+CGG 0.611486 6_4:+80801757 None:intergenic
TGTGCCAGTTTAGGTGCTTG+GGG 0.612804 6_4:-80805671 Msa0999120:five_prime_UTR
TCTCTGGCTAGATTTAGCTA+TGG 0.614766 6_4:-80805745 Msa0999120:five_prime_UTR
AACCATCCCAGCAAGACGCA+AGG 0.615774 6_4:+80805569 None:intergenic
ATCTGGTTGGAAATAGCTCG+TGG 0.616245 6_4:-80806099 Msa0999120:five_prime_UTR
AATCTTGCAACTGCAATATG+GGG 0.616588 6_4:-80805318 Msa0999120:five_prime_UTR
GAATTCATCAACAGAATCTG+AGG 0.618126 6_4:+80805348 None:intergenic
GGTTTATAAAGAATATCTTG+AGG 0.621214 6_4:+80801099 None:intergenic
AACTTGTGGCTTAATCAACA+GGG 0.622332 6_4:-80807046 None:intergenic
GTGTTACTTCATCTGGAAAG+CGG 0.623048 6_4:-80803380 Msa0999120:five_prime_UTR
CTATCAAATATGATTTGAGA+GGG 0.625811 6_4:-80805259 Msa0999120:five_prime_UTR
AATTAATAATAGGCTTGATG+TGG 0.629197 6_4:-80803313 Msa0999120:five_prime_UTR
AAGTCAGTGATCGACCGCAT+AGG 0.633221 6_4:+80803891 None:intergenic
GCTCTCCGGACATGCTCCAG+AGG 0.634093 6_4:+80801637 None:intergenic
GAAAGAACACAATTCTCGCA+CGG 0.639273 6_4:+80802415 None:intergenic
AACAAAACCACCTGTCATCG+TGG 0.642421 6_4:-80806391 Msa0999120:five_prime_UTR
AGATGAGGTCCTTCAGAATG+GGG 0.642652 6_4:-80803628 Msa0999120:five_prime_UTR
TTTCTTTGGAACCAATGCTG+CGG 0.643395 6_4:+80805392 None:intergenic
TGTCCATTGAAAGATGCTGA+AGG 0.643808 6_4:-80803336 Msa0999120:five_prime_UTR
CTTCTGACAGGGCCAAACAT+GGG 0.644124 6_4:-80802661 Msa0999120:CDS
ATGCCTAAAATCAATGACAT+GGG 0.644169 6_4:+80805070 None:intergenic
CCTGTCAGAAGCATCGTGCG+AGG 0.646554 6_4:+80802673 None:intergenic
TTTGGCAATAGCGAGGATGG+TGG 0.651475 6_4:-80803534 Msa0999120:five_prime_UTR
TGTAGCTTCTGGCAAAATCG+TGG 0.651571 6_4:+80806426 None:intergenic
CCATGTGTTGCATTGTAACG+TGG 0.653392 6_4:+80801732 None:intergenic
ATGAAGCACATACACAACAC+TGG 0.656826 6_4:-80805952 Msa0999120:five_prime_UTR
AAGTCTTACAGCATATGCAA+TGG 0.657089 6_4:+80802026 None:intergenic
AGAAATCTTTGGCAATAGCG+AGG 0.662140 6_4:-80803541 Msa0999120:five_prime_UTR
CTGACAGGGCCAAACATGGG+TGG 0.662756 6_4:-80802658 Msa0999120:CDS
ACACAGGTGCCGTATATATG+CGG 0.675285 6_4:+80805609 None:intergenic
AATATGAGACACAATTTCAG+GGG 0.688820 6_4:+80803272 None:intergenic
CAGGTGTTCTTTAATCACCG+AGG 0.704882 6_4:+80801273 None:intergenic
AAAAGGGTGATCTTACAACA+GGG 0.706488 6_4:+80806279 None:intergenic
GAAATTATATATGAACGCAG+AGG 0.710487 6_4:-80804828 Msa0999120:intron
ATGGAAAACGAAAACAACAC+AGG 0.713804 6_4:+80805593 None:intergenic
CACTTCAATTGACTCCTATG+CGG 0.716062 6_4:-80803905 Msa0999120:five_prime_UTR
AGGAGTTGCAGAATGCATTG+TGG 0.716204 6_4:-80801175 Msa0999120:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGGTTTAAATAAAATATTT+AGG - chr6_4:80802558-80802577 Msa0999120:intron 10.0%
!!! AATTTAATAACAAACATTTT+GGG - chr6_4:80803613-80803632 Msa0999120:five_prime_UTR 10.0%
!!! TGAAAAAAATTAGATCTTTT+TGG - chr6_4:80801385-80801404 Msa0999120:three_prime_UTR 15.0%
!! TTTAGAAAATTCTCTTTAAA+TGG - chr6_4:80803427-80803446 Msa0999120:intron 15.0%
!!! CAATTTAATAACAAACATTT+TGG - chr6_4:80803612-80803631 Msa0999120:five_prime_UTR 15.0%
!!! ATTTAATAACAAACATTTTG+GGG - chr6_4:80803614-80803633 Msa0999120:five_prime_UTR 15.0%
!!! AAAGATTTCTAGATTTATAT+AGG + chr6_4:80804559-80804578 None:intergenic 15.0%
!! TATATAAATCTAGAAATCTT+TGG - chr6_4:80804558-80804577 Msa0999120:intron 15.0%
!!! TTAAATGATATTTTTGATTC+TGG - chr6_4:80806137-80806156 Msa0999120:five_prime_UTR 15.0%
!!! TAATCTGATTCGTTTTTTAA+TGG - chr6_4:80801089-80801108 Msa0999120:three_prime_UTR 20.0%
!!! TTTTTTTTCATTTGAGAAAG+TGG - chr6_4:80801531-80801550 Msa0999120:three_prime_UTR 20.0%
!! AGTAATAGTATAGCAAAAAA+TGG + chr6_4:80801786-80801805 None:intergenic 20.0%
!! AAAACTTAAGCAAAATCATT+TGG + chr6_4:80801891-80801910 None:intergenic 20.0%
!! TGAAAAAAGTTAGATCTTTA+TGG - chr6_4:80801910-80801929 Msa0999120:intron 20.0%
!! TATGAAAGATAAGATTAACT+TGG - chr6_4:80802290-80802309 Msa0999120:intron 20.0%
!! ATAAGAAATAATCCTATACA+AGG + chr6_4:80803358-80803377 None:intergenic 20.0%
!!! TGAAGTACAATATTTTTACA+GGG - chr6_4:80803380-80803399 Msa0999120:five_prime_UTR 20.0%
!! TAAATTGTTATACAAAACTG+TGG + chr6_4:80803599-80803618 None:intergenic 20.0%
!! AATGAATAACATACAGTAAT+TGG + chr6_4:80803643-80803662 None:intergenic 20.0%
!! AATTACTGTATGTTATTCAT+TGG - chr6_4:80803642-80803661 Msa0999120:intron 20.0%
!!! TAAAGATACATGATGTTTTA+TGG - chr6_4:80803687-80803706 Msa0999120:intron 20.0%
!! ATACATATTCAACATAGAAA+AGG + chr6_4:80804108-80804127 None:intergenic 20.0%
!!! ATTTCTAGATTTATATAGGT+TGG + chr6_4:80804555-80804574 None:intergenic 20.0%
!!! AATATTTTCTTTACCAACAA+GGG + chr6_4:80804951-80804970 None:intergenic 20.0%
