AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0803260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0803260 MtrunA17_Chr5g0411151 98.734 237 3 0 1 237 1 237 1.55e-180 494
Msa0803260 MtrunA17_Chr8g0366581 85.294 238 31 3 1 237 1 235 5.84e-142 396
Msa0803260 MtrunA17_Chr4g0040071 73.500 200 51 1 33 232 13 210 7.61e-110 315
Msa0803260 MtrunA17_Chr5g0395181 70.283 212 54 3 21 232 7 209 1.17e-107 309
Msa0803260 MtrunA17_Chr1g0179781 54.680 203 79 4 35 231 7 202 6.08e-72 218
Msa0803260 MtrunA17_Chr7g0265291 58.000 200 78 3 35 231 7 203 1.99e-70 214
Msa0803260 MtrunA17_Chr4g0020811 48.227 141 63 3 31 161 2 142 5.61e-42 140
Msa0803260 MtrunA17_Chr2g0308401 50.735 136 57 4 36 161 5 140 5.64e-42 140
Msa0803260 MtrunA17_Chr2g0320521 36.000 225 114 5 36 230 7 231 9.93e-41 139
Msa0803260 MtrunA17_Chr7g0230511 34.979 243 112 5 32 230 6 246 1.94e-38 134
Msa0803260 MtrunA17_Chr2g0297251 35.088 228 109 5 35 230 37 257 4.13e-37 130
Msa0803260 MtrunA17_Chr4g0065041 45.185 135 73 1 35 169 8 141 1.19e-35 127
Msa0803260 MtrunA17_Chr2g0320561 47.183 142 65 4 36 167 5 146 2.06e-35 126
Msa0803260 MtrunA17_Chr2g0320551 44.853 136 65 3 36 161 5 140 3.17e-34 120
Msa0803260 MtrunA17_Chr4g0052451 43.902 82 40 1 87 162 11 92 1.10e-19 80.9
Msa0803260 MtrunA17_Chr8g0392151 35.616 146 71 5 37 161 15 158 9.67e-18 79.3
Msa0803260 MtrunA17_Chr8g0386511 31.677 161 95 6 74 230 4 153 2.11e-15 71.2
Msa0803260 MtrunA17_Chr5g0434331 25.248 202 107 8 35 230 43 206 3.25e-13 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0803260 AT4G17900.1 74.249 233 52 4 1 231 1 227 4.12e-126 357
Msa0803260 AT4G17900.2 73.762 202 46 3 32 231 17 213 9.18e-107 307
Msa0803260 AT1G32700.1 72.093 215 55 2 25 237 2 213 4.28e-105 303
Msa0803260 AT1G32700.2 73.446 177 42 2 63 237 1 174 1.60e-82 244
Msa0803260 AT5G46710.1 53.191 235 95 6 1 230 1 225 1.48e-80 241
Msa0803260 AT1G21000.2 48.750 240 84 4 28 230 6 243 3.96e-76 230
Msa0803260 AT1G21000.1 48.750 240 84 4 28 230 9 246 4.51e-76 230
Msa0803260 AT5G46710.3 52.404 208 91 4 28 230 5 209 7.20e-73 221
Msa0803260 AT1G76590.1 49.130 230 81 2 35 230 18 245 5.97e-72 220
Msa0803260 AT5G46710.2 60.494 162 56 3 1 161 1 155 4.37e-68 207
Msa0803260 AT1G43000.2 47.907 215 100 2 28 230 9 223 6.32e-68 209
Msa0803260 AT1G43000.1 47.907 215 100 2 28 230 2 216 7.57e-68 208
Msa0803260 AT2G27930.1 45.673 208 81 5 35 232 4 189 3.70e-52 167
Msa0803260 AT2G27930.4 45.673 208 81 5 35 232 4 189 3.70e-52 167
Msa0803260 AT2G27930.3 54.745 137 52 2 35 161 4 140 2.29e-47 154
Msa0803260 AT2G27930.2 54.745 137 52 2 35 161 4 140 2.29e-47 154
