AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0838970

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0838970 MtrunA17_Chr5g0407121 98.655 446 6 0 1 446 1 446 0.0 919
Msa0838970 MtrunA17_Chr8g0370321 82.063 446 76 2 1 446 1 442 0.0 739
Msa0838970 MtrunA17_Chr1g0179611 52.854 473 163 6 2 415 8 479 2.04e-174 499
Msa0838970 MtrunA17_Chr2g0320631 48.450 516 186 5 6 442 8 522 1.01e-169 487
Msa0838970 MtrunA17_Chr4g0027671 51.496 468 162 5 12 415 13 479 3.67e-169 486
Msa0838970 MtrunA17_Chr3g0139371 31.525 387 195 10 37 414 73 398 1.61e-44 160
Msa0838970 MtrunA17_Chr3g0116701 27.970 404 219 10 21 414 78 419 1.36e-37 142
Msa0838970 MtrunA17_Chr4g0058241 28.429 401 215 11 21 411 82 420 2.71e-37 141
Msa0838970 MtrunA17_Chr3g0123491 27.873 409 217 12 21 415 77 421 1.27e-33 130
Msa0838970 MtrunA17_Chr5g0437131 24.495 396 205 11 29 414 394 705 4.41e-24 105
Msa0838970 MtrunA17_Chr8g0369241 40.000 145 81 3 37 180 138 277 3.10e-22 100
Msa0838970 MtrunA17_Chr8g0369241 39.450 109 58 3 254 361 285 386 5.01e-14 74.7
Msa0838970 MtrunA17_Chr6g0480541 31.953 169 100 5 252 414 1041 1200 2.67e-20 94.4
Msa0838970 MtrunA17_Chr6g0480541 32.544 169 101 5 15 179 879 1038 1.87e-14 75.9
Msa0838970 MtrunA17_Chr1g0210061 34.615 182 85 8 254 414 757 925 1.01e-14 76.6
Msa0838970 MtrunA17_Chr1g0210061 30.814 172 100 5 11 177 592 749 3.33e-14 75.1
Msa0838970 MtrunA17_Chr2g0309421 26.117 291 182 10 42 317 181 453 1.76e-12 69.3
Msa0838970 MtrunA17_Chr3g0140071 30.822 146 85 5 34 177 5 136 3.36e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0838970 AT4G35500.1 72.870 446 109 4 1 443 1 437 0.0 653
Msa0838970 AT2G17530.1 75.730 445 97 4 1 443 1 436 0.0 647
Msa0838970 AT2G17530.3 75.730 445 97 4 1 443 1 436 0.0 647
Msa0838970 AT4G35500.2 70.694 447 118 5 1 443 1 438 0.0 628
Msa0838970 AT2G17530.2 79.592 343 67 3 1 341 1 342 0.0 517
Msa0838970 AT3G53030.1 49.901 505 184 8 5 442 7 509 4.74e-171 491
Msa0838970 AT3G44850.1 51.613 465 163 7 12 415 19 482 1.64e-164 474
Msa0838970 AT5G22840.1 50.753 465 172 5 4 415 11 471 7.38e-164 473
Msa0838970 AT4G32660.1 30.123 405 209 12 21 414 55 396 1.67e-41 152
Msa0838970 AT4G32660.3 30.123 405 209 12 21 414 47 388 1.77e-41 152
Msa0838970 AT4G24740.7 29.310 406 211 12 21 414 44 385 3.25e-38 143
Msa0838970 AT4G24740.1 29.310 406 211 12 21 414 82 423 6.35e-38 143
Msa0838970 AT4G32660.2 30.861 337 171 10 21 356 55 330 1.93e-37 140
Msa0838970 AT4G24740.6 29.504 383 195 11 44 414 1 320 9.63e-37 137
Msa0838970 AT4G24740.9 29.504 383 195 11 44 414 1 320 9.63e-37 137
Msa0838970 AT4G24740.2 29.504 383 195 11 44 414 1 320 9.63e-37 137
Msa0838970 AT3G53570.1 28.676 408 216 11 21 415 99 444 1.21e-35 137
Msa0838970 AT3G53570.4 28.676 408 216 11 21 415 99 444 1.21e-35 137
Msa0838970 AT3G53570.2 28.676 408 216 11 21 415 99 444 1.21e-35 137
Msa0838970 AT3G53570.3 28.676 408 216 11 21 415 85 430 1.38e-35 137
Msa0838970 AT3G53570.5 28.676 408 216 11 21 415 85 430 1.38e-35 137
Msa0838970 AT4G24740.3 30.530 321 164 9 21 341 82 343 5.82e-34 130
Msa0838970 AT4G24740.5 30.872 298 148 8 44 341 1 240 1.02e-32 124
Msa0838970 AT4G32660.4 30.523 344 166 12 82 414 3 284 8.74e-32 123
Msa0838970 AT4G24740.4 30.420 286 147 8 21 306 82 315 6.75e-28 113
Msa0838970 AT5G35980.3 38.667 150 86 3 37 185 86 230 2.51e-22 100
Msa0838970 AT5G35980.3 42.424 99 50 2 254 352 232 323 1.77e-15 79.7
Msa0838970 AT5G35980.1 38.667 150 86 3 37 185 121 265 2.56e-22 100
Msa0838970 AT5G35980.1 42.424 99 50 2 254 352 267 358 1.90e-15 79.3
Msa0838970 AT5G35980.2 38.667 150 86 3 37 185 121 265 2.78e-22 100
Msa0838970 AT5G35980.2 42.424 99 50 2 254 352 267 358 2.03e-15 79.3
Msa0838970 AT1G73460.2 32.941 170 99 5 252 415 1001 1161 2.60e-21 97.8
Msa0838970 AT1G73460.2 32.258 155 96 3 29 179 849 998 1.58e-13 73.6
Msa0838970 AT1G73460.1 32.941 170 99 5 252 415 1001 1161 2.60e-21 97.8
Msa0838970 AT1G73460.1 32.258 155 96 3 29 179 849 998 1.58e-13 73.6
Msa0838970 AT1G73450.1 32.941 170 99 5 252 415 984 1144 2.68e-21 97.8
Msa0838970 AT1G73450.1 32.258 155 96 3 29 179 832 981 1.57e-13 73.6
Msa0838970 AT2G40120.1 24.060 399 213 12 29 419 252 568 8.34e-21 95.5
Msa0838970 AT4G24740.10 29.811 265 117 8 162 414 10 217 1.52e-20 90.5
Msa0838970 AT4G24740.8 29.811 265 117 8 162 414 10 217 1.52e-20 90.5
Msa0838970 AT3G17750.1 31.953 169 100 5 252 414 970 1129 4.59e-18 87.8
Msa0838970 AT3G17750.1 31.953 169 102 5 15 179 808 967 1.65e-13 73.6
Msa0838970 AT3G53640.1 32.961 179 93 6 254 414 470 639 1.14e-16 82.8
Msa0838970 AT3G53640.1 31.395 172 99 5 11 177 305 462 2.52e-12 69.3
Msa0838970 AT3G12690.1 26.573 286 177 9 42 315 189 453 9.78e-15 77.0
Msa0838970 AT3G12690.3 26.573 286 177 9 42 315 189 453 9.78e-15 77.0
Msa0838970 AT3G12690.2 26.573 286 177 9 42 315 189 453 9.78e-15 77.0
Msa0838970 AT1G13350.1 31.395 172 99 5 11 177 424 581 4.04e-14 75.1
Msa0838970 AT1G13350.1 30.168 179 98 6 254 414 589 758 1.12e-13 73.9
Msa0838970 AT1G13350.2 31.395 172 99 5 11 177 451 608 5.04e-14 74.7
Msa0838970 AT1G13350.2 30.168 179 98 6 254 414 616 785 1.34e-13 73.6
Msa0838970 AT1G13350.3 31.395 172 99 5 11 177 497 654 5.82e-14 74.7
Msa0838970 AT1G13350.3 30.168 179 98 6 254 414 662 831 1.08e-13 73.9
Msa0838970 AT3G25840.2 31.638 177 97 6 254 414 502 670 7.09e-14 74.3
Msa0838970 AT3G25840.2 30.233 172 101 5 11 177 337 494 2.60e-12 69.3
Msa0838970 AT3G25840.1 31.638 177 97 6 254 414 764 932 1.94e-13 73.2
Msa0838970 AT3G25840.1 30.233 172 101 5 11 177 599 756 2.61e-12 69.7
Msa0838970 AT4G26610.1 27.003 337 202 13 2 317 87 400 2.55e-12 68.9
Msa0838970 AT1G04440.1 28.571 147 93 4 31 177 2 136 7.60e-11 64.3

Find 133 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATGCAAGATTGTCGATTT+TGG 0.222958 5_4:-13552030 Msa0838970:CDS
TACAAAGAATGTCACTAAAT+TGG 0.264728 5_4:+13550470 None:intergenic
ACCGGCATGGTGATCTAAAA+AGG 0.287476 5_4:-13550982 Msa0838970:CDS
TTTAGTGACATTCTTTGTAT+TGG 0.310376 5_4:-13550466 Msa0838970:three_prime_UTR
ATAACCTTGTCCACCACCTT+TGG 0.312925 5_4:+13551846 None:intergenic
TGCATGGTCCTTGAGTTTCT+TGG 0.316560 5_4:-13552432 Msa0838970:CDS
TAACCTTGTCCACCACCTTT+GGG 0.320820 5_4:+13551847 None:intergenic
TTTGAGAATCACCAATGAAA+TGG 0.326560 5_4:+13554078 None:intergenic
CCTCAGTCCGTTCTAAAGTT+GGG 0.329112 5_4:+13552205 None:intergenic
ATGTCTTGTTCTTCTTCATC+AGG 0.333473 5_4:-13553970 Msa0838970:CDS
AGTTCAGCCAGGGGTGTTGC+AGG 0.337595 5_4:+13550816 None:intergenic
ACTTTCCTACCTTGATTTGA+AGG 0.337930 5_4:+13550723 None:intergenic
GGGGAGAGTCCGGATCTAAA+AGG 0.349666 5_4:+13552225 None:intergenic
TCCGGATCTAAAAGGGTCTT+TGG 0.351019 5_4:+13552233 None:intergenic
ATGCAATGGTGCTGCCCATT+TGG 0.353666 5_4:+13552450 None:intergenic
TGGGAGTGTACTCACCTTCC+GGG 0.362905 5_4:+13551104 None:intergenic
AAGTGCGGCCGAGTTTGTTC+AGG 0.372250 5_4:-13552574 Msa0838970:CDS
GCGTGCAGTTGCTAAAATAT+CGG 0.390478 5_4:-13552124 Msa0838970:CDS
GATTCATTTCTCATTTCATT+TGG 0.391464 5_4:+13550779 None:intergenic
GCTTAAAGTTATCAATCAAT+TGG 0.393123 5_4:+13552481 None:intergenic
ATCTCTCTAACTTTATTCAA+TGG 0.394338 5_4:+13552363 None:intergenic
TGCTCAGAGGAAACTTGGTT+GGG 0.402208 5_4:-13553854 Msa0838970:CDS
GATTACTTGCATAGTGAACT+TGG 0.411710 5_4:-13552315 Msa0838970:CDS
CCCTCAGTCCGTTCTAAAGT+TGG 0.414075 5_4:+13552204 None:intergenic
GGGGTCAATTCTCCACCGTT+TGG 0.419364 5_4:-13553834 Msa0838970:CDS
TTTACCACAATCAAAGAATC+TGG 0.423144 5_4:-13550671 Msa0838970:three_prime_UTR
TTTAAGCACACAGGTCCAAA+TGG 0.425606 5_4:-13552465 Msa0838970:CDS
TGATTCATTGCAGTTCAGCC+AGG 0.429978 5_4:+13550805 None:intergenic
TTCTAAAGTTGGGGAGAGTC+CGG 0.433511 5_4:+13552215 None:intergenic
GGATCATCTTGCCTTGATGA+TGG 0.437810 5_4:-13551145 Msa0838970:CDS
TTACAAGTCTTATTGAGAAA+AGG 0.437935 5_4:-13552164 Msa0838970:CDS
CCAGACTTCAGTATAACTTC+AGG 0.439622 5_4:+13551946 None:intergenic
TGTGGATTGCAGATTGCAAT+TGG 0.442014 5_4:-13551031 Msa0838970:intron
TTGAGAATCACCAATGAAAT+GGG 0.454404 5_4:+13554079 None:intergenic
AAATGAATCTACTGTGGAAA+AGG 0.456827 5_4:-13550765 Msa0838970:CDS
TATATTGCTCAGAGGAAACT+TGG 0.462401 5_4:-13553859 Msa0838970:CDS
ACAACAAACTTTGAATTCGA+TGG 0.467683 5_4:+13552504 None:intergenic
TTGTTCTTCTTCATCAGGAT+CGG 0.468336 5_4:-13553965 Msa0838970:CDS
GGCAATACCTGCAACACCCC+TGG 0.477580 5_4:-13550823 Msa0838970:CDS
CGGTCCAGATTCTTTGATTG+TGG 0.478246 5_4:+13550667 None:intergenic
TCAATGGAAGACCTTTGTAA+TGG 0.483257 5_4:+13552379 None:intergenic
CGTGCAGTTGCTAAAATATC+GGG 0.483843 5_4:-13552123 Msa0838970:CDS
GGAAGAACAACTTCAATTGA+AGG 0.487725 5_4:-13552102 Msa0838970:CDS
CCGACTTTGTTTCGACCTAA+CGG 0.488082 5_4:+13550647 None:intergenic
AACTCCTCGGAAAGATGCCC+CGG 0.493756 5_4:-13551122 Msa0838970:CDS
TTGCTCAGAGGAAACTTGGT+TGG 0.496479 5_4:-13553855 Msa0838970:CDS
TTCTTTCAACCATTGCTGAT+GGG 0.501024 5_4:-13552530 Msa0838970:CDS
CAGACTTCAGTATAACTTCA+GGG 0.503743 5_4:+13551947 None:intergenic
CCTGAAGTTATACTGAAGTC+TGG 0.506057 5_4:-13551946 Msa0838970:CDS
GATTCATTGCAGTTCAGCCA+GGG 0.507004 5_4:+13550806 None:intergenic
ATGCCGGTCAAAGTAATCCT+TGG 0.507357 5_4:+13550997 None:intergenic
GTTCTTTCAACCATTGCTGA+TGG 0.515507 5_4:-13552531 Msa0838970:CDS
TGTTTGATTGAGGCAAATGC+GGG 0.520079 5_4:-13550592 Msa0838970:three_prime_UTR
TCCGAGGAGTTCCATCATCA+AGG 0.521134 5_4:+13551134 None:intergenic
ATTGCTTTCGAGCTTGCCAC+TGG 0.524146 5_4:-13551886 Msa0838970:CDS
CTCAGTCCGTTCTAAAGTTG+GGG 0.526561 5_4:+13552206 None:intergenic
TCTTTCAACCATTGCTGATG+GGG 0.528594 5_4:-13552529 Msa0838970:CDS
AATCCAAGGATTACTTTGAC+CGG 0.528653 5_4:-13551000 Msa0838970:CDS
