AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0800730

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0800730 MtrunA17_Chr5g0407121 98.655 446 6 0 1 446 1 446 0.0 919
Msa0800730 MtrunA17_Chr8g0370321 82.063 446 76 2 1 446 1 442 0.0 739
Msa0800730 MtrunA17_Chr1g0179611 52.854 473 163 6 2 415 8 479 2.04e-174 499
Msa0800730 MtrunA17_Chr2g0320631 48.450 516 186 5 6 442 8 522 1.01e-169 487
Msa0800730 MtrunA17_Chr4g0027671 51.496 468 162 5 12 415 13 479 3.67e-169 486
Msa0800730 MtrunA17_Chr3g0139371 31.525 387 195 10 37 414 73 398 1.61e-44 160
Msa0800730 MtrunA17_Chr3g0116701 27.970 404 219 10 21 414 78 419 1.36e-37 142
Msa0800730 MtrunA17_Chr4g0058241 28.429 401 215 11 21 411 82 420 2.71e-37 141
Msa0800730 MtrunA17_Chr3g0123491 27.873 409 217 12 21 415 77 421 1.27e-33 130
Msa0800730 MtrunA17_Chr5g0437131 24.495 396 205 11 29 414 394 705 4.41e-24 105
Msa0800730 MtrunA17_Chr8g0369241 40.000 145 81 3 37 180 138 277 3.10e-22 100
Msa0800730 MtrunA17_Chr8g0369241 39.450 109 58 3 254 361 285 386 5.01e-14 74.7
Msa0800730 MtrunA17_Chr6g0480541 31.953 169 100 5 252 414 1041 1200 2.67e-20 94.4
Msa0800730 MtrunA17_Chr6g0480541 32.544 169 101 5 15 179 879 1038 1.87e-14 75.9
Msa0800730 MtrunA17_Chr1g0210061 34.615 182 85 8 254 414 757 925 1.01e-14 76.6
Msa0800730 MtrunA17_Chr1g0210061 30.814 172 100 5 11 177 592 749 3.33e-14 75.1
Msa0800730 MtrunA17_Chr2g0309421 26.117 291 182 10 42 317 181 453 1.76e-12 69.3
Msa0800730 MtrunA17_Chr3g0140071 30.822 146 85 5 34 177 5 136 3.36e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0800730 AT4G35500.1 72.870 446 109 4 1 443 1 437 0.0 653
Msa0800730 AT2G17530.1 75.730 445 97 4 1 443 1 436 0.0 647
Msa0800730 AT2G17530.3 75.730 445 97 4 1 443 1 436 0.0 647
Msa0800730 AT4G35500.2 70.694 447 118 5 1 443 1 438 0.0 628
Msa0800730 AT2G17530.2 79.592 343 67 3 1 341 1 342 0.0 517
Msa0800730 AT3G53030.1 49.901 505 184 8 5 442 7 509 4.74e-171 491
Msa0800730 AT3G44850.1 51.613 465 163 7 12 415 19 482 1.64e-164 474
Msa0800730 AT5G22840.1 50.753 465 172 5 4 415 11 471 7.38e-164 473
Msa0800730 AT4G32660.1 30.123 405 209 12 21 414 55 396 1.67e-41 152
Msa0800730 AT4G32660.3 30.123 405 209 12 21 414 47 388 1.77e-41 152
Msa0800730 AT4G24740.7 29.310 406 211 12 21 414 44 385 3.25e-38 143
Msa0800730 AT4G24740.1 29.310 406 211 12 21 414 82 423 6.35e-38 143
Msa0800730 AT4G32660.2 30.861 337 171 10 21 356 55 330 1.93e-37 140
Msa0800730 AT4G24740.6 29.504 383 195 11 44 414 1 320 9.63e-37 137
Msa0800730 AT4G24740.9 29.504 383 195 11 44 414 1 320 9.63e-37 137
Msa0800730 AT4G24740.2 29.504 383 195 11 44 414 1 320 9.63e-37 137
Msa0800730 AT3G53570.1 28.676 408 216 11 21 415 99 444 1.21e-35 137
Msa0800730 AT3G53570.4 28.676 408 216 11 21 415 99 444 1.21e-35 137
Msa0800730 AT3G53570.2 28.676 408 216 11 21 415 99 444 1.21e-35 137
Msa0800730 AT3G53570.3 28.676 408 216 11 21 415 85 430 1.38e-35 137
Msa0800730 AT3G53570.5 28.676 408 216 11 21 415 85 430 1.38e-35 137
Msa0800730 AT4G24740.3 30.530 321 164 9 21 341 82 343 5.82e-34 130
Msa0800730 AT4G24740.5 30.872 298 148 8 44 341 1 240 1.02e-32 124
Msa0800730 AT4G32660.4 30.523 344 166 12 82 414 3 284 8.74e-32 123
Msa0800730 AT4G24740.4 30.420 286 147 8 21 306 82 315 6.75e-28 113
Msa0800730 AT5G35980.3 38.667 150 86 3 37 185 86 230 2.51e-22 100
Msa0800730 AT5G35980.3 42.424 99 50 2 254 352 232 323 1.77e-15 79.7
Msa0800730 AT5G35980.1 38.667 150 86 3 37 185 121 265 2.56e-22 100
Msa0800730 AT5G35980.1 42.424 99 50 2 254 352 267 358 1.90e-15 79.3
Msa0800730 AT5G35980.2 38.667 150 86 3 37 185 121 265 2.78e-22 100
Msa0800730 AT5G35980.2 42.424 99 50 2 254 352 267 358 2.03e-15 79.3
Msa0800730 AT1G73460.2 32.941 170 99 5 252 415 1001 1161 2.60e-21 97.8
Msa0800730 AT1G73460.2 32.258 155 96 3 29 179 849 998 1.58e-13 73.6
Msa0800730 AT1G73460.1 32.941 170 99 5 252 415 1001 1161 2.60e-21 97.8
Msa0800730 AT1G73460.1 32.258 155 96 3 29 179 849 998 1.58e-13 73.6
Msa0800730 AT1G73450.1 32.941 170 99 5 252 415 984 1144 2.68e-21 97.8
Msa0800730 AT1G73450.1 32.258 155 96 3 29 179 832 981 1.57e-13 73.6
Msa0800730 AT2G40120.1 24.060 399 213 12 29 419 252 568 8.34e-21 95.5
Msa0800730 AT4G24740.10 29.811 265 117 8 162 414 10 217 1.52e-20 90.5
Msa0800730 AT4G24740.8 29.811 265 117 8 162 414 10 217 1.52e-20 90.5
Msa0800730 AT3G17750.1 31.953 169 100 5 252 414 970 1129 4.59e-18 87.8
Msa0800730 AT3G17750.1 31.953 169 102 5 15 179 808 967 1.65e-13 73.6
Msa0800730 AT3G53640.1 32.961 179 93 6 254 414 470 639 1.14e-16 82.8
Msa0800730 AT3G53640.1 31.395 172 99 5 11 177 305 462 2.52e-12 69.3
Msa0800730 AT3G12690.1 26.573 286 177 9 42 315 189 453 9.78e-15 77.0
Msa0800730 AT3G12690.3 26.573 286 177 9 42 315 189 453 9.78e-15 77.0