Msa0803260 AT2G12646.3 46.667 135 71 1 35 169 3 136 1.60e-36 129
Msa0803260 AT2G12646.1 46.667 135 71 1 35 169 6 139 1.80e-36 129
Msa0803260 AT2G12646.2 46.667 135 71 1 35 169 6 139 1.80e-36 129
Msa0803260 AT1G31040.1 35.398 226 114 4 35 230 19 242 2.26e-36 129
Msa0803260 AT3G60670.1 45.455 132 71 1 30 161 2 132 1.50e-34 124
Msa0803260 AT2G27930.5 47.403 154 50 4 88 232 61 192 3.87e-34 121
Msa0803260 AT2G27930.6 47.403 154 50 4 88 232 61 192 3.87e-34 121
Msa0803260 AT2G01818.1 33.953 215 115 9 37 230 13 221 2.06e-21 89.4
Msa0803260 AT2G01818.2 33.766 154 80 7 94 230 9 157 3.26e-11 60.5

Find 87 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGAGAGAAGCAGCAAAAT+AGG 0.216121 5_3:+18309719 None:intergenic
TTAACAAAGATTAAGTAAAA+AGG 0.241207 5_3:-18307426 Msa0803260:three_prime_UTR
ACCATGATTCTCCTGTTCTT+TGG 0.256621 5_3:+18309541 None:intergenic
ATTAGTATTATATATATATC+AGG 0.262300 5_3:+18307861 None:intergenic
AAAATGTACTCCTTGGAAAA+AGG 0.303792 5_3:-18307547 Msa0803260:three_prime_UTR
TGGTATTCCCTTTCTTCTCT+TGG 0.322835 5_3:+18307958 None:intergenic
TGGTTTGATTTCTCTGACAC+TGG 0.330907 5_3:+18309561 None:intergenic
AAAGGTGCTATATCTAAATA+TGG 0.332200 5_3:-18307529 Msa0803260:three_prime_UTR
TCCTTCCGGTTCTGTTCTCT+TGG 0.350274 5_3:-18308643 Msa0803260:CDS
GGGAGGGAATGGGTTCTTGT+AGG 0.352977 5_3:+18309779 None:intergenic
AAGAAGAGTGAGGGAGGGAA+TGG 0.354907 5_3:+18309768 None:intergenic
GTAAATATTGGTTTAGTAAG+TGG 0.356276 5_3:-18307585 Msa0803260:three_prime_UTR
CAAAGACCACCGTTACATTC+AGG 0.356801 5_3:-18309209 Msa0803260:intron
TTCTGTAATTAACTGAAGTT+GGG 0.357223 5_3:+18307984 None:intergenic
GTGGTTGATGTTGTAAATAT+TGG 0.365343 5_3:-18307597 Msa0803260:three_prime_UTR
AATTGCCATTGGTGTGTGTT+TGG 0.376749 5_3:+18309600 None:intergenic
GTAGCCTTCTTGATTCCTTC+CGG 0.377067 5_3:-18308657 Msa0803260:CDS
TAAATATTGGTTTAGTAAGT+GGG 0.378766 5_3:-18307584 Msa0803260:three_prime_UTR
CAGAAACACTTGGACATTGC+TGG 0.382483 5_3:-18308784 Msa0803260:CDS
GTTCTGTAATTAACTGAAGT+TGG 0.401937 5_3:+18307983 None:intergenic
GAGAGAGAAGCAGCAAAATA+GGG 0.404029 5_3:+18309720 None:intergenic
CTTCATACCATGATGTGATA+AGG 0.416229 5_3:-18308819 Msa0803260:CDS
AAACTTAGGTATAATTACTT+TGG 0.428168 5_3:+18307621 None:intergenic
TGAATGTAATATGTATTGTT+TGG 0.429253 5_3:-18309275 Msa0803260:CDS
GGAGGGAATGGGTTCTTGTA+GGG 0.429300 5_3:+18309780 None:intergenic
CCTTGCACTGTTGATAATGT+AGG 0.430360 5_3:+18308753 None:intergenic
TATTGTTTGGATTGTATGAA+TGG 0.430470 5_3:-18309262 Msa0803260:CDS
CTAAGAACTTCCAGAAGAAA+AGG 0.442353 5_3:-18308117 Msa0803260:CDS
GTTTAGTAAGTGGGGAAGAA+AGG 0.442965 5_3:-18307575 Msa0803260:three_prime_UTR
GAGAAATCAAