Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0800340 | XP_003612221.1 | 97.596 | 416 | 10 | 0 | 1 | 416 | 1 | 416 | 0.0 | 848 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0800340 | sp|Q8L7E9|MCAC1_ARATH | 68.421 | 418 | 126 | 3 | 3 | 415 | 4 | 420 | 0.0 | 581 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0800340 | G7JXK8 | 97.596 | 416 | 10 | 0 | 1 | 416 | 1 | 416 | 0.0 | 848 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000990 | Msa0800340 | 0.998754 | 2.164960e-275 | -8.615850e-47 |
| Msa0690170 | Msa0800340 | 0.802177 | 6.349899e-49 | -8.615850e-47 |
| Msa0800340 | Msa1010730 | 0.811710 | 6.109975e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0800340 | MtrunA17_Chr5g0405841 | 97.596 | 416 | 10 | 0 | 1 | 416 | 1 | 416 | 0.0 | 848 |
| Msa0800340 | MtrunA17_Chr8g0371431 | 77.488 | 422 | 88 | 3 | 2 | 416 | 3 | 424 | 0.0 | 672 |
| Msa0800340 | MtrunA17_Chr8g0391431 | 33.645 | 107 | 70 | 1 | 294 | 399 | 51 | 157 | 3.18e-11 | 62.4 |
| Msa0800340 | MtrunA17_Chr2g0331531 | 27.841 | 176 | 98 | 5 | 259 | 414 | 3 | 169 | 4.58e-11 | 61.2 |
| Msa0800340 | MtrunA17_Chr5g0402421 | 31.061 | 132 | 87 | 2 | 272 | 399 | 29 | 160 | 5.09e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0800340 | AT4G35920.1 | 68.421 | 418 | 126 | 3 | 3 | 415 | 4 | 420 | 0.0 | 581 |
| Msa0800340 | AT4G35920.5 | 68.421 | 418 | 126 | 3 | 3 | 415 | 4 | 420 | 0.0 | 581 |
| Msa0800340 | AT4G35920.4 | 68.421 | 418 | 126 | 3 | 3 | 415 | 4 | 420 | 0.0 | 581 |
| Msa0800340 | AT4G35920.2 | 68.421 | 418 | 126 | 3 | 3 | 415 | 4 | 420 | 0.0 | 581 |
| Msa0800340 | AT4G35920.3 | 68.421 | 418 | 126 | 3 | 3 | 415 | 4 | 420 | 0.0 | 581 |
| Msa0800340 | AT2G17780.7 | 61.722 | 418 | 149 | 7 | 3 | 415 | 4 | 415 | 6.81e-178 | 503 |
| Msa0800340 | AT2G17780.6 | 61.722 | 418 | 149 | 7 | 3 | 415 | 4 | 415 | 6.81e-178 | 503 |
| Msa0800340 | AT2G17780.10 | 61.722 | 418 | 149 | 7 | 3 | 415 | 4 | 415 | 6.81e-178 | 503 |
| Msa0800340 | AT2G17780.5 | 61.722 | 418 | 149 | 7 | 3 | 415 | 4 | 415 | 6.81e-178 | 503 |
| Msa0800340 | AT2G17780.1 | 61.722 | 418 | 149 | 7 | 3 | 415 | 4 | 415 | 6.81e-178 | 503 |
| Msa0800340 | AT2G17780.2 | 61.538 | 416 | 151 | 6 | 3 | 415 | 4 | 413 | 4.64e-177 | 500 |
| Msa0800340 | AT2G17780.3 | 62.406 | 399 | 142 | 5 | 3 | 399 | 4 | 396 | 9.96e-174 | 492 |
| Msa0800340 | AT2G17780.9 | 62.406 | 399 | 142 | 5 | 3 | 399 | 4 | 396 | 9.96e-174 | 492 |
| Msa0800340 | AT2G17780.8 | 60.870 | 368 | 136 | 5 | 3 | 368 | 4 | 365 | 2.60e-153 | 439 |
| Msa0800340 | AT2G17780.4 | 59.223 | 309 | 118 | 5 | 3 | 309 | 4 | 306 | 1.21e-117 | 345 |
| Msa0800340 | AT5G35525.1 | 34.545 | 110 | 71 | 1 | 290 | 398 | 11 | 120 | 2.27e-11 | 62.0 |
| Msa0800340 | AT1G14870.1 | 33.028 | 109 | 72 | 1 | 290 | 397 | 11 | 119 | 2.78e-11 | 62.0 |
| Msa0800340 | AT3G18470.1 | 27.612 | 134 | 82 | 3 | 292 | 414 | 2 | 131 | 3.54e-11 | 61.2 |
Find 108 sgRNAs with CRISPR-Local
Find 289 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAATGATAATGCTATTTC+TGG | 0.108331 | 5_3:+13719919 | Msa0800340:five_prime_UTR |
| ACAATGTCATTTAGTTGTTT+AGG | 0.202753 | 5_3:+13724770 | Msa0800340:three_prime_UTR |
| ACAAAGGTCACAAGCAAATT+TGG | 0.213705 | 5_3:+13722146 | Msa0800340:CDS |
| AAGGCAAGAACCATGTATTT+TGG | 0.228382 | 5_3:+13724844 | Msa0800340:three_prime_UTR |
| CAATGTCATTTAGTTGTTTA+GGG | 0.257819 | 5_3:+13724771 | Msa0800340:three_prime_UTR |
| CGGTTGACATCATGTCCTTT+TGG | 0.261672 | 5_3:-13722541 | None:intergenic |
| TCCAGAGGCTCCCTAGTTTC+CGG | 0.297787 | 5_3:-13720564 | None:intergenic |
| GATGACAGACATTGCTTTGC+GGG | 0.316966 | 5_3:-13719494 | None:intergenic |
| GGAATATTGTTTATCAGTTC+AGG | 0.327510 | 5_3:+13720673 | Msa0800340:CDS |
| GATAGGTGGAGGGCTTGTTT+TGG | 0.331710 | 5_3:-13724719 | None:intergenic |
| GATGGCGTCGTGGGAACATA+TGG | 0.340322 | 5_3:+13720362 | Msa0800340:exon |
| CCAGAGGCTCCCTAGTTTCC+GGG | 0.365728 | 5_3:-13720563 | None:intergenic |
| TTGTGGACAATGCTCGAGTC+AGG | 0.368877 | 5_3:+13720748 | Msa0800340:CDS |
| GTTGCTATACTTGTTGCATT+AGG | 0.369664 | 5_3:+13723716 | Msa0800340:CDS |
| GCAATGCATTTGAAGTTGAT+TGG | 0.388921 | 5_3:+13720498 | Msa0800340:CDS |
| CACCCGTCAAAATGCGTCTT+AGG | 0.391384 | 5_3:-13725014 | None:intergenic |
| AGTCATTCAACGTTTATTAG+AGG | 0.401692 | 5_3:+13722185 | Msa0800340:CDS |
| GTATCCTCCTTGTCAGGATC+AGG | 0.403290 | 5_3:-13722030 | None:intergenic |
| CAATGCATTTGAAGTTGATT+GGG | 0.410219 | 5_3:+13720499 | Msa0800340:CDS |
| AGTAGCAGAGTATTCTCTTC+CGG | 0.418308 | 5_3:+13722215 | Msa0800340:CDS |
| TCGAAGTTACCTGTATTTGT+TGG | 0.422893 | 5_3:+13720641 | Msa0800340:CDS |
| CTTGTGACCTTTGTAGCTCT+AGG | 0.425566 | 5_3:-13722137 | None:intergenic |
| TTACTTAAGATTCCATGTAC+TGG | 0.427640 | 5_3:-13724741 | None:intergenic |
| CTTCTCTCCATTCTTGTACA+AGG | 0.437918 | 5_3:-13724393 | None:intergenic |
| GTGGAGATCCGTGGGGTTAG+TGG | 0.439025 | 5_3:+13724415 | Msa0800340:CDS |
| TGAAAGACCATTGTCATCAT+TGG | 0.439272 | 5_3:-13722292 | None:intergenic |
| TGAAGAGGTACCCGGAAACT+AGG | 0.442827 | 5_3:+13720553 | Msa0800340:CDS |