Msa0800730 AT3G12690.2 26.573 286 177 9 42 315 189 453 9.78e-15 77.0
Msa0800730 AT1G13350.1 31.395 172 99 5 11 177 424 581 4.04e-14 75.1
Msa0800730 AT1G13350.1 30.168 179 98 6 254 414 589 758 1.12e-13 73.9
Msa0800730 AT1G13350.2 31.395 172 99 5 11 177 451 608 5.04e-14 74.7
Msa0800730 AT1G13350.2 30.168 179 98 6 254 414 616 785 1.34e-13 73.6
Msa0800730 AT1G13350.3 31.395 172 99 5 11 177 497 654 5.82e-14 74.7
Msa0800730 AT1G13350.3 30.168 179 98 6 254 414 662 831 1.08e-13 73.9
Msa0800730 AT3G25840.2 31.638 177 97 6 254 414 502 670 7.09e-14 74.3
Msa0800730 AT3G25840.2 30.233 172 101 5 11 177 337 494 2.60e-12 69.3
Msa0800730 AT3G25840.1 31.638 177 97 6 254 414 764 932 1.94e-13 73.2
Msa0800730 AT3G25840.1 30.233 172 101 5 11 177 599 756 2.61e-12 69.7
Msa0800730 AT4G26610.1 27.003 337 202 13 2 317 87 400 2.55e-12 68.9
Msa0800730 AT1G04440.1 28.571 147 93 4 31 177 2 136 7.60e-11 64.3

Find 133 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATGCAAGATTGTCGATTT+TGG 0.222958 5_3:+14250493 Msa0800730:CDS
TACAAAGAATGTCACTAAAT+TGG 0.264728 5_3:-14252055 None:intergenic
ACCGGCATGGTGATCTAAAA+AGG 0.287476 5_3:+14251543 Msa0800730:CDS
TTTAGTGACATTCTTTGTAT+TGG 0.310376 5_3:+14252059 Msa0800730:three_prime_UTR
ATAACCTTGTCCACCACCTT+TGG 0.312925 5_3:-14250677 None:intergenic
TGCATGGTCCTTGAGTTTCT+TGG 0.316560 5_3:+14250091 Msa0800730:CDS
TAACCTTGTCCACCACCTTT+GGG 0.320820 5_3:-14250676 None:intergenic
TTTGAGAATCACCAATGAAA+TGG 0.326560 5_3:-14248445 None:intergenic
CCTCAGTCCGTTCTAAAGTT+GGG 0.329112 5_3:-14250318 None:intergenic
ATGTCTTGTTCTTCTTCATC+AGG 0.333473 5_3:+14248553 Msa0800730:CDS
AGTTCAGCCAGGGGTGTTGC+AGG 0.337595 5_3:-14251709 None:intergenic
ACTTTCCTACCTTGATTTGA+AGG 0.337930 5_3:-14251802 None:intergenic
GGGGAGAGTCCGGATCTAAA+AGG 0.349666 5_3:-14250298 None:intergenic
TCCGGATCTAAAAGGGTCTT+TGG 0.351019 5_3:-14250290 None:intergenic
ATGCAATGGTGCTGCCCATT+TGG 0.353666 5_3:-14250073 None:intergenic
TGGGAGTGTACTCACCTTCC+GGG 0.362905 5_3:-14251421 None:intergenic
AAGTGCGGCCGAGTTTGTTC+AGG 0.372250 5_3:+14249949 Msa0800730:CDS
GCGTGCAGTTGCTAAAATAT+CGG 0.390478 5_3:+14250399 Msa0800730:CDS
GATTCATTTCTCATTTCATT+TGG 0.391464 5_3:-14251746 None:intergenic
GCTTAAAGTTATCAATCAAT+TGG 0.393123 5_3:-14250042 None:intergenic
ATCTCTCTAACTTTATTCAA+TGG 0.394338 5_3:-14250160 None:intergenic
TGCTCAGAGGAAACTTGGTT+GGG 0.402208 5_3:+14248669 Msa0800730:CDS
GATTACTTGCATAGTGAACT+TGG 0.411710 5_3:+14250208 Msa0800730:CDS
CCCTCAGTCCGTTCTAAAGT+TGG 0.414075 5_3:-14250319 None:intergenic
GGGGTCAATTCTCCACCGTT+TGG 0.419364 5_3:+14248689 Msa0800730:CDS
TTTACCACAATCAAAGAATC+TGG 0.423144 5_3:+14251854 Msa0800730:three_prime_UTR
TTTAAGCACACAGGTCCAAA+TGG 0.425606 5_3:+14250058 Msa0800730:CDS
TGATTCATTGCAGTTCAGCC+AGG 0.429978 5_3:-14251720 None:intergenic
TTCTAAAGTTGGGGAGAGTC+CGG 0.433511 5_3:-14250308 None:intergenic
GGATCATCTTGCCTTGATGA+TGG 0.437810 5_3:+14251380 Msa0800730:intron
TTACAAGTCTTATTGAGAAA+AGG 0.437935 5_3:+14250359 Msa0800730:CDS
CCAGACTTCAGTATAACTTC+AGG 0.439622 5_3:-14250577 None:intergenic
TGTGGATTGCAGATTGCAAT+TGG 0.442014 5_3:+14251494 Msa0800730:intron
TTGAGAATCACCAATGAAAT+GGG 0.454404 5_3:-14248444 None:intergenic
AAATGAATCTACTGTGGAAA+AGG 0.456827 5_3:+14251760 Msa0800730:CDS
TATATTGCTCAGAGGAAACT+TGG 0.462401 5_3:+14248664 Msa0800730:CDS
ACAACAAACTTTGAATTCGA+TGG 0.467683 5_3:-14250019 None:intergenic
TTGTTCTTCTTCATCAGGAT+CGG 0.468336 5_3:+14248558 Msa0800730:CDS
GGCAATACCTGCAACACCCC+TGG 0.477580 5_3:+14251702 Msa0800730:CDS
CGGTCCAGATTCTTTGATTG+TGG 0.478246 5_3:-14251858 None:intergenic
TCAATGGAAGACCTTTGTAA+TGG 0.483257 5_3:-14250144 None:intergenic
CGTGCAGTTGCTAAAATATC+GGG 0.483843 5_3:+14250400 Msa0800730:CDS
GGAAGAACAACTTCAATTGA+AGG 0.487725 5_3:+14250421 Msa0800730:CDS
CCGACTTTGTTTCGACCTAA+CGG 0.488082 5_3:-14251878 None:intergenic
AACTCCTCGGAAAGATGCCC+CGG 0.493756 5_3:+14251403 Msa0800730:CDS
TTGCTCAGAGGAAACTTGGT+TGG 0.496479 5_3:+14248668 Msa0800730:CDS
TTCTTTCAACCATTGCTGAT+GGG 0.501024 5_3:+14249993 Msa0800730:CDS
CAGACTTCAGTATAACTTCA+GGG 0.503743 5_3:-14250576 None:intergenic
CCTGAAGTTATACTGAAGTC+TGG 0.506057 5_3:+14250577 Msa0800730:CDS
GATTCATTGCAGTTCAGCCA+GGG 0.507004 5_3:-14251719 None:intergenic
ATGCCGGTCAAAGTAATCCT+TGG 0.507357 5_3:-14251528 None:intergenic
GTTCTTTCAACCATTGCTGA+TGG 0.515507 5_3:+14249992 Msa0800730:CDS
TGTTTGATTGAGGCAAATGC+GGG 0.520079 5_3:+14251933 Msa0800730:three_prime_UTR
TCCGAGGAGTTCCATCATCA+AGG 0.521134 5_3:-14251391 None:intergenic
ATTGCTTTCGAGCTTGCCAC+TGG 0.524146 5_3:+14250637 Msa0800730:CDS
CTCAGTCCGTTCTAAAGTTG+GGG 0.526561 5_3:-14250317 None:intergenic
TCTTTCAACCATTGCTGATG+GGG 0.528594 5_3:+14249994 Msa0800730:CDS
AATCCAAGGATTACTTTGAC+CGG 0.528653 5_3:+14251525 Msa0800730:CDS
