Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0000990 | sp|Q8L7E9|MCAC1_ARATH | 68.421 | 418 | 126 | 3 | 3 | 415 | 4 | 420 | 0.0 | 581 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000990 | Msa0690170 | 0.803569 | 3.274582e-49 | -8.615850e-47 |
| Msa0000990 | Msa0800340 | 0.998754 | 2.164960e-275 | -8.615850e-47 |
| Msa0000990 | Msa0838340 | 0.801541 | 8.576497e-49 | -8.615850e-47 |
| Msa0000990 | Msa1010730 | 0.813877 | 2.049148e-51 | -8.615850e-47 |
| Msa0000990 | Msa1096260 | 0.800118 | 1.674276e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0000990 | MtrunA17_Chr5g0405841 | 97.596 | 416 | 10 | 0 | 1 | 416 | 1 | 416 | 0.0 | 848 |
| Msa0000990 | MtrunA17_Chr8g0371431 | 77.488 | 422 | 88 | 3 | 2 | 416 | 3 | 424 | 0.0 | 672 |
| Msa0000990 | MtrunA17_Chr8g0391431 | 33.645 | 107 | 70 | 1 | 294 | 399 | 51 | 157 | 3.18e-11 | 62.4 |
| Msa0000990 | MtrunA17_Chr2g0331531 | 27.841 | 176 | 98 | 5 | 259 | 414 | 3 | 169 | 4.58e-11 | 61.2 |
| Msa0000990 | MtrunA17_Chr5g0402421 | 31.061 | 132 | 87 | 2 | 272 | 399 | 29 | 160 | 5.09e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0000990 | AT4G35920.1 | 68.421 | 418 | 126 | 3 | 3 | 415 | 4 | 420 | 0.0 | 581 |
| Msa0000990 | AT4G35920.5 | 68.421 | 418 | 126 | 3 | 3 | 415 | 4 | 420 | 0.0 | 581 |
| Msa0000990 | AT4G35920.4 | 68.421 | 418 | 126 | 3 | 3 | 415 | 4 | 420 | 0.0 | 581 |
| Msa0000990 | AT4G35920.2 | 68.421 | 418 | 126 | 3 | 3 | 415 | 4 | 420 | 0.0 | 581 |
| Msa0000990 | AT4G35920.3 | 68.421 | 418 | 126 | 3 | 3 | 415 | 4 | 420 | 0.0 | 581 |
| Msa0000990 | AT2G17780.7 | 61.722 | 418 | 149 | 7 | 3 | 415 | 4 | 415 | 6.81e-178 | 503 |
| Msa0000990 | AT2G17780.6 | 61.722 | 418 | 149 | 7 | 3 | 415 | 4 | 415 | 6.81e-178 | 503 |
| Msa0000990 | AT2G17780.10 | 61.722 | 418 | 149 | 7 | 3 | 415 | 4 | 415 | 6.81e-178 | 503 |
| Msa0000990 | AT2G17780.5 | 61.722 | 418 | 149 | 7 | 3 | 415 | 4 | 415 | 6.81e-178 | 503 |
| Msa0000990 | AT2G17780.1 | 61.722 | 418 | 149 | 7 | 3 | 415 | 4 | 415 | 6.81e-178 | 503 |
| Msa0000990 | AT2G17780.2 | 61.538 | 416 | 151 | 6 | 3 | 415 | 4 | 413 | 4.64e-177 | 500 |
| Msa0000990 | AT2G17780.3 | 62.406 | 399 | 142 | 5 | 3 | 399 | 4 | 396 | 9.96e-174 | 492 |
| Msa0000990 | AT2G17780.9 | 62.406 | 399 | 142 | 5 | 3 | 399 | 4 | 396 | 9.96e-174 | 492 |
| Msa0000990 | AT2G17780.8 | 60.870 | 368 | 136 | 5 | 3 | 368 | 4 | 365 | 2.60e-153 | 439 |
| Msa0000990 | AT2G17780.4 | 59.223 | 309 | 118 | 5 | 3 | 309 | 4 | 306 | 1.21e-117 | 345 |
| Msa0000990 | AT5G35525.1 | 34.545 | 110 | 71 | 1 | 290 | 398 | 11 | 120 | 2.27e-11 | 62.0 |
| Msa0000990 | AT1G14870.1 | 33.028 | 109 | 72 | 1 | 290 | 397 | 11 | 119 | 2.78e-11 | 62.0 |
| Msa0000990 | AT3G18470.1 | 27.612 | 134 | 82 | 3 | 292 | 414 | 2 | 131 | 3.54e-11 | 61.2 |
Find 108 sgRNAs with CRISPR-Local
Find 289 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAATGATAATGCTATTTC+TGG | 0.108331 | 1_1:+2388140 | Msa0000990:five_prime_UTR |
| ACAATGTCATTTAGTTGTTT+AGG | 0.202753 | 1_1:+2392991 | Msa0000990:three_prime_UTR |
| ACAAAGGTCACAAGCAAATT+TGG | 0.213705 | 1_1:+2390367 | Msa0000990:CDS |
| AAGGCAAGAACCATGTATTT+TGG | 0.228382 | 1_1:+2393065 | Msa0000990:three_prime_UTR |
| CAATGTCATTTAGTTGTTTA+GGG | 0.257819 | 1_1:+2392992 | Msa0000990:three_prime_UTR |
| CGGTTGACATCATGTCCTTT+TGG | 0.261672 | 1_1:-2390762 | None:intergenic |
| TCCAGAGGCTCCCTAGTTTC+CGG | 0.297787 | 1_1:-2388785 | None:intergenic |
| GATGACAGACATTGCTTTGC+GGG | 0.316966 | 1_1:-2387715 | None:intergenic |
| GGAATATTGTTTATCAGTTC+AGG | 0.327510 | 1_1:+2388894 | Msa0000990:CDS |
| GATAGGTGGAGGGCTTGTTT+TGG | 0.331710 | 1_1:-2392940 | None:intergenic |
| GATGGCGTCGTGGGAACATA+TGG | 0.340322 | 1_1:+2388583 | Msa0000990:exon |
| CCAGAGGCTCCCTAGTTTCC+GGG | 0.365728 | 1_1:-2388784 | None:intergenic |
| TTGTGGACAATGCTCGAGTC+AGG | 0.368877 | 1_1:+2388969 | Msa0000990:CDS |
| GTTGCTATACTTGTTGCATT+AGG | 0.369664 | 1_1:+2391937 | Msa0000990:CDS |
| GCAATGCATTTGAAGTTGAT+TGG | 0.388921 | 1_1:+2388719 | Msa0000990:CDS |
| CACCCGTCAAAATGCGTCTT+AGG | 0.391384 | 1_1:-2393235 | None:intergenic |
| AGTCATTCAACGTTTATTAG+AGG | 0.401692 | 1_1:+2390406 | Msa0000990:CDS |
| GTATCCTCCTTGTCAGGATC+AGG | 0.403290 | 1_1:-2390251 | None:intergenic |
| CAATGCATTTGAAGTTGATT+GGG | 0.410219 | 1_1:+2388720 | Msa0000990:CDS |
| AGTAGCAGAGTATTCTCTTC+CGG | 0.418308 | 1_1:+2390436 | Msa0000990:CDS |
| TCGAAGTTACCTGTATTTGT+TGG | 0.422893 | 1_1:+2388862 | Msa0000990:CDS |
| CTTGTGACCTTTGTAGCTCT+AGG | 0.425566 | 1_1:-2390358 | None:intergenic |
| TTACTTAAGATTCCATGTAC+TGG | 0.427640 | 1_1:-2392962 | None:intergenic |
| CTTCTCTCCATTCTTGTACA+AGG | 0.437918 | 1_1:-2392614 | None:intergenic |
| GTGGAGATCCGTGGGGTTAG+TGG | 0.439025 | 1_1:+2392636 | Msa0000990:CDS |
| TGAAAGACCATTGTCATCAT+TGG | 0.439272 | 1_1:-2390513 | None:intergenic |
| TGAAGAGGTACCCGGAAACT+AGG | 0.442827 | 1_1:+2388774 | Msa0000990:CDS |