!! TGGTAAAGAAAATATTGAAA+CGG - chr6_4:80804955-80804974 Msa0999120:intron 20.0%
!! AATTTCAAAGATAATACACA+TGG + chr6_4:80805050-80805069 None:intergenic 20.0%
!!! AATACTTGCTAAACTATTTT+TGG - chr6_4:80805150-80805169 Msa0999120:five_prime_UTR 20.0%
!!! TAAAAATGTTTTTCAATGCA+TGG + chr6_4:80806243-80806262 None:intergenic 20.0%
!!! ATGCATTGAAAAACATTTTT+AGG - chr6_4:80806242-80806261 Msa0999120:five_prime_UTR 20.0%
!! TTAGGCTATTAATAATTCTA+TGG - chr6_4:80806260-80806279 Msa0999120:five_prime_UTR 20.0%
!! CTAAAAACTTCATTTAAATG+AGG - chr6_4:80806736-80806755 Msa0999120:five_prime_UTR 20.0%
!!! TAAATTTATACTGATTTCCT+CGG - chr6_4:80806820-80806839 Msa0999120:five_prime_UTR 20.0%
!!! AGATTTGTTGATGTAATGAA+TGG - chr6_4:80801113-80801132 Msa0999120:three_prime_UTR 25.0%
! ACCAGTAAAATTTGTGAAAA+TGG - chr6_4:80801224-80801243 Msa0999120:three_prime_UTR 25.0%
! ACATATTTCAATGTTCAATC+TGG - chr6_4:80801263-80801282 Msa0999120:three_prime_UTR 25.0%
! TTAAGCAAGATCATACAAAA+GGG + chr6_4:80801361-80801380 None:intergenic 25.0%
! ATGGTTATTTAGTGTATGTT+CGG + chr6_4:80801767-80801786 None:intergenic 25.0%
! AAAATGAAGGGTAAAGAAAA+GGG + chr6_4:80801850-80801869 None:intergenic 25.0%
! TAAAATGAAGGGTAAAGAAA+AGG + chr6_4:80801851-80801870 None:intergenic 25.0%
!!! GTTAGATCTTTATGGTTTTT+TGG - chr6_4:80801918-80801937 Msa0999120:intron 25.0%
!! TTAATCAAGAGTGTGTAATT+TGG - chr6_4:80802035-80802054 Msa0999120:CDS 25.0%
! TAATTTAGTGAACGATTTGT+TGG - chr6_4:80802067-80802086 Msa0999120:CDS 25.0%
!! AAGATAAGATTAACTTGGTT+TGG - chr6_4:80802295-80802314 Msa0999120:intron 25.0%
!! AGATAAGATTAACTTGGTTT+GGG - chr6_4:80802296-80802315 Msa0999120:intron 25.0%
! TTGTACTTTAACTGAATTAC+TGG - chr6_4:80802401-80802420 Msa0999120:CDS 25.0%
! CTATCAAATATGATTTGAGA+GGG - chr6_4:80802851-80802870 Msa0999120:five_prime_UTR 25.0%
!!! ATTTAGCTTTGCTTTAAAGT+TGG + chr6_4:80802924-80802943 None:intergenic 25.0%
!! ATCCTTGATAACTTTCATAT+AGG + chr6_4:80803076-80803095 None:intergenic 25.0%
! CGTTCATATATAATTTCCTT+GGG + chr6_4:80803279-80803298 None:intergenic 25.0%
!!! GTGAAGTACAATATTTTTAC+AGG - chr6_4:80803379-80803398 Msa0999120:five_prime_UTR 25.0%
!!! GAAGTACAATATTTTTACAG+GGG - chr6_4:80803381-80803400 Msa0999120:five_prime_UTR 25.0%
! ATATTTACATACAACTTCCA+AGG + chr6_4:80803552-80803571 None:intergenic 25.0%
! GAAGTTGTATGTAAATATCA+AGG - chr6_4:80803554-80803573 Msa0999120:five_prime_UTR 25.0%
! TGTATGTAAATATCAAGGTT+AGG - chr6_4:80803559-80803578 Msa0999120:five_prime_UTR 25.0%
! ATGATATCTGGAAATAGATA+TGG - chr6_4:80803739-80803758 Msa0999120:intron 25.0%
! ATATCAGCTTAATTTCAAAG+GGG + chr6_4:80803796-80803815 None:intergenic 25.0%
! CATATCAGCTTAATTTCAAA+GGG + chr6_4:80803797-80803816 None:intergenic 25.0%
! AAAACAGAATATCTCAAATG+TGG + chr6_4:80803864-80803883 None:intergenic 25.0%
! ATGCTGAAGGAATTAATAAT+AGG - chr6_4:80804787-80804806 Msa0999120:intron 25.0%
! AATTAATAATAGGCTTGATG+TGG - chr6_4:80804797-80804816 Msa0999120:intron 25.0%
!! CAATATTTTCTTTACCAACA+AGG + chr6_4:80804952-80804971 None:intergenic 25.0%
! TATATGTCCGATCTTATATT+TGG - chr6_4:80805083-80805102 Msa0999120:five_prime_UTR 25.0%
!! TATCTGTAACATCATGATTT+TGG + chr6_4:80805111-80805130 None:intergenic 25.0%
! ATAAGTACAAGTAATGATAG+TGG - chr6_4:80805302-80805321 Msa0999120:five_prime_UTR 25.0%
! AATTCCATTGGAAAAATTGA+TGG + chr6_4:80805838-80805857 None:intergenic 25.0%
! CAGTTTACTTCATGAATTTA+TGG - chr6_4:80805915-80805934 Msa0999120:five_prime_UTR 25.0%
!!! CTAACTATGTTTTTGTTTTC+AGG - chr6_4:80805948-80805967 Msa0999120:five_prime_UTR 25.0%
!! CAATTGATATTTTCATCTGT+TGG + chr6_4:80806567-80806586 None:intergenic 25.0%
! CAACAGATGAAAATATCAAT+TGG - chr6_4:80806565-80806584 Msa0999120:five_prime_UTR 25.0%
! TATCAATTGGCAAAAACTTT+AGG - chr6_4:80806578-80806597 Msa0999120:five_prime_UTR 25.0%
! TTTCAAATCTTCATGAAGAA+TGG - chr6_4:80806623-80806642 Msa0999120:five_prime_UTR 25.0%
!!! TGATGATGTTTTAGATACAT+TGG - chr6_4:80806696-80806715 Msa0999120:five_prime_UTR 25.0%
! ATAGTAAATTATGCGATTGA+AGG - chr6_4:80806915-80806934 Msa0999120:five_prime_UTR 25.0%
!!! TTTTTTTGTTAGAAGCATTG+TGG - chr6_4:80806964-80806983 Msa0999120:five_prime_UTR 25.0%
! GGTTTATAAAGAATATCTTG+AGG + chr6_4:80807014-80807033 None:intergenic 25.0%
!! GCCATTTTCACAAATTTTAC+TGG + chr6_4:80801228-80801247 None:intergenic 30.0%
CTTAAGCAAGATCATACAAA+AGG + chr6_4:80801362-80801381 None:intergenic 30.0%
TCTGTGAGAAAAAATGTTGA+TGG - chr6_4:80801411-80801430 Msa0999120:three_prime_UTR 30.0%
! TGTTTTCTGAATTGAGGATT+TGG - chr6_4:80801435-80801454 Msa0999120:three_prime_UTR 30.0%
TTACTTGTGGCTTAATCAAT+AGG - chr6_4:80801493-80801512 Msa0999120:three_prime_UTR 30.0%
TACTTGTGGCTTAATCAATA+GGG - chr6_4:80801494-80801513 Msa0999120:three_prime_UTR 30.0%
!! TACCCTTCATTTTAACCAAA+TGG - chr6_4:80801857-80801876 Msa0999120:intron 30.0%
!! ACCCTTCATTTTAACCAAAT+GGG - chr6_4:80801858-80801877 Msa0999120:intron 30.0%
ACCCATTTGGTTAAAATGAA+GGG + chr6_4:80801862-80801881 None:intergenic 30.0%
GATGTTTGTATTGTGAATTG+AGG - chr6_4:80801954-80801973 Msa0999120:intron 30.0%
TGTATTGTGAATTGAGGATT+TGG - chr6_4:80801960-80801979 Msa0999120:intron 30.0%
TGAATTGAGGATTTGGAAAT+TGG - chr6_4:80801967-80801986 Msa0999120:intron 30.0%
! TCAACATTGGTAATAACTTG+TGG - chr6_4:80802185-80802204 Msa0999120:intron 30.0%
AGTGTGTAATCTGATTCATT+TGG - chr6_4:80802218-80802237 Msa0999120:intron 30.0%
TTCTTGATGTATGTGATGAA+TGG - chr6_4:80802261-80802280 Msa0999120:intron 30.0%
! GATAAGATTAACTTGGTTTG+GGG - chr6_4:80802297-80802316 Msa0999120:intron 30.0%
! ATAAGCTTTTAGTCATGTGA+AGG - chr6_4:80802467-80802486 Msa0999120:intron 30.0%
! TAAGCTTTTAGTCATGTGAA+GGG - chr6_4:80802468-80802487 Msa0999120:intron 30.0%
ATAATCTTGCAACTGCAATA+TGG - chr6_4:80802790-80802809 Msa0999120:exon 30.0%
TAATCTTGCAACTGCAATAT+GGG - chr6_4:80802791-80802810 Msa0999120:exon 30.0%
AAAGGATTAAATCTCCTAAC+TGG - chr6_4:80802828-80802847 Msa0999120:five_prime_UTR 30.0%
! ATCATATTTGATAGCCAGTT+AGG + chr6_4:80802845-80802864 None:intergenic 30.0%
GCTATCAAATATGATTTGAG+AGG - chr6_4:80802850-80802869 Msa0999120:five_prime_UTR 30.0%
!! AATTTGCTTTTCCTTAGTTG+AGG - chr6_4:80802956-80802975 Msa0999120:five_prime_UTR 30.0%
AAAATCAATGACATGGGTAA+TGG + chr6_4:80803037-80803056 None:intergenic 30.0%
!!! TTACCCATGTCATTGATTTT+AGG - chr6_4:80803037-80803056 Msa0999120:intron 30.0%
ATGCCTAAAATCAATGACAT+GGG + chr6_4:80803043-80803062 None:intergenic 30.0%
! CTTGATAACTTTCATATAGG+TGG + chr6_4:80803073-80803092 None:intergenic 30.0%
CACCTATATGAAAGTTATCA+AGG - chr6_4:80803071-80803090 Msa0999120:intron 30.0%
CAGAAACTACATCCAAAAAT+AGG + chr6_4:80803190-80803209 None:intergenic 30.0%
GCGTTCATATATAATTTCCT+TGG + chr6_4:80803280-80803299 None:intergenic 30.0%
GAAATTATATATGAACGCAG+AGG - chr6_4:80803282-80803301 Msa0999120:five_prime_UTR 30.0%
TTCAAATCTGTACCTTGTAT+AGG - chr6_4:80803343-80803362 Msa0999120:five_prime_UTR 30.0%
AGTTTAGTAATACACCAACA+TGG - chr6_4:80803471-80803490 Msa0999120:intron 30.0%
CAATACTTTCAATACCATGT+TGG + chr6_4:80803488-80803507 None:intergenic 30.0%
!! TAATAACAAACATTTTGGGG+TGG - chr6_4:80803617-80803636 Msa0999120:five_prime_UTR 30.0%
GAAATAGATATGGAACAAAG+TGG - chr6_4:80803749-80803768 Msa0999120:five_prime_UTR 30.0%
TATCAGCTTAATTTCAAAGG+GGG + chr6_4:80803795-80803814 None:intergenic 30.0%
CCATATCAGCTTAATTTCAA+AGG + chr6_4:80803798-80803817 None:intergenic 30.0%
!! CCTTTGAAATTAAGCTGATA+TGG - chr6_4:80803795-80803814 Msa0999120:five_prime_UTR 30.0%
TGGAACAGAAACAAATAATG+AGG + chr6_4:80804169-80804188 None:intergenic 30.0%
AGTGATTTAATTCACTCGAA+AGG - chr6_4:80804258-80804277 Msa0999120:intron 30.0%
TCACTCGAAAGGATAATTTA+AGG - chr6_4:80804269-80804288 Msa0999120:intron 30.0%
CACTCGAAAGGATAATTTAA+GGG - chr6_4:80804270-80804289 Msa0999120:intron 30.0%
TTATCCATACCAGGTTTATA+AGG - chr6_4:80804509-80804528 Msa0999120:intron 30.0%
TATCCATACCAGGTTTATAA+GGG - chr6_4:80804510-80804529 Msa0999120:intron 30.0%
AACCCTCTAACATATTACAT+CGG - chr6_4:80804640-80804659 Msa0999120:intron 30.0%
TTCCGATGTAATATGTTAGA+GGG + chr6_4:80804645-80804664 None:intergenic 30.0%
TTTCCGATGTAATATGTTAG+AGG + chr6_4:80804646-80804665 None:intergenic 30.0%
AATATGAGACACAATTTCAG+GGG + chr6_4:80804841-80804860 None:intergenic 30.0%
CAATATGAGACACAATTTCA+GGG + chr6_4:80804842-80804861 None:intergenic 30.0%
! AGATAGGGTTTGATACTTTT+AGG + chr6_4:80804923-80804942 None:intergenic 30.0%
TTTGGCACCAAATATAAGAT+CGG + chr6_4:80805093-80805112 None:intergenic 30.0%
TAGTACATCAATGCAATTGA+TGG + chr6_4:80805209-80805228 None:intergenic 30.0%
TTACTTGTACTTATTGACGT+TGG + chr6_4:80805296-80805315 None:intergenic 30.0%
GCTAAAAAAAGCTAGTAGAA+TGG + chr6_4:80805541-80805560 None:intergenic 30.0%
!!! CTACTAGCTTTTTTTAGCTT+AGG - chr6_4:80805543-80805562 Msa0999120:five_prime_UTR 30.0%
! TTTCCAAGCTTTTGATACAA+AGG - chr6_4:80805611-80805630 Msa0999120:five_prime_UTR 30.0%
GTGCTTTATGATTACATTAG+AGG - chr6_4:80805802-80805821 Msa0999120:five_prime_UTR 30.0%
! CATTGGAAAAATTGATGGAT+AGG + chr6_4:80805833-80805852 None:intergenic 30.0%
! CTATCCATCAATTTTTCCAA+TGG - chr6_4:80805831-80805850 Msa0999120:five_prime_UTR 30.0%
! AAAGTGCTCAAAAATTCCAT+TGG + chr6_4:80805850-80805869 None:intergenic 30.0%