TATGAGCAACCTTCAAATCA+AGG 0.531115 5_3:+14251793 Msa0800730:CDS
TGGTTTGAATTGTTTGATTG+AGG 0.532138 5_3:+14251923 Msa0800730:three_prime_UTR
ACAACTTCAATTGAAGGAAG+AGG 0.534696 5_3:+14250427 Msa0800730:CDS
CAACAAACTTTGAATTCGAT+GGG 0.538001 5_3:-14250018 None:intergenic
ATCAAAGAATCTGGACCGTT+AGG 0.538356 5_3:+14251863 Msa0800730:three_prime_UTR
GGGAGAGTCCGGATCTAAAA+GGG 0.543496 5_3:-14250297 None:intergenic
TTATTTACACCCAAAGGTGG+TGG 0.545111 5_3:+14250667 Msa0800730:CDS
GAGATCCGATCTTAATCTGA+TGG 0.545249 5_3:+14251903 Msa0800730:three_prime_UTR
TGCAGGTATTGCCGTGCAGT+TGG 0.547161 5_3:-14251692 None:intergenic
GGATTGCAGATTGCAATTGG+TGG 0.549667 5_3:+14251497 Msa0800730:intron
ATGAGGGATTTGAGTCCTAT+CGG 0.552054 5_3:+14248590 Msa0800730:CDS
TTAAGCACACAGGTCCAAAT+GGG 0.558245 5_3:+14250059 Msa0800730:CDS
TCAATCAGCAATTTGTCAAG+TGG 0.561218 5_3:-14251587 None:intergenic
CTGATCAATTCGCGGGTGGG+AGG 0.561858 5_3:+14248641 Msa0800730:CDS
GATATGTTATTTACACCCAA+AGG 0.565138 5_3:+14250661 Msa0800730:CDS
TCAAACCATCAGATTAAGAT+CGG 0.565789 5_3:-14251908 None:intergenic
ACACCCAAAGGTGGTGGACA+AGG 0.567008 5_3:+14250673 Msa0800730:CDS
TAGAGTCGCTGATCAATTCG+CGG 0.570049 5_3:+14248633 Msa0800730:CDS
CCTTCCGGGGCATCTTTCCG+AGG 0.576947 5_3:-14251407 None:intergenic
CGATGGGTCCCCATCAGCAA+TGG 0.578011 5_3:-14250002 None:intergenic
TTCTTCTTCATCAGGATCGG+AGG 0.578889 5_3:+14248561 Msa0800730:CDS
ACAAGGTTATAGCGAGGATG+AGG 0.579359 5_3:+14250690 Msa0800730:CDS
CAAATGCGGGTCTGACTGCA+AGG 0.579453 5_3:+14251946 Msa0800730:three_prime_UTR
AAGGATTACTTTGACCGGCA+TGG 0.580864 5_3:+14251530 Msa0800730:CDS
ACTGTGGAAAAGGTTAATGT+TGG 0.582824 5_3:+14251770 Msa0800730:CDS
ATCAAATACAGCCATTACAA+AGG 0.586492 5_3:+14250133 Msa0800730:CDS
ATTCATTGCAGTTCAGCCAG+GGG 0.586651 5_3:-14251718 None:intergenic
AGGATCGGAGGAAGATGATG+AGG 0.592202 5_3:+14248573 Msa0800730:CDS
GATCTAAAAGGGTCTTTGGA+AGG 0.592260 5_3:-14250286 None:intergenic
GTCGCTGATCAATTCGCGGG+TGG 0.594980 5_3:+14248637 Msa0800730:CDS
AAGGGCAGCCTGAACAAACT+CGG 0.595404 5_3:-14249957 None:intergenic
TCGCTGATCAATTCGCGGGT+GGG 0.599945 5_3:+14248638 Msa0800730:CDS
ATTGATAACTTTAAGCACAC+AGG 0.601668 5_3:+14250049 Msa0800730:CDS
TGTAAATAACATATCTCCAG+TGG 0.603326 5_3:-14250653 None:intergenic
CGGACTGAGGGAAACACAAA+CGG 0.603582 5_3:+14250331 Msa0800730:CDS
TTTCAGGCTTTAAGTCTGTG+TGG 0.603818 5_3:-14250237 None:intergenic
AAATCAAGGTAGGAAAGTGA+AGG 0.604919 5_3:+14251807 Msa0800730:CDS
GCTCAGAGGAAACTTGGTTG+GGG 0.605080 5_3:+14248670 Msa0800730:CDS
AACAAAACACAAGACCCAGA+TGG 0.607452 5_3:-14248500 None:intergenic
AATTGGTGGAGCTCAATCCA+AGG 0.608972 5_3:+14251511 Msa0800730:CDS
ATGGTATCCACCTTTCCGAT+AGG 0.609356 5_3:-14248605 None:intergenic
AGTCTAGTAGAAATATCGAC+GGG 0.609550 5_3:+14250461 Msa0800730:CDS
AAATGGGCAGCACCATTGCA+TGG 0.610699 5_3:+14250075 Msa0800730:CDS
AGAGTCGCTGATCAATTCGC+GGG 0.611441 5_3:+14248634 Msa0800730:CDS
TTGTTTGATTGAGGCAAATG+CGG 0.618583 5_3:+14251932 Msa0800730:three_prime_UTR
TTTGAGTCCTATCGGAAAGG+TGG 0.621569 5_3:+14248598 Msa0800730:CDS
AAGTCTAGTAGAAATATCGA+CGG 0.621748 5_3:+14250460 Msa0800730:CDS
AAAGAACGTTGATCTCGTGA+AGG 0.622147 5_3:-14249976 None:intergenic
GGGAGTGTACTCACCTTCCG+GGG 0.625406 5_3:-14251420 None:intergenic
AAGAACGTTGATCTCGTGAA+GGG 0.630667 5_3:-14249975 None:intergenic
AGTATCATAAGCAAGCCAAA+CGG 0.632450 5_3:-14248704 None:intergenic
GAAACTCAAGGACCATGCAA+TGG 0.636117 5_3:-14250087 None:intergenic
CCCAACTTTAGAACGGACTG+AGG 0.637641 5_3:+14250318 Msa0800730:CDS
AGCAACCTTCAAATCAAGGT+AGG 0.638879 5_3:+14251797 Msa0800730:CDS
GACTCTCCCCAACTTTAGAA+CGG 0.639593 5_3:+14250311 Msa0800730:CDS
GTACAATACGTGTTCTGACA+AGG 0.640270 5_3:+14251829 Msa0800730:three_prime_UTR
ATGTTATTTACACCCAAAGG+TGG 0.642360 5_3:+14250664 Msa0800730:CDS
CCGTTAGGTCGAAACAAAGT+CGG 0.644967 5_3:+14251878 Msa0800730:three_prime_UTR
ATCATAAGCAAGCCAAACGG+TGG 0.646324 5_3:-14248701 None:intergenic
CCTCGGAAAGATGCCCCGGA+AGG 0.647925 5_3:+14251407 Msa0800730:CDS
GGATTTGAGTCCTATCGGAA+AGG 0.650525 5_3:+14248595 Msa0800730:CDS
AGCTATCACCAAGAAACTCA+AGG 0.651636 5_3:-14250099 None:intergenic
GGATCGGAGGAAGATGATGA+GGG 0.654053 5_3:+14248574 Msa0800730:CDS
GCCTTGATGATGGAACTCCT+CGG 0.654637 5_3:+14251390 Msa0800730:CDS
ATTCCTCGTCTGTAGACATG+TGG 0.655799 5_3:+14250602 Msa0800730:CDS
GATCAGCGACTCTAACAGCA+TGG 0.659062 5_3:-14248624 None:intergenic
ATAAGAAGAACATACAGAGG+TGG 0.667158 5_3:-14248728 None:intergenic
AATGAGAAATGAATCTACTG+TGG 0.670154 5_3:+14251754 Msa0800730:CDS
CCAACTTTAGAACGGACTGA+GGG 0.670163 5_3:+14250319 Msa0800730:CDS
AGACTTCAGTATAACTTCAG+GGG 0.688658 5_3:-14250575 None:intergenic
ACTGAGGGAAACACAAACGG+TGG 0.700333 5_3:+14250334 Msa0800730:CDS
TGGTGGACAAGGTTATAGCG+AGG 0.709203 5_3:+14250684 Msa0800730:CDS
TCTCAAAATCCAGAAAAGTG+CGG 0.715435 5_3:+14249934 Msa0800730:CDS
GTGGGAGGTATATTGCTCAG+AGG 0.720598 5_3:+14248656 Msa0800730:CDS
AGACCACATGTCTACAGACG+AGG 0.723587 5_3:-14250605 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTAATTAATTTTGTGT+AGG - chr5_3:14248423-14248442 None:intergenic 10.0%
!! ATTTCAAAAATATTCTATAT+GGG + chr5_3:14249786-14249805 Msa0800730:intron 10.0%
!!! ATAATTTTAAAAATTATCAC+TGG - chr5_3:14249855-14249874 None:intergenic 10.0%
!!! CAAATAATATAAGTTTTTAT+AGG - chr5_3:14251323-14251342 None:intergenic 10.0%
!! AATCATGAAAAACAAAAAAT+AGG - chr5_3:14248773-14248792 None:intergenic 15.0%
!!! TTTTTTTGTTATTGAATGAA+TGG + chr5_3:14248918-14248937 Msa0800730:intron 15.0%
!! GATTTCAAAAATATTCTATA+TGG + chr5_3:14249785-14249804 Msa0800730:intron 15.0%
!! AAATTAGAAAAAGATATTAG+TGG - chr5_3:14249887-14249906 None:intergenic 15.0%
!!! ATTTGTAAATACATTTTGAT+TGG + chr5_3:14250181-14250200 Msa0800730:CDS 15.0%
!!! AAACTTATATTATTTGTTAC+TGG + chr5_3:14251327-14251346 Msa0800730:intron 15.0%
!!! CATTTCTAAAATAAATATTG+TGG + chr5_3:14251458-14251477 Msa0800730:intron 15.0%
!! ATTAAAAATACCCATTTCAT+TGG + chr5_3:14248434-14248453 Msa0800730:five_prime_UTR 20.0%
!!! TTTAAAAATTATCACTGGTT+GGG - chr5_3:14249850-14249869 None:intergenic 20.0%
!!! TTTTAAAAATTATCACTGGT+TGG - chr5_3:14249851-14249870 None:intergenic 20.0%
!!! TAAATACATTTTGATTGGTT+TGG + chr5_3:14250186-14250205 Msa0800730:CDS 20.0%
!! CATGATCATAAAAAGAATAA+AGG - chr5_3:14251239-14251258 None:intergenic 20.0%
!!! GATGTGAAGTATTTTGTTTT+TGG - chr5_3:14248390-14248409 None:intergenic 25.0%
!!! AAAGTTTTGATTTTTCCATC+TGG + chr5_3:14248485-14248504 Msa0800730:five_prime_UTR 25.0%
!!! AAGTTTTGATTTTTCCATCT+GGG + chr5_3:14248486-14248505 Msa0800730:five_prime_UTR 25.0%
! AATCTGATCAAAGAAAAAAG+TGG + chr5_3:14248527-14248546 Msa0800730:five_prime_UTR 25.0%
! ATCTGATCAAAGAAAAAAGT+GGG + chr5_3:14248528-14248547 Msa0800730:five_prime_UTR 25.0%
!! TTTTTCATGATTTTCACATG+TGG + chr5_3:14248781-14248800 Msa0800730:intron 25.0%
!!! TTGTTTGTTATGTTTTGTGT+AGG + chr5_3:14248849-14248868 Msa0800730:intron 25.0%
! CCAACAAAAAAAGGAATTAT+CGG - chr5_3:14249004-14249023 None:intergenic 25.0%
!!! ATTCCTTTTTTTGTTGGAAT+TGG + chr5_3:14249007-14249026 Msa0800730:intron 25.0%
! ATTCCAATTCCAACAAAAAA+AGG - chr5_3:14249013-14249032 None:intergenic 25.0%
! AATTGGAATAGCTGAAAATT+GGG + chr5_3:14249024-14249043 Msa0800730:intron 25.0%
! GACAAAAACAATGTAACATA+AGG - chr5_3:14249078-14249097 None:intergenic 25.0%
!!! TTTTTTTGCTGTCAAGATTT+AGG + chr5_3:14249235-14249254 Msa0800730:intron 25.0%
! ACGTTAGAAACAAATACATT+TGG + chr5_3:14249335-14249354 Msa0800730:intron 25.0%
! ATTTGGTAGACATATTAGAA+TGG + chr5_3:14249352-14249371 Msa0800730:intron 25.0%
! TTTGGTAGACATATTAGAAT+GGG + chr5_3:14249353-14249372 Msa0800730:intron 25.0%
! TATTATGTTTGACCTATGTT+TGG + chr5_3:14249401-14249420 Msa0800730:intron 25.0%
! TATTGGTGCAAATTAACAAA+TGG + chr5_3:14249538-14249557 Msa0800730:intron 25.0%
! ATTGGTGCAAATTAACAAAT+GGG + chr5_3:14249539-14249558 Msa0800730:intron 25.0%
!!! GACAATTGGTTTGTTTTATT+TGG + chr5_3:14249634-14249653 Msa0800730:intron 25.0%
! CTTCATTAACTTAATCAAGA+TGG + chr5_3:14249681-14249700 Msa0800730:intron 25.0%
! GCTTAAAGTTATCAATCAAT+TGG - chr5_3:14250045-14250064 None:intergenic 25.0%
! ATCTCTCTAACTTTATTCAA+TGG - chr5_3:14250163-14250182 None:intergenic 25.0%
!! GAAAATAGAAGAATGTTTTC+AGG - chr5_3:14250256-14250275 None:intergenic 25.0%
!!! TTACAAGTCTTATTGAGAAA+AGG + chr5_3:14250359-14250378 Msa0800730:CDS 25.0%
!!! ATTTTTCTAGTAAACTGTTG+TGG + chr5_3:14250720-14250739 Msa0800730:intron 25.0%
! GGTTTAATATGTGAAAAAAC+TGG + chr5_3:14250783-14250802 Msa0800730:intron 25.0%
! ACCATTAATAAAAAGAGACA+CGG + chr5_3:14250824-14250843 Msa0800730:intron 25.0%
! CATAAAAACTCTATCGTTTA+GGG - chr5_3:14251119-14251138 None:intergenic 25.0%
! TCATAAAAACTCTATCGTTT+AGG - chr5_3:14251120-14251139 None:intergenic 25.0%
! GAAACTTTGAATTTCATTCT+CGG - chr5_3:14251150-14251169 None:intergenic 25.0%
! CTTAAATTGTTGTATGCAAA+AGG + chr5_3:14251196-14251215 Msa0800730:intron 25.0%
!! TCTTTTTATGATCATGTTGA+AGG + chr5_3:14251243-14251262 Msa0800730:intron 25.0%
!! CTTTTTATGATCATGTTGAA+GGG + chr5_3:14251244-14251263 Msa0800730:intron 25.0%
! GATTCATTTCTCATTTCATT+TGG - chr5_3:14251749-14251768 None:intergenic 25.0%
!!! ATTTTGACTATGTCAAAACA+CGG - chr5_3:14251981-14252000 None:intergenic 25.0%
! TACAAAGAATGTCACTAAAT+TGG - chr5_3:14252058-14252077 None:intergenic 25.0%
! TTTAGTGACATTCTTTGTAT+TGG + chr5_3:14252059-14252078 Msa0800730:three_prime_UTR 25.0%
! ATTTTGTGTAGGAAATTGCT+TGG - chr5_3:14248412-14248431 None:intergenic 30.0%
TTGAGAATCACCAATGAAAT+GGG - chr5_3:14248447-14248466 None:intergenic 30.0%