TATGAGCAACCTTCAAATCA+AGG 0.531115 5_4:-13550732 Msa0838970:CDS
TGGTTTGAATTGTTTGATTG+AGG 0.532138 5_4:-13550602 Msa0838970:three_prime_UTR
ACAACTTCAATTGAAGGAAG+AGG 0.534696 5_4:-13552096 Msa0838970:CDS
CAACAAACTTTGAATTCGAT+GGG 0.538001 5_4:+13552505 None:intergenic
ATCAAAGAATCTGGACCGTT+AGG 0.538356 5_4:-13550662 Msa0838970:three_prime_UTR
GGGAGAGTCCGGATCTAAAA+GGG 0.543496 5_4:+13552226 None:intergenic
TTATTTACACCCAAAGGTGG+TGG 0.545111 5_4:-13551856 Msa0838970:CDS
GAGATCCGATCTTAATCTGA+TGG 0.545249 5_4:-13550622 Msa0838970:three_prime_UTR
TGCAGGTATTGCCGTGCAGT+TGG 0.547161 5_4:+13550833 None:intergenic
GGATTGCAGATTGCAATTGG+TGG 0.549667 5_4:-13551028 Msa0838970:intron
ATGAGGGATTTGAGTCCTAT+CGG 0.552054 5_4:-13553933 Msa0838970:CDS
TTAAGCACACAGGTCCAAAT+GGG 0.558245 5_4:-13552464 Msa0838970:CDS
TCAATCAGCAATTTGTCAAG+TGG 0.561218 5_4:+13550938 None:intergenic
CTGATCAATTCGCGGGTGGG+AGG 0.561858 5_4:-13553882 Msa0838970:CDS
GATATGTTATTTACACCCAA+AGG 0.565138 5_4:-13551862 Msa0838970:CDS
TCAAACCATCAGATTAAGAT+CGG 0.565789 5_4:+13550617 None:intergenic
ACACCCAAAGGTGGTGGACA+AGG 0.567008 5_4:-13551850 Msa0838970:CDS
TAGAGTCGCTGATCAATTCG+CGG 0.570049 5_4:-13553890 Msa0838970:CDS
CCTTCCGGGGCATCTTTCCG+AGG 0.576947 5_4:+13551118 None:intergenic
CGATGGGTCCCCATCAGCAA+TGG 0.578011 5_4:+13552521 None:intergenic
TTCTTCTTCATCAGGATCGG+AGG 0.578889 5_4:-13553962 Msa0838970:CDS
ACAAGGTTATAGCGAGGATG+AGG 0.579359 5_4:-13551833 Msa0838970:intron
CAAATGCGGGTCTGACTGCA+AGG 0.579453 5_4:-13550579 Msa0838970:three_prime_UTR
AAGGATTACTTTGACCGGCA+TGG 0.580864 5_4:-13550995 Msa0838970:CDS
ACTGTGGAAAAGGTTAATGT+TGG 0.582824 5_4:-13550755 Msa0838970:CDS
ATCAAATACAGCCATTACAA+AGG 0.586492 5_4:-13552390 Msa0838970:CDS
ATTCATTGCAGTTCAGCCAG+GGG 0.586651 5_4:+13550807 None:intergenic
AGGATCGGAGGAAGATGATG+AGG 0.592202 5_4:-13553950 Msa0838970:CDS
GATCTAAAAGGGTCTTTGGA+AGG 0.592260 5_4:+13552237 None:intergenic
GTCGCTGATCAATTCGCGGG+TGG 0.594980 5_4:-13553886 Msa0838970:CDS
AAGGGCAGCCTGAACAAACT+CGG 0.595404 5_4:+13552566 None:intergenic
TCGCTGATCAATTCGCGGGT+GGG 0.599945 5_4:-13553885 Msa0838970:CDS
ATTGATAACTTTAAGCACAC+AGG 0.601668 5_4:-13552474 Msa0838970:CDS
TGTAAATAACATATCTCCAG+TGG 0.603326 5_4:+13551870 None:intergenic
CGGACTGAGGGAAACACAAA+CGG 0.603582 5_4:-13552192 Msa0838970:CDS
TTTCAGGCTTTAAGTCTGTG+TGG 0.603818 5_4:+13552286 None:intergenic
AAATCAAGGTAGGAAAGTGA+AGG 0.604919 5_4:-13550718 Msa0838970:exon
GCTCAGAGGAAACTTGGTTG+GGG 0.605080 5_4:-13553853 Msa0838970:CDS
AACAAAACACAAGACCCAGA+TGG 0.607452 5_4:+13554023 None:intergenic
AATTGGTGGAGCTCAATCCA+AGG 0.608972 5_4:-13551014 Msa0838970:CDS
ATGGTATCCACCTTTCCGAT+AGG 0.609356 5_4:+13553918 None:intergenic
AGTCTAGTAGAAATATCGAC+GGG 0.609550 5_4:-13552062 Msa0838970:CDS
AAATGGGCAGCACCATTGCA+TGG 0.610699 5_4:-13552448 Msa0838970:CDS
AGAGTCGCTGATCAATTCGC+GGG 0.611441 5_4:-13553889 Msa0838970:CDS
TTGTTTGATTGAGGCAAATG+CGG 0.618583 5_4:-13550593 Msa0838970:three_prime_UTR
TTTGAGTCCTATCGGAAAGG+TGG 0.621569 5_4:-13553925 Msa0838970:CDS
AAGTCTAGTAGAAATATCGA+CGG 0.621748 5_4:-13552063 Msa0838970:CDS
AAAGAACGTTGATCTCGTGA+AGG 0.622147 5_4:+13552547 None:intergenic
GGGAGTGTACTCACCTTCCG+GGG 0.625406 5_4:+13551105 None:intergenic
AAGAACGTTGATCTCGTGAA+GGG 0.630667 5_4:+13552548 None:intergenic
AGTATCATAAGCAAGCCAAA+CGG 0.632450 5_4:+13553819 None:intergenic
GAAACTCAAGGACCATGCAA+TGG 0.636117 5_4:+13552436 None:intergenic
CCCAACTTTAGAACGGACTG+AGG 0.637641 5_4:-13552205 Msa0838970:CDS
AGCAACCTTCAAATCAAGGT+AGG 0.638879 5_4:-13550728 Msa0838970:CDS
GACTCTCCCCAACTTTAGAA+CGG 0.639593 5_4:-13552212 Msa0838970:CDS
GTACAATACGTGTTCTGACA+AGG 0.640270 5_4:-13550696 Msa0838970:three_prime_UTR
ATGTTATTTACACCCAAAGG+TGG 0.642360 5_4:-13551859 Msa0838970:CDS
CCGTTAGGTCGAAACAAAGT+CGG 0.644967 5_4:-13550647 Msa0838970:three_prime_UTR
ATCATAAGCAAGCCAAACGG+TGG 0.646324 5_4:+13553822 None:intergenic
CCTCGGAAAGATGCCCCGGA+AGG 0.647925 5_4:-13551118 Msa0838970:intron
GGATTTGAGTCCTATCGGAA+AGG 0.650525 5_4:-13553928 Msa0838970:CDS
AGCTATCACCAAGAAACTCA+AGG 0.651636 5_4:+13552424 None:intergenic
GGATCGGAGGAAGATGATGA+GGG 0.654053 5_4:-13553949 Msa0838970:CDS
GCCTTGATGATGGAACTCCT+CGG 0.654637 5_4:-13551135 Msa0838970:CDS
ATTCCTCGTCTGTAGACATG+TGG 0.655799 5_4:-13551921 Msa0838970:CDS
GATCAGCGACTCTAACAGCA+TGG 0.659062 5_4:+13553899 None:intergenic
ATAAGAAGAACATACAGAGG+TGG 0.667158 5_4:+13553795 None:intergenic
AATGAGAAATGAATCTACTG+TGG 0.670154 5_4:-13550771 Msa0838970:CDS
CCAACTTTAGAACGGACTGA+GGG 0.670163 5_4:-13552204 Msa0838970:CDS
AGACTTCAGTATAACTTCAG+GGG 0.688658 5_4:+13551948 None:intergenic
ACTGAGGGAAACACAAACGG+TGG 0.700333 5_4:-13552189 Msa0838970:CDS
TGGTGGACAAGGTTATAGCG+AGG 0.709203 5_4:-13551839 Msa0838970:CDS
TCTCAAAATCCAGAAAAGTG+CGG 0.715435 5_4:-13552589 Msa0838970:CDS