!!! TTTTGAGCACTTTGAAATTC+AGG - chr6_4:80805857-80805876 Msa0999120:five_prime_UTR 30.0%
TTCTGTACACTCAATAAAGA+AGG + chr6_4:80805976-80805995 None:intergenic 30.0%
! CTTGTTATCCTTGATGAATT+AGG - chr6_4:80806032-80806051 Msa0999120:five_prime_UTR 30.0%
TTATCCTTGATGAATTAGGT+CGG - chr6_4:80806036-80806055 Msa0999120:five_prime_UTR 30.0%
AAAATTACAGGATAAGGAAG+TGG + chr6_4:80806217-80806236 None:intergenic 30.0%
! TAACCTTTTCAATCAGATGT+CGG + chr6_4:80806301-80806320 None:intergenic 30.0%
!!! CAATGTTCACAGTTTTTTCT+GGG + chr6_4:80806531-80806550 None:intergenic 30.0%
TATTCTTGTGATAGACATCA+AGG + chr6_4:80806656-80806675 None:intergenic 30.0%
!!! AAGAACACCTGTTTTTGTTT+TGG - chr6_4:80806849-80806868 Msa0999120:five_prime_UTR 30.0%
!! TGGCTTGTTTATTCTTGTTT+GGG - chr6_4:80806879-80806898 Msa0999120:five_prime_UTR 30.0%
CATTGTGGTTATACTACAAT+AGG - chr6_4:80806979-80806998 Msa0999120:five_prime_UTR 30.0%
AGCAAATGCTTGAATTAGTT+AGG + chr6_4:80807035-80807054 None:intergenic 30.0%
!! GATGGTTGTTTTCTGAATTG+AGG - chr6_4:80801429-80801448 Msa0999120:three_prime_UTR 35.0%
! AGGATTTGGAATGATGTGTA+TGG - chr6_4:80801449-80801468 Msa0999120:three_prime_UTR 35.0%
! GGATTTGGAATGATGTGTAT+GGG - chr6_4:80801450-80801469 Msa0999120:three_prime_UTR 35.0%
TCTGCTTCTGTAATTACTTG+TGG - chr6_4:80801480-80801499 Msa0999120:three_prime_UTR 35.0%
! AGTTTTGCCAAGTGTATGTT+TGG - chr6_4:80801626-80801645 Msa0999120:three_prime_UTR 35.0%
TGTGAATCCAAACATACACT+TGG + chr6_4:80801636-80801655 None:intergenic 35.0%
GTTTGGATTCACATTGAGAA+TGG - chr6_4:80801643-80801662 Msa0999120:three_prime_UTR 35.0%
AAAAGGGTGATCTTACAACA+GGG + chr6_4:80801834-80801853 None:intergenic 35.0%
CACCCATTTGGTTAAAATGA+AGG + chr6_4:80801863-80801882 None:intergenic 35.0%
GGAAATTGGAATTATGTGCA+CGG - chr6_4:80801981-80802000 Msa0999120:intron 35.0%
GAAATTGGAATTATGTGCAC+GGG - chr6_4:80801982-80802001 Msa0999120:intron 35.0%
TGTTGGCAATATGATGTGAA+TGG - chr6_4:80802084-80802103 Msa0999120:CDS 35.0%
ATGGAAAACGAAAACAACAC+AGG + chr6_4:80802520-80802539 None:intergenic 35.0%
GAATTCATCAACAGAATCTG+AGG + chr6_4:80802765-80802784 None:intergenic 35.0%
TGCAGTTGCAAGATTATAGT+AGG + chr6_4:80802787-80802806 None:intergenic 35.0%
AATCTTGCAACTGCAATATG+GGG - chr6_4:80802792-80802811 Msa0999120:five_prime_UTR 35.0%
TGGGGCTTGAAATATGTTAA+AGG - chr6_4:80802810-80802829 Msa0999120:five_prime_UTR 35.0%
AGTAGCTGTTATCAATCTGA+AGG + chr6_4:80802986-80803005 None:intergenic 35.0%
CTACTTTATTCCCTAGACTT+GGG - chr6_4:80803001-80803020 Msa0999120:intron 35.0%
AGAACAAAAACCCAAGTCTA+GGG + chr6_4:80803014-80803033 None:intergenic 35.0%
CATGCCTAAAATCAATGACA+TGG + chr6_4:80803044-80803063 None:intergenic 35.0%
!!! CATGTCATTGATTTTAGGCA+TGG - chr6_4:80803042-80803061 Msa0999120:intron 35.0%
TCAAAATACCCTTCCTTAAC+TGG - chr6_4:80803162-80803181 Msa0999120:five_prime_UTR 35.0%
AATAGGAACCAGTTAAGGAA+GGG + chr6_4:80803173-80803192 None:intergenic 35.0%
AAATAGGAACCAGTTAAGGA+AGG + chr6_4:80803174-80803193 None:intergenic 35.0%
CCAAAAATAGGAACCAGTTA+AGG + chr6_4:80803178-80803197 None:intergenic 35.0%
!! CCTTAACTGGTTCCTATTTT+TGG - chr6_4:80803175-80803194 Msa0999120:five_prime_UTR 35.0%
TTGAAGTGTGTTCAAGCTAA+AGG + chr6_4:80803328-80803347 None:intergenic 35.0%
AAATGCTTTCTCAGCTTCTT+TGG + chr6_4:80803410-80803429 None:intergenic 35.0%
TTCTTTACTATGCTTTGCCT+TGG - chr6_4:80803532-80803551 Msa0999120:five_prime_UTR 35.0%
ATATCATAGAGATGCAGGAA+AGG + chr6_4:80803726-80803745 None:intergenic 35.0%
TCTCAAATGTGGAGATGTTA+CGG + chr6_4:80803853-80803872 None:intergenic 35.0%
AGGTCATCTGAATAGATTGA+TGG - chr6_4:80804371-80804390 Msa0999120:intron 35.0%
! TCTTTTCATACAGCTAGATG+AGG - chr6_4:80804467-80804486 Msa0999120:intron 35.0%
TTATAAGGGTTGCCTCAAAA+TGG - chr6_4:80804524-80804543 Msa0999120:intron 35.0%
!! GATAACTGTGTTACTTCATC+TGG - chr6_4:80804723-80804742 Msa0999120:intron 35.0%
ATTCCTTCAGCATCTTTCAA+TGG + chr6_4:80804780-80804799 None:intergenic 35.0%
GCAATATGAGACACAATTTC+AGG + chr6_4:80804843-80804862 None:intergenic 35.0%
CCAAGTAATAGTTCCAAATC+TGG + chr6_4:80804885-80804904 None:intergenic 35.0%
! CCAGATTTGGAACTATTACT+TGG - chr6_4:80804882-80804901 Msa0999120:intron 35.0%
! AGCAAGTATTGTGAGTGTTT+CGG + chr6_4:80805140-80805159 None:intergenic 35.0%
!! TTTTGGAGAAAGCTAGTCAA+TGG - chr6_4:80805167-80805186 Msa0999120:five_prime_UTR 35.0%
!!! GTTACTTCTAGCTTTTCATG+TGG - chr6_4:80805241-80805260 Msa0999120:five_prime_UTR 35.0%
TTTCATGTGGAACTATGTCT+AGG - chr6_4:80805254-80805273 Msa0999120:five_prime_UTR 35.0%
TGCTCAAAATGAAGGGATTA+CGG - chr6_4:80805333-80805352 Msa0999120:five_prime_UTR 35.0%
! AGGATCATGTCATTTGGAAT+AGG + chr6_4:80805392-80805411 None:intergenic 35.0%
ATTCCAAATGACATGATCCT+TGG - chr6_4:80805392-80805411 Msa0999120:five_prime_UTR 35.0%
AAAAGCTAGTAGAATGGAGA+AGG + chr6_4:80805535-80805554 None:intergenic 35.0%
CTTCCTTTGTATCAAAAGCT+TGG + chr6_4:80805617-80805636 None:intergenic 35.0%
GAATTGTGTTCTTTCAGTTG+TGG - chr6_4:80805703-80805722 Msa0999120:five_prime_UTR 35.0%
!! CACTTTGAAATTCAGGATTG+TGG - chr6_4:80805864-80805883 Msa0999120:five_prime_UTR 35.0%
TACTTCATGAATTTATGGCG+TGG - chr6_4:80805920-80805939 Msa0999120:five_prime_UTR 35.0%
TATCCTTGATGAATTAGGTC+GGG - chr6_4:80806037-80806056 Msa0999120:five_prime_UTR 35.0%
AAGTCTTACAGCATATGCAA+TGG + chr6_4:80806087-80806106 None:intergenic 35.0%
!! GATTCTGGTTTAGAGTACAA+TGG - chr6_4:80806152-80806171 Msa0999120:five_prime_UTR 35.0%
! ATGGTTCTATACTTACCATG+AGG - chr6_4:80806171-80806190 Msa0999120:five_prime_UTR 35.0%
TGGAGCAAAATTACAGGATA+AGG + chr6_4:80806223-80806242 None:intergenic 35.0%
AATGCATGGAGCAAAATTAC+AGG + chr6_4:80806229-80806248 None:intergenic 35.0%
ATAATTCTATGGATGCTCAC+AGG - chr6_4:80806271-80806290 Msa0999120:five_prime_UTR 35.0%
ATTCCGACATCTGATTGAAA+AGG - chr6_4:80806295-80806314 Msa0999120:five_prime_UTR 35.0%
GAGATGCAAATTCTTGTTAG+CGG + chr6_4:80806356-80806375 None:intergenic 35.0%
! TTCCTGATCTTGTTTGGAAA+GGG + chr6_4:80806431-80806450 None:intergenic 35.0%
AACTAGTTCCTGATCTTGTT+TGG + chr6_4:80806437-80806456 None:intergenic 35.0%
!!! AGGAACTAGTTTTCCTATAC+CGG - chr6_4:80806446-80806465 Msa0999120:five_prime_UTR 35.0%
!!! GCAATGTTCACAGTTTTTTC+TGG + chr6_4:80806532-80806551 None:intergenic 35.0%
AACTGTGAACATTGCTTCAA+AGG - chr6_4:80806537-80806556 Msa0999120:five_prime_UTR 35.0%
GATGTCTATCACAAGAATAG+AGG - chr6_4:80806657-80806676 Msa0999120:five_prime_UTR 35.0%
! TAGATACATTGGTCTGTTTG+CGG - chr6_4:80806707-80806726 Msa0999120:five_prime_UTR 35.0%
CAGTTTGCCAAAACAAAAAC+AGG + chr6_4:80806859-80806878 None:intergenic 35.0%
!!! GTTTTTGTTTTGGCAAACTG+TGG - chr6_4:80806859-80806878 Msa0999120:five_prime_UTR 35.0%
!! GTGGCTTGTTTATTCTTGTT+TGG - chr6_4:80806878-80806897 Msa0999120:five_prime_UTR 35.0%
! CAGTCTTCAATCTGAAACGT+TGG - chr6_4:80801579-80801598 Msa0999120:three_prime_UTR 40.0%
TTTGGAAAAACCACGATGAC+AGG + chr6_4:80801732-80801751 None:intergenic 40.0%
TTAGTGTATGTTCGGATCAG+CGG + chr6_4:80801759-80801778 None:intergenic 40.0%
ATCTTACAACAGGGTGAGTT+TGG + chr6_4:80801825-80801844 None:intergenic 40.0%
GAAAAGGGTGATCTTACAAC+AGG + chr6_4:80801835-80801854 None:intergenic 40.0%
ATGAAGCACATACACAACAC+TGG - chr6_4:80801192-80801211 Msa0999120:three_prime_UTR 40.0%
CAACACTGGCATATCAACAT+TGG - chr6_4:80802172-80802191 Msa0999120:intron 40.0%
!! AAGATTAACTTGGTTTGGGG+TGG - chr6_4:80802300-80802319 Msa0999120:intron 40.0%
TCTCTGGCTAGATTTAGCTA+TGG - chr6_4:80802365-80802384 Msa0999120:CDS 40.0%
ATTTGTGTCTGTGCCAGTTT+AGG - chr6_4:80802430-80802449 Msa0999120:CDS 40.0%
AGGTCGCTGTAGTAAATCTT+CGG + chr6_4:80802662-80802681 None:intergenic 40.0%
!! TTTCTTTGGAACCAATGCTG+CGG + chr6_4:80802721-80802740 None:intergenic 40.0%
TCAGCTCTCAAGAGTTTCTT+TGG + chr6_4:80802735-80802754 None:intergenic 40.0%
!! GAAACACTACAGAAGGTATC+AGG - chr6_4:80802897-80802916 Msa0999120:five_prime_UTR 40.0%
CTGAAGGTTATCCTCAACTA+AGG + chr6_4:80802970-80802989 None:intergenic 40.0%
! GCTACTTTATTCCCTAGACT+TGG - chr6_4:80803000-80803019 Msa0999120:intron 40.0%
GAGAACAAAAACCCAAGTCT+AGG + chr6_4:80803015-80803034 None:intergenic 40.0%
ACATGACGCATCATCATCTA+TGG + chr6_4:80803109-80803128 None:intergenic 40.0%
CACGCAAATTAGCTAACAGT+AGG + chr6_4:80803233-80803252 None:intergenic 40.0%
! GCGTGTGTGAATGCAATTTT+AGG - chr6_4:80803248-80803267 Msa0999120:five_prime_UTR 40.0%
TCCTGCATCTCTATGATATC+TGG - chr6_4:80803727-80803746 Msa0999120:intron 40.0%
TCCAGATATCATAGAGATGC+AGG + chr6_4:80803731-80803750 None:intergenic 40.0%
ATGGAACAAAGTGGTCTCTT+AGG - chr6_4:80803758-80803777 Msa0999120:five_prime_UTR 40.0%
AAGTGGTCTCTTAGGAATTC+AGG - chr6_4:80803766-80803785 Msa0999120:five_prime_UTR 40.0%
!! TTTGTTTCTGTTCCACTTGC+AGG - chr6_4:80804174-80804193 Msa0999120:intron 40.0%
!! AGGAGTCAATTGAAGTGTTG+TGG + chr6_4:80804202-80804221 None:intergenic 40.0%
! CACTTCAATTGACTCCTATG+CGG - chr6_4:80804205-80804224 Msa0999120:intron 40.0%
GATTTCACGGTGAATCACTT+TGG + chr6_4:80804325-80804344 None:intergenic 40.0%
GAGCAGATAACGTGATTTCA+CGG + chr6_4:80804338-80804357 None:intergenic 40.0%
GAAATCACGTTATCTGCTCT+TGG - chr6_4:80804339-80804358 Msa0999120:intron 40.0%
AGTTGCACACTGCTCAAAAA+AGG + chr6_4:80804419-80804438 None:intergenic 40.0%
TAGATGAGGTCCTTCAGAAT+GGG - chr6_4:80804481-80804500 Msa0999120:intron 40.0%