TTTGAGAATCACCAATGAAA+TGG - chr5_3:14248448-14248467 None:intergenic 30.0%
AGTATAAGAAGAACATACAG+AGG - chr5_3:14248734-14248753 None:intergenic 30.0%
TAGGTTTACTAGCTCAAATT+TGG + chr5_3:14248868-14248887 Msa0800730:intron 30.0%
AACACACATTGAACAAAAGA+AGG - chr5_3:14248968-14248987 None:intergenic 30.0%
!!! CCGATAATTCCTTTTTTTGT+TGG + chr5_3:14249001-14249020 Msa0800730:intron 30.0%
GAATTGGAATAGCTGAAAAT+TGG + chr5_3:14249023-14249042 Msa0800730:intron 30.0%
AAACAATGTAACATAAGGTC+AGG - chr5_3:14249073-14249092 None:intergenic 30.0%
CATGTACCATTTATGTTTGT+TGG + chr5_3:14249150-14249169 Msa0800730:intron 30.0%
GTACTTCCAACAAACATAAA+TGG - chr5_3:14249159-14249178 None:intergenic 30.0%
! TTTATGTTTGTTGGAAGTAC+CGG + chr5_3:14249159-14249178 Msa0800730:intron 30.0%
AAGACAATTATTCTCATTCC+CGG - chr5_3:14249181-14249200 None:intergenic 30.0%
TGAGAATAATTGTCTTTCTC+AGG + chr5_3:14249185-14249204 Msa0800730:intron 30.0%
!! AAGATTTAGGAGCCATTTTA+TGG + chr5_3:14249248-14249267 Msa0800730:intron 30.0%
ATTTATGGTATCACAAGTCT+TGG - chr5_3:14249276-14249295 None:intergenic 30.0%
AAGACTTGTGATACCATAAA+TGG + chr5_3:14249275-14249294 Msa0800730:intron 30.0%
ATGGGATGAAACATAATACT+AGG + chr5_3:14249371-14249390 Msa0800730:intron 30.0%
TGGGATGAAACATAATACTA+GGG + chr5_3:14249372-14249391 Msa0800730:intron 30.0%
ATTGAAGTGTATCCAAACAT+AGG - chr5_3:14249416-14249435 None:intergenic 30.0%
TTGTAGCTTCTCAAAAATCA+CGG - chr5_3:14249461-14249480 None:intergenic 30.0%
!!! AGGAGACTGTTGTTTTAATA+TGG - chr5_3:14249709-14249728 None:intergenic 30.0%
ATATTAAAACAACAGTCTCC+TGG + chr5_3:14249708-14249727 Msa0800730:intron 30.0%
GGATATTAATCTTAGCAACA+GGG - chr5_3:14249734-14249753 None:intergenic 30.0%
TGGATATTAATCTTAGCAAC+AGG - chr5_3:14249735-14249754 None:intergenic 30.0%
CAACAAACTTTGAATTCGAT+GGG - chr5_3:14250021-14250040 None:intergenic 30.0%
ACAACAAACTTTGAATTCGA+TGG - chr5_3:14250022-14250041 None:intergenic 30.0%
! ATTGATAACTTTAAGCACAC+AGG + chr5_3:14250049-14250068 Msa0800730:CDS 30.0%
ATCAAATACAGCCATTACAA+AGG + chr5_3:14250133-14250152 Msa0800730:CDS 30.0%
AAGTCTAGTAGAAATATCGA+CGG + chr5_3:14250460-14250479 Msa0800730:CDS 30.0%
TGTAAATAACATATCTCCAG+TGG - chr5_3:14250656-14250675 None:intergenic 30.0%
! GATATGTTATTTACACCCAA+AGG + chr5_3:14250661-14250680 Msa0800730:CDS 30.0%
CCATTAATAAAAAGAGACAC+GGG + chr5_3:14250825-14250844 Msa0800730:intron 30.0%
GTACTAAATAATATGTGTCC+TGG + chr5_3:14251064-14251083 Msa0800730:intron 30.0%
ATGAGAAATTGTTCAAAACC+AGG - chr5_3:14251085-14251104 None:intergenic 30.0%
TAGGTTCTATAGAAATAGCA+TGG - chr5_3:14251304-14251323 None:intergenic 30.0%
AATGAGAAATGAATCTACTG+TGG + chr5_3:14251754-14251773 Msa0800730:CDS 30.0%
AAATGAATCTACTGTGGAAA+AGG + chr5_3:14251760-14251779 Msa0800730:CDS 30.0%
TTTACCACAATCAAAGAATC+TGG + chr5_3:14251854-14251873 Msa0800730:three_prime_UTR 30.0%
TCAAACCATCAGATTAAGAT+CGG - chr5_3:14251911-14251930 None:intergenic 30.0%
TGGTTTGAATTGTTTGATTG+AGG + chr5_3:14251923-14251942 Msa0800730:three_prime_UTR 30.0%
! ATGTCTTGTTCTTCTTCATC+AGG + chr5_3:14248553-14248572 Msa0800730:CDS 35.0%
TTGTTCTTCTTCATCAGGAT+CGG + chr5_3:14248558-14248577 Msa0800730:CDS 35.0%
TATATTGCTCAGAGGAAACT+TGG + chr5_3:14248664-14248683 Msa0800730:CDS 35.0%
AGTATCATAAGCAAGCCAAA+CGG - chr5_3:14248707-14248726 None:intergenic 35.0%
ATAAGAAGAACATACAGAGG+TGG - chr5_3:14248731-14248750 None:intergenic 35.0%
GAATAGCTGAAAATTGGGAA+TGG + chr5_3:14249029-14249048 Msa0800730:intron 35.0%
!! TTATGTTTGTTGGAAGTACC+GGG + chr5_3:14249160-14249179 Msa0800730:intron 35.0%
CAAGTCTTGGATCCATAAAA+TGG - chr5_3:14249263-14249282 None:intergenic 35.0%
!! ACATTAACTCGTGCCATTTA+TGG - chr5_3:14249291-14249310 None:intergenic 35.0%
TAAATGGCACGAGTTAATGT+AGG + chr5_3:14249291-14249310 Msa0800730:intron 35.0%
GGGATGAAACATAATACTAG+GGG + chr5_3:14249373-14249392 Msa0800730:intron 35.0%
GGATGAAACATAATACTAGG+GGG + chr5_3:14249374-14249393 Msa0800730:intron 35.0%
GATGAAACATAATACTAGGG+GGG + chr5_3:14249375-14249394 Msa0800730:intron 35.0%
!! TACAACTTGTAGCTTTGAAG+TGG + chr5_3:14249476-14249495 Msa0800730:intron 35.0%
! GAGTGAAAGTGTAAAACAAG+TGG + chr5_3:14249567-14249586 Msa0800730:intron 35.0%
!! TTGTCCTGTTTTGTTCTCTT+TGG - chr5_3:14249619-14249638 None:intergenic 35.0%
AGAGAACAAAACAGGACAAT+TGG + chr5_3:14249620-14249639 Msa0800730:intron 35.0%
ACGTGAAGAAAAGATGAACT+TGG - chr5_3:14249755-14249774 None:intergenic 35.0%
TCTCAAAATCCAGAAAAGTG+CGG + chr5_3:14249934-14249953 Msa0800730:CDS 35.0%
TTCTTTCAACCATTGCTGAT+GGG + chr5_3:14249993-14250012 Msa0800730:CDS 35.0%
TCAATGGAAGACCTTTGTAA+TGG - chr5_3:14250147-14250166 None:intergenic 35.0%
GATTACTTGCATAGTGAACT+TGG + chr5_3:14250208-14250227 Msa0800730:CDS 35.0%
GGAAGAACAACTTCAATTGA+AGG + chr5_3:14250421-14250440 Msa0800730:CDS 35.0%