| ATCCCATTGCCAACAAATAC+AGG | 0.448284 | 1_1:-2388871 | None:intergenic |
| CCCGGAAACTAGGGAGCCTC+TGG | 0.448876 | 1_1:+2388784 | Msa0000990:CDS |
| AGAAGCATGTAATGAATTGA+TGG | 0.451145 | 1_1:+2391890 | Msa0000990:CDS |
| CGCTTCAGGGAAAGTACAGT+TGG | 0.453374 | 1_1:-2390309 | None:intergenic |
| TGTTCCTCTTATCACTCTTG+TGG | 0.458143 | 1_1:+2388952 | Msa0000990:CDS |
| TGGATACTCTTTCGCAATCA+AGG | 0.461231 | 1_1:+2390561 | Msa0000990:CDS |
| CAGATATTCTGTTTCCCAAA+AGG | 0.463290 | 1_1:+2390747 | Msa0000990:intron |
| GTTCATATCAGCAGGAAGAT+TGG | 0.466681 | 1_1:+2390788 | Msa0000990:CDS |
| GAACATACAAAGAGAAGGTT+CGG | 0.466900 | 1_1:-2390836 | None:intergenic |
| GAAGTTGATTGGGAACTTGT+TGG | 0.469906 | 1_1:+2388730 | Msa0000990:CDS |
| GCAAATATAGCGCAATTGAC+TGG | 0.470701 | 1_1:+2388614 | Msa0000990:CDS |
| CTACTGGCATTCTAACTTGA+AGG | 0.475757 | 1_1:+2393046 | Msa0000990:three_prime_UTR |
| ATGGCGTCGTGGGAACATAT+GGG | 0.476474 | 1_1:+2388584 | Msa0000990:CDS |
| AGGTTGATTCTCAGAGAAGA+TGG | 0.478170 | 1_1:+2388565 | Msa0000990:intron |
| ATTAGACGATGAGGACCAAC+AGG | 0.479377 | 1_1:+2390208 | Msa0000990:CDS |
| TTACCTGTATTTGTTGGCAA+TGG | 0.483761 | 1_1:+2388868 | Msa0000990:CDS |
| CAAAAGGACATGATGTCAAC+CGG | 0.483797 | 1_1:+2390763 | Msa0000990:CDS |
| CCCTCCACCTATCCAGTACA+TGG | 0.486096 | 1_1:+2392950 | Msa0000990:CDS |
| TACTTGCAGGAAATTGAAGA+AGG | 0.492263 | 1_1:-2387765 | None:intergenic |
| GCAACAAGTATAGCAACAAC+AGG | 0.494096 | 1_1:-2391931 | None:intergenic |
| TACCTGTATTTGTTGGCAAT+GGG | 0.494787 | 1_1:+2388869 | Msa0000990:CDS |
| AGTACAGTTGGGGTAAGAAC+AGG | 0.495891 | 1_1:-2390297 | None:intergenic |
| ACTGCAGTATCCTCCTTGTC+AGG | 0.505076 | 1_1:-2390257 | None:intergenic |
| GCTTCAGGGAAAGTACAGTT+GGG | 0.506385 | 1_1:-2390308 | None:intergenic |
| AACCGGAGGTTCATATCAGC+AGG | 0.512000 | 1_1:+2390780 | Msa0000990:CDS |
| ATTGTTATTTGCTTAATCAA+AGG | 0.512681 | 1_1:+2388229 | Msa0000990:five_prime_UTR |
| ATGTTGTGTAGCTTCTAGAT+TGG | 0.522186 | 1_1:+2393134 | Msa0000990:three_prime_UTR |
| TTCTCTCCATTCTTGTACAA+GGG | 0.527375 | 1_1:-2392613 | None:intergenic |
| CTCAGAGAAGATGGCGTCGT+GGG | 0.529686 | 1_1:+2388574 | Msa0000990:exon |
| TTTAGTTGTTTAGGGATCCA+AGG | 0.531045 | 1_1:+2393000 | Msa0000990:three_prime_UTR |
| TTCCTGCTGATATGAACCTC+CGG | 0.532068 | 1_1:-2390782 | None:intergenic |
| ACTCAGAAGGTCTTATATGT+TGG | 0.532293 | 1_1:+2388823 | Msa0000990:CDS |
| AGACATTATGTAGAGGCTAC+TGG | 0.533396 | 1_1:+2393030 | Msa0000990:three_prime_UTR |
| ATACATACATAATTTAAAAG+AGG | 0.534382 | 1_1:-2393104 | None:intergenic |
| GTAGATGCTGTGAAGTTGAT+TGG | 0.535227 | 1_1:+2388638 | Msa0000990:CDS |
| CTCTGAGCTGAAGAGGTACC+CGG | 0.535961 | 1_1:+2388766 | Msa0000990:CDS |
| GGAGAGAAGTGGAGATCCGT+GGG | 0.536935 | 1_1:+2392628 | Msa0000990:CDS |
| TGATGACAGACATTGCTTTG+CGG | 0.537015 | 1_1:-2387716 | None:intergenic |
| TCCATGTACTGGATAGGTGG+AGG | 0.545948 | 1_1:-2392951 | None:intergenic |
| TGGCGTCGTGGGAACATATG+GGG | 0.551313 | 1_1:+2388585 | Msa0000990:CDS |
| GGTTATTGAACATGATCAGC+GGG | 0.551617 | 1_1:+2390178 | Msa0000990:CDS |
| AAGACATTCTTCTATCCTTG+TGG | 0.553618 | 1_1:+2391517 | Msa0000990:CDS |
| TGTGGACAATGCTCGAGTCA+GGG | 0.553689 | 1_1:+2388970 | Msa0000990:CDS |
| TTGTCCACAAGAGTGATAAG+AGG | 0.560131 | 1_1:-2388956 | None:intergenic |
| GAAGAGGTACCCGGAAACTA+GGG | 0.561185 | 1_1:+2388775 | Msa0000990:CDS |
| TAAGATTCCATGTACTGGAT+AGG | 0.565338 | 1_1:-2392957 | None:intergenic |
| GTTGCATTAGGAGAAAGCTT+CGG | 0.573745 | 1_1:+2391949 | Msa0000990:CDS |
| GCATCTTCAAGCTGCTCCAG+AGG | 0.575225 | 1_1:-2388800 | None:intergenic |
| GTTGTGCCCTTGTACAAGAA+TGG | 0.575953 | 1_1:+2392607 | Msa0000990:CDS |
| GATTCCATGTACTGGATAGG+TGG | 0.585710 | 1_1:-2392954 | None:intergenic |
| AGCTTGAAGATGCACTCAGA+AGG | 0.586177 | 1_1:+2388810 | Msa0000990:CDS |
| AGCTTAACCTAGAGCTACAA+AGG | 0.587180 | 1_1:+2390351 | Msa0000990:CDS |
| TTCATTACATGCTTCTGCAG+AGG | 0.589574 | 1_1:-2391883 | None:intergenic |
| GCTCATTCAGGAGAGACTTG+AGG | 0.591000 | 1_1:+2390157 | Msa0000990:intron |
| TCAAGATCTCTGAGCTGAAG+AGG | 0.593903 | 1_1:+2388759 | Msa0000990:CDS |
| AAATAACTGTGTGCGCCTGT+TGG | 0.596782 | 1_1:-2390223 | None:intergenic |
| TGGAGAGAAGTGGAGATCCG+TGG | 0.601083 | 1_1:+2392627 | Msa0000990:CDS |
| TTTAAAACCTGATCCTGACA+AGG | 0.603010 | 1_1:+2390244 | Msa0000990:CDS |
| GGAGAGAACATACAAAGAGA+AGG | 0.604050 | 1_1:-2390841 | None:intergenic |
| ACTTGCAGGAAATTGAAGAA+GGG | 0.604207 | 1_1:-2387764 | None:intergenic |
| TGTATTTGTTGGCAATGGGA+TGG | 0.606590 | 1_1:+2388873 | Msa0000990:CDS |
| TGTACAAGAATGGAGAGAAG+TGG | 0.606865 | 1_1:+2392617 | Msa0000990:CDS |
| AAGAATGGAAGATTTGACGC+TGG | 0.620697 | 1_1:-2388190 | None:intergenic |
| CCATGTACTGGATAGGTGGA+GGG | 0.623104 | 1_1:-2392950 | None:intergenic |
| ACAGTGAGAACCAAAATACA+TGG | 0.626903 | 1_1:-2393075 | None:intergenic |
| TATTGTTTATCAGTTCAGGA+AGG | 0.633802 | 1_1:+2388898 | Msa0000990:CDS |