| ATCCCATTGCCAACAAATAC+AGG | 0.448284 | 5_3:-13720650 | None:intergenic |
| CCCGGAAACTAGGGAGCCTC+TGG | 0.448876 | 5_3:+13720563 | Msa0800340:CDS |
| AGAAGCATGTAATGAATTGA+TGG | 0.451145 | 5_3:+13723669 | Msa0800340:CDS |
| CGCTTCAGGGAAAGTACAGT+TGG | 0.453374 | 5_3:-13722088 | None:intergenic |
| TGTTCCTCTTATCACTCTTG+TGG | 0.458143 | 5_3:+13720731 | Msa0800340:CDS |
| TGGATACTCTTTCGCAATCA+AGG | 0.461231 | 5_3:+13722340 | Msa0800340:CDS |
| CAGATATTCTGTTTCCCAAA+AGG | 0.463290 | 5_3:+13722526 | Msa0800340:intron |
| GTTCATATCAGCAGGAAGAT+TGG | 0.466681 | 5_3:+13722567 | Msa0800340:CDS |
| GAACATACAAAGAGAAGGTT+CGG | 0.466900 | 5_3:-13722615 | None:intergenic |
| GAAGTTGATTGGGAACTTGT+TGG | 0.469906 | 5_3:+13720509 | Msa0800340:CDS |
| GCAAATATAGCGCAATTGAC+TGG | 0.470701 | 5_3:+13720393 | Msa0800340:CDS |
| CTACTGGCATTCTAACTTGA+AGG | 0.475757 | 5_3:+13724825 | Msa0800340:three_prime_UTR |
| ATGGCGTCGTGGGAACATAT+GGG | 0.476474 | 5_3:+13720363 | Msa0800340:CDS |
| AGGTTGATTCTCAGAGAAGA+TGG | 0.478170 | 5_3:+13720344 | Msa0800340:intron |
| ATTAGACGATGAGGACCAAC+AGG | 0.479377 | 5_3:+13721987 | Msa0800340:CDS |
| TTACCTGTATTTGTTGGCAA+TGG | 0.483761 | 5_3:+13720647 | Msa0800340:CDS |
| CAAAAGGACATGATGTCAAC+CGG | 0.483797 | 5_3:+13722542 | Msa0800340:CDS |
| CCCTCCACCTATCCAGTACA+TGG | 0.486096 | 5_3:+13724729 | Msa0800340:CDS |
| TACTTGCAGGAAATTGAAGA+AGG | 0.492263 | 5_3:-13719544 | None:intergenic |
| GCAACAAGTATAGCAACAAC+AGG | 0.494096 | 5_3:-13723710 | None:intergenic |
| TACCTGTATTTGTTGGCAAT+GGG | 0.494787 | 5_3:+13720648 | Msa0800340:CDS |
| AGTACAGTTGGGGTAAGAAC+AGG | 0.495891 | 5_3:-13722076 | None:intergenic |
| ACTGCAGTATCCTCCTTGTC+AGG | 0.505076 | 5_3:-13722036 | None:intergenic |
| GCTTCAGGGAAAGTACAGTT+GGG | 0.506385 | 5_3:-13722087 | None:intergenic |
| AACCGGAGGTTCATATCAGC+AGG | 0.512000 | 5_3:+13722559 | Msa0800340:CDS |
| ATTGTTATTTGCTTAATCAA+AGG | 0.512681 | 5_3:+13720008 | Msa0800340:five_prime_UTR |
| ATGTTGTGTAGCTTCTAGAT+TGG | 0.522186 | 5_3:+13724913 | Msa0800340:three_prime_UTR |
| TTCTCTCCATTCTTGTACAA+GGG | 0.527375 | 5_3:-13724392 | None:intergenic |
| CTCAGAGAAGATGGCGTCGT+GGG | 0.529686 | 5_3:+13720353 | Msa0800340:exon |
| TTTAGTTGTTTAGGGATCCA+AGG | 0.531045 | 5_3:+13724779 | Msa0800340:three_prime_UTR |
| TTCCTGCTGATATGAACCTC+CGG | 0.532068 | 5_3:-13722561 | None:intergenic |
| ACTCAGAAGGTCTTATATGT+TGG | 0.532293 | 5_3:+13720602 | Msa0800340:CDS |
| AGACATTATGTAGAGGCTAC+TGG | 0.533396 | 5_3:+13724809 | Msa0800340:three_prime_UTR |
| ATACATACATAATTTAAAAG+AGG | 0.534382 | 5_3:-13724883 | None:intergenic |
| GTAGATGCTGTGAAGTTGAT+TGG | 0.535227 | 5_3:+13720417 | Msa0800340:CDS |
| CTCTGAGCTGAAGAGGTACC+CGG | 0.535961 | 5_3:+13720545 | Msa0800340:CDS |
| GGAGAGAAGTGGAGATCCGT+GGG | 0.536935 | 5_3:+13724407 | Msa0800340:CDS |
| TGATGACAGACATTGCTTTG+CGG | 0.537015 | 5_3:-13719495 | None:intergenic |
| TCCATGTACTGGATAGGTGG+AGG | 0.545948 | 5_3:-13724730 | None:intergenic |
| TGGCGTCGTGGGAACATATG+GGG | 0.551313 | 5_3:+13720364 | Msa0800340:CDS |
| GGTTATTGAACATGATCAGC+GGG | 0.551617 | 5_3:+13721957 | Msa0800340:CDS |
| AAGACATTCTTCTATCCTTG+TGG | 0.553618 | 5_3:+13723296 | Msa0800340:CDS |
| TGTGGACAATGCTCGAGTCA+GGG | 0.553689 | 5_3:+13720749 | Msa0800340:CDS |
| TTGTCCACAAGAGTGATAAG+AGG | 0.560131 | 5_3:-13720735 | None:intergenic |
| GAAGAGGTACCCGGAAACTA+GGG | 0.561185 | 5_3:+13720554 | Msa0800340:CDS |
| TAAGATTCCATGTACTGGAT+AGG | 0.565338 | 5_3:-13724736 | None:intergenic |
| GTTGCATTAGGAGAAAGCTT+CGG | 0.573745 | 5_3:+13723728 | Msa0800340:CDS |
| GCATCTTCAAGCTGCTCCAG+AGG | 0.575225 | 5_3:-13720579 | None:intergenic |
| GTTGTGCCCTTGTACAAGAA+TGG | 0.575953 | 5_3:+13724386 | Msa0800340:CDS |
| GATTCCATGTACTGGATAGG+TGG | 0.585710 | 5_3:-13724733 | None:intergenic |
| AGCTTGAAGATGCACTCAGA+AGG | 0.586177 | 5_3:+13720589 | Msa0800340:CDS |
| AGCTTAACCTAGAGCTACAA+AGG | 0.587180 | 5_3:+13722130 | Msa0800340:CDS |
| TTCATTACATGCTTCTGCAG+AGG | 0.589574 | 5_3:-13723662 | None:intergenic |
| GCTCATTCAGGAGAGACTTG+AGG | 0.591000 | 5_3:+13721936 | Msa0800340:intron |
| TCAAGATCTCTGAGCTGAAG+AGG | 0.593903 | 5_3:+13720538 | Msa0800340:CDS |
| AAATAACTGTGTGCGCCTGT+TGG | 0.596782 | 5_3:-13722002 | None:intergenic |
| TGGAGAGAAGTGGAGATCCG+TGG | 0.601083 | 5_3:+13724406 | Msa0800340:CDS |
| TTTAAAACCTGATCCTGACA+AGG | 0.603010 | 5_3:+13722023 | Msa0800340:CDS |
| GGAGAGAACATACAAAGAGA+AGG | 0.604050 | 5_3:-13722620 | None:intergenic |
| ACTTGCAGGAAATTGAAGAA+GGG | 0.604207 | 5_3:-13719543 | None:intergenic |
| TGTATTTGTTGGCAATGGGA+TGG | 0.606590 | 5_3:+13720652 | Msa0800340:CDS |
| TGTACAAGAATGGAGAGAAG+TGG | 0.606865 | 5_3:+13724396 | Msa0800340:CDS |
| AAGAATGGAAGATTTGACGC+TGG | 0.620697 | 5_3:-13719969 | None:intergenic |
| CCATGTACTGGATAGGTGGA+GGG | 0.623104 | 5_3:-13724729 | None:intergenic |
| ACAGTGAGAACCAAAATACA+TGG | 0.626903 | 5_3:-13724854 | None:intergenic |
| TATTGTTTATCAGTTCAGGA+AGG | 0.633802 | 5_3:+13720677 | Msa0800340:CDS |
| ATCTTTGAAAATGTTCCACA+AGG | 0.635888 | 5_3:-13723311 | None:intergenic |
| TCCTAAAAGACATTATGTAG+AGG | 0.638908 | 5_3:+13724802 | Msa0800340:three_prime_UTR |
| GGCGTCGTGGGAACATATGG+GGG | 0.639992 | 5_3:+13720365 | Msa0800340:CDS |
| TCTCAGAGAAGATGGCGTCG+TGG | 0.648065 | 5_3:+13720352 | Msa0800340:exon |
| AAACAAAACAAAGAGTAGAG+TGG | 0.658970 | 5_3:+13719442 | Msa0800340:five_prime_UTR |
| AAAACCTGATCCTGACAAGG+AGG | 0.668934 | 5_3:+13722026 | Msa0800340:CDS |
| TCTGATGCCAATGATGACAA+TGG | 0.675518 | 5_3:+13722285 | Msa0800340:CDS |
| GGAATACACATTAGACGATG+AGG | 0.676469 | 5_3:+13721978 | Msa0800340:CDS |
| AGGTTATTGAACATGATCAG+CGG | 0.676879 | 5_3:+13721956 | Msa0800340:CDS |
| AAGACATACCACTAACCCCA+CGG | 0.680905 | 5_3:-13724423 | None:intergenic |
| TGATAAGAGGAACAAGACGT+AGG | 0.682558 | 5_3:-13720722 | None:intergenic |
| CTTCAGGGAAAGTACAGTTG+GGG | 0.689261 | 5_3:-13722086 | None:intergenic |
| TGAAAGCTGCAAGTACTGCA+AGG | 0.698868 | 5_3:+13720448 | Msa0800340:CDS |
| AAGGACATGATGTCAACCGG+AGG | 0.716306 | 5_3:+13722545 | Msa0800340:CDS |
| GAGAGAAGTGGAGATCCGTG+GGG | 0.788408 | 5_3:+13724408 | Msa0800340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTTTATATTTTATTT+TGG | + | chr5_3:13719835-13719854 | Msa0800340:intron | 0.0% |
| !! | AAAGAAAATAATAAAAAAAG+AGG | - | chr5_3:13719697-13719716 | None:intergenic | 10.0% |
| !!! | TATATTTTATTTTGGTAATT+AGG | + | chr5_3:13719843-13719862 | Msa0800340:intron | 10.0% |
| !! | AATAAAATTACGATAAAATA+AGG | + | chr5_3:13724231-13724250 | Msa0800340:intron | 10.0% |
| !!! | TTATTAATATTTTGTTTTCA+TGG | + | chr5_3:13724943-13724962 | Msa0800340:three_prime_UTR | 10.0% |
| !!! | TTTGATGCATTTTTTTTTTT+GGG | + | chr5_3:13720219-13720238 | Msa0800340:intron | 15.0% |
| !! | AGAAAATGAAAATTAATAAG+TGG | - | chr5_3:13720987-13721006 | None:intergenic | 15.0% |
| !!! | CTTATTAATTTTCATTTTCT+TGG | + | chr5_3:13720987-13721006 | Msa0800340:intron | 15.0% |
| !!! | ATTAAGTAGTTTAGTTTTTT+TGG | + | chr5_3:13721253-13721272 | Msa0800340:intron | 15.0% |
| !!! | ATAACTTATAAAGCTTTTTA+TGG | + | chr5_3:13723871-13723890 | Msa0800340:intron | 15.0% |
| !! | TATGAAATATTTAAAAAGAC+TGG | - | chr5_3:13724297-13724316 | None:intergenic | 15.0% |
| !! | ATACATACATAATTTAAAAG+AGG | - | chr5_3:13724886-13724905 | None:intergenic | 15.0% |
| !!! | GTGTTCAATTTTCTTTTTTT+AGG | + | chr5_3:13719810-13719829 | Msa0800340:intron | 20.0% |
| !!! | ATTGTTATTTGCTTAATCAA+AGG | + | chr5_3:13720008-13720027 | Msa0800340:five_prime_UTR | 20.0% |
| !!! | TTTGATGCATGTTTTTTTTT+AGG | + | chr5_3:13720075-13720094 | Msa0800340:intron | 20.0% |
| !!! | ATTTTTGTTATTGTTGTTGA+TGG | + | chr5_3:13720105-13720124 | Msa0800340:intron | 20.0% |
| !!! | CTTTGATGCATTTTTTTTTT+TGG | + | chr5_3:13720218-13720237 | Msa0800340:intron | 20.0% |
| !!! | TTTGTGATTTTCTACTAATT+TGG | + | chr5_3:13720849-13720868 | Msa0800340:intron | 20.0% |
| !!! | TTGTGATTTTCTACTAATTT+GGG | + | chr5_3:13720850-13720869 | Msa0800340:intron | 20.0% |
| !! | AACTACTTAATATAGTTATC+TGG | - | chr5_3:13721244-13721263 | None:intergenic | 20.0% |
| !! | TTTGTTTAAATAGCATTTGA+CGG | + | chr5_3:13721395-13721414 | Msa0800340:intron | 20.0% |
| !!! | TATTATTTTCTGTCATGATA+AGG | + | chr5_3:13721536-13721555 | Msa0800340:intron | 20.0% |
| !! | ATAGTACTGCTTATTAAAAA+GGG | - | chr5_3:13721675-13721694 | None:intergenic | 20.0% |
| !! | TATAGTACTGCTTATTAAAA+AGG | - | chr5_3:13721676-13721695 | None:intergenic | 20.0% |
| !!! | ATTAATCTTCCTTACTATTT+TGG | + | chr5_3:13722454-13722473 | Msa0800340:intron | 20.0% |
| !!! | AAACTTTTAAAATATCAAGC+AGG | - | chr5_3:13722644-13722663 | None:intergenic | 20.0% |
| !!! | TGCTTGATATTTTAAAAGTT+TGG | + | chr5_3:13722643-13722662 | Msa0800340:intron | 20.0% |
| !! | ATAATTCATGAGAGTAATTA+GGG | - | chr5_3:13722797-13722816 | None:intergenic | 20.0% |
| !!! | ATACGATGATTTTTTTAACT+AGG | + | chr5_3:13723009-13723028 | Msa0800340:intron | 20.0% |
| !! | GAATATTGAATTAGATTAGA+TGG | + | chr5_3:13723051-13723070 | Msa0800340:intron | 20.0% |
| !!! | CTGTTTTACTAAAAACATAA+GGG | - | chr5_3:13723143-13723162 | None:intergenic | 20.0% |
| !!! | TCTGTTTTACTAAAAACATA+AGG | - | chr5_3:13723144-13723163 | None:intergenic | 20.0% |
| !! | TTTAGTAAAACAGAAAGATA+AGG | + | chr5_3:13723150-13723169 | Msa0800340:intron | 20.0% |
| !! | TAAGAAAATCAACTAAAGAT+AGG | + | chr5_3:13723211-13723230 | Msa0800340:intron | 20.0% |
| !!! | TACTTTTCATTCTTAGTAAT+TGG | + | chr5_3:13723249-13723268 | Msa0800340:intron | 20.0% |
| !! | TGATAAGAAATAACCATTTA+GGG | - | chr5_3:13724642-13724661 | None:intergenic | 20.0% |
| !! | TTGATAAGAAATAACCATTT+AGG | - | chr5_3:13724643-13724662 | None:intergenic | 20.0% |
| !!! | TTGAATGATAATGCTATTTC+TGG | + | chr5_3:13719919-13719938 | Msa0800340:five_prime_UTR | 25.0% |
| ! | TGCAGAAAAAATCTTAAGAA+TGG | - | chr5_3:13719987-13720006 | None:intergenic | 25.0% |
| !! | TGTGATTTTCTACTAATTTG+GGG | + | chr5_3:13720851-13720870 | Msa0800340:intron | 25.0% |
| !! | GGAAGCATGTAATATATATT+AGG | + | chr5_3:13721557-13721576 | Msa0800340:intron | 25.0% |
| ! | AATTTCAATCACATTGTTTC+TGG | + | chr5_3:13721783-13721802 | Msa0800340:intron | 25.0% |
| !!! | TTTCTTTTTTAATCGCTTCA+GGG | - | chr5_3:13722104-13722123 | None:intergenic | 25.0% |
| !!! | TTTTCTTTTTTAATCGCTTC+AGG | - | chr5_3:13722105-13722124 | None:intergenic | 25.0% |
| ! | TGAAGCGATTAAAAAAGAAA+AGG | + | chr5_3:13722104-13722123 | Msa0800340:CDS | 25.0% |
| !!! | TCTTTCTTATGACTTTTTTC+AGG | - | chr5_3:13722252-13722271 | None:intergenic | 25.0% |
| ! | AATTATGATTTCTGCTTAAC+TGG | - | chr5_3:13722420-13722439 | None:intergenic | 25.0% |
| ! | AGTTAATGACCAAAATAGTA+AGG | - | chr5_3:13722466-13722485 | None:intergenic | 25.0% |
| ! | GATATATTACCTGTACATTA+TGG | + | chr5_3:13722696-13722715 | Msa0800340:intron | 25.0% |
| ! | TAATTCATGAGAGTAATTAG+GGG | - | chr5_3:13722796-13722815 | None:intergenic | 25.0% |
| ! | CATAATTCATGAGAGTAATT+AGG | - | chr5_3:13722798-13722817 | None:intergenic | 25.0% |
| ! | GTAACACTTATATATGTCTT+GGG | - | chr5_3:13722829-13722848 | None:intergenic | 25.0% |
| ! | TGTAACACTTATATATGTCT+TGG | - | chr5_3:13722830-13722849 | None:intergenic | 25.0% |
| ! | AAGACATATATAAGTGTTAC+AGG | + | chr5_3:13722829-13722848 | Msa0800340:intron | 25.0% |
| ! | TAATTGAGTGAGTCAAAATT+TGG | - | chr5_3:13722930-13722949 | None:intergenic | 25.0% |
| !! | AATGAAAAGTATAGAGAGAT+TGG | - | chr5_3:13723240-13723259 | None:intergenic | 25.0% |
| ! | TTAGTAATTGGTATAGCATT+TGG | + | chr5_3:13723261-13723280 | Msa0800340:intron | 25.0% |
| ! | AAGATAGCTAACTTACAAAT+GGG | - | chr5_3:13723359-13723378 | None:intergenic | 25.0% |
| ! | TAGAAATTAGTGAATCAAGT+TGG | + | chr5_3:13723439-13723458 | Msa0800340:intron | 25.0% |
| ! | GAAAATCATGTCTTCATTAT+AGG | - | chr5_3:13723486-13723505 | None:intergenic | 25.0% |
| ! | AACAAGTCATATTTATGCAA+AGG | - | chr5_3:13723790-13723809 | None:intergenic | 25.0% |
| !!! | TTTTATGGTACCATTTTTTG+TGG | + | chr5_3:13723886-13723905 | Msa0800340:intron | 25.0% |
| ! | CATGTATATGAAAATAGTTG+TGG | - | chr5_3:13723962-13723981 | None:intergenic | 25.0% |
| !! | TCGTAATTTTATTGTGTTGT+AGG | - | chr5_3:13724224-13724243 | None:intergenic | 25.0% |
| !! | TTAATCGTAGTTACTTTCTA+TGG | + | chr5_3:13724317-13724336 | Msa0800340:intron | 25.0% |
| ! | ATAGTAAGATGAAGAATACA+TGG | - | chr5_3:13724573-13724592 | None:intergenic | 25.0% |
| !! | ACAATGTCATTTAGTTGTTT+AGG | + | chr5_3:13724770-13724789 | Msa0800340:three_prime_UTR | 25.0% |
| !! | CAATGTCATTTAGTTGTTTA+GGG | + | chr5_3:13724771-13724790 | Msa0800340:three_prime_UTR | 25.0% |
| AAACAAAACAAAGAGTAGAG+TGG | + | chr5_3:13719442-13719461 | Msa0800340:five_prime_UTR | 30.0% | |
| TAGTGAAAGTTATTACTTGC+AGG | - | chr5_3:13719560-13719579 | None:intergenic | 30.0% | |
| ! | CAATTTCTCTAGTTTAGCTA+TGG | + | chr5_3:13719733-13719752 | Msa0800340:intron | 30.0% |
| ! | ATGGATTTCAATTTTCATGC+TGG | + | chr5_3:13719752-13719771 | Msa0800340:intron | 30.0% |
| !! | AATGCAATTTTGACGCTATA+AGG | + | chr5_3:13720159-13720178 | Msa0800340:intron | 30.0% |
| ! | CAATGCATTTGAAGTTGATT+GGG | + | chr5_3:13720499-13720518 | Msa0800340:CDS | 30.0% |
| GGAATATTGTTTATCAGTTC+AGG | + | chr5_3:13720673-13720692 | Msa0800340:CDS | 30.0% | |
| TATTGTTTATCAGTTCAGGA+AGG | + | chr5_3:13720677-13720696 | Msa0800340:CDS | 30.0% | |
| AAGCATATTGAGTGAGTAAT+TGG | + | chr5_3:13720924-13720943 | Msa0800340:intron | 30.0% | |
| CACTTATTTACTAGATTGTC+CGG | + | chr5_3:13721095-13721114 | Msa0800340:intron | 30.0% | |
| ACTTATTTACTAGATTGTCC+GGG | + | chr5_3:13721096-13721115 | Msa0800340:intron | 30.0% | |
| ATTCCTGGTTTATGAAAATC+TGG | + | chr5_3:13721179-13721198 | Msa0800340:intron | 30.0% | |
| TTCCTGGTTTATGAAAATCT+GGG | + | chr5_3:13721180-13721199 | Msa0800340:intron | 30.0% | |
| !!! | ATGTTTTAGTTGCATCTTTG+TGG | + | chr5_3:13721614-13721633 | Msa0800340:intron | 30.0% |
| AGCAGTACTATATAAAGAAG+TGG | + | chr5_3:13721684-13721703 | Msa0800340:intron | 30.0% | |
| TTGCTCAATTGATTACAACT+TGG | - | chr5_3:13721714-13721733 | None:intergenic | 30.0% | |
| CATATTTCCCTACATTTGTA+AGG | + | chr5_3:13721812-13721831 | Msa0800340:intron | 30.0% | |
| TCTAAGTCCTTACAAATGTA+GGG | - | chr5_3:13721822-13721841 | None:intergenic | 30.0% | |
| AGTTAGTGACAATATAACAC+AGG | - | chr5_3:13721845-13721864 | None:intergenic | 30.0% | |
| ACCAACCAAATTTACACATT+CGG | - | chr5_3:13721885-13721904 | None:intergenic | 30.0% | |
| AGTCATTCAACGTTTATTAG+AGG | + | chr5_3:13722185-13722204 | Msa0800340:CDS | 30.0% | |
| TGAAAAATACCATGCAAAAG+TGG | + | chr5_3:13722320-13722339 | Msa0800340:CDS | 30.0% | |
| ! | TAACTTATATCGACTGTGTT+TGG | + | chr5_3:13722481-13722500 | Msa0800340:intron | 30.0% |
| TGACATAATGAAAATGCACA+AGG | - | chr5_3:13722756-13722775 | None:intergenic | 30.0% | |
| TTTACCTTACAAGTTAACTC+AGG | + | chr5_3:13723074-13723093 | Msa0800340:intron | 30.0% | |
| !!! | AGGGTTTTTTAATGTTCAGT+GGG | - | chr5_3:13723124-13723143 | None:intergenic | 30.0% |
| !!! | AAGGGTTTTTTAATGTTCAG+TGG | - | chr5_3:13723125-13723144 | None:intergenic | 30.0% |
| ! | CATGTTTTTCTTCTGTTCAT+AGG | - | chr5_3:13723178-13723197 | None:intergenic | 30.0% |