ACAACTTCAATTGAAGGAAG+AGG + chr5_3:14250427-14250446 Msa0800730:CDS 35.0%
AGTCTAGTAGAAATATCGAC+GGG + chr5_3:14250461-14250480 Msa0800730:CDS 35.0%
!!! AGATGCAAGATTGTCGATTT+TGG + chr5_3:14250493-14250512 Msa0800730:CDS 35.0%
AGACTTCAGTATAACTTCAG+GGG - chr5_3:14250578-14250597 None:intergenic 35.0%
CAGACTTCAGTATAACTTCA+GGG - chr5_3:14250579-14250598 None:intergenic 35.0%
! ATGTTATTTACACCCAAAGG+TGG + chr5_3:14250664-14250683 Msa0800730:CDS 35.0%
! TATGGTTAACGAGTTTTCAG+AGG + chr5_3:14250762-14250781 Msa0800730:intron 35.0%
! CCCGTGTCTCTTTTTATTAA+TGG - chr5_3:14250828-14250847 None:intergenic 35.0%
!! TTGATAGTGTGAAAAGTGTC+AGG + chr5_3:14250973-14250992 Msa0800730:intron 35.0%
!! TGATAGTGTGAAAAGTGTCA+GGG + chr5_3:14250974-14250993 Msa0800730:intron 35.0%
! ATTCTTTTATAGCCCATGTG+AGG + chr5_3:14251038-14251057 Msa0800730:intron 35.0%
! TTCTTTTATAGCCCATGTGA+GGG + chr5_3:14251039-14251058 Msa0800730:intron 35.0%
TGATCATGTTGAAGGGAAAA+TGG + chr5_3:14251251-14251270 Msa0800730:intron 35.0%
AAATGAAACATGCTGACAGT+GGG - chr5_3:14251443-14251462 None:intergenic 35.0%
AATCCAAGGATTACTTTGAC+CGG + chr5_3:14251525-14251544 Msa0800730:CDS 35.0%
GTGATCTAAAAAGGATTCGT+AGG + chr5_3:14251552-14251571 Msa0800730:CDS 35.0%
TCAATCAGCAATTTGTCAAG+TGG - chr5_3:14251590-14251609 None:intergenic 35.0%
ACTGTGGAAAAGGTTAATGT+TGG + chr5_3:14251770-14251789 Msa0800730:CDS 35.0%
TATGAGCAACCTTCAAATCA+AGG + chr5_3:14251793-14251812 Msa0800730:CDS 35.0%
! ACTTTCCTACCTTGATTTGA+AGG - chr5_3:14251805-14251824 None:intergenic 35.0%
AAATCAAGGTAGGAAAGTGA+AGG + chr5_3:14251807-14251826 Msa0800730:CDS 35.0%
TTGTTTGATTGAGGCAAATG+CGG + chr5_3:14251932-14251951 Msa0800730:three_prime_UTR 35.0%
AACAAAACACAAGACCCAGA+TGG - chr5_3:14248503-14248522 None:intergenic 40.0%
!! ATCTGGGTCTTGTGTTTTGT+TGG + chr5_3:14248502-14248521 Msa0800730:five_prime_UTR 40.0%
ATGAGGGATTTGAGTCCTAT+CGG + chr5_3:14248590-14248609 Msa0800730:CDS 40.0%
!! GTCAGGTTTTGTGAATTGTG+AGG - chr5_3:14249056-14249075 None:intergenic 40.0%
!! CAATAGCCTGTTTGTTTCTG+TGG - chr5_3:14249523-14249542 None:intergenic 40.0%
CACAGAAACAAACAGGCTAT+TGG + chr5_3:14249521-14249540 Msa0800730:intron 40.0%
! CTTTGGTTCGATATTCTCAG+TGG - chr5_3:14249602-14249621 None:intergenic 40.0%
CGAACCAAAGAGAACAAAAC+AGG + chr5_3:14249612-14249631 Msa0800730:intron 40.0%
AAGAACGTTGATCTCGTGAA+GGG - chr5_3:14249978-14249997 None:intergenic 40.0%
AAAGAACGTTGATCTCGTGA+AGG - chr5_3:14249979-14249998 None:intergenic 40.0%
GTTCTTTCAACCATTGCTGA+TGG + chr5_3:14249992-14250011 Msa0800730:CDS 40.0%
TCTTTCAACCATTGCTGATG+GGG + chr5_3:14249994-14250013 Msa0800730:CDS 40.0%
TTTAAGCACACAGGTCCAAA+TGG + chr5_3:14250058-14250077 Msa0800730:CDS 40.0%
TTAAGCACACAGGTCCAAAT+GGG + chr5_3:14250059-14250078 Msa0800730:CDS 40.0%
AGCTATCACCAAGAAACTCA+AGG - chr5_3:14250102-14250121 None:intergenic 40.0%
!! TTTCAGGCTTTAAGTCTGTG+TGG - chr5_3:14250240-14250259 None:intergenic 40.0%
GATCTAAAAGGGTCTTTGGA+AGG - chr5_3:14250289-14250308 None:intergenic 40.0%
! TCCAAAGACCCTTTTAGATC+CGG + chr5_3:14250289-14250308 Msa0800730:CDS 40.0%
GCGTGCAGTTGCTAAAATAT+CGG + chr5_3:14250399-14250418 Msa0800730:CDS 40.0%
CGTGCAGTTGCTAAAATATC+GGG + chr5_3:14250400-14250419 Msa0800730:CDS 40.0%
!! TCGATTTTGGAAATGCGTGT+TGG + chr5_3:14250506-14250525 Msa0800730:CDS 40.0%
!! CGATTTTGGAAATGCGTGTT+GGG + chr5_3:14250507-14250526 Msa0800730:CDS 40.0%
CCAGACTTCAGTATAACTTC+AGG - chr5_3:14250580-14250599 None:intergenic 40.0%
CCTGAAGTTATACTGAAGTC+TGG + chr5_3:14250577-14250596 Msa0800730:CDS 40.0%
TTATTTACACCCAAAGGTGG+TGG + chr5_3:14250667-14250686 Msa0800730:CDS 40.0%
ATTTAGTACCTCCCTCACAT+GGG - chr5_3:14251053-14251072 None:intergenic 40.0%
TATTTAGTACCTCCCTCACA+TGG - chr5_3:14251054-14251073 None:intergenic 40.0%
!! AATGTCCTTGTGCTGATTTC+AGG + chr5_3:14251359-14251378 Msa0800730:intron 40.0%
ATGATCCTGAAATCAGCACA+AGG - chr5_3:14251367-14251386 None:intergenic 40.0%
GAAATGAAACATGCTGACAG+TGG - chr5_3:14251444-14251463 None:intergenic 40.0%
TGTGGCATATCTAATGCTTG+TGG + chr5_3:14251476-14251495 Msa0800730:intron 40.0%
! TGTGGATTGCAGATTGCAAT+TGG + chr5_3:14251494-14251513 Msa0800730:intron 40.0%
! TCCTTTTTAGATCACCATGC+CGG - chr5_3:14251547-14251566 None:intergenic 40.0%
TCTGGCGCAAAATCAAAAAG+TGG - chr5_3:14251665-14251684 None:intergenic 40.0%
AGCAACCTTCAAATCAAGGT+AGG + chr5_3:14251797-14251816 Msa0800730:CDS 40.0%
GTACAATACGTGTTCTGACA+AGG + chr5_3:14251829-14251848 Msa0800730:three_prime_UTR 40.0%
ATCAAAGAATCTGGACCGTT+AGG + chr5_3:14251863-14251882 Msa0800730:three_prime_UTR 40.0%
GAGATCCGATCTTAATCTGA+TGG + chr5_3:14251903-14251922 Msa0800730:three_prime_UTR 40.0%
TGTTTGATTGAGGCAAATGC+GGG + chr5_3:14251933-14251952 Msa0800730:three_prime_UTR 40.0%