GTGGGAGGTATATTGCTCAG+AGG 0.720598 5_4:-13553867 Msa0838970:CDS
AGACCACATGTCTACAGACG+AGG 0.723587 5_4:+13551918 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTAATTAATTTTGTGT+AGG + chr5_4:13550409-13550428 None:intergenic 10.0%
!! ATTTCAAAAATATTCTATAT+GGG - chr5_4:13551772-13551791 Msa0838970:intron 10.0%
!!! ATAATTTTAAAAATTATCAC+TGG + chr5_4:13551841-13551860 None:intergenic 10.0%
!!! CAAATAATATAAGTTTTTAT+AGG + chr5_4:13553307-13553326 None:intergenic 10.0%
!! AATCATGAAAAACAAAAAAT+AGG + chr5_4:13550759-13550778 None:intergenic 15.0%
!!! TTTTTTTGTTATTGAATGAA+TGG - chr5_4:13550904-13550923 Msa0838970:CDS 15.0%
!! GATTTCAAAAATATTCTATA+TGG - chr5_4:13551771-13551790 Msa0838970:intron 15.0%
!! AAATTAGAAAAAGATATTAG+TGG + chr5_4:13551873-13551892 None:intergenic 15.0%
!!! ATTTGTAAATACATTTTGAT+TGG - chr5_4:13552167-13552186 Msa0838970:CDS 15.0%
!!! AAACTTATATTATTTGTTAC+TGG - chr5_4:13553311-13553330 Msa0838970:intron 15.0%
!!! CATTTCTAAAATAAATATTG+TGG - chr5_4:13553442-13553461 Msa0838970:intron 15.0%
!! ATTAAAAATACCCATTTCAT+TGG - chr5_4:13550420-13550439 Msa0838970:three_prime_UTR 20.0%
!!! TTTAAAAATTATCACTGGTT+GGG + chr5_4:13551836-13551855 None:intergenic 20.0%
!!! TTTTAAAAATTATCACTGGT+TGG + chr5_4:13551837-13551856 None:intergenic 20.0%
!!! TAAATACATTTTGATTGGTT+TGG - chr5_4:13552172-13552191 Msa0838970:CDS 20.0%
!! CATGATCATAAAAAGAATAA+AGG + chr5_4:13553223-13553242 None:intergenic 20.0%
!!! GATGTGAAGTATTTTGTTTT+TGG + chr5_4:13550376-13550395 None:intergenic 25.0%
!!! AAAGTTTTGATTTTTCCATC+TGG - chr5_4:13550471-13550490 Msa0838970:three_prime_UTR 25.0%
!!! AAGTTTTGATTTTTCCATCT+GGG - chr5_4:13550472-13550491 Msa0838970:three_prime_UTR 25.0%
! AATCTGATCAAAGAAAAAAG+TGG - chr5_4:13550513-13550532 Msa0838970:three_prime_UTR 25.0%
! ATCTGATCAAAGAAAAAAGT+GGG - chr5_4:13550514-13550533 Msa0838970:three_prime_UTR 25.0%
!! TTTTTCATGATTTTCACATG+TGG - chr5_4:13550767-13550786 Msa0838970:CDS 25.0%
!!! TTGTTTGTTATGTTTTGTGT+AGG - chr5_4:13550835-13550854 Msa0838970:CDS 25.0%
! CCAACAAAAAAAGGAATTAT+CGG + chr5_4:13550990-13551009 None:intergenic 25.0%
!!! ATTCCTTTTTTTGTTGGAAT+TGG - chr5_4:13550993-13551012 Msa0838970:CDS 25.0%
! ATTCCAATTCCAACAAAAAA+AGG + chr5_4:13550999-13551018 None:intergenic 25.0%
! AATTGGAATAGCTGAAAATT+GGG - chr5_4:13551010-13551029 Msa0838970:CDS 25.0%
! GACAAAAACAATGTAACATA+AGG + chr5_4:13551064-13551083 None:intergenic 25.0%
!!! TTTTTTTGCTGTCAAGATTT+AGG - chr5_4:13551221-13551240 Msa0838970:intron 25.0%
! ACGTTAGAAACAAATACATT+TGG - chr5_4:13551321-13551340 Msa0838970:intron 25.0%
! ATTTGGTAGACATATTAGAA+TGG - chr5_4:13551338-13551357 Msa0838970:intron 25.0%
! TTTGGTAGACATATTAGAAT+GGG - chr5_4:13551339-13551358 Msa0838970:intron 25.0%
! TATTATGTTTGACCTATGTT+TGG - chr5_4:13551387-13551406 Msa0838970:intron 25.0%
! TATTGGTGCAAATTAACAAA+TGG - chr5_4:13551524-13551543 Msa0838970:intron 25.0%
! ATTGGTGCAAATTAACAAAT+GGG - chr5_4:13551525-13551544 Msa0838970:intron 25.0%
!!! GACAATTGGTTTGTTTTATT+TGG - chr5_4:13551620-13551639 Msa0838970:intron 25.0%
! CTTCATTAACTTAATCAAGA+TGG - chr5_4:13551667-13551686 Msa0838970:intron 25.0%
! GCTTAAAGTTATCAATCAAT+TGG + chr5_4:13552031-13552050 None:intergenic 25.0%
! ATCTCTCTAACTTTATTCAA+TGG + chr5_4:13552149-13552168 None:intergenic 25.0%
!! GAAAATAGAAGAATGTTTTC+AGG + chr5_4:13552242-13552261 None:intergenic 25.0%
!!! TTACAAGTCTTATTGAGAAA+AGG - chr5_4:13552345-13552364 Msa0838970:CDS 25.0%
!!! ATTTTTCTAGTAAACTGTTG+TGG - chr5_4:13552706-13552725 Msa0838970:intron 25.0%
! GGTTTAATATGTGAAAAAAC+TGG - chr5_4:13552769-13552788 Msa0838970:intron 25.0%
! ACCATTAATAAAAAGAGACA+CGG - chr5_4:13552810-13552829 Msa0838970:intron 25.0%
! CATAAAAACTCTATCGTTTA+GGG + chr5_4:13553105-13553124 None:intergenic 25.0%
! TCATAAAAACTCTATCGTTT+AGG + chr5_4:13553106-13553125 None:intergenic 25.0%
! GAAACTTTGAATTTCATTCT+CGG + chr5_4:13553136-13553155 None:intergenic 25.0%
! CTTAAATTGTTGTATGCAAA+AGG - chr5_4:13553182-13553201 Msa0838970:intron 25.0%
!! TCTTTTTATGATCATGTTGA+AGG - chr5_4:13553227-13553246 Msa0838970:intron 25.0%
!! CTTTTTATGATCATGTTGAA+GGG - chr5_4:13553228-13553247 Msa0838970:intron 25.0%
! GATTCATTTCTCATTTCATT+TGG + chr5_4:13553733-13553752 None:intergenic 25.0%
!!! ATTTTGACTATGTCAAAACA+CGG + chr5_4:13553965-13553984 None:intergenic 25.0%
! TACAAAGAATGTCACTAAAT+TGG + chr5_4:13554042-13554061 None:intergenic 25.0%
! TTTAGTGACATTCTTTGTAT+TGG - chr5_4:13554043-13554062 Msa0838970:five_prime_UTR 25.0%
! ATTTTGTGTAGGAAATTGCT+TGG + chr5_4:13550398-13550417 None:intergenic 30.0%
TTGAGAATCACCAATGAAAT+GGG + chr5_4:13550433-13550452 None:intergenic 30.0%
TTTGAGAATCACCAATGAAA+TGG + chr5_4:13550434-13550453 None:intergenic 30.0%