| CTATGAACAGAAGAAAAACA+TGG | + | chr5_3:13723176-13723195 | Msa0800340:intron | 30.0% | |
| ! | ATCTTTGAAAATGTTCCACA+AGG | - | chr5_3:13723314-13723333 | None:intergenic | 30.0% |
| TTGCTACAGTTGTAAAAAAC+AGG | + | chr5_3:13723333-13723352 | Msa0800340:CDS | 30.0% | |
| CAAGATAGCTAACTTACAAA+TGG | - | chr5_3:13723360-13723379 | None:intergenic | 30.0% | |
| TAACTTATGAGATAATGCCA+AGG | + | chr5_3:13723526-13723545 | Msa0800340:intron | 30.0% | |
| AACTTATGAGATAATGCCAA+GGG | + | chr5_3:13723527-13723546 | Msa0800340:intron | 30.0% | |
| ! | TATGTTGCTTATATTCTCAC+TGG | + | chr5_3:13723555-13723574 | Msa0800340:intron | 30.0% |
| CAAACACTAAAACATTATCG+AGG | + | chr5_3:13723606-13723625 | Msa0800340:intron | 30.0% | |
| ! | AGAAGCATGTAATGAATTGA+TGG | + | chr5_3:13723669-13723688 | Msa0800340:CDS | 30.0% |
| TATTTATGCAAAGGAAAGGA+AGG | - | chr5_3:13723781-13723800 | None:intergenic | 30.0% | |
| GTCATATTTATGCAAAGGAA+AGG | - | chr5_3:13723785-13723804 | None:intergenic | 30.0% | |
| TATAAAAATCCACAAACACG+AGG | - | chr5_3:13723827-13723846 | None:intergenic | 30.0% | |
| ! | TAACTTGTGACTTCTAATCT+AGG | - | chr5_3:13724165-13724184 | None:intergenic | 30.0% |
| ! | AAGGTATTTGTTAAGACTTG+AGG | + | chr5_3:13724250-13724269 | Msa0800340:intron | 30.0% |
| AGTACAGTAAGATGAAGAAT+AGG | - | chr5_3:13724450-13724469 | None:intergenic | 30.0% | |
| ATTTCTTATCAATGCTCAAG+TGG | + | chr5_3:13724651-13724670 | Msa0800340:intron | 30.0% | |
| ! | TTGATATTTAACCGTTTTGC+AGG | + | chr5_3:13724685-13724704 | Msa0800340:intron | 30.0% |
| TTACTTAAGATTCCATGTAC+TGG | - | chr5_3:13724744-13724763 | None:intergenic | 30.0% | |
| TCCTAAAAGACATTATGTAG+AGG | + | chr5_3:13724802-13724821 | Msa0800340:three_prime_UTR | 30.0% | |
| ! | CGTGAAAAAGCATAGAATTC+AGG | - | chr5_3:13719521-13719540 | None:intergenic | 35.0% |
| ACTTGCAGGAAATTGAAGAA+GGG | - | chr5_3:13719546-13719565 | None:intergenic | 35.0% | |
| TACTTGCAGGAAATTGAAGA+AGG | - | chr5_3:13719547-13719566 | None:intergenic | 35.0% | |
| ! | GCAATGCATTTGAAGTTGAT+TGG | + | chr5_3:13720498-13720517 | Msa0800340:CDS | 35.0% |
| ! | ACTCAGAAGGTCTTATATGT+TGG | + | chr5_3:13720602-13720621 | Msa0800340:CDS | 35.0% |
| TCGAAGTTACCTGTATTTGT+TGG | + | chr5_3:13720641-13720660 | Msa0800340:CDS | 35.0% | |
| ! | TTACCTGTATTTGTTGGCAA+TGG | + | chr5_3:13720647-13720666 | Msa0800340:CDS | 35.0% |
| ! | TACCTGTATTTGTTGGCAAT+GGG | + | chr5_3:13720648-13720667 | Msa0800340:CDS | 35.0% |
| TTGAGTGAGTAATTGGCAAA+TGG | + | chr5_3:13720931-13720950 | Msa0800340:intron | 35.0% | |
| CGGACAATCTAGTAAATAAG+TGG | - | chr5_3:13721097-13721116 | None:intergenic | 35.0% | |
| ! | CCAGGAATTTTCATTTCACT+GGG | - | chr5_3:13721167-13721186 | None:intergenic | 35.0% |
| ! | ACCAGGAATTTTCATTTCAC+TGG | - | chr5_3:13721168-13721187 | None:intergenic | 35.0% |
| ! | ATCCCAGATTTTCATAAACC+AGG | - | chr5_3:13721185-13721204 | None:intergenic | 35.0% |
| TCCTAGCTACTATGCATAAA+TGG | + | chr5_3:13721300-13721319 | Msa0800340:intron | 35.0% | |
| CCTAGCTACTATGCATAAAT+GGG | + | chr5_3:13721301-13721320 | Msa0800340:intron | 35.0% | |
| TGTTCATGTATGCAGAAGAA+GGG | - | chr5_3:13721493-13721512 | None:intergenic | 35.0% | |
| TTGTTCATGTATGCAGAAGA+AGG | - | chr5_3:13721494-13721513 | None:intergenic | 35.0% | |
| TAGGATTCAACTCATTTGTC+AGG | + | chr5_3:13721576-13721595 | Msa0800340:intron | 35.0% | |
| CCAAAACCAACTCTATCTAA+AGG | - | chr5_3:13721641-13721660 | None:intergenic | 35.0% | |
| !! | CCTTTAGATAGAGTTGGTTT+TGG | + | chr5_3:13721638-13721657 | Msa0800340:intron | 35.0% |
| ACATCTCTCACAAACATGAT+TGG | - | chr5_3:13721742-13721761 | None:intergenic | 35.0% | |
| GTCTAAGTCCTTACAAATGT+AGG | - | chr5_3:13721823-13721842 | None:intergenic | 35.0% | |
| AGCATCCGAATGTGTAAATT+TGG | + | chr5_3:13721877-13721896 | Msa0800340:intron | 35.0% | |
| TCCGAATGTGTAAATTTGGT+TGG | + | chr5_3:13721881-13721900 | Msa0800340:intron | 35.0% | |
| !! | AATTGCTTTTCTGCTCATTC+AGG | + | chr5_3:13721924-13721943 | Msa0800340:intron | 35.0% |
| AGGTTATTGAACATGATCAG+CGG | + | chr5_3:13721956-13721975 | Msa0800340:CDS | 35.0% | |
| ! | TTTAAAACCTGATCCTGACA+AGG | + | chr5_3:13722023-13722042 | Msa0800340:CDS | 35.0% |
| ACAAAGGTCACAAGCAAATT+TGG | + | chr5_3:13722146-13722165 | Msa0800340:CDS | 35.0% | |
| TGAAAGACCATTGTCATCAT+TGG | - | chr5_3:13722295-13722314 | None:intergenic | 35.0% | |
| !!! | AAAGAGTATCCACTTTTGCA+TGG | - | chr5_3:13722332-13722351 | None:intergenic | 35.0% |
| !! | GTGTTTGGTGCTTATATACA+TGG | + | chr5_3:13722496-13722515 | Msa0800340:intron | 35.0% |
| CAGATATTCTGTTTCCCAAA+AGG | + | chr5_3:13722526-13722545 | Msa0800340:intron | 35.0% | |
| GAACATACAAAGAGAAGGTT+CGG | - | chr5_3:13722618-13722637 | None:intergenic | 35.0% | |
| AATAGCGAACCATAATGTAC+AGG | - | chr5_3:13722708-13722727 | None:intergenic | 35.0% | |
| AATTAGCCCTTATGTCTTTG+TGG | + | chr5_3:13722945-13722964 | Msa0800340:intron | 35.0% | |
| AAGACATTCTTCTATCCTTG+TGG | + | chr5_3:13723296-13723315 | Msa0800340:CDS | 35.0% | |
| ! | GTTGCTATACTTGTTGCATT+AGG | + | chr5_3:13723716-13723735 | Msa0800340:CDS | 35.0% |
| TTACACAGCACCACAAAAAA+TGG | - | chr5_3:13723899-13723918 | None:intergenic | 35.0% | |
| ATAATGTATTTGTCGAGCCT+TGG | + | chr5_3:13724112-13724131 | Msa0800340:intron | 35.0% | |
| ! | TCGTAGTTACTTTCTATGGT+AGG | + | chr5_3:13724321-13724340 | Msa0800340:intron | 35.0% |
| ! | CGTAGTTACTTTCTATGGTA+GGG | + | chr5_3:13724322-13724341 | Msa0800340:intron | 35.0% |
| ! | GTAGTTACTTTCTATGGTAG+GGG | + | chr5_3:13724323-13724342 | Msa0800340:intron | 35.0% |
| ! | TAGTTACTTTCTATGGTAGG+GGG | + | chr5_3:13724324-13724343 | Msa0800340:intron | 35.0% |
| TTCTCTCCATTCTTGTACAA+GGG | - | chr5_3:13724395-13724414 | None:intergenic | 35.0% | |
| ATTGAACAGCTTGCATGATA+AGG | - | chr5_3:13724503-13724522 | None:intergenic | 35.0% | |
| ! | AATTTTACAGCAAGTGCAAC+AGG | - | chr5_3:13724535-13724554 | None:intergenic | 35.0% |
| AGATGAAGAATACATGGTTC+TGG | - | chr5_3:13724567-13724586 | None:intergenic | 35.0% | |
| !! | GTAGCTTTTTAAGCCCTAAA+TGG | + | chr5_3:13724626-13724645 | Msa0800340:intron | 35.0% |
| TAAGATTCCATGTACTGGAT+AGG | - | chr5_3:13724739-13724758 | None:intergenic | 35.0% | |
| TTTAGTTGTTTAGGGATCCA+AGG | + | chr5_3:13724779-13724798 | Msa0800340:three_prime_UTR | 35.0% | |
| !!! | CATAATGTCTTTTAGGACCT+TGG | - | chr5_3:13724799-13724818 | None:intergenic | 35.0% |
| ! | GCCTCTACATAATGTCTTTT+AGG | - | chr5_3:13724806-13724825 | None:intergenic | 35.0% |
| ! | AAGGCAAGAACCATGTATTT+TGG | + | chr5_3:13724844-13724863 | Msa0800340:three_prime_UTR | 35.0% |
| ACAGTGAGAACCAAAATACA+TGG | - | chr5_3:13724857-13724876 | None:intergenic | 35.0% | |
| ATGTTGTGTAGCTTCTAGAT+TGG | + | chr5_3:13724913-13724932 | Msa0800340:three_prime_UTR | 35.0% | |
| ! | ATTCCTAAGACGCATTTTGA+CGG | + | chr5_3:13725011-13725030 | Msa0800340:three_prime_UTR | 35.0% |
| TGATGACAGACATTGCTTTG+CGG | - | chr5_3:13719498-13719517 | None:intergenic | 40.0% | |
| AAGAATGGAAGATTTGACGC+TGG | - | chr5_3:13719972-13719991 | None:intergenic | 40.0% | |
| ! | AGCTGATGTGGCTTGATTTT+AGG | + | chr5_3:13720324-13720343 | Msa0800340:intron | 40.0% |
| ! | AGGTTGATTCTCAGAGAAGA+TGG | + | chr5_3:13720344-13720363 | Msa0800340:intron | 40.0% |
| GCAAATATAGCGCAATTGAC+TGG | + | chr5_3:13720393-13720412 | Msa0800340:CDS | 40.0% | |
| ! | GTAGATGCTGTGAAGTTGAT+TGG | + | chr5_3:13720417-13720436 | Msa0800340:CDS | 40.0% |
| ! | GAAGTTGATTGGGAACTTGT+TGG | + | chr5_3:13720509-13720528 | Msa0800340:CDS | 40.0% |
| ATCCCATTGCCAACAAATAC+AGG | - | chr5_3:13720653-13720672 | None:intergenic | 40.0% | |
| ! | TGTATTTGTTGGCAATGGGA+TGG | + | chr5_3:13720652-13720671 | Msa0800340:CDS | 40.0% |
| TGATAAGAGGAACAAGACGT+AGG | - | chr5_3:13720725-13720744 | None:intergenic | 40.0% | |
| TGTTCCTCTTATCACTCTTG+TGG | + | chr5_3:13720731-13720750 | Msa0800340:CDS | 40.0% | |
| TTGTCCACAAGAGTGATAAG+AGG | - | chr5_3:13720738-13720757 | None:intergenic | 40.0% | |
| TCTGCTATCTCTTGTGTGAA+TGG | + | chr5_3:13720783-13720802 | Msa0800340:intron | 40.0% | |
| ACTCACTCAATATGCTTGCA+TGG | - | chr5_3:13720921-13720940 | None:intergenic | 40.0% | |
| ATTTACTAGATTGTCCGGGT+CGG | + | chr5_3:13721100-13721119 | Msa0800340:intron | 40.0% | |
| CACCTGCCATACGAAAATAT+TGG | + | chr5_3:13721141-13721160 | Msa0800340:intron | 40.0% | |
| ! | ACTGGGCCAATATTTTCGTA+TGG | - | chr5_3:13721150-13721169 | None:intergenic | 40.0% |
| CCCAGTGAAATGAAAATTCC+TGG | + | chr5_3:13721164-13721183 | Msa0800340:intron | 40.0% | |
| CCCATTTATGCATAGTAGCT+AGG | - | chr5_3:13721304-13721323 | None:intergenic | 40.0% | |
| TGTGGTCCTTTAGATAGAGT+TGG | + | chr5_3:13721632-13721651 | Msa0800340:intron | 40.0% | |
| GGTTATTGAACATGATCAGC+GGG | + | chr5_3:13721957-13721976 | Msa0800340:CDS | 40.0% | |
| GGAATACACATTAGACGATG+AGG | + | chr5_3:13721978-13721997 | Msa0800340:CDS | 40.0% | |
| AGCTTAACCTAGAGCTACAA+AGG | + | chr5_3:13722130-13722149 | Msa0800340:CDS | 40.0% | |
| ! | AGTAGCAGAGTATTCTCTTC+CGG | + | chr5_3:13722215-13722234 | Msa0800340:CDS | 40.0% |
| !!! | TTTTCAGGTGAACACTTGTC+CGG | - | chr5_3:13722237-13722256 | None:intergenic | 40.0% |
| TCTGATGCCAATGATGACAA+TGG | + | chr5_3:13722285-13722304 | Msa0800340:CDS | 40.0% | |
| TGGATACTCTTTCGCAATCA+AGG | + | chr5_3:13722340-13722359 | Msa0800340:CDS | 40.0% | |
| TTTCCCTCTTCGACAACTTA+AGG | + | chr5_3:13722370-13722389 | Msa0800340:intron | 40.0% | |
| ! | ACACCTTAAGTTGTCGAAGA+GGG | - | chr5_3:13722376-13722395 | None:intergenic | 40.0% |
| ! | AACACCTTAAGTTGTCGAAG+AGG | - | chr5_3:13722377-13722396 | None:intergenic | 40.0% |
| !! | TCGACAACTTAAGGTGTTGT+AGG | + | chr5_3:13722379-13722398 | Msa0800340:intron | 40.0% |
| !! | AAGGTGTTGTAGGTTCACTT+AGG | + | chr5_3:13722389-13722408 | Msa0800340:intron | 40.0% |
| ! | GGTTGACATCATGTCCTTTT+GGG | - | chr5_3:13722543-13722562 | None:intergenic | 40.0% |
| CAAAAGGACATGATGTCAAC+CGG | + | chr5_3:13722542-13722561 | Msa0800340:CDS | 40.0% | |
| GTTCATATCAGCAGGAAGAT+TGG | + | chr5_3:13722567-13722586 | Msa0800340:CDS | 40.0% | |