TTCTTCTTCATCAGGATCGG+AGG + chr5_3:14248561-14248580 Msa0800730:CDS 45.0%
GGATTTGAGTCCTATCGGAA+AGG + chr5_3:14248595-14248614 Msa0800730:CDS 45.0%
TTTGAGTCCTATCGGAAAGG+TGG + chr5_3:14248598-14248617 Msa0800730:CDS 45.0%
ATGGTATCCACCTTTCCGAT+AGG - chr5_3:14248608-14248627 None:intergenic 45.0%
TAGAGTCGCTGATCAATTCG+CGG + chr5_3:14248633-14248652 Msa0800730:CDS 45.0%
TTGCTCAGAGGAAACTTGGT+TGG + chr5_3:14248668-14248687 Msa0800730:CDS 45.0%
TGCTCAGAGGAAACTTGGTT+GGG + chr5_3:14248669-14248688 Msa0800730:CDS 45.0%
ATCATAAGCAAGCCAAACGG+TGG - chr5_3:14248704-14248723 None:intergenic 45.0%
!! AGCCTGTTTGTTTCTGTGGT+GGG - chr5_3:14249519-14249538 None:intergenic 45.0%
!! TAGCCTGTTTGTTTCTGTGG+TGG - chr5_3:14249520-14249539 None:intergenic 45.0%
TTAATCTTAGCAACAGGGCC+AGG - chr5_3:14249729-14249748 None:intergenic 45.0%
GAAACTCAAGGACCATGCAA+TGG - chr5_3:14250090-14250109 None:intergenic 45.0%
TGCATGGTCCTTGAGTTTCT+TGG + chr5_3:14250091-14250110 Msa0800730:CDS 45.0%
TCCGGATCTAAAAGGGTCTT+TGG - chr5_3:14250293-14250312 None:intergenic 45.0%
!! TTCTAAAGTTGGGGAGAGTC+CGG - chr5_3:14250311-14250330 None:intergenic 45.0%
! GACTCTCCCCAACTTTAGAA+CGG + chr5_3:14250311-14250330 Msa0800730:CDS 45.0%
!! CTCAGTCCGTTCTAAAGTTG+GGG - chr5_3:14250320-14250339 None:intergenic 45.0%
!! CCTCAGTCCGTTCTAAAGTT+GGG - chr5_3:14250321-14250340 None:intergenic 45.0%
!! CCAACTTTAGAACGGACTGA+GGG + chr5_3:14250319-14250338 Msa0800730:CDS 45.0%
ATTCCTCGTCTGTAGACATG+TGG + chr5_3:14250602-14250621 Msa0800730:CDS 45.0%
TAACCTTGTCCACCACCTTT+GGG - chr5_3:14250679-14250698 None:intergenic 45.0%
ATAACCTTGTCCACCACCTT+TGG - chr5_3:14250680-14250699 None:intergenic 45.0%
ACAAGGTTATAGCGAGGATG+AGG + chr5_3:14250690-14250709 Msa0800730:CDS 45.0%
! TTTTATAGCCCATGTGAGGG+AGG + chr5_3:14251042-14251061 Msa0800730:intron 45.0%
GGATCATCTTGCCTTGATGA+TGG + chr5_3:14251380-14251399 Msa0800730:intron 45.0%
GGATTGCAGATTGCAATTGG+TGG + chr5_3:14251497-14251516 Msa0800730:intron 45.0%
AATTGGTGGAGCTCAATCCA+AGG + chr5_3:14251511-14251530 Msa0800730:CDS 45.0%
ATGCCGGTCAAAGTAATCCT+TGG - chr5_3:14251531-14251550 None:intergenic 45.0%
AAGGATTACTTTGACCGGCA+TGG + chr5_3:14251530-14251549 Msa0800730:CDS 45.0%
ACCGGCATGGTGATCTAAAA+AGG + chr5_3:14251543-14251562 Msa0800730:CDS 45.0%
CAGAAAAACGACCAACTGCA+CGG + chr5_3:14251681-14251700 Msa0800730:CDS 45.0%
ATTCATTGCAGTTCAGCCAG+GGG - chr5_3:14251721-14251740 None:intergenic 45.0%
GATTCATTGCAGTTCAGCCA+GGG - chr5_3:14251722-14251741 None:intergenic 45.0%
TGATTCATTGCAGTTCAGCC+AGG - chr5_3:14251723-14251742 None:intergenic 45.0%
CGGTCCAGATTCTTTGATTG+TGG - chr5_3:14251861-14251880 None:intergenic 45.0%
! CCGACTTTGTTTCGACCTAA+CGG - chr5_3:14251881-14251900 None:intergenic 45.0%
CCGTTAGGTCGAAACAAAGT+CGG + chr5_3:14251878-14251897 Msa0800730:three_prime_UTR 45.0%
!!! TTAAATTTGATTTAATAATA+TGG + chr5_3:14250744-14250763 Msa0800730:intron 5.0%
AGGATCGGAGGAAGATGATG+AGG + chr5_3:14248573-14248592 Msa0800730:CDS 50.0%
GGATCGGAGGAAGATGATGA+GGG + chr5_3:14248574-14248593 Msa0800730:CDS 50.0%
GATCAGCGACTCTAACAGCA+TGG - chr5_3:14248627-14248646 None:intergenic 50.0%
AGAGTCGCTGATCAATTCGC+GGG + chr5_3:14248634-14248653 Msa0800730:CDS 50.0%
! GTGGGAGGTATATTGCTCAG+AGG + chr5_3:14248656-14248675 Msa0800730:CDS 50.0%
GCTCAGAGGAAACTTGGTTG+GGG + chr5_3:14248670-14248689 Msa0800730:CDS 50.0%
TACCACATCCCAACGCAAGT+TGG + chr5_3:14249435-14249454 Msa0800730:intron 50.0%
AATCACGGCCAACTTGCGTT+GGG - chr5_3:14249446-14249465 None:intergenic 50.0%
AAATCACGGCCAACTTGCGT+TGG - chr5_3:14249447-14249466 None:intergenic 50.0%
!! CTGTTTGTTTCTGTGGTGGG+AGG - chr5_3:14249516-14249535 None:intergenic 50.0%
CTCCCACCACAGAAACAAAC+AGG + chr5_3:14249514-14249533 Msa0800730:intron 50.0%
AAGGGCAGCCTGAACAAACT+CGG - chr5_3:14249960-14249979 None:intergenic 50.0%
!! ATGCAATGGTGCTGCCCATT+TGG - chr5_3:14250076-14250095 None:intergenic 50.0%
AAATGGGCAGCACCATTGCA+TGG + chr5_3:14250075-14250094 Msa0800730:CDS 50.0%
GGGAGAGTCCGGATCTAAAA+GGG - chr5_3:14250300-14250319 None:intergenic 50.0%
!! CCCAACTTTAGAACGGACTG+AGG + chr5_3:14250318-14250337 Msa0800730:CDS 50.0%
!! CCCTCAGTCCGTTCTAAAGT+TGG - chr5_3:14250322-14250341 None:intergenic 50.0%
CGGACTGAGGGAAACACAAA+CGG + chr5_3:14250331-14250350 Msa0800730:CDS 50.0%
ACTGAGGGAAACACAAACGG+TGG + chr5_3:14250334-14250353 Msa0800730:CDS 50.0%
AGACCACATGTCTACAGACG+AGG - chr5_3:14250608-14250627 None:intergenic 50.0%
ATTGCTTTCGAGCTTGCCAC+TGG + chr5_3:14250637-14250656 Msa0800730:CDS 50.0%
! TGGTGGACAAGGTTATAGCG+AGG + chr5_3:14250684-14250703 Msa0800730:CDS 50.0%
!! GCCTTGATGATGGAACTCCT+CGG + chr5_3:14251390-14251409 Msa0800730:CDS 50.0%
TCCGAGGAGTTCCATCATCA+AGG - chr5_3:14251394-14251413 None:intergenic 50.0%