AGTATAAGAAGAACATACAG+AGG + chr5_4:13550720-13550739 None:intergenic 30.0%
TAGGTTTACTAGCTCAAATT+TGG - chr5_4:13550854-13550873 Msa0838970:CDS 30.0%
AACACACATTGAACAAAAGA+AGG + chr5_4:13550954-13550973 None:intergenic 30.0%
!!! CCGATAATTCCTTTTTTTGT+TGG - chr5_4:13550987-13551006 Msa0838970:CDS 30.0%
GAATTGGAATAGCTGAAAAT+TGG - chr5_4:13551009-13551028 Msa0838970:CDS 30.0%
AAACAATGTAACATAAGGTC+AGG + chr5_4:13551059-13551078 None:intergenic 30.0%
CATGTACCATTTATGTTTGT+TGG - chr5_4:13551136-13551155 Msa0838970:CDS 30.0%
GTACTTCCAACAAACATAAA+TGG + chr5_4:13551145-13551164 None:intergenic 30.0%
! TTTATGTTTGTTGGAAGTAC+CGG - chr5_4:13551145-13551164 Msa0838970:CDS 30.0%
AAGACAATTATTCTCATTCC+CGG + chr5_4:13551167-13551186 None:intergenic 30.0%
TGAGAATAATTGTCTTTCTC+AGG - chr5_4:13551171-13551190 Msa0838970:intron 30.0%
!! AAGATTTAGGAGCCATTTTA+TGG - chr5_4:13551234-13551253 Msa0838970:intron 30.0%
ATTTATGGTATCACAAGTCT+TGG + chr5_4:13551262-13551281 None:intergenic 30.0%
AAGACTTGTGATACCATAAA+TGG - chr5_4:13551261-13551280 Msa0838970:intron 30.0%
ATGGGATGAAACATAATACT+AGG - chr5_4:13551357-13551376 Msa0838970:intron 30.0%
TGGGATGAAACATAATACTA+GGG - chr5_4:13551358-13551377 Msa0838970:intron 30.0%
ATTGAAGTGTATCCAAACAT+AGG + chr5_4:13551402-13551421 None:intergenic 30.0%
TTGTAGCTTCTCAAAAATCA+CGG + chr5_4:13551447-13551466 None:intergenic 30.0%
!!! AGGAGACTGTTGTTTTAATA+TGG + chr5_4:13551695-13551714 None:intergenic 30.0%
ATATTAAAACAACAGTCTCC+TGG - chr5_4:13551694-13551713 Msa0838970:intron 30.0%
GGATATTAATCTTAGCAACA+GGG + chr5_4:13551720-13551739 None:intergenic 30.0%
TGGATATTAATCTTAGCAAC+AGG + chr5_4:13551721-13551740 None:intergenic 30.0%
CAACAAACTTTGAATTCGAT+GGG + chr5_4:13552007-13552026 None:intergenic 30.0%
ACAACAAACTTTGAATTCGA+TGG + chr5_4:13552008-13552027 None:intergenic 30.0%
! ATTGATAACTTTAAGCACAC+AGG - chr5_4:13552035-13552054 Msa0838970:CDS 30.0%
ATCAAATACAGCCATTACAA+AGG - chr5_4:13552119-13552138 Msa0838970:CDS 30.0%
AAGTCTAGTAGAAATATCGA+CGG - chr5_4:13552446-13552465 Msa0838970:CDS 30.0%
TGTAAATAACATATCTCCAG+TGG + chr5_4:13552642-13552661 None:intergenic 30.0%
! GATATGTTATTTACACCCAA+AGG - chr5_4:13552647-13552666 Msa0838970:intron 30.0%
CCATTAATAAAAAGAGACAC+GGG - chr5_4:13552811-13552830 Msa0838970:intron 30.0%
GTACTAAATAATATGTGTCC+TGG - chr5_4:13553050-13553069 Msa0838970:intron 30.0%
ATGAGAAATTGTTCAAAACC+AGG + chr5_4:13553071-13553090 None:intergenic 30.0%
TAGGTTCTATAGAAATAGCA+TGG + chr5_4:13553288-13553307 None:intergenic 30.0%
AATGAGAAATGAATCTACTG+TGG - chr5_4:13553738-13553757 Msa0838970:intron 30.0%
AAATGAATCTACTGTGGAAA+AGG - chr5_4:13553744-13553763 Msa0838970:intron 30.0%
TTTACCACAATCAAAGAATC+TGG - chr5_4:13553838-13553857 Msa0838970:CDS 30.0%
TCAAACCATCAGATTAAGAT+CGG + chr5_4:13553895-13553914 None:intergenic 30.0%
TGGTTTGAATTGTTTGATTG+AGG - chr5_4:13553907-13553926 Msa0838970:CDS 30.0%
! ATGTCTTGTTCTTCTTCATC+AGG - chr5_4:13550539-13550558 Msa0838970:three_prime_UTR 35.0%
TTGTTCTTCTTCATCAGGAT+CGG - chr5_4:13550544-13550563 Msa0838970:three_prime_UTR 35.0%
TATATTGCTCAGAGGAAACT+TGG - chr5_4:13550650-13550669 Msa0838970:three_prime_UTR 35.0%
AGTATCATAAGCAAGCCAAA+CGG + chr5_4:13550693-13550712 None:intergenic 35.0%
ATAAGAAGAACATACAGAGG+TGG + chr5_4:13550717-13550736 None:intergenic 35.0%
GAATAGCTGAAAATTGGGAA+TGG - chr5_4:13551015-13551034 Msa0838970:CDS 35.0%
!! TTATGTTTGTTGGAAGTACC+GGG - chr5_4:13551146-13551165 Msa0838970:CDS 35.0%
CAAGTCTTGGATCCATAAAA+TGG + chr5_4:13551249-13551268 None:intergenic 35.0%
!! ACATTAACTCGTGCCATTTA+TGG + chr5_4:13551277-13551296 None:intergenic 35.0%
TAAATGGCACGAGTTAATGT+AGG - chr5_4:13551277-13551296 Msa0838970:intron 35.0%
GGGATGAAACATAATACTAG+GGG - chr5_4:13551359-13551378 Msa0838970:intron 35.0%
GGATGAAACATAATACTAGG+GGG - chr5_4:13551360-13551379 Msa0838970:intron 35.0%
GATGAAACATAATACTAGGG+GGG - chr5_4:13551361-13551380 Msa0838970:intron 35.0%
!! TACAACTTGTAGCTTTGAAG+TGG - chr5_4:13551462-13551481 Msa0838970:intron 35.0%
! GAGTGAAAGTGTAAAACAAG+TGG - chr5_4:13551553-13551572 Msa0838970:intron 35.0%
!! TTGTCCTGTTTTGTTCTCTT+TGG + chr5_4:13551605-13551624 None:intergenic 35.0%
AGAGAACAAAACAGGACAAT+TGG - chr5_4:13551606-13551625 Msa0838970:intron 35.0%
ACGTGAAGAAAAGATGAACT+TGG + chr5_4:13551741-13551760 None:intergenic 35.0%
TCTCAAAATCCAGAAAAGTG+CGG - chr5_4:13551920-13551939 Msa0838970:CDS 35.0%
TTCTTTCAACCATTGCTGAT+GGG - chr5_4:13551979-13551998 Msa0838970:CDS 35.0%
TCAATGGAAGACCTTTGTAA+TGG + chr5_4:13552133-13552152 None:intergenic 35.0%
GATTACTTGCATAGTGAACT+TGG - chr5_4:13552194-13552213 Msa0838970:CDS 35.0%
GGAAGAACAACTTCAATTGA+AGG - chr5_4:13552407-13552426 Msa0838970:CDS 35.0%
ACAACTTCAATTGAAGGAAG+AGG - chr5_4:13552413-13552432 Msa0838970:CDS 35.0%
AGTCTAGTAGAAATATCGAC+GGG - chr5_4:13552447-13552466 Msa0838970:CDS 35.0%
!!! AGATGCAAGATTGTCGATTT+TGG - chr5_4:13552479-13552498 Msa0838970:CDS 35.0%
AGACTTCAGTATAACTTCAG+GGG + chr5_4:13552564-13552583 None:intergenic 35.0%
CAGACTTCAGTATAACTTCA+GGG + chr5_4:13552565-13552584 None:intergenic 35.0%
! ATGTTATTTACACCCAAAGG+TGG - chr5_4:13552650-13552669 Msa0838970:intron 35.0%
! TATGGTTAACGAGTTTTCAG+AGG - chr5_4:13552748-13552767 Msa0838970:intron 35.0%
! CCCGTGTCTCTTTTTATTAA+TGG + chr5_4:13552814-13552833 None:intergenic 35.0%
!! TTGATAGTGTGAAAAGTGTC+AGG - chr5_4:13552959-13552978 Msa0838970:intron 35.0%
!! TGATAGTGTGAAAAGTGTCA+GGG - chr5_4:13552960-13552979 Msa0838970:intron 35.0%
! ATTCTTTTATAGCCCATGTG+AGG - chr5_4:13553024-13553043 Msa0838970:intron 35.0%
! TTCTTTTATAGCCCATGTGA+GGG - chr5_4:13553025-13553044 Msa0838970:intron 35.0%
TGATCATGTTGAAGGGAAAA+TGG - chr5_4:13553235-13553254 Msa0838970:intron 35.0%
AAATGAAACATGCTGACAGT+GGG + chr5_4:13553427-13553446 None:intergenic 35.0%
AATCCAAGGATTACTTTGAC+CGG - chr5_4:13553509-13553528 Msa0838970:intron 35.0%
GTGATCTAAAAAGGATTCGT+AGG - chr5_4:13553536-13553555 Msa0838970:intron 35.0%
TCAATCAGCAATTTGTCAAG+TGG + chr5_4:13553574-13553593 None:intergenic 35.0%
ACTGTGGAAAAGGTTAATGT+TGG - chr5_4:13553754-13553773 Msa0838970:intron 35.0%
TATGAGCAACCTTCAAATCA+AGG - chr5_4:13553777-13553796 Msa0838970:intron 35.0%
! ACTTTCCTACCTTGATTTGA+AGG + chr5_4:13553789-13553808 None:intergenic 35.0%
AAATCAAGGTAGGAAAGTGA+AGG - chr5_4:13553791-13553810 Msa0838970:intron 35.0%
TTGTTTGATTGAGGCAAATG+CGG - chr5_4:13553916-13553935 Msa0838970:CDS 35.0%
AACAAAACACAAGACCCAGA+TGG + chr5_4:13550489-13550508 None:intergenic 40.0%
!! ATCTGGGTCTTGTGTTTTGT+TGG - chr5_4:13550488-13550507 Msa0838970:three_prime_UTR 40.0%
ATGAGGGATTTGAGTCCTAT+CGG - chr5_4:13550576-13550595 Msa0838970:three_prime_UTR 40.0%
!! GTCAGGTTTTGTGAATTGTG+AGG + chr5_4:13551042-13551061 None:intergenic 40.0%
!! CAATAGCCTGTTTGTTTCTG+TGG + chr5_4:13551509-13551528 None:intergenic 40.0%
CACAGAAACAAACAGGCTAT+TGG - chr5_4:13551507-13551526 Msa0838970:intron 40.0%
! CTTTGGTTCGATATTCTCAG+TGG + chr5_4:13551588-13551607 None:intergenic 40.0%
CGAACCAAAGAGAACAAAAC+AGG - chr5_4:13551598-13551617 Msa0838970:intron 40.0%
AAGAACGTTGATCTCGTGAA+GGG + chr5_4:13551964-13551983 None:intergenic 40.0%
AAAGAACGTTGATCTCGTGA+AGG + chr5_4:13551965-13551984 None:intergenic 40.0%
GTTCTTTCAACCATTGCTGA+TGG - chr5_4:13551978-13551997 Msa0838970:CDS 40.0%
TCTTTCAACCATTGCTGATG+GGG - chr5_4:13551980-13551999 Msa0838970:CDS 40.0%
TTTAAGCACACAGGTCCAAA+TGG - chr5_4:13552044-13552063 Msa0838970:CDS 40.0%
TTAAGCACACAGGTCCAAAT+GGG - chr5_4:13552045-13552064 Msa0838970:CDS 40.0%
AGCTATCACCAAGAAACTCA+AGG + chr5_4:13552088-13552107 None:intergenic 40.0%
!! TTTCAGGCTTTAAGTCTGTG+TGG + chr5_4:13552226-13552245 None:intergenic 40.0%
GATCTAAAAGGGTCTTTGGA+AGG + chr5_4:13552275-13552294 None:intergenic 40.0%
! TCCAAAGACCCTTTTAGATC+CGG - chr5_4:13552275-13552294 Msa0838970:CDS 40.0%
GCGTGCAGTTGCTAAAATAT+CGG - chr5_4:13552385-13552404 Msa0838970:CDS 40.0%
CGTGCAGTTGCTAAAATATC+GGG - chr5_4:13552386-13552405 Msa0838970:CDS 40.0%
!! TCGATTTTGGAAATGCGTGT+TGG - chr5_4:13552492-13552511 Msa0838970:CDS 40.0%
!! CGATTTTGGAAATGCGTGTT+GGG - chr5_4:13552493-13552512 Msa0838970:CDS 40.0%
CCAGACTTCAGTATAACTTC+AGG + chr5_4:13552566-13552585 None:intergenic 40.0%
CCTGAAGTTATACTGAAGTC+TGG - chr5_4:13552563-13552582 Msa0838970:CDS 40.0%
TTATTTACACCCAAAGGTGG+TGG - chr5_4:13552653-13552672 Msa0838970:intron 40.0%
ATTTAGTACCTCCCTCACAT+GGG + chr5_4:13553039-13553058 None:intergenic 40.0%
TATTTAGTACCTCCCTCACA+TGG + chr5_4:13553040-13553059 None:intergenic 40.0%
!! AATGTCCTTGTGCTGATTTC+AGG - chr5_4:13553343-13553362 Msa0838970:intron 40.0%
ATGATCCTGAAATCAGCACA+AGG + chr5_4:13553351-13553370 None:intergenic 40.0%
GAAATGAAACATGCTGACAG+TGG + chr5_4:13553428-13553447 None:intergenic 40.0%
TGTGGCATATCTAATGCTTG+TGG - chr5_4:13553460-13553479 Msa0838970:intron 40.0%
! TGTGGATTGCAGATTGCAAT+TGG - chr5_4:13553478-13553497 Msa0838970:intron 40.0%
! TCCTTTTTAGATCACCATGC+CGG + chr5_4:13553531-13553550 None:intergenic 40.0%
TCTGGCGCAAAATCAAAAAG+TGG + chr5_4:13553649-13553668 None:intergenic 40.0%
AGCAACCTTCAAATCAAGGT+AGG - chr5_4:13553781-13553800 Msa0838970:intron 40.0%
GTACAATACGTGTTCTGACA+AGG - chr5_4:13553813-13553832 Msa0838970:CDS 40.0%
ATCAAAGAATCTGGACCGTT+AGG - chr5_4:13553847-13553866 Msa0838970:CDS 40.0%
GAGATCCGATCTTAATCTGA+TGG - chr5_4:13553887-13553906 Msa0838970:CDS 40.0%
TGTTTGATTGAGGCAAATGC+GGG - chr5_4:13553917-13553936 Msa0838970:CDS 40.0%
TTCTTCTTCATCAGGATCGG+AGG - chr5_4:13550547-13550566 Msa0838970:three_prime_UTR 45.0%
GGATTTGAGTCCTATCGGAA+AGG - chr5_4:13550581-13550600 Msa0838970:three_prime_UTR 45.0%
TTTGAGTCCTATCGGAAAGG+TGG - chr5_4:13550584-13550603 Msa0838970:three_prime_UTR 45.0%
ATGGTATCCACCTTTCCGAT+AGG + chr5_4:13550594-13550613 None:intergenic 45.0%
TAGAGTCGCTGATCAATTCG+CGG - chr5_4:13550619-13550638 Msa0838970:three_prime_UTR 45.0%
TTGCTCAGAGGAAACTTGGT+TGG - chr5_4:13550654-13550673 Msa0838970:three_prime_UTR 45.0%
TGCTCAGAGGAAACTTGGTT+GGG - chr5_4:13550655-13550674 Msa0838970:three_prime_UTR 45.0%
ATCATAAGCAAGCCAAACGG+TGG + chr5_4:13550690-13550709 None:intergenic 45.0%
!! AGCCTGTTTGTTTCTGTGGT+GGG + chr5_4:13551505-13551524 None:intergenic 45.0%
!! TAGCCTGTTTGTTTCTGTGG+TGG + chr5_4:13551506-13551525 None:intergenic 45.0%
TTAATCTTAGCAACAGGGCC+AGG + chr5_4:13551715-13551734 None:intergenic 45.0%
GAAACTCAAGGACCATGCAA+TGG + chr5_4:13552076-13552095 None:intergenic 45.0%
TGCATGGTCCTTGAGTTTCT+TGG - chr5_4:13552077-13552096 Msa0838970:CDS 45.0%
TCCGGATCTAAAAGGGTCTT+TGG + chr5_4:13552279-13552298 None:intergenic 45.0%
!! TTCTAAAGTTGGGGAGAGTC+CGG + chr5_4:13552297-13552316 None:intergenic 45.0%
! GACTCTCCCCAACTTTAGAA+CGG - chr5_4:13552297-13552316 Msa0838970:CDS 45.0%
!! CTCAGTCCGTTCTAAAGTTG+GGG + chr5_4:13552306-13552325 None:intergenic 45.0%
!! CCTCAGTCCGTTCTAAAGTT+GGG + chr5_4:13552307-13552326 None:intergenic 45.0%
!! CCAACTTTAGAACGGACTGA+GGG - chr5_4:13552305-13552324 Msa0838970:CDS 45.0%
ATTCCTCGTCTGTAGACATG+TGG - chr5_4:13552588-13552607 Msa0838970:CDS 45.0%
TAACCTTGTCCACCACCTTT+GGG + chr5_4:13552665-13552684 None:intergenic 45.0%
ATAACCTTGTCCACCACCTT+TGG + chr5_4:13552666-13552685 None:intergenic 45.0%
ACAAGGTTATAGCGAGGATG+AGG - chr5_4:13552676-13552695 Msa0838970:intron 45.0%
! TTTTATAGCCCATGTGAGGG+AGG - chr5_4:13553028-13553047 Msa0838970:intron 45.0%
GGATCATCTTGCCTTGATGA+TGG - chr5_4:13553364-13553383 Msa0838970:intron 45.0%
GGATTGCAGATTGCAATTGG+TGG - chr5_4:13553481-13553500 Msa0838970:intron 45.0%
AATTGGTGGAGCTCAATCCA+AGG - chr5_4:13553495-13553514 Msa0838970:intron 45.0%
ATGCCGGTCAAAGTAATCCT+TGG + chr5_4:13553515-13553534 None:intergenic 45.0%
AAGGATTACTTTGACCGGCA+TGG - chr5_4:13553514-13553533 Msa0838970:intron 45.0%
ACCGGCATGGTGATCTAAAA+AGG - chr5_4:13553527-13553546 Msa0838970:intron 45.0%
CAGAAAAACGACCAACTGCA+CGG - chr5_4:13553665-13553684 Msa0838970:intron 45.0%
ATTCATTGCAGTTCAGCCAG+GGG + chr5_4:13553705-13553724 None:intergenic 45.0%
GATTCATTGCAGTTCAGCCA+GGG + chr5_4:13553706-13553725 None:intergenic 45.0%
TGATTCATTGCAGTTCAGCC+AGG + chr5_4:13553707-13553726 None:intergenic 45.0%
CGGTCCAGATTCTTTGATTG+TGG + chr5_4:13553845-13553864 None:intergenic 45.0%
! CCGACTTTGTTTCGACCTAA+CGG + chr5_4:13553865-13553884 None:intergenic 45.0%
CCGTTAGGTCGAAACAAAGT+CGG - chr5_4:13553862-13553881 Msa0838970:CDS 45.0%
!!! TTAAATTTGATTTAATAATA+TGG - chr5_4:13552730-13552749 Msa0838970:intron 5.0%
AGGATCGGAGGAAGATGATG+AGG - chr5_4:13550559-13550578 Msa0838970:three_prime_UTR 50.0%
GGATCGGAGGAAGATGATGA+GGG - chr5_4:13550560-13550579 Msa0838970:three_prime_UTR 50.0%
GATCAGCGACTCTAACAGCA+TGG + chr5_4:13550613-13550632 None:intergenic 50.0%
AGAGTCGCTGATCAATTCGC+GGG - chr5_4:13550620-13550639 Msa0838970:three_prime_UTR 50.0%
! GTGGGAGGTATATTGCTCAG+AGG - chr5_4:13550642-13550661 Msa0838970:three_prime_UTR 50.0%
GCTCAGAGGAAACTTGGTTG+GGG - chr5_4:13550656-13550675 Msa0838970:three_prime_UTR 50.0%
TACCACATCCCAACGCAAGT+TGG - chr5_4:13551421-13551440 Msa0838970:intron 50.0%
AATCACGGCCAACTTGCGTT+GGG + chr5_4:13551432-13551451 None:intergenic 50.0%
AAATCACGGCCAACTTGCGT+TGG + chr5_4:13551433-13551452 None:intergenic 50.0%
!! CTGTTTGTTTCTGTGGTGGG+AGG + chr5_4:13551502-13551521 None:intergenic 50.0%
CTCCCACCACAGAAACAAAC+AGG - chr5_4:13551500-13551519 Msa0838970:intron 50.0%
AAGGGCAGCCTGAACAAACT+CGG + chr5_4:13551946-13551965 None:intergenic 50.0%
!! ATGCAATGGTGCTGCCCATT+TGG + chr5_4:13552062-13552081 None:intergenic 50.0%
AAATGGGCAGCACCATTGCA+TGG - chr5_4:13552061-13552080 Msa0838970:CDS 50.0%
GGGAGAGTCCGGATCTAAAA+GGG + chr5_4:13552286-13552305 None:intergenic 50.0%
!! CCCAACTTTAGAACGGACTG+AGG - chr5_4:13552304-13552323 Msa0838970:CDS 50.0%
!! CCCTCAGTCCGTTCTAAAGT+TGG + chr5_4:13552308-13552327 None:intergenic 50.0%
CGGACTGAGGGAAACACAAA+CGG - chr5_4:13552317-13552336 Msa0838970:CDS 50.0%
ACTGAGGGAAACACAAACGG+TGG - chr5_4:13552320-13552339 Msa0838970:CDS 50.0%
AGACCACATGTCTACAGACG+AGG + chr5_4:13552594-13552613 None:intergenic 50.0%
ATTGCTTTCGAGCTTGCCAC+TGG - chr5_4:13552623-13552642 Msa0838970:intron 50.0%
! TGGTGGACAAGGTTATAGCG+AGG - chr5_4:13552670-13552689 Msa0838970:intron 50.0%
!! GCCTTGATGATGGAACTCCT+CGG - chr5_4:13553374-13553393 Msa0838970:intron 50.0%
TCCGAGGAGTTCCATCATCA+AGG + chr5_4:13553378-13553397 None:intergenic 50.0%
!!! CGTGCAGTTGGTCGTTTTTC+TGG + chr5_4:13553667-13553686 None:intergenic 50.0%
TCGCTGATCAATTCGCGGGT+GGG - chr5_4:13550624-13550643 Msa0838970:three_prime_UTR 55.0%
GGGGTCAATTCTCCACCGTT+TGG - chr5_4:13550675-13550694 Msa0838970:three_prime_UTR 55.0%
! CAAACTCGGCCGCACTTTTC+TGG + chr5_4:13551932-13551951 None:intergenic 55.0%
! AAGTGCGGCCGAGTTTGTTC+AGG - chr5_4:13551935-13551954 Msa0838970:CDS 55.0%
GGGGAGAGTCCGGATCTAAA+AGG + chr5_4:13552287-13552306 None:intergenic 55.0%
!! ACACCCAAAGGTGGTGGACA+AGG - chr5_4:13552659-13552678 Msa0838970:intron 55.0%
AACTCCTCGGAAAGATGCCC+CGG - chr5_4:13553387-13553406 Msa0838970:intron 55.0%
! TGGGAGTGTACTCACCTTCC+GGG + chr5_4:13553408-13553427 None:intergenic 55.0%
! GTGGGAGTGTACTCACCTTC+CGG + chr5_4:13553409-13553428 None:intergenic 55.0%
! TGCAGGTATTGCCGTGCAGT+TGG + chr5_4:13553679-13553698 None:intergenic 55.0%
CAAATGCGGGTCTGACTGCA+AGG - chr5_4:13553930-13553949 Msa0838970:CDS 55.0%
GTCGCTGATCAATTCGCGGG+TGG - chr5_4:13550623-13550642 Msa0838970:three_prime_UTR 60.0%
CTGATCAATTCGCGGGTGGG+AGG - chr5_4:13550627-13550646 Msa0838970:three_prime_UTR 60.0%
GGCCAACTTGCGTTGGGATG+TGG + chr5_4:13551426-13551445 None:intergenic 60.0%
CGATGGGTCCCCATCAGCAA+TGG + chr5_4:13551991-13552010 None:intergenic 60.0%
! GGGAGTGTACTCACCTTCCG+GGG + chr5_4:13553407-13553426 None:intergenic 60.0%
GGCAATACCTGCAACACCCC+TGG - chr5_4:13553686-13553705 Msa0838970:intron 60.0%
!! AGTTCAGCCAGGGGTGTTGC+AGG + chr5_4:13553696-13553715 None:intergenic 60.0%
! CCTTCCGGGGCATCTTTCCG+AGG + chr5_4:13553394-13553413 None:intergenic 65.0%
CCTCGGAAAGATGCCCCGGA+AGG - chr5_4:13553391-13553410 Msa0838970:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 13550331 13554200 13550331 ID=Msa0838970;Name=Msa0838970
chr5_4 mRNA 13550331 13554200 13550331 ID=Msa0838970-mRNA-1;Parent=Msa0838970;Name=Msa0838970-mRNA-1;_AED=0.02;_eAED=0.02;_QI=208|1|1|1|1|1|4|390|446
chr5_4 exon 13550331 13551041 13550331 ID=Msa0838970-mRNA-1:exon:6033;Parent=Msa0838970-mRNA-1
chr5_4 exon 13551119 13551166 13551119 ID=Msa0838970-mRNA-1:exon:6032;Parent=Msa0838970-mRNA-1
chr5_4 exon 13551834 13552622 13551834 ID=Msa0838970-mRNA-1:exon:6031;Parent=Msa0838970-mRNA-1
chr5_4 exon 13553810 13554200 13553810 ID=Msa0838970-mRNA-1:exon:6030;Parent=Msa0838970-mRNA-1
chr5_4 five_prime_UTR 13553993 13554200 13553993 ID=Msa0838970-mRNA-1:five_prime_utr;Parent=Msa0838970-mRNA-1
chr5_4 CDS 13553810 13553992 13553810 ID=Msa0838970-mRNA-1:cds;Parent=Msa0838970-mRNA-1
chr5_4 CDS 13551834 13552622 13551834 ID=Msa0838970-mRNA-1:cds;Parent=Msa0838970-mRNA-1
chr5_4 CDS 13551119 13551166 13551119 ID=Msa0838970-mRNA-1:cds;Parent=Msa0838970-mRNA-1
chr5_4 CDS 13550721 13551041 13550721 ID=Msa0838970-mRNA-1:cds;Parent=Msa0838970-mRNA-1
chr5_4 three_prime_UTR 13550331 13550720 13550331 ID=Msa0838970-mRNA-1:three_prime_utr;Parent=Msa0838970-mRNA-1
Gene Sequence

>Msa0838970

ATGTCTTGTTCTTCTTCATCAGGATCGGAGGAAGATGATGAGGGATTTGAGTCCTATCGGAAAGGTGGATACCATGCTGTTAGAGTCGCTGATCAATTCGCGGGTGGGAGGTATATTGCTCAGAGGAAACTTGGTTGGGGTCAATTCTCCACCGTTTGGCTTGCTTATGATACTACCACCTCTTCATACGTTGCTCTCAAAATCCAGAAAAGTGCGGCCGAGTTTGTTCAGGCTGCCCTTCACGAGATCAACGTTCTTTCAACCATTGCTGATGGGGACCCATCGAATTCAAAGTTTGTTGTCCAATTGATTGATAACTTTAAGCACACAGGTCCAAATGGGCAGCACCATTGCATGGTCCTTGAGTTTCTTGGTGATAGCTTGCTTCGTTTGATCAAATACAGCCATTACAAAGGTCTTCCATTGAATAAAGTTAGAGAGATTTGTAAATACATTTTGATTGGTTTGGATTACTTGCATAGTGAACTTGGTATAATCCACACAGACTTAAAGCCTGAAAACATTCTTCTATTTTCAACTATTGATCCTTCCAAAGACCCTTTTAGATCCGGACTCTCCCCAACTTTAGAACGGACTGAGGGAAACACAAACGGTGGACTTACAAGTCTTATTGAGAAAAGGCTGAAGAGAAGAGCAAAGCGTGCAGTTGCTAAAATATCGGGAAGAACAACTTCAATTGAAGGAAGAGGAGAAGCTGCAAAGTCTAGTAGAAATATCGACGGGATTGATGTGAGATGCAAGATTGTCGATTTTGGAAATGCGTGTTGGGCTGATAACAAGTTTGCAGAAGAAATACAGACAAGACAATATAGAGCCCCTGAAGTTATACTGAAGTCTGGTTATTCCTCGTCTGTAGACATGTGGTCTTTTGCTTGCATTGCTTTCGAGCTTGCCACTGGAGATATGTTATTTACACCCAAAGGTGGTGGACAAGGTTATAGCGAGGATGAGGATCATCTTGCCTTGATGATGGAACTCCTCGGAAAGATGCCCCGGAAGATTGCAATTGGTGGAGCTCAATCCAAGGATTACTTTGACCGGCATGGTGATCTAAAAAGGATTCGTAGGCTAAAATTTTGTCCACTTGACAAATTGCTGATTGATAGATATAAATTTTCAGCGAATGATGCTCAAGAGTTTTCAGAATTTCTTTTGCCACTTTTTGATTTTGCGCCAGAAAAACGACCAACTGCACGGCAATACCTGCAACACCCCTGGCTGAACTGCAATGAATCAGCGCCAAATGAAATGAGAAATGAATCTACTGTGGAAAAGGTTAATGTTGGTATGAGCAACCTTCAAATCAAGGTAGGAAAGTGA
Protein sequence

>Msa0838970

MSCSSSSGSEEDDEGFESYRKGGYHAVRVADQFAGGRYIAQRKLGWGQFSTVWLAYDTTTSSYVALKIQKSAAEFVQAALHEINVLSTIADGDPSNSKFVVQLIDNFKHTGPNGQHHCMVLEFLGDSLLRLIKYSHYKGLPLNKVREICKYILIGLDYLHSELGIIHTDLKPENILLFSTIDPSKDPFRSGLSPTLERTEGNTNGGLTSLIEKRLKRRAKRAVAKISGRTTSIEGRGEAAKSSRNIDGIDVRCKIVDFGNACWADNKFAEEIQTRQYRAPEVILKSGYSSSVDMWSFACIAFELATGDMLFTPKGGGQGYSEDEDHLALMMELLGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFCPLDKLLIDRYKFSANDAQEFSEFLLPLFDFAPEKRPTARQYLQHPWLNCNESAPNEMRNESTVEKVNVGMSNLQIKVGK*