GATAAATGTCCCCATTCTGA+AGG + chr6_4:80804494-80804513 None:intergenic 40.0%
CAACCCTTATAAACCTGGTA+TGG + chr6_4:80804516-80804535 None:intergenic 40.0%
AGAAATCTTTGGCAATAGCG+AGG - chr6_4:80804569-80804588 Msa0999120:intron 40.0%
!! GTGTTACTTCATCTGGAAAG+CGG - chr6_4:80804730-80804749 Msa0999120:intron 40.0%
TGTCCATTGAAAGATGCTGA+AGG - chr6_4:80804774-80804793 Msa0999120:intron 40.0%
TTTCAGGGGAAGCTATTAGA+TGG + chr6_4:80804827-80804846 None:intergenic 40.0%
TCTTCGTAAGCTTCCAGATT+TGG - chr6_4:80804869-80804888 Msa0999120:intron 40.0%
! TGATACTTTTAGGCTGGACT+TGG + chr6_4:80804913-80804932 None:intergenic 40.0%
! AGGGTTTGATACTTTTAGGC+TGG + chr6_4:80804919-80804938 None:intergenic 40.0%
! AATCCCTTCATTTTGAGCAC+AGG + chr6_4:80805332-80805351 None:intergenic 40.0%
TACCTGTCTGGCTGTTATTA+TGG - chr6_4:80805496-80805515 Msa0999120:five_prime_UTR 40.0%
ATGGAGAAGGATAAGAACCT+GGG + chr6_4:80805522-80805541 None:intergenic 40.0%
AATGGAGAAGGATAAGAACC+TGG + chr6_4:80805523-80805542 None:intergenic 40.0%
GCTTAGGTATCTCTGATGAA+AGG - chr6_4:80805559-80805578 Msa0999120:five_prime_UTR 40.0%
! CGTCAGAGGCATATTATAAG+AGG + chr6_4:80805651-80805670 None:intergenic 40.0%
GAAAGAACACAATTCTCGCA+CGG + chr6_4:80805698-80805717 None:intergenic 40.0%
GTAAACTGCATGAGTACACA+AGG + chr6_4:80805903-80805922 None:intergenic 40.0%
ATCCTTGATGAATTAGGTCG+GGG - chr6_4:80806038-80806057 Msa0999120:five_prime_UTR 40.0%
GTTCTATACTTACCATGAGG+TGG - chr6_4:80806174-80806193 Msa0999120:five_prime_UTR 40.0%
TGCAAATTCTTGTTAGCGGA+TGG + chr6_4:80806352-80806371 None:intergenic 40.0%
TACCCTTTCCAAACAAGATC+AGG - chr6_4:80806426-80806445 Msa0999120:five_prime_UTR 40.0%
! GTTCCTGATCTTGTTTGGAA+AGG + chr6_4:80806432-80806451 None:intergenic 40.0%
TGTAGCTTCTGGCAAAATCG+TGG + chr6_4:80801687-80801706 None:intergenic 45.0%
AACAAAACCACCTGTCATCG+TGG - chr6_4:80801719-80801738 Msa0999120:three_prime_UTR 45.0%
CATTTGGAGACACACCCATT+TGG + chr6_4:80801875-80801894 None:intergenic 45.0%
ATGTGCACGGGATTTAGATC+TGG - chr6_4:80801994-80802013 Msa0999120:intron 45.0%
ATCTGGTTGGAAATAGCTCG+TGG - chr6_4:80802011-80802030 Msa0999120:intron 45.0%
!! TTAACTTGGTTTGGGGTGGT+CGG - chr6_4:80802304-80802323 Msa0999120:intron 45.0%
TGGTCGGAGGGAGTTTATTT+CGG - chr6_4:80802320-80802339 Msa0999120:intron 45.0%
TTTCGGTCCTGTCTAGTGTA+TGG - chr6_4:80802337-80802356 Msa0999120:intron 45.0%
GTGCGTGTTCCGCATATATA+CGG - chr6_4:80802492-80802511 Msa0999120:intron 45.0%
! ACACAGGTGCCGTATATATG+CGG + chr6_4:80802504-80802523 None:intergenic 45.0%
GGTCGCTGTAGTAAATCTTC+GGG + chr6_4:80802661-80802680 None:intergenic 45.0%
! ACTACAGCGACCTTATTTGC+TGG - chr6_4:80802669-80802688 Msa0999120:CDS 45.0%
ACATCAGTGAACAGCTCTCA+AGG + chr6_4:80802695-80802714 None:intergenic 45.0%
!! TTCTTTGGAACCAATGCTGC+GGG + chr6_4:80802720-80802739 None:intergenic 45.0%
TCCAGCTGAAACACTACAGA+AGG - chr6_4:80802890-80802909 Msa0999120:five_prime_UTR 45.0%
ACCTTCTGTAGTGTTTCAGC+TGG + chr6_4:80802894-80802913 None:intergenic 45.0%
TGATGCGTCATGTTCTGCTT+TGG - chr6_4:80803116-80803135 Msa0999120:five_prime_UTR 45.0%
GATGCGTCATGTTCTGCTTT+GGG - chr6_4:80803117-80803136 Msa0999120:five_prime_UTR 45.0%
ATGCGTCATGTTCTGCTTTG+GGG - chr6_4:80803118-80803137 Msa0999120:five_prime_UTR 45.0%
!! GCAATTTTAGGTGTCACCCA+AGG - chr6_4:80803260-80803279 Msa0999120:five_prime_UTR 45.0%
ATCACGTTATCTGCTCTTGG+TGG - chr6_4:80804342-80804361 Msa0999120:intron 45.0%
CTAGATGAGGTCCTTCAGAA+TGG - chr6_4:80804480-80804499 Msa0999120:intron 45.0%
AGATGAGGTCCTTCAGAATG+GGG - chr6_4:80804482-80804501 Msa0999120:intron 45.0%
TGGGGACATTTATCCATACC+AGG - chr6_4:80804500-80804519 Msa0999120:intron 45.0%
TGAGGCAACCCTTATAAACC+TGG + chr6_4:80804521-80804540 None:intergenic 45.0%
AAGGGTTGCCTCAAAATGGA+TGG - chr6_4:80804528-80804547 Msa0999120:intron 45.0%
! AGGTTGGACCATCCATTTTG+AGG + chr6_4:80804539-80804558 None:intergenic 45.0%
ATCTTTGGCAATAGCGAGGA+TGG - chr6_4:80804573-80804592 Msa0999120:intron 45.0%
GTCTGTTCTGCTTGTGTTTC+AGG - chr6_4:80804681-80804700 Msa0999120:intron 45.0%
!! CTTTTAGGCTGGACTTGGTT+CGG + chr6_4:80804908-80804927 None:intergenic 45.0%
CCAACAAGGGCAGTAAGATA+GGG + chr6_4:80804938-80804957 None:intergenic 45.0%
ACCAACAAGGGCAGTAAGAT+AGG + chr6_4:80804939-80804958 None:intergenic 45.0%
ACGTTGGCACTAACTATGAC+AGG + chr6_4:80805280-80805299 None:intergenic 45.0%
AGCACCTGTGCTCAAAATGA+AGG - chr6_4:80805325-80805344 Msa0999120:five_prime_UTR 45.0%
GCACCTGTGCTCAAAATGAA+GGG - chr6_4:80805326-80805345 Msa0999120:five_prime_UTR 45.0%
TTACGGCATCCATTTGCTCT+TGG - chr6_4:80805350-80805369 Msa0999120:five_prime_UTR 45.0%
TCGCCAAGGATCATGTCATT+TGG + chr6_4:80805398-80805417 None:intergenic 45.0%
ATGATCCTTGGCGAGAATGA+AGG - chr6_4:80805404-80805423 Msa0999120:five_prime_UTR 45.0%
!! GCTGATTTTCCACCCATGTT+TGG + chr6_4:80805464-80805483 None:intergenic 45.0%
GATATCATCTTCACACGCCT+TGG - chr6_4:80805725-80805744 Msa0999120:five_prime_UTR 45.0%
TGATTCTATCTGTGGCTCCA+AGG + chr6_4:80805745-80805764 None:intergenic 45.0%
TGGAGCCACAGATAGAATCA+TGG - chr6_4:80805745-80805764 Msa0999120:five_prime_UTR 45.0%
TTCCCCGACCTAATTCATCA+AGG + chr6_4:80806043-80806062 None:intergenic 45.0%
TTCTCAGTATGTCCACCTCA+TGG + chr6_4:80806189-80806208 None:intergenic 45.0%
CCATGTGTTGCATTGTAACG+TGG + chr6_4:80806381-80806400 None:intergenic 45.0%
CCACGTTACAATGCAACACA+TGG - chr6_4:80806378-80806397 Msa0999120:five_prime_UTR 45.0%
CTAGAGATGTAGAGTGCAAC+AGG - chr6_4:80806762-80806781 Msa0999120:five_prime_UTR 45.0%
AGATGTAGAGTGCAACAGGT+AGG - chr6_4:80806766-80806785 Msa0999120:five_prime_UTR 45.0%
GATGTAGAGTGCAACAGGTA+GGG - chr6_4:80806767-80806786 Msa0999120:five_prime_UTR 45.0%
CAGGTGTTCTTTAATCACCG+AGG + chr6_4:80806840-80806859 None:intergenic 45.0%
AGGAGTTGCAGAATGCATTG+TGG - chr6_4:80806935-80806954 Msa0999120:five_prime_UTR 45.0%
!! AATTATACAAAAAAATATTT+AGG - chr6_4:80802609-80802628 Msa0999120:CDS 5.0%
!! TAAATTTAAAAAAACATAAT+CGG - chr6_4:80804142-80804161 Msa0999120:intron 5.0%
AAGCTGCAACGTGTAGCTTC+TGG + chr6_4:80801698-80801717 None:intergenic 50.0%
GGAAAAACCACGATGACAGG+TGG + chr6_4:80801729-80801748 None:intergenic 50.0%
! GTTCGGATCAGCGGTGATTT+TGG + chr6_4:80801750-80801769 None:intergenic 50.0%
GCACGGGATTTAGATCTGGT+TGG - chr6_4:80801998-80802017 Msa0999120:intron 50.0%
GACAGCACCATACACTAGAC+AGG + chr6_4:80802347-80802366 None:intergenic 50.0%
!! CTAGTGTATGGTGCTGTCTC+TGG - chr6_4:80802349-80802368 Msa0999120:intron 50.0%
TCTGTGCCAGTTTAGGTGCT+TGG - chr6_4:80802437-80802456 Msa0999120:intron 50.0%
CTGTGCCAGTTTAGGTGCTT+GGG - chr6_4:80802438-80802457 Msa0999120:intron 50.0%
TGTGCCAGTTTAGGTGCTTG+GGG - chr6_4:80802439-80802458 Msa0999120:intron 50.0%
AACACCCCAAGCACCTAAAC+TGG + chr6_4:80802446-80802465 None:intergenic 50.0%
TTCCATACCTTGCGTCTTGC+TGG - chr6_4:80802534-80802553 Msa0999120:intron 50.0%
TCCATACCTTGCGTCTTGCT+GGG - chr6_4:80802535-80802554 Msa0999120:intron 50.0%
GCTCTCAAGGCCAGCAAATA+AGG + chr6_4:80802682-80802701 None:intergenic 50.0%
TGCGTCATGTTCTGCTTTGG+GGG - chr6_4:80803119-80803138 Msa0999120:five_prime_UTR 50.0%
AGCTCAATACAAGCTGCACG+TGG - chr6_4:80803980-80803999 Msa0999120:intron 50.0%
AGTGTTGTGGAACCTGCAAG+TGG + chr6_4:80804189-80804208 None:intergenic 50.0%
AAGTCAGTGATCGACCGCAT+AGG + chr6_4:80804222-80804241 None:intergenic 50.0%
! TATGCGGTCGATCACTGACT+TGG - chr6_4:80804221-80804240 Msa0999120:intron 50.0%
!! TCTGCTCTTGGTGGACTGAT+AGG - chr6_4:80804351-80804370 Msa0999120:intron 50.0%
TTTGGCAATAGCGAGGATGG+TGG - chr6_4:80804576-80804595 Msa0999120:intron 50.0%
CATCTGGAAAGCGGCTTCTT+AGG - chr6_4:80804739-80804758 Msa0999120:intron 50.0%
GAAAGCGGCTTCTTAGGAAC+TGG - chr6_4:80804745-80804764 Msa0999120:intron 50.0%
CCCTATCTTACTGCCCTTGT+TGG - chr6_4:80804935-80804954 Msa0999120:intron 50.0%
CCAGTCTCACCAAGAGCAAA+TGG + chr6_4:80805362-80805381 None:intergenic 50.0%
CCATTTGCTCTTGGTGAGAC+TGG - chr6_4:80805359-80805378 Msa0999120:five_prime_UTR 50.0%
ATCCTTGGCGAGAATGAAGG+CGG - chr6_4:80805407-80805426 Msa0999120:five_prime_UTR 50.0%
CTTCTGACAGGGCCAAACAT+GGG - chr6_4:80805449-80805468 Msa0999120:five_prime_UTR 50.0%
! ACTTTTGCGTGCTACCTGTC+TGG - chr6_4:80805484-80805503 Msa0999120:five_prime_UTR 50.0%
GGCCATAATAACAGCCAGAC+AGG + chr6_4:80805501-80805520 None:intergenic 50.0%
TCTGGCTGTTATTATGGCCC+AGG - chr6_4:80805502-80805521 Msa0999120:five_prime_UTR 50.0%
GCCACAGATAGAATCATGGC+AGG - chr6_4:80805749-80805768 Msa0999120:five_prime_UTR 50.0%
GCCTGCCATGATTCTATCTG+TGG + chr6_4:80805753-80805772 None:intergenic 50.0%
CGGATTGCAGGTTGCACTTA+TGG - chr6_4:80806498-80806517 Msa0999120:five_prime_UTR 50.0%
TTGCAGGTTGCACTTATGGC+TGG - chr6_4:80806502-80806521 Msa0999120:five_prime_UTR 50.0%
TCCCAGCAAGACGCAAGGTA+TGG + chr6_4:80802539-80802558 None:intergenic 55.0%
TACCTTGCGTCTTGCTGGGA+TGG - chr6_4:80802539-80802558 Msa0999120:intron 55.0%
AACCATCCCAGCAAGACGCA+AGG + chr6_4:80802544-80802563 None:intergenic 55.0%
ACTGATGTAGCCCGCAGCAT+TGG - chr6_4:80802707-80802726 Msa0999120:CDS 55.0%
!! AGCGAGGATGGTGGAAAAGC+AGG - chr6_4:80804585-80804604 Msa0999120:intron 55.0%
TCCTTGGCGAGAATGAAGGC+GGG - chr6_4:80805408-80805427 Msa0999120:five_prime_UTR 55.0%
CTCGCACGATGCTTCTGACA+GGG - chr6_4:80805438-80805457 Msa0999120:five_prime_UTR 55.0%
GCTTCTGACAGGGCCAAACA+TGG - chr6_4:80805448-80805467 Msa0999120:five_prime_UTR 55.0%
CCTAACTGCAGAGACGTCAG+AGG + chr6_4:80805665-80805684 None:intergenic 55.0%
CCTCTGACGTCTCTGCAGTT+AGG - chr6_4:80805662-80805681 Msa0999120:five_prime_UTR 55.0%
!! TTCCTATACCGGCTTGCCTC+TGG - chr6_4:80806457-80806476 Msa0999120:five_prime_UTR 55.0%
ACCTGCAATCCGTAGCTCTC+CGG + chr6_4:80806490-80806509 None:intergenic 55.0%
!! ACTTGGTTTGGGGTGGTCGG+AGG - chr6_4:80802307-80802326 Msa0999120:intron 60.0%
!! CTTGGTTTGGGGTGGTCGGA+GGG - chr6_4:80802308-80802327 Msa0999120:intron 60.0%
!! CCTGTCAGAAGCATCGTGCG+AGG + chr6_4:80805440-80805459 None:intergenic 60.0%
CCTCGCACGATGCTTCTGAC+AGG - chr6_4:80805437-80805456 Msa0999120:five_prime_UTR 60.0%
CTGACAGGGCCAAACATGGG+TGG - chr6_4:80805452-80805471 Msa0999120:five_prime_UTR 60.0%
CTCCAGAGGCAAGCCGGTAT+AGG + chr6_4:80806462-80806481 None:intergenic 60.0%
GACATGCTCCAGAGGCAAGC+CGG + chr6_4:80806468-80806487 None:intergenic 60.0%
!! GCTTGCCTCTGGAGCATGTC+CGG - chr6_4:80806468-80806487 Msa0999120:five_prime_UTR 60.0%
GGAGCATGTCCGGAGAGCTA+CGG - chr6_4:80806478-80806497 Msa0999120:five_prime_UTR 60.0%
! TCCGGAGAGCTACGGATTGC+AGG - chr6_4:80806486-80806505 Msa0999120:five_prime_UTR 60.0%
GCCCGCCTTCATTCTCGCCA+AGG + chr6_4:80805412-80805431 None:intergenic 65.0%
GCTCTCCGGACATGCTCCAG+AGG + chr6_4:80806476-80806495 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 80801076 80807056 80801076 ID=Msa0999120;Name=Msa0999120
chr6_4 mRNA 80801076 80807056 80801076 ID=Msa0999120-mRNA-1;Parent=Msa0999120;Name=Msa0999120-mRNA-1;_AED=0.09;_eAED=0.09;_QI=3029|0.88|0.9|1|0.66|0.5|10|744|145
chr6_4 exon 80801076 80801839 80801076 ID=Msa0999120-mRNA-1:exon:15399;Parent=Msa0999120-mRNA-1
chr6_4 exon 80802025 80802162 80802025 ID=Msa0999120-mRNA-1:exon:15398;Parent=Msa0999120-mRNA-1
chr6_4 exon 80802356 80802452 80802356 ID=Msa0999120-mRNA-1:exon:15397;Parent=Msa0999120-mRNA-1
chr6_4 exon 80802609 80803004 80802609 ID=Msa0999120-mRNA-1:exon:15396;Parent=Msa0999120-mRNA-1
chr6_4 exon 80803100 80803429 80803100 ID=Msa0999120-mRNA-1:exon:15395;Parent=Msa0999120-mRNA-1
chr6_4 exon 80803526 80803652 80803526 ID=Msa0999120-mRNA-1:exon:15394;Parent=Msa0999120-mRNA-1
chr6_4 exon 80803740 80803936 80803740 ID=Msa0999120-mRNA-1:exon:15393;Parent=Msa0999120-mRNA-1
chr6_4 exon 80804684 80804731 80804684 ID=Msa0999120-mRNA-1:exon:15392;Parent=Msa0999120-mRNA-1
chr6_4 exon 80804829 80804862 80804829 ID=Msa0999120-mRNA-1:exon:15391;Parent=Msa0999120-mRNA-1
chr6_4 exon 80804977 80807056 80804977 ID=Msa0999120-mRNA-1:exon:15390;Parent=Msa0999120-mRNA-1
chr6_4 five_prime_UTR 80804977 80807056 80804977 ID=Msa0999120-mRNA-1:five_prime_utr;Parent=Msa0999120-mRNA-1
chr6_4 five_prime_UTR 80804829 80804862 80804829 ID=Msa0999120-mRNA-1:five_prime_utr;Parent=Msa0999120-mRNA-1
chr6_4 five_prime_UTR 80804684 80804731 80804684 ID=Msa0999120-mRNA-1:five_prime_utr;Parent=Msa0999120-mRNA-1
chr6_4 five_prime_UTR 80803740 80803936 80803740 ID=Msa0999120-mRNA-1:five_prime_utr;Parent=Msa0999120-mRNA-1
chr6_4 five_prime_UTR 80803526 80803652 80803526 ID=Msa0999120-mRNA-1:five_prime_utr;Parent=Msa0999120-mRNA-1
chr6_4 five_prime_UTR 80803100 80803429 80803100 ID=Msa0999120-mRNA-1:five_prime_utr;Parent=Msa0999120-mRNA-1
chr6_4 five_prime_UTR 80802792 80803004 80802792 ID=Msa0999120-mRNA-1:five_prime_utr;Parent=Msa0999120-mRNA-1
chr6_4 CDS 80802609 80802791 80802609 ID=Msa0999120-mRNA-1:cds;Parent=Msa0999120-mRNA-1
chr6_4 CDS 80802356 80802452 80802356 ID=Msa0999120-mRNA-1:cds;Parent=Msa0999120-mRNA-1
chr6_4 CDS 80802025 80802162 80802025 ID=Msa0999120-mRNA-1:cds;Parent=Msa0999120-mRNA-1
chr6_4 CDS 80801820 80801839 80801820 ID=Msa0999120-mRNA-1:cds;Parent=Msa0999120-mRNA-1
chr6_4 three_prime_UTR 80801076 80801819 80801076 ID=Msa0999120-mRNA-1:three_prime_utr;Parent=Msa0999120-mRNA-1
Gene Sequence

>Msa0999120

ATGAAGGGATTACGGCATCCATTTGCTCTTGGTGAGACTGGACGTGAGCCTATTCCAAATGACATGATCCTTGGCGAGAATGAAGGCGGGCATCATCCTCGCACGATGCTTCTGACAGGGCCAAACATGGGTGGAAAATCAGCACTTTTGCGTGCTACCTGTCTGGCTGTTATTATGGCCCAGTTAGGATGCTATGTGCCGTGCGAGAATTGTGTTCTTTCAGTTGTGGATATCATCTTCACACGCCTTGGAGCCACAGATAGAATCATGGCAGGCGAGAGTACCTTCTTTATTGAGTGTACAGAAACTGCATCAGTGCTTCATAATGCTACTCAAGATTCTCTTGTTATCCTTGATGAATTAGGTCGGGGAACAAGCACTTTTGATGGCTACGCCATTGCATATGCTGTAAGACTTCGTATTCCGACATCTGATTGA
Protein sequence

>Msa0999120

MKGLRHPFALGETGREPIPNDMILGENEGGHHPRTMLLTGPNMGGKSALLRATCLAVIMAQLGCYVPCENCVLSVVDIIFTRLGATDRIMAGESTFFIECTETASVLHNATQDSLVILDELGRGTSTFDGYAIAYAVRLRIPTSD*