!!! CGTGCAGTTGGTCGTTTTTC+TGG - chr5_3:14251683-14251702 None:intergenic 50.0%
TCGCTGATCAATTCGCGGGT+GGG + chr5_3:14248638-14248657 Msa0800730:CDS 55.0%
GGGGTCAATTCTCCACCGTT+TGG + chr5_3:14248689-14248708 Msa0800730:CDS 55.0%
! CAAACTCGGCCGCACTTTTC+TGG - chr5_3:14249946-14249965 None:intergenic 55.0%
! AAGTGCGGCCGAGTTTGTTC+AGG + chr5_3:14249949-14249968 Msa0800730:CDS 55.0%
GGGGAGAGTCCGGATCTAAA+AGG - chr5_3:14250301-14250320 None:intergenic 55.0%
!! ACACCCAAAGGTGGTGGACA+AGG + chr5_3:14250673-14250692 Msa0800730:CDS 55.0%
AACTCCTCGGAAAGATGCCC+CGG + chr5_3:14251403-14251422 Msa0800730:CDS 55.0%
! TGGGAGTGTACTCACCTTCC+GGG - chr5_3:14251424-14251443 None:intergenic 55.0%
! GTGGGAGTGTACTCACCTTC+CGG - chr5_3:14251425-14251444 None:intergenic 55.0%
! TGCAGGTATTGCCGTGCAGT+TGG - chr5_3:14251695-14251714 None:intergenic 55.0%
CAAATGCGGGTCTGACTGCA+AGG + chr5_3:14251946-14251965 Msa0800730:three_prime_UTR 55.0%
GTCGCTGATCAATTCGCGGG+TGG + chr5_3:14248637-14248656 Msa0800730:CDS 60.0%
CTGATCAATTCGCGGGTGGG+AGG + chr5_3:14248641-14248660 Msa0800730:CDS 60.0%
GGCCAACTTGCGTTGGGATG+TGG - chr5_3:14249440-14249459 None:intergenic 60.0%
CGATGGGTCCCCATCAGCAA+TGG - chr5_3:14250005-14250024 None:intergenic 60.0%
! GGGAGTGTACTCACCTTCCG+GGG - chr5_3:14251423-14251442 None:intergenic 60.0%
GGCAATACCTGCAACACCCC+TGG + chr5_3:14251702-14251721 Msa0800730:CDS 60.0%
!! AGTTCAGCCAGGGGTGTTGC+AGG - chr5_3:14251712-14251731 None:intergenic 60.0%
! CCTTCCGGGGCATCTTTCCG+AGG - chr5_3:14251410-14251429 None:intergenic 65.0%
CCTCGGAAAGATGCCCCGGA+AGG + chr5_3:14251407-14251426 Msa0800730:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 14248345 14252216 14248345 ID=Msa0800730;Name=Msa0800730
chr5_3 mRNA 14248345 14252216 14248345 ID=Msa0800730-mRNA-1;Parent=Msa0800730;Name=Msa0800730-mRNA-1;_AED=0.02;_eAED=0.02;_QI=208|1|1|1|1|1|4|390|446
chr5_3 exon 14248345 14248735 14248345 ID=Msa0800730-mRNA-1:exon:5923;Parent=Msa0800730-mRNA-1
chr5_3 exon 14249923 14250711 14249923 ID=Msa0800730-mRNA-1:exon:5924;Parent=Msa0800730-mRNA-1
chr5_3 exon 14251381 14251428 14251381 ID=Msa0800730-mRNA-1:exon:5925;Parent=Msa0800730-mRNA-1
chr5_3 exon 14251506 14252216 14251506 ID=Msa0800730-mRNA-1:exon:5926;Parent=Msa0800730-mRNA-1
chr5_3 five_prime_UTR 14248345 14248552 14248345 ID=Msa0800730-mRNA-1:five_prime_utr;Parent=Msa0800730-mRNA-1
chr5_3 CDS 14248553 14248735 14248553 ID=Msa0800730-mRNA-1:cds;Parent=Msa0800730-mRNA-1
chr5_3 CDS 14249923 14250711 14249923 ID=Msa0800730-mRNA-1:cds;Parent=Msa0800730-mRNA-1
chr5_3 CDS 14251381 14251428 14251381 ID=Msa0800730-mRNA-1:cds;Parent=Msa0800730-mRNA-1
chr5_3 CDS 14251506 14251826 14251506 ID=Msa0800730-mRNA-1:cds;Parent=Msa0800730-mRNA-1
chr5_3 three_prime_UTR 14251827 14252216 14251827 ID=Msa0800730-mRNA-1:three_prime_utr;Parent=Msa0800730-mRNA-1
Gene Sequence

>Msa0800730

ATGTCTTGTTCTTCTTCATCAGGATCGGAGGAAGATGATGAGGGATTTGAGTCCTATCGGAAAGGTGGATACCATGCTGTTAGAGTCGCTGATCAATTCGCGGGTGGGAGGTATATTGCTCAGAGGAAACTTGGTTGGGGTCAATTCTCCACCGTTTGGCTTGCTTATGATACTACCACCTCTTCATACGTTGCTCTCAAAATCCAGAAAAGTGCGGCCGAGTTTGTTCAGGCTGCCCTTCACGAGATCAACGTTCTTTCAACCATTGCTGATGGGGACCCATCGAATTCAAAGTTTGTTGTCCAATTGATTGATAACTTTAAGCACACAGGTCCAAATGGGCAGCACCATTGCATGGTCCTTGAGTTTCTTGGTGATAGCTTGCTTCGTTTGATCAAATACAGCCATTACAAAGGTCTTCCATTGAATAAAGTTAGAGAGATTTGTAAATACATTTTGATTGGTTTGGATTACTTGCATAGTGAACTTGGTATAATCCACACAGACTTAAAGCCTGAAAACATTCTTCTATTTTCAACTATTGATCCTTCCAAAGACCCTTTTAGATCCGGACTCTCCCCAACTTTAGAACGGACTGAGGGAAACACAAACGGTGGACTTACAAGTCTTATTGAGAAAAGGCTGAAGAGAAGAGCAAAGCGTGCAGTTGCTAAAATATCGGGAAGAACAACTTCAATTGAAGGAAGAGGAGAAGCTGCAAAGTCTAGTAGAAATATCGACGGGATTGATGTGAGATGCAAGATTGTCGATTTTGGAAATGCGTGTTGGGCTGATAACAAGTTTGCAGAAGAAATACAGACAAGACAATATAGAGCCCCTGAAGTTATACTGAAGTCTGGTTATTCCTCGTCTGTAGACATGTGGTCTTTTGCTTGCATTGCTTTCGAGCTTGCCACTGGAGATATGTTATTTACACCCAAAGGTGGTGGACAAGGTTATAGCGAGGATGAGGATCATCTTGCCTTGATGATGGAACTCCTCGGAAAGATGCCCCGGAAGATTGCAATTGGTGGAGCTCAATCCAAGGATTACTTTGACCGGCATGGTGATCTAAAAAGGATTCGTAGGCTAAAATTTTGTCCACTTGACAAATTGCTGATTGATAGATATAAATTTTCAGCGAATGATGCTCAAGAGTTTTCAGAATTTCTTTTGCCACTTTTTGATTTTGCGCCAGAAAAACGACCAACTGCACGGCAATACCTGCAACACCCCTGGCTGAACTGCAATGAATCAGCGCCAAATGAAATGAGAAATGAATCTACTGTGGAAAAGGTTAATGTTGGTATGAGCAACCTTCAAATCAAGGTAGGAAAGTGA
Protein sequence

>Msa0800730

MSCSSSSGSEEDDEGFESYRKGGYHAVRVADQFAGGRYIAQRKLGWGQFSTVWLAYDTTTSSYVALKIQKSAAEFVQAALHEINVLSTIADGDPSNSKFVVQLIDNFKHTGPNGQHHCMVLEFLGDSLLRLIKYSHYKGLPLNKVREICKYILIGLDYLHSELGIIHTDLKPENILLFSTIDPSKDPFRSGLSPTLERTEGNTNGGLTSLIEKRLKRRAKRAVAKISGRTTSIEGRGEAAKSSRNIDGIDVRCKIVDFGNACWADNKFAEEIQTRQYRAPEVILKSGYSSSVDMWSFACIAFELATGDMLFTPKGGGQGYSEDEDHLALMMELLGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFCPLDKLLIDRYKFSANDAQEFSEFLLPLFDFAPEKRPTARQYLQHPWLNCNESAPNEMRNESTVEKVNVGMSNLQIKVGK*