| ATCTTTGAAAATGTTCCACA+AGG | 0.635888 | 1_1:-2391532 | None:intergenic |
| TCCTAAAAGACATTATGTAG+AGG | 0.638908 | 1_1:+2393023 | Msa0000990:three_prime_UTR |
| GGCGTCGTGGGAACATATGG+GGG | 0.639992 | 1_1:+2388586 | Msa0000990:CDS |
| TCTCAGAGAAGATGGCGTCG+TGG | 0.648065 | 1_1:+2388573 | Msa0000990:exon |
| AAACAAAACAAAGAGTAGAG+TGG | 0.658970 | 1_1:+2387663 | Msa0000990:five_prime_UTR |
| AAAACCTGATCCTGACAAGG+AGG | 0.668934 | 1_1:+2390247 | Msa0000990:CDS |
| TCTGATGCCAATGATGACAA+TGG | 0.675518 | 1_1:+2390506 | Msa0000990:CDS |
| GGAATACACATTAGACGATG+AGG | 0.676469 | 1_1:+2390199 | Msa0000990:CDS |
| AGGTTATTGAACATGATCAG+CGG | 0.676879 | 1_1:+2390177 | Msa0000990:CDS |
| AAGACATACCACTAACCCCA+CGG | 0.680905 | 1_1:-2392644 | None:intergenic |
| TGATAAGAGGAACAAGACGT+AGG | 0.682558 | 1_1:-2388943 | None:intergenic |
| CTTCAGGGAAAGTACAGTTG+GGG | 0.689261 | 1_1:-2390307 | None:intergenic |
| TGAAAGCTGCAAGTACTGCA+AGG | 0.698868 | 1_1:+2388669 | Msa0000990:CDS |
| AAGGACATGATGTCAACCGG+AGG | 0.716306 | 1_1:+2390766 | Msa0000990:CDS |
| GAGAGAAGTGGAGATCCGTG+GGG | 0.788408 | 1_1:+2392629 | Msa0000990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTTTATATTTTATTT+TGG | + | chr1_1:2388056-2388075 | Msa0000990:intron | 0.0% |
| !! | AAAGAAAATAATAAAAAAAG+AGG | - | chr1_1:2387918-2387937 | None:intergenic | 10.0% |
| !!! | TATATTTTATTTTGGTAATT+AGG | + | chr1_1:2388064-2388083 | Msa0000990:intron | 10.0% |
| !! | AATAAAATTACGATAAAATA+AGG | + | chr1_1:2392452-2392471 | Msa0000990:intron | 10.0% |
| !!! | TTATTAATATTTTGTTTTCA+TGG | + | chr1_1:2393164-2393183 | Msa0000990:three_prime_UTR | 10.0% |
| !!! | TTTGATGCATTTTTTTTTTT+GGG | + | chr1_1:2388440-2388459 | Msa0000990:intron | 15.0% |
| !! | AGAAAATGAAAATTAATAAG+TGG | - | chr1_1:2389208-2389227 | None:intergenic | 15.0% |
| !!! | CTTATTAATTTTCATTTTCT+TGG | + | chr1_1:2389208-2389227 | Msa0000990:intron | 15.0% |
| !!! | ATTAAGTAGTTTAGTTTTTT+TGG | + | chr1_1:2389474-2389493 | Msa0000990:intron | 15.0% |
| !!! | ATAACTTATAAAGCTTTTTA+TGG | + | chr1_1:2392092-2392111 | Msa0000990:intron | 15.0% |
| !! | TATGAAATATTTAAAAAGAC+TGG | - | chr1_1:2392518-2392537 | None:intergenic | 15.0% |
| !! | ATACATACATAATTTAAAAG+AGG | - | chr1_1:2393107-2393126 | None:intergenic | 15.0% |
| !!! | GTGTTCAATTTTCTTTTTTT+AGG | + | chr1_1:2388031-2388050 | Msa0000990:intron | 20.0% |
| !!! | ATTGTTATTTGCTTAATCAA+AGG | + | chr1_1:2388229-2388248 | Msa0000990:five_prime_UTR | 20.0% |
| !!! | TTTGATGCATGTTTTTTTTT+AGG | + | chr1_1:2388296-2388315 | Msa0000990:intron | 20.0% |
| !!! | ATTTTTGTTATTGTTGTTGA+TGG | + | chr1_1:2388326-2388345 | Msa0000990:intron | 20.0% |
| !!! | CTTTGATGCATTTTTTTTTT+TGG | + | chr1_1:2388439-2388458 | Msa0000990:intron | 20.0% |
| !!! | TTTGTGATTTTCTACTAATT+TGG | + | chr1_1:2389070-2389089 | Msa0000990:intron | 20.0% |
| !!! | TTGTGATTTTCTACTAATTT+GGG | + | chr1_1:2389071-2389090 | Msa0000990:intron | 20.0% |
| !! | AACTACTTAATATAGTTATC+TGG | - | chr1_1:2389465-2389484 | None:intergenic | 20.0% |
| !! | TTTGTTTAAATAGCATTTGA+CGG | + | chr1_1:2389616-2389635 | Msa0000990:intron | 20.0% |
| !!! | TATTATTTTCTGTCATGATA+AGG | + | chr1_1:2389757-2389776 | Msa0000990:intron | 20.0% |
| !! | ATAGTACTGCTTATTAAAAA+GGG | - | chr1_1:2389896-2389915 | None:intergenic | 20.0% |
| !! | TATAGTACTGCTTATTAAAA+AGG | - | chr1_1:2389897-2389916 | None:intergenic | 20.0% |
| !!! | ATTAATCTTCCTTACTATTT+TGG | + | chr1_1:2390675-2390694 | Msa0000990:intron | 20.0% |
| !!! | AAACTTTTAAAATATCAAGC+AGG | - | chr1_1:2390865-2390884 | None:intergenic | 20.0% |
| !!! | TGCTTGATATTTTAAAAGTT+TGG | + | chr1_1:2390864-2390883 | Msa0000990:intron | 20.0% |
| !! | ATAATTCATGAGAGTAATTA+GGG | - | chr1_1:2391018-2391037 | None:intergenic | 20.0% |
| !!! | ATACGATGATTTTTTTAACT+AGG | + | chr1_1:2391230-2391249 | Msa0000990:intron | 20.0% |
| !! | GAATATTGAATTAGATTAGA+TGG | + | chr1_1:2391272-2391291 | Msa0000990:intron | 20.0% |
| !!! | CTGTTTTACTAAAAACATAA+GGG | - | chr1_1:2391364-2391383 | None:intergenic | 20.0% |
| !!! | TCTGTTTTACTAAAAACATA+AGG | - | chr1_1:2391365-2391384 | None:intergenic | 20.0% |
| !! | TTTAGTAAAACAGAAAGATA+AGG | + | chr1_1:2391371-2391390 | Msa0000990:intron | 20.0% |
| !! | TAAGAAAATCAACTAAAGAT+AGG | + | chr1_1:2391432-2391451 | Msa0000990:intron | 20.0% |
| !!! | TACTTTTCATTCTTAGTAAT+TGG | + | chr1_1:2391470-2391489 | Msa0000990:intron | 20.0% |
| !! | TGATAAGAAATAACCATTTA+GGG | - | chr1_1:2392863-2392882 | None:intergenic | 20.0% |
| !! | TTGATAAGAAATAACCATTT+AGG | - | chr1_1:2392864-2392883 | None:intergenic | 20.0% |
| !!! | TTGAATGATAATGCTATTTC+TGG | + | chr1_1:2388140-2388159 | Msa0000990:five_prime_UTR | 25.0% |
| ! | TGCAGAAAAAATCTTAAGAA+TGG | - | chr1_1:2388208-2388227 | None:intergenic | 25.0% |
| !! | TGTGATTTTCTACTAATTTG+GGG | + | chr1_1:2389072-2389091 | Msa0000990:intron | 25.0% |
| !! | GGAAGCATGTAATATATATT+AGG | + | chr1_1:2389778-2389797 | Msa0000990:intron | 25.0% |