| GGAGAGAACATACAAAGAGA+AGG | - | chr5_3:13722623-13722642 | None:intergenic | 40.0% | |
| CACAAGCCACAAAGACATAA+GGG | - | chr5_3:13722954-13722973 | None:intergenic | 40.0% | |
| !! | CATGCCTGAGTTAACTTGTA+AGG | - | chr5_3:13723081-13723100 | None:intergenic | 40.0% |
| TCAGGCATGAGTAATTGTCA+AGG | + | chr5_3:13723092-13723111 | Msa0800340:intron | 40.0% | |
| TAAGCAACATAGAGAACCCT+TGG | - | chr5_3:13723546-13723565 | None:intergenic | 40.0% | |
| TTCATTACATGCTTCTGCAG+AGG | - | chr5_3:13723665-13723684 | None:intergenic | 40.0% | |
| GCAACAAGTATAGCAACAAC+AGG | - | chr5_3:13723713-13723732 | None:intergenic | 40.0% | |
| GTTGCATTAGGAGAAAGCTT+CGG | + | chr5_3:13723728-13723747 | Msa0800340:CDS | 40.0% | |
| GACTTCTAATCTAGGTCACA+TGG | - | chr5_3:13724157-13724176 | None:intergenic | 40.0% | |
| CAAGTAGAGAGACAGTTTCA+AGG | - | chr5_3:13724191-13724210 | None:intergenic | 40.0% | |
| AACTGTCTCTCTACTTGTAG+AGG | + | chr5_3:13724194-13724213 | Msa0800340:intron | 40.0% | |
| ! | AGTTACTTTCTATGGTAGGG+GGG | + | chr5_3:13724325-13724344 | Msa0800340:intron | 40.0% |
| CTTCTCTCCATTCTTGTACA+AGG | - | chr5_3:13724396-13724415 | None:intergenic | 40.0% | |
| ! | CATGATAAGGCACTTCAAAC+AGG | - | chr5_3:13724490-13724509 | None:intergenic | 40.0% |
| ! | ATTTAACCGTTTTGCAGGTG+CGG | + | chr5_3:13724690-13724709 | Msa0800340:intron | 40.0% |
| AGACATTATGTAGAGGCTAC+TGG | + | chr5_3:13724809-13724828 | Msa0800340:three_prime_UTR | 40.0% | |
| CTACTGGCATTCTAACTTGA+AGG | + | chr5_3:13724825-13724844 | Msa0800340:three_prime_UTR | 40.0% | |
| !! | TTCCTAAGACGCATTTTGAC+GGG | + | chr5_3:13725012-13725031 | Msa0800340:three_prime_UTR | 40.0% |
| GATGACAGACATTGCTTTGC+GGG | - | chr5_3:13719497-13719516 | None:intergenic | 45.0% | |
| AAATCAAGCCACATCAGCTC+AGG | - | chr5_3:13720323-13720342 | None:intergenic | 45.0% | |
| ! | TGAAAGCTGCAAGTACTGCA+AGG | + | chr5_3:13720448-13720467 | Msa0800340:CDS | 45.0% |
| TCAAGATCTCTGAGCTGAAG+AGG | + | chr5_3:13720538-13720557 | Msa0800340:CDS | 45.0% | |
| AGCTTGAAGATGCACTCAGA+AGG | + | chr5_3:13720589-13720608 | Msa0800340:CDS | 45.0% | |
| TGATGCCTAAGCCTAACTCT+GGG | + | chr5_3:13721012-13721031 | Msa0800340:intron | 45.0% | |
| CAAATCTTCCACCCAGAGTT+AGG | - | chr5_3:13721026-13721045 | None:intergenic | 45.0% | |
| TTTACTAGATTGTCCGGGTC+GGG | + | chr5_3:13721101-13721120 | Msa0800340:intron | 45.0% | |
| ATTTAATAGCAGACCCGACC+CGG | - | chr5_3:13721117-13721136 | None:intergenic | 45.0% | |
| ! | GGCCAATATTTTCGTATGGC+AGG | - | chr5_3:13721146-13721165 | None:intergenic | 45.0% |
| ATTAGACGATGAGGACCAAC+AGG | + | chr5_3:13721987-13722006 | Msa0800340:CDS | 45.0% | |
| AAATAACTGTGTGCGCCTGT+TGG | - | chr5_3:13722005-13722024 | None:intergenic | 45.0% | |
| AAAACCTGATCCTGACAAGG+AGG | + | chr5_3:13722026-13722045 | Msa0800340:CDS | 45.0% | |
| AGTACAGTTGGGGTAAGAAC+AGG | - | chr5_3:13722079-13722098 | None:intergenic | 45.0% | |
| ! | CTTCAGGGAAAGTACAGTTG+GGG | - | chr5_3:13722089-13722108 | None:intergenic | 45.0% |
| ! | GCTTCAGGGAAAGTACAGTT+GGG | - | chr5_3:13722090-13722109 | None:intergenic | 45.0% |
| CTTGTGACCTTTGTAGCTCT+AGG | - | chr5_3:13722140-13722159 | None:intergenic | 45.0% | |
| GGTGCTTATATACATGGCCT+CGG | + | chr5_3:13722502-13722521 | Msa0800340:intron | 45.0% | |
| GGAAACAGAATATCTGTCCG+AGG | - | chr5_3:13722522-13722541 | None:intergenic | 45.0% | |
| ! | CGGTTGACATCATGTCCTTT+TGG | - | chr5_3:13722544-13722563 | None:intergenic | 45.0% |
| TTCCTGCTGATATGAACCTC+CGG | - | chr5_3:13722564-13722583 | None:intergenic | 45.0% | |
| GCACAAGCCACAAAGACATA+AGG | - | chr5_3:13722955-13722974 | None:intergenic | 45.0% | |
| TGGTATAGCATTTGGTCTGC+AGG | + | chr5_3:13723269-13723288 | Msa0800340:intron | 45.0% | |
| CACAAACACGAGGCATAAAG+AGG | - | chr5_3:13723817-13723836 | None:intergenic | 45.0% | |
| CTCTTTATGCCTCGTGTTTG+TGG | + | chr5_3:13723815-13723834 | Msa0800340:intron | 45.0% | |
| GTCTCTCTACTTGTAGAGGT+AGG | + | chr5_3:13724198-13724217 | Msa0800340:intron | 45.0% | |
| GTTGTGCCCTTGTACAAGAA+TGG | + | chr5_3:13724386-13724405 | Msa0800340:CDS | 45.0% | |
| AAGACATACCACTAACCCCA+CGG | - | chr5_3:13724426-13724445 | None:intergenic | 45.0% | |
| GATTCCATGTACTGGATAGG+TGG | - | chr5_3:13724736-13724755 | None:intergenic | 45.0% | |
| !! | AAAAATTATAAATGTAATTA+TGG | + | chr5_3:13720287-13720306 | Msa0800340:intron | 5.0% |
| ACTGATGTCCTGAGCTGATG+TGG | + | chr5_3:13720312-13720331 | Msa0800340:intron | 50.0% | |
| ATGGCGTCGTGGGAACATAT+GGG | + | chr5_3:13720363-13720382 | Msa0800340:CDS | 50.0% | |
| !! | TGAAGAGGTACCCGGAAACT+AGG | + | chr5_3:13720553-13720572 | Msa0800340:CDS | 50.0% |
| !! | GAAGAGGTACCCGGAAACTA+GGG | + | chr5_3:13720554-13720573 | Msa0800340:CDS | 50.0% |
| TTGTGGACAATGCTCGAGTC+AGG | + | chr5_3:13720748-13720767 | Msa0800340:CDS | 50.0% | |
| TGTGGACAATGCTCGAGTCA+GGG | + | chr5_3:13720749-13720768 | Msa0800340:CDS | 50.0% | |
| GTGATGCCTAAGCCTAACTC+TGG | + | chr5_3:13721011-13721030 | Msa0800340:intron | 50.0% | |