| ! | AATTTCAATCACATTGTTTC+TGG | + | chr1_1:2390004-2390023 | Msa0000990:intron | 25.0% |
| !!! | TTTCTTTTTTAATCGCTTCA+GGG | - | chr1_1:2390325-2390344 | None:intergenic | 25.0% |
| !!! | TTTTCTTTTTTAATCGCTTC+AGG | - | chr1_1:2390326-2390345 | None:intergenic | 25.0% |
| ! | TGAAGCGATTAAAAAAGAAA+AGG | + | chr1_1:2390325-2390344 | Msa0000990:CDS | 25.0% |
| !!! | TCTTTCTTATGACTTTTTTC+AGG | - | chr1_1:2390473-2390492 | None:intergenic | 25.0% |
| ! | AATTATGATTTCTGCTTAAC+TGG | - | chr1_1:2390641-2390660 | None:intergenic | 25.0% |
| ! | AGTTAATGACCAAAATAGTA+AGG | - | chr1_1:2390687-2390706 | None:intergenic | 25.0% |
| ! | GATATATTACCTGTACATTA+TGG | + | chr1_1:2390917-2390936 | Msa0000990:intron | 25.0% |
| ! | TAATTCATGAGAGTAATTAG+GGG | - | chr1_1:2391017-2391036 | None:intergenic | 25.0% |
| ! | CATAATTCATGAGAGTAATT+AGG | - | chr1_1:2391019-2391038 | None:intergenic | 25.0% |
| ! | GTAACACTTATATATGTCTT+GGG | - | chr1_1:2391050-2391069 | None:intergenic | 25.0% |
| ! | TGTAACACTTATATATGTCT+TGG | - | chr1_1:2391051-2391070 | None:intergenic | 25.0% |
| ! | AAGACATATATAAGTGTTAC+AGG | + | chr1_1:2391050-2391069 | Msa0000990:intron | 25.0% |
| ! | TAATTGAGTGAGTCAAAATT+TGG | - | chr1_1:2391151-2391170 | None:intergenic | 25.0% |
| !! | AATGAAAAGTATAGAGAGAT+TGG | - | chr1_1:2391461-2391480 | None:intergenic | 25.0% |
| ! | TTAGTAATTGGTATAGCATT+TGG | + | chr1_1:2391482-2391501 | Msa0000990:intron | 25.0% |
| ! | AAGATAGCTAACTTACAAAT+GGG | - | chr1_1:2391580-2391599 | None:intergenic | 25.0% |
| ! | TAGAAATTAGTGAATCAAGT+TGG | + | chr1_1:2391660-2391679 | Msa0000990:intron | 25.0% |
| ! | GAAAATCATGTCTTCATTAT+AGG | - | chr1_1:2391707-2391726 | None:intergenic | 25.0% |
| ! | AACAAGTCATATTTATGCAA+AGG | - | chr1_1:2392011-2392030 | None:intergenic | 25.0% |
| !!! | TTTTATGGTACCATTTTTTG+TGG | + | chr1_1:2392107-2392126 | Msa0000990:intron | 25.0% |
| ! | CATGTATATGAAAATAGTTG+TGG | - | chr1_1:2392183-2392202 | None:intergenic | 25.0% |
| !! | TCGTAATTTTATTGTGTTGT+AGG | - | chr1_1:2392445-2392464 | None:intergenic | 25.0% |
| !! | TTAATCGTAGTTACTTTCTA+TGG | + | chr1_1:2392538-2392557 | Msa0000990:intron | 25.0% |
| ! | ATAGTAAGATGAAGAATACA+TGG | - | chr1_1:2392794-2392813 | None:intergenic | 25.0% |
| !! | ACAATGTCATTTAGTTGTTT+AGG | + | chr1_1:2392991-2393010 | Msa0000990:three_prime_UTR | 25.0% |
| !! | CAATGTCATTTAGTTGTTTA+GGG | + | chr1_1:2392992-2393011 | Msa0000990:three_prime_UTR | 25.0% |
| AAACAAAACAAAGAGTAGAG+TGG | + | chr1_1:2387663-2387682 | Msa0000990:five_prime_UTR | 30.0% | |
| TAGTGAAAGTTATTACTTGC+AGG | - | chr1_1:2387781-2387800 | None:intergenic | 30.0% | |
| ! | CAATTTCTCTAGTTTAGCTA+TGG | + | chr1_1:2387954-2387973 | Msa0000990:intron | 30.0% |
| ! | ATGGATTTCAATTTTCATGC+TGG | + | chr1_1:2387973-2387992 | Msa0000990:intron | 30.0% |
| !! | AATGCAATTTTGACGCTATA+AGG | + | chr1_1:2388380-2388399 | Msa0000990:intron | 30.0% |
| ! | CAATGCATTTGAAGTTGATT+GGG | + | chr1_1:2388720-2388739 | Msa0000990:CDS | 30.0% |
| GGAATATTGTTTATCAGTTC+AGG | + | chr1_1:2388894-2388913 | Msa0000990:CDS | 30.0% | |
| TATTGTTTATCAGTTCAGGA+AGG | + | chr1_1:2388898-2388917 | Msa0000990:CDS | 30.0% | |
| AAGCATATTGAGTGAGTAAT+TGG | + | chr1_1:2389145-2389164 | Msa0000990:intron | 30.0% | |
| CACTTATTTACTAGATTGTC+CGG | + | chr1_1:2389316-2389335 | Msa0000990:intron | 30.0% | |
| ACTTATTTACTAGATTGTCC+GGG | + | chr1_1:2389317-2389336 | Msa0000990:intron | 30.0% | |
| ATTCCTGGTTTATGAAAATC+TGG | + | chr1_1:2389400-2389419 | Msa0000990:intron | 30.0% | |
| TTCCTGGTTTATGAAAATCT+GGG | + | chr1_1:2389401-2389420 | Msa0000990:intron | 30.0% | |
| !!! | ATGTTTTAGTTGCATCTTTG+TGG | + | chr1_1:2389835-2389854 | Msa0000990:intron | 30.0% |
| AGCAGTACTATATAAAGAAG+TGG | + | chr1_1:2389905-2389924 | Msa0000990:intron | 30.0% | |
| TTGCTCAATTGATTACAACT+TGG | - | chr1_1:2389935-2389954 | None:intergenic | 30.0% | |
| CATATTTCCCTACATTTGTA+AGG | + | chr1_1:2390033-2390052 | Msa0000990:intron | 30.0% | |
| TCTAAGTCCTTACAAATGTA+GGG | - | chr1_1:2390043-2390062 | None:intergenic | 30.0% | |
| AGTTAGTGACAATATAACAC+AGG | - | chr1_1:2390066-2390085 | None:intergenic | 30.0% | |
| ACCAACCAAATTTACACATT+CGG | - | chr1_1:2390106-2390125 | None:intergenic | 30.0% | |
| AGTCATTCAACGTTTATTAG+AGG | + | chr1_1:2390406-2390425 | Msa0000990:CDS | 30.0% | |
| TGAAAAATACCATGCAAAAG+TGG | + | chr1_1:2390541-2390560 | Msa0000990:CDS | 30.0% | |
| ! | TAACTTATATCGACTGTGTT+TGG | + | chr1_1:2390702-2390721 | Msa0000990:intron | 30.0% |
| TGACATAATGAAAATGCACA+AGG | - | chr1_1:2390977-2390996 | None:intergenic | 30.0% | |
| TTTACCTTACAAGTTAACTC+AGG | + | chr1_1:2391295-2391314 | Msa0000990:intron | 30.0% | |
| !!! | AGGGTTTTTTAATGTTCAGT+GGG | - | chr1_1:2391345-2391364 | None:intergenic | 30.0% |
| !!! | AAGGGTTTTTTAATGTTCAG+TGG | - | chr1_1:2391346-2391365 | None:intergenic | 30.0% |
| ! | CATGTTTTTCTTCTGTTCAT+AGG | - | chr1_1:2391399-2391418 | None:intergenic | 30.0% |
| CTATGAACAGAAGAAAAACA+TGG | + | chr1_1:2391397-2391416 | Msa0000990:intron | 30.0% | |
| ! | ATCTTTGAAAATGTTCCACA+AGG | - | chr1_1:2391535-2391554 | None:intergenic | 30.0% |
| TTGCTACAGTTGTAAAAAAC+AGG | + | chr1_1:2391554-2391573 | Msa0000990:CDS | 30.0% | |
| CAAGATAGCTAACTTACAAA+TGG | - | chr1_1:2391581-2391600 | None:intergenic | 30.0% | |
| TAACTTATGAGATAATGCCA+AGG | + | chr1_1:2391747-2391766 | Msa0000990:intron | 30.0% | |
| AACTTATGAGATAATGCCAA+GGG | + | chr1_1:2391748-2391767 | Msa0000990:intron | 30.0% | |
| ! | TATGTTGCTTATATTCTCAC+TGG | + | chr1_1:2391776-2391795 | Msa0000990:intron | 30.0% |
| CAAACACTAAAACATTATCG+AGG | + | chr1_1:2391827-2391846 | Msa0000990:intron | 30.0% | |
| ! | AGAAGCATGTAATGAATTGA+TGG | + | chr1_1:2391890-2391909 | Msa0000990:CDS | 30.0% |
| TATTTATGCAAAGGAAAGGA+AGG | - | chr1_1:2392002-2392021 | None:intergenic | 30.0% | |
| GTCATATTTATGCAAAGGAA+AGG | - | chr1_1:2392006-2392025 | None:intergenic | 30.0% | |
| TATAAAAATCCACAAACACG+AGG | - | chr1_1:2392048-2392067 | None:intergenic | 30.0% | |
| ! | TAACTTGTGACTTCTAATCT+AGG | - | chr1_1:2392386-2392405 | None:intergenic | 30.0% |
| ! | AAGGTATTTGTTAAGACTTG+AGG | + | chr1_1:2392471-2392490 | Msa0000990:intron | 30.0% |
| AGTACAGTAAGATGAAGAAT+AGG | - | chr1_1:2392671-2392690 | None:intergenic | 30.0% | |
| ATTTCTTATCAATGCTCAAG+TGG | + | chr1_1:2392872-2392891 | Msa0000990:intron | 30.0% | |
| ! | TTGATATTTAACCGTTTTGC+AGG | + | chr1_1:2392906-2392925 | Msa0000990:intron | 30.0% |
| TTACTTAAGATTCCATGTAC+TGG | - | chr1_1:2392965-2392984 | None:intergenic | 30.0% | |
| TCCTAAAAGACATTATGTAG+AGG | + | chr1_1:2393023-2393042 | Msa0000990:three_prime_UTR | 30.0% | |
| ! | CGTGAAAAAGCATAGAATTC+AGG | - | chr1_1:2387742-2387761 | None:intergenic | 35.0% |
| ACTTGCAGGAAATTGAAGAA+GGG | - | chr1_1:2387767-2387786 | None:intergenic | 35.0% | |
| TACTTGCAGGAAATTGAAGA+AGG | - | chr1_1:2387768-2387787 | None:intergenic | 35.0% | |
| ! | GCAATGCATTTGAAGTTGAT+TGG | + | chr1_1:2388719-2388738 | Msa0000990:CDS | 35.0% |
| ! | ACTCAGAAGGTCTTATATGT+TGG | + | chr1_1:2388823-2388842 | Msa0000990:CDS | 35.0% |
| TCGAAGTTACCTGTATTTGT+TGG | + | chr1_1:2388862-2388881 | Msa0000990:CDS | 35.0% | |
| ! | TTACCTGTATTTGTTGGCAA+TGG | + | chr1_1:2388868-2388887 | Msa0000990:CDS | 35.0% |
| ! | TACCTGTATTTGTTGGCAAT+GGG | + | chr1_1:2388869-2388888 | Msa0000990:CDS | 35.0% |
| TTGAGTGAGTAATTGGCAAA+TGG | + | chr1_1:2389152-2389171 | Msa0000990:intron | 35.0% | |
| CGGACAATCTAGTAAATAAG+TGG | - | chr1_1:2389318-2389337 | None:intergenic | 35.0% | |
| ! | CCAGGAATTTTCATTTCACT+GGG | - | chr1_1:2389388-2389407 | None:intergenic | 35.0% |
| ! | ACCAGGAATTTTCATTTCAC+TGG | - | chr1_1:2389389-2389408 | None:intergenic | 35.0% |
| ! | ATCCCAGATTTTCATAAACC+AGG | - | chr1_1:2389406-2389425 | None:intergenic | 35.0% |
| TCCTAGCTACTATGCATAAA+TGG | + | chr1_1:2389521-2389540 | Msa0000990:intron | 35.0% | |
| CCTAGCTACTATGCATAAAT+GGG | + | chr1_1:2389522-2389541 | Msa0000990:intron | 35.0% | |
| TGTTCATGTATGCAGAAGAA+GGG | - | chr1_1:2389714-2389733 | None:intergenic | 35.0% | |
| TTGTTCATGTATGCAGAAGA+AGG | - | chr1_1:2389715-2389734 | None:intergenic | 35.0% | |
| TAGGATTCAACTCATTTGTC+AGG | + | chr1_1:2389797-2389816 | Msa0000990:intron | 35.0% | |
| CCAAAACCAACTCTATCTAA+AGG | - | chr1_1:2389862-2389881 | None:intergenic | 35.0% | |
| !! | CCTTTAGATAGAGTTGGTTT+TGG | + | chr1_1:2389859-2389878 | Msa0000990:intron | 35.0% |
| ACATCTCTCACAAACATGAT+TGG | - | chr1_1:2389963-2389982 | None:intergenic | 35.0% | |
| GTCTAAGTCCTTACAAATGT+AGG | - | chr1_1:2390044-2390063 | None:intergenic | 35.0% | |
| AGCATCCGAATGTGTAAATT+TGG | + | chr1_1:2390098-2390117 | Msa0000990:intron | 35.0% | |
| TCCGAATGTGTAAATTTGGT+TGG | + | chr1_1:2390102-2390121 | Msa0000990:intron | 35.0% | |
| !! | AATTGCTTTTCTGCTCATTC+AGG | + | chr1_1:2390145-2390164 | Msa0000990:intron | 35.0% |
| AGGTTATTGAACATGATCAG+CGG | + | chr1_1:2390177-2390196 | Msa0000990:CDS | 35.0% | |
| ! | TTTAAAACCTGATCCTGACA+AGG | + | chr1_1:2390244-2390263 | Msa0000990:CDS | 35.0% |
| ACAAAGGTCACAAGCAAATT+TGG | + | chr1_1:2390367-2390386 | Msa0000990:CDS | 35.0% | |
| TGAAAGACCATTGTCATCAT+TGG | - | chr1_1:2390516-2390535 | None:intergenic | 35.0% | |
| !!! | AAAGAGTATCCACTTTTGCA+TGG | - | chr1_1:2390553-2390572 | None:intergenic | 35.0% |
| !! | GTGTTTGGTGCTTATATACA+TGG | + | chr1_1:2390717-2390736 | Msa0000990:intron | 35.0% |
| CAGATATTCTGTTTCCCAAA+AGG | + | chr1_1:2390747-2390766 | Msa0000990:intron | 35.0% | |
| GAACATACAAAGAGAAGGTT+CGG | - | chr1_1:2390839-2390858 | None:intergenic | 35.0% | |
| AATAGCGAACCATAATGTAC+AGG | - | chr1_1:2390929-2390948 | None:intergenic | 35.0% | |
| AATTAGCCCTTATGTCTTTG+TGG | + | chr1_1:2391166-2391185 | Msa0000990:intron | 35.0% | |
| AAGACATTCTTCTATCCTTG+TGG | + | chr1_1:2391517-2391536 | Msa0000990:CDS | 35.0% | |