| TTCCACCCAGAGTTAGGCTT+AGG | - | chr5_3:13721020-13721039 | None:intergenic | 50.0% | |
| GGGTGGAAGATTTGAGAGAC+TGG | + | chr5_3:13721032-13721051 | Msa0800340:intron | 50.0% | |
| GCTCATTCAGGAGAGACTTG+AGG | + | chr5_3:13721936-13721955 | Msa0800340:intron | 50.0% | |
| GTATCCTCCTTGTCAGGATC+AGG | - | chr5_3:13722033-13722052 | None:intergenic | 50.0% | |
| ACTGCAGTATCCTCCTTGTC+AGG | - | chr5_3:13722039-13722058 | None:intergenic | 50.0% | |
| ! | CGCTTCAGGGAAAGTACAGT+TGG | - | chr5_3:13722091-13722110 | None:intergenic | 50.0% |
| AAGGACATGATGTCAACCGG+AGG | + | chr5_3:13722545-13722564 | Msa0800340:CDS | 50.0% | |
| AACCGGAGGTTCATATCAGC+AGG | + | chr5_3:13722559-13722578 | Msa0800340:CDS | 50.0% | |
| AGGTCACATGGCAGCAATCA+CGG | - | chr5_3:13724145-13724164 | None:intergenic | 50.0% | |
| TCTTCTCCGCACCTGCAAAA+CGG | - | chr5_3:13724699-13724718 | None:intergenic | 50.0% | |
| !! | GATAGGTGGAGGGCTTGTTT+TGG | - | chr5_3:13724722-13724741 | None:intergenic | 50.0% |
| CCATGTACTGGATAGGTGGA+GGG | - | chr5_3:13724732-13724751 | None:intergenic | 50.0% | |
| TCCATGTACTGGATAGGTGG+AGG | - | chr5_3:13724733-13724752 | None:intergenic | 50.0% | |
| CACCCGTCAAAATGCGTCTT+AGG | - | chr5_3:13725017-13725036 | None:intergenic | 50.0% | |
| TCTCAGAGAAGATGGCGTCG+TGG | + | chr5_3:13720352-13720371 | Msa0800340:exon | 55.0% | |
| CTCAGAGAAGATGGCGTCGT+GGG | + | chr5_3:13720353-13720372 | Msa0800340:exon | 55.0% | |
| GATGGCGTCGTGGGAACATA+TGG | + | chr5_3:13720362-13720381 | Msa0800340:exon | 55.0% | |
| TGGCGTCGTGGGAACATATG+GGG | + | chr5_3:13720364-13720383 | Msa0800340:CDS | 55.0% | |
| !! | CTCTGAGCTGAAGAGGTACC+CGG | + | chr5_3:13720545-13720564 | Msa0800340:CDS | 55.0% |
| TCCAGAGGCTCCCTAGTTTC+CGG | - | chr5_3:13720567-13720586 | None:intergenic | 55.0% | |
| GCATCTTCAAGCTGCTCCAG+AGG | - | chr5_3:13720582-13720601 | None:intergenic | 55.0% | |
| TGCCTAAGCCTAACTCTGGG+TGG | + | chr5_3:13721015-13721034 | Msa0800340:intron | 55.0% | |
| !! | GCAATCACGGTGTTGTGCCA+AGG | - | chr5_3:13724132-13724151 | None:intergenic | 55.0% |
| CCCTCCACCTATCCAGTACA+TGG | + | chr5_3:13724729-13724748 | Msa0800340:CDS | 55.0% | |
| GGCGTCGTGGGAACATATGG+GGG | + | chr5_3:13720365-13720384 | Msa0800340:CDS | 60.0% | |
| CCAGAGGCTCCCTAGTTTCC+GGG | - | chr5_3:13720566-13720585 | None:intergenic | 60.0% | |
| ! | TGTGGCTTGTGCGATGTGCG+TGG | + | chr5_3:13722963-13722982 | Msa0800340:intron | 60.0% |
| CCCGGAAACTAGGGAGCCTC+TGG | + | chr5_3:13720563-13720582 | Msa0800340:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 13719416 | 13725043 | 13719416 | ID=Msa0800340;Name=Msa0800340 |
| chr5_3 | mRNA | 13719416 | 13725043 | 13719416 | ID=Msa0800340-mRNA-1;Parent=Msa0800340;Name=Msa0800340-mRNA-1;_AED=0.16;_eAED=0.16;_QI=287|1|1|1|0.75|0.66|9|284|416 |
| chr5_3 | exon | 13719416 | 13719563 | 13719416 | ID=Msa0800340-mRNA-1:exon:5723;Parent=Msa0800340-mRNA-1 |
| chr5_3 | exon | 13719908 | 13720029 | 13719908 | ID=Msa0800340-mRNA-1:exon:5724;Parent=Msa0800340-mRNA-1 |
| chr5_3 | exon | 13720346 | 13720770 | 13720346 | ID=Msa0800340-mRNA-1:exon:5725;Parent=Msa0800340-mRNA-1 |
| chr5_3 | exon | 13721946 | 13722361 | 13721946 | ID=Msa0800340-mRNA-1:exon:5726;Parent=Msa0800340-mRNA-1 |
| chr5_3 | exon | 13722529 | 13722629 | 13722529 | ID=Msa0800340-mRNA-1:exon:5727;Parent=Msa0800340-mRNA-1 |
| chr5_3 | exon | 13723291 | 13723362 | 13723291 | ID=Msa0800340-mRNA-1:exon:5728;Parent=Msa0800340-mRNA-1 |
| chr5_3 | exon | 13723662 | 13723768 | 13723662 | ID=Msa0800340-mRNA-1:exon:5729;Parent=Msa0800340-mRNA-1 |
| chr5_3 | exon | 13724343 | 13724436 | 13724343 | ID=Msa0800340-mRNA-1:exon:5730;Parent=Msa0800340-mRNA-1 |
| chr5_3 | exon | 13724707 | 13725043 | 13724707 | ID=Msa0800340-mRNA-1:exon:5731;Parent=Msa0800340-mRNA-1 |
| chr5_3 | five_prime_UTR | 13719416 | 13719563 | 13719416 | ID=Msa0800340-mRNA-1:five_prime_utr;Parent=Msa0800340-mRNA-1 |
| chr5_3 | five_prime_UTR | 13719908 | 13720029 | 13719908 | ID=Msa0800340-mRNA-1:five_prime_utr;Parent=Msa0800340-mRNA-1 |
| chr5_3 | five_prime_UTR | 13720346 | 13720362 | 13720346 | ID=Msa0800340-mRNA-1:five_prime_utr;Parent=Msa0800340-mRNA-1 |
| chr5_3 | CDS | 13720363 | 13720770 | 13720363 | ID=Msa0800340-mRNA-1:cds;Parent=Msa0800340-mRNA-1 |
| chr5_3 | CDS | 13721946 | 13722361 | 13721946 | ID=Msa0800340-mRNA-1:cds;Parent=Msa0800340-mRNA-1 |
| chr5_3 | CDS | 13722529 | 13722629 | 13722529 | ID=Msa0800340-mRNA-1:cds;Parent=Msa0800340-mRNA-1 |
| chr5_3 | CDS | 13723291 | 13723362 | 13723291 | ID=Msa0800340-mRNA-1:cds;Parent=Msa0800340-mRNA-1 |
| chr5_3 | CDS | 13723662 | 13723768 | 13723662 | ID=Msa0800340-mRNA-1:cds;Parent=Msa0800340-mRNA-1 |
| chr5_3 | CDS | 13724343 | 13724436 | 13724343 | ID=Msa0800340-mRNA-1:cds;Parent=Msa0800340-mRNA-1 |
| chr5_3 | CDS | 13724707 | 13724759 | 13724707 | ID=Msa0800340-mRNA-1:cds;Parent=Msa0800340-mRNA-1 |
| chr5_3 | three_prime_UTR | 13724760 | 13725043 | 13724760 | ID=Msa0800340-mRNA-1:three_prime_utr;Parent=Msa0800340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