| ! | GTTGCTATACTTGTTGCATT+AGG | + | chr1_1:2391937-2391956 | Msa0000990:CDS | 35.0% |
| TTACACAGCACCACAAAAAA+TGG | - | chr1_1:2392120-2392139 | None:intergenic | 35.0% | |
| ATAATGTATTTGTCGAGCCT+TGG | + | chr1_1:2392333-2392352 | Msa0000990:intron | 35.0% | |
| ! | TCGTAGTTACTTTCTATGGT+AGG | + | chr1_1:2392542-2392561 | Msa0000990:intron | 35.0% |
| ! | CGTAGTTACTTTCTATGGTA+GGG | + | chr1_1:2392543-2392562 | Msa0000990:intron | 35.0% |
| ! | GTAGTTACTTTCTATGGTAG+GGG | + | chr1_1:2392544-2392563 | Msa0000990:intron | 35.0% |
| ! | TAGTTACTTTCTATGGTAGG+GGG | + | chr1_1:2392545-2392564 | Msa0000990:intron | 35.0% |
| TTCTCTCCATTCTTGTACAA+GGG | - | chr1_1:2392616-2392635 | None:intergenic | 35.0% | |
| ATTGAACAGCTTGCATGATA+AGG | - | chr1_1:2392724-2392743 | None:intergenic | 35.0% | |
| ! | AATTTTACAGCAAGTGCAAC+AGG | - | chr1_1:2392756-2392775 | None:intergenic | 35.0% |
| AGATGAAGAATACATGGTTC+TGG | - | chr1_1:2392788-2392807 | None:intergenic | 35.0% | |
| !! | GTAGCTTTTTAAGCCCTAAA+TGG | + | chr1_1:2392847-2392866 | Msa0000990:intron | 35.0% |
| TAAGATTCCATGTACTGGAT+AGG | - | chr1_1:2392960-2392979 | None:intergenic | 35.0% | |
| TTTAGTTGTTTAGGGATCCA+AGG | + | chr1_1:2393000-2393019 | Msa0000990:three_prime_UTR | 35.0% | |
| !!! | CATAATGTCTTTTAGGACCT+TGG | - | chr1_1:2393020-2393039 | None:intergenic | 35.0% |
| ! | GCCTCTACATAATGTCTTTT+AGG | - | chr1_1:2393027-2393046 | None:intergenic | 35.0% |
| ! | AAGGCAAGAACCATGTATTT+TGG | + | chr1_1:2393065-2393084 | Msa0000990:three_prime_UTR | 35.0% |
| ACAGTGAGAACCAAAATACA+TGG | - | chr1_1:2393078-2393097 | None:intergenic | 35.0% | |
| ATGTTGTGTAGCTTCTAGAT+TGG | + | chr1_1:2393134-2393153 | Msa0000990:three_prime_UTR | 35.0% | |
| ! | ATTCCTAAGACGCATTTTGA+CGG | + | chr1_1:2393232-2393251 | Msa0000990:three_prime_UTR | 35.0% |
| TGATGACAGACATTGCTTTG+CGG | - | chr1_1:2387719-2387738 | None:intergenic | 40.0% | |
| AAGAATGGAAGATTTGACGC+TGG | - | chr1_1:2388193-2388212 | None:intergenic | 40.0% | |
| ! | AGCTGATGTGGCTTGATTTT+AGG | + | chr1_1:2388545-2388564 | Msa0000990:intron | 40.0% |
| ! | AGGTTGATTCTCAGAGAAGA+TGG | + | chr1_1:2388565-2388584 | Msa0000990:intron | 40.0% |
| GCAAATATAGCGCAATTGAC+TGG | + | chr1_1:2388614-2388633 | Msa0000990:CDS | 40.0% | |
| ! | GTAGATGCTGTGAAGTTGAT+TGG | + | chr1_1:2388638-2388657 | Msa0000990:CDS | 40.0% |
| ! | GAAGTTGATTGGGAACTTGT+TGG | + | chr1_1:2388730-2388749 | Msa0000990:CDS | 40.0% |
| ATCCCATTGCCAACAAATAC+AGG | - | chr1_1:2388874-2388893 | None:intergenic | 40.0% | |
| ! | TGTATTTGTTGGCAATGGGA+TGG | + | chr1_1:2388873-2388892 | Msa0000990:CDS | 40.0% |
| TGATAAGAGGAACAAGACGT+AGG | - | chr1_1:2388946-2388965 | None:intergenic | 40.0% | |
| TGTTCCTCTTATCACTCTTG+TGG | + | chr1_1:2388952-2388971 | Msa0000990:CDS | 40.0% | |
| TTGTCCACAAGAGTGATAAG+AGG | - | chr1_1:2388959-2388978 | None:intergenic | 40.0% | |
| TCTGCTATCTCTTGTGTGAA+TGG | + | chr1_1:2389004-2389023 | Msa0000990:intron | 40.0% | |
| ACTCACTCAATATGCTTGCA+TGG | - | chr1_1:2389142-2389161 | None:intergenic | 40.0% | |
| ATTTACTAGATTGTCCGGGT+CGG | + | chr1_1:2389321-2389340 | Msa0000990:intron | 40.0% | |
| CACCTGCCATACGAAAATAT+TGG | + | chr1_1:2389362-2389381 | Msa0000990:intron | 40.0% | |
| ! | ACTGGGCCAATATTTTCGTA+TGG | - | chr1_1:2389371-2389390 | None:intergenic | 40.0% |
| CCCAGTGAAATGAAAATTCC+TGG | + | chr1_1:2389385-2389404 | Msa0000990:intron | 40.0% | |
| CCCATTTATGCATAGTAGCT+AGG | - | chr1_1:2389525-2389544 | None:intergenic | 40.0% | |
| TGTGGTCCTTTAGATAGAGT+TGG | + | chr1_1:2389853-2389872 | Msa0000990:intron | 40.0% | |
| GGTTATTGAACATGATCAGC+GGG | + | chr1_1:2390178-2390197 | Msa0000990:CDS | 40.0% | |
| GGAATACACATTAGACGATG+AGG | + | chr1_1:2390199-2390218 | Msa0000990:CDS | 40.0% | |
| AGCTTAACCTAGAGCTACAA+AGG | + | chr1_1:2390351-2390370 | Msa0000990:CDS | 40.0% | |
| ! | AGTAGCAGAGTATTCTCTTC+CGG | + | chr1_1:2390436-2390455 | Msa0000990:CDS | 40.0% |
| !!! | TTTTCAGGTGAACACTTGTC+CGG | - | chr1_1:2390458-2390477 | None:intergenic | 40.0% |
| TCTGATGCCAATGATGACAA+TGG | + | chr1_1:2390506-2390525 | Msa0000990:CDS | 40.0% | |
| TGGATACTCTTTCGCAATCA+AGG | + | chr1_1:2390561-2390580 | Msa0000990:CDS | 40.0% | |
| TTTCCCTCTTCGACAACTTA+AGG | + | chr1_1:2390591-2390610 | Msa0000990:intron | 40.0% | |
| ! | ACACCTTAAGTTGTCGAAGA+GGG | - | chr1_1:2390597-2390616 | None:intergenic | 40.0% |
| ! | AACACCTTAAGTTGTCGAAG+AGG | - | chr1_1:2390598-2390617 | None:intergenic | 40.0% |
| !! | TCGACAACTTAAGGTGTTGT+AGG | + | chr1_1:2390600-2390619 | Msa0000990:intron | 40.0% |
| !! | AAGGTGTTGTAGGTTCACTT+AGG | + | chr1_1:2390610-2390629 | Msa0000990:intron | 40.0% |
| ! | GGTTGACATCATGTCCTTTT+GGG | - | chr1_1:2390764-2390783 | None:intergenic | 40.0% |
| CAAAAGGACATGATGTCAAC+CGG | + | chr1_1:2390763-2390782 | Msa0000990:CDS | 40.0% | |
| GTTCATATCAGCAGGAAGAT+TGG | + | chr1_1:2390788-2390807 | Msa0000990:CDS | 40.0% | |
| GGAGAGAACATACAAAGAGA+AGG | - | chr1_1:2390844-2390863 | None:intergenic | 40.0% | |
| CACAAGCCACAAAGACATAA+GGG | - | chr1_1:2391175-2391194 | None:intergenic | 40.0% | |
| !! | CATGCCTGAGTTAACTTGTA+AGG | - | chr1_1:2391302-2391321 | None:intergenic | 40.0% |
| TCAGGCATGAGTAATTGTCA+AGG | + | chr1_1:2391313-2391332 | Msa0000990:intron | 40.0% | |
| TAAGCAACATAGAGAACCCT+TGG | - | chr1_1:2391767-2391786 | None:intergenic | 40.0% | |
| TTCATTACATGCTTCTGCAG+AGG | - | chr1_1:2391886-2391905 | None:intergenic | 40.0% | |
| GCAACAAGTATAGCAACAAC+AGG | - | chr1_1:2391934-2391953 | None:intergenic | 40.0% | |
| GTTGCATTAGGAGAAAGCTT+CGG | + | chr1_1:2391949-2391968 | Msa0000990:CDS | 40.0% | |
| GACTTCTAATCTAGGTCACA+TGG | - | chr1_1:2392378-2392397 | None:intergenic | 40.0% | |
| CAAGTAGAGAGACAGTTTCA+AGG | - | chr1_1:2392412-2392431 | None:intergenic | 40.0% | |
| AACTGTCTCTCTACTTGTAG+AGG | + | chr1_1:2392415-2392434 | Msa0000990:intron | 40.0% | |
| ! | AGTTACTTTCTATGGTAGGG+GGG | + | chr1_1:2392546-2392565 | Msa0000990:intron | 40.0% |
| CTTCTCTCCATTCTTGTACA+AGG | - | chr1_1:2392617-2392636 | None:intergenic | 40.0% | |
| ! | CATGATAAGGCACTTCAAAC+AGG | - | chr1_1:2392711-2392730 | None:intergenic | 40.0% |
| ! | ATTTAACCGTTTTGCAGGTG+CGG | + | chr1_1:2392911-2392930 | Msa0000990:intron | 40.0% |
| AGACATTATGTAGAGGCTAC+TGG | + | chr1_1:2393030-2393049 | Msa0000990:three_prime_UTR | 40.0% | |
| CTACTGGCATTCTAACTTGA+AGG | + | chr1_1:2393046-2393065 | Msa0000990:three_prime_UTR | 40.0% | |
| !! | TTCCTAAGACGCATTTTGAC+GGG | + | chr1_1:2393233-2393252 | Msa0000990:three_prime_UTR | 40.0% |
| GATGACAGACATTGCTTTGC+GGG | - | chr1_1:2387718-2387737 | None:intergenic | 45.0% | |
| AAATCAAGCCACATCAGCTC+AGG | - | chr1_1:2388544-2388563 | None:intergenic | 45.0% | |
| ! | TGAAAGCTGCAAGTACTGCA+AGG | + | chr1_1:2388669-2388688 | Msa0000990:CDS | 45.0% |
| TCAAGATCTCTGAGCTGAAG+AGG | + | chr1_1:2388759-2388778 | Msa0000990:CDS | 45.0% | |
| AGCTTGAAGATGCACTCAGA+AGG | + | chr1_1:2388810-2388829 | Msa0000990:CDS | 45.0% | |
| TGATGCCTAAGCCTAACTCT+GGG | + | chr1_1:2389233-2389252 | Msa0000990:intron | 45.0% | |
| CAAATCTTCCACCCAGAGTT+AGG | - | chr1_1:2389247-2389266 | None:intergenic | 45.0% | |
| TTTACTAGATTGTCCGGGTC+GGG | + | chr1_1:2389322-2389341 | Msa0000990:intron | 45.0% | |
| ATTTAATAGCAGACCCGACC+CGG | - | chr1_1:2389338-2389357 | None:intergenic | 45.0% | |
| ! | GGCCAATATTTTCGTATGGC+AGG | - | chr1_1:2389367-2389386 | None:intergenic | 45.0% |
| ATTAGACGATGAGGACCAAC+AGG | + | chr1_1:2390208-2390227 | Msa0000990:CDS | 45.0% | |
| AAATAACTGTGTGCGCCTGT+TGG | - | chr1_1:2390226-2390245 | None:intergenic | 45.0% | |
| AAAACCTGATCCTGACAAGG+AGG | + | chr1_1:2390247-2390266 | Msa0000990:CDS | 45.0% | |
| AGTACAGTTGGGGTAAGAAC+AGG | - | chr1_1:2390300-2390319 | None:intergenic | 45.0% | |
| ! | CTTCAGGGAAAGTACAGTTG+GGG | - | chr1_1:2390310-2390329 | None:intergenic | 45.0% |
| ! | GCTTCAGGGAAAGTACAGTT+GGG | - | chr1_1:2390311-2390330 | None:intergenic | 45.0% |
| CTTGTGACCTTTGTAGCTCT+AGG | - | chr1_1:2390361-2390380 | None:intergenic | 45.0% | |
| GGTGCTTATATACATGGCCT+CGG | + | chr1_1:2390723-2390742 | Msa0000990:intron | 45.0% | |
| GGAAACAGAATATCTGTCCG+AGG | - | chr1_1:2390743-2390762 | None:intergenic | 45.0% | |
| ! | CGGTTGACATCATGTCCTTT+TGG | - | chr1_1:2390765-2390784 | None:intergenic | 45.0% |
| TTCCTGCTGATATGAACCTC+CGG | - | chr1_1:2390785-2390804 | None:intergenic | 45.0% | |
| GCACAAGCCACAAAGACATA+AGG | - | chr1_1:2391176-2391195 | None:intergenic | 45.0% | |
| TGGTATAGCATTTGGTCTGC+AGG | + | chr1_1:2391490-2391509 | Msa0000990:intron | 45.0% | |
| CACAAACACGAGGCATAAAG+AGG | - | chr1_1:2392038-2392057 | None:intergenic | 45.0% | |
| CTCTTTATGCCTCGTGTTTG+TGG | + | chr1_1:2392036-2392055 | Msa0000990:intron | 45.0% | |
| GTCTCTCTACTTGTAGAGGT+AGG | + | chr1_1:2392419-2392438 | Msa0000990:intron | 45.0% | |
| GTTGTGCCCTTGTACAAGAA+TGG | + | chr1_1:2392607-2392626 | Msa0000990:CDS | 45.0% | |
| AAGACATACCACTAACCCCA+CGG | - | chr1_1:2392647-2392666 | None:intergenic | 45.0% | |
| GATTCCATGTACTGGATAGG+TGG | - | chr1_1:2392957-2392976 | None:intergenic | 45.0% | |
| !! | AAAAATTATAAATGTAATTA+TGG | + | chr1_1:2388508-2388527 | Msa0000990:intron | 5.0% |
| ACTGATGTCCTGAGCTGATG+TGG | + | chr1_1:2388533-2388552 | Msa0000990:intron | 50.0% | |
| ATGGCGTCGTGGGAACATAT+GGG | + | chr1_1:2388584-2388603 | Msa0000990:CDS | 50.0% | |
| !! | TGAAGAGGTACCCGGAAACT+AGG | + | chr1_1:2388774-2388793 | Msa0000990:CDS | 50.0% |
| !! | GAAGAGGTACCCGGAAACTA+GGG | + | chr1_1:2388775-2388794 | Msa0000990:CDS | 50.0% |
| TTGTGGACAATGCTCGAGTC+AGG | + | chr1_1:2388969-2388988 | Msa0000990:CDS | 50.0% | |
| TGTGGACAATGCTCGAGTCA+GGG | + | chr1_1:2388970-2388989 | Msa0000990:CDS | 50.0% | |
| GTGATGCCTAAGCCTAACTC+TGG | + | chr1_1:2389232-2389251 | Msa0000990:intron | 50.0% | |
| TTCCACCCAGAGTTAGGCTT+AGG | - | chr1_1:2389241-2389260 | None:intergenic | 50.0% | |
| GGGTGGAAGATTTGAGAGAC+TGG | + | chr1_1:2389253-2389272 | Msa0000990:intron | 50.0% | |
| GCTCATTCAGGAGAGACTTG+AGG | + | chr1_1:2390157-2390176 | Msa0000990:intron | 50.0% | |
| GTATCCTCCTTGTCAGGATC+AGG | - | chr1_1:2390254-2390273 | None:intergenic | 50.0% | |
| ACTGCAGTATCCTCCTTGTC+AGG | - | chr1_1:2390260-2390279 | None:intergenic | 50.0% | |
| ! | CGCTTCAGGGAAAGTACAGT+TGG | - | chr1_1:2390312-2390331 | None:intergenic | 50.0% |
| AAGGACATGATGTCAACCGG+AGG | + | chr1_1:2390766-2390785 | Msa0000990:CDS | 50.0% | |
| AACCGGAGGTTCATATCAGC+AGG | + | chr1_1:2390780-2390799 | Msa0000990:CDS | 50.0% | |
| AGGTCACATGGCAGCAATCA+CGG | - | chr1_1:2392366-2392385 | None:intergenic | 50.0% | |
| TCTTCTCCGCACCTGCAAAA+CGG | - | chr1_1:2392920-2392939 | None:intergenic | 50.0% | |
| !! | GATAGGTGGAGGGCTTGTTT+TGG | - | chr1_1:2392943-2392962 | None:intergenic | 50.0% |
| CCATGTACTGGATAGGTGGA+GGG | - | chr1_1:2392953-2392972 | None:intergenic | 50.0% | |
| TCCATGTACTGGATAGGTGG+AGG | - | chr1_1:2392954-2392973 | None:intergenic | 50.0% | |
| CACCCGTCAAAATGCGTCTT+AGG | - | chr1_1:2393238-2393257 | None:intergenic | 50.0% | |
| TCTCAGAGAAGATGGCGTCG+TGG | + | chr1_1:2388573-2388592 | Msa0000990:exon | 55.0% | |
| CTCAGAGAAGATGGCGTCGT+GGG | + | chr1_1:2388574-2388593 | Msa0000990:exon | 55.0% | |
| GATGGCGTCGTGGGAACATA+TGG | + | chr1_1:2388583-2388602 | Msa0000990:exon | 55.0% | |
| TGGCGTCGTGGGAACATATG+GGG | + | chr1_1:2388585-2388604 | Msa0000990:CDS | 55.0% | |
| !! | CTCTGAGCTGAAGAGGTACC+CGG | + | chr1_1:2388766-2388785 | Msa0000990:CDS | 55.0% |
| TCCAGAGGCTCCCTAGTTTC+CGG | - | chr1_1:2388788-2388807 | None:intergenic | 55.0% | |
| GCATCTTCAAGCTGCTCCAG+AGG | - | chr1_1:2388803-2388822 | None:intergenic | 55.0% | |
| TGCCTAAGCCTAACTCTGGG+TGG | + | chr1_1:2389236-2389255 | Msa0000990:intron | 55.0% | |
| !! | GCAATCACGGTGTTGTGCCA+AGG | - | chr1_1:2392353-2392372 | None:intergenic | 55.0% |
| CCCTCCACCTATCCAGTACA+TGG | + | chr1_1:2392950-2392969 | Msa0000990:CDS | 55.0% | |
| GGCGTCGTGGGAACATATGG+GGG | + | chr1_1:2388586-2388605 | Msa0000990:CDS | 60.0% | |
| CCAGAGGCTCCCTAGTTTCC+GGG | - | chr1_1:2388787-2388806 | None:intergenic | 60.0% | |
| ! | TGTGGCTTGTGCGATGTGCG+TGG | + | chr1_1:2391184-2391203 | Msa0000990:intron | 60.0% |
| CCCGGAAACTAGGGAGCCTC+TGG | + | chr1_1:2388784-2388803 | Msa0000990:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 2387637 | 2393264 | 2387637 | ID=Msa0000990;Name=Msa0000990 |
| chr1_1 | mRNA | 2387637 | 2393264 | 2387637 | ID=Msa0000990-mRNA-1;Parent=Msa0000990;Name=Msa0000990-mRNA-1;_AED=0.16;_eAED=0.16;_QI=287|1|1|1|0.75|0.66|9|284|416 |
| chr1_1 | exon | 2387637 | 2387784 | 2387637 | ID=Msa0000990-mRNA-1:exon:561;Parent=Msa0000990-mRNA-1 |
| chr1_1 | exon | 2388129 | 2388250 | 2388129 | ID=Msa0000990-mRNA-1:exon:562;Parent=Msa0000990-mRNA-1 |
| chr1_1 | exon | 2388567 | 2388991 | 2388567 | ID=Msa0000990-mRNA-1:exon:563;Parent=Msa0000990-mRNA-1 |
| chr1_1 | exon | 2390167 | 2390582 | 2390167 | ID=Msa0000990-mRNA-1:exon:564;Parent=Msa0000990-mRNA-1 |
| chr1_1 | exon | 2390750 | 2390850 | 2390750 | ID=Msa0000990-mRNA-1:exon:565;Parent=Msa0000990-mRNA-1 |
| chr1_1 | exon | 2391512 | 2391583 | 2391512 | ID=Msa0000990-mRNA-1:exon:566;Parent=Msa0000990-mRNA-1 |
| chr1_1 | exon | 2391883 | 2391989 | 2391883 | ID=Msa0000990-mRNA-1:exon:567;Parent=Msa0000990-mRNA-1 |
| chr1_1 | exon | 2392564 | 2392657 | 2392564 | ID=Msa0000990-mRNA-1:exon:568;Parent=Msa0000990-mRNA-1 |
| chr1_1 | exon | 2392928 | 2393264 | 2392928 | ID=Msa0000990-mRNA-1:exon:569;Parent=Msa0000990-mRNA-1 |
| chr1_1 | five_prime_UTR | 2387637 | 2387784 | 2387637 | ID=Msa0000990-mRNA-1:five_prime_utr;Parent=Msa0000990-mRNA-1 |
| chr1_1 | five_prime_UTR | 2388129 | 2388250 | 2388129 | ID=Msa0000990-mRNA-1:five_prime_utr;Parent=Msa0000990-mRNA-1 |
| chr1_1 | five_prime_UTR | 2388567 | 2388583 | 2388567 | ID=Msa0000990-mRNA-1:five_prime_utr;Parent=Msa0000990-mRNA-1 |
| chr1_1 | CDS | 2388584 | 2388991 | 2388584 | ID=Msa0000990-mRNA-1:cds;Parent=Msa0000990-mRNA-1 |
| chr1_1 | CDS | 2390167 | 2390582 | 2390167 | ID=Msa0000990-mRNA-1:cds;Parent=Msa0000990-mRNA-1 |
| chr1_1 | CDS | 2390750 | 2390850 | 2390750 | ID=Msa0000990-mRNA-1:cds;Parent=Msa0000990-mRNA-1 |
| chr1_1 | CDS | 2391512 | 2391583 | 2391512 | ID=Msa0000990-mRNA-1:cds;Parent=Msa0000990-mRNA-1 |
| chr1_1 | CDS | 2391883 | 2391989 | 2391883 | ID=Msa0000990-mRNA-1:cds;Parent=Msa0000990-mRNA-1 |
| chr1_1 | CDS | 2392564 | 2392657 | 2392564 | ID=Msa0000990-mRNA-1:cds;Parent=Msa0000990-mRNA-1 |
| chr1_1 | CDS | 2392928 | 2392980 | 2392928 | ID=Msa0000990-mRNA-1:cds;Parent=Msa0000990-mRNA-1 |
| chr1_1 | three_prime_UTR | 2392981 | 2393264 | 2392981 | ID=Msa0000990-mRNA-1:three_prime_utr;Parent=Msa0000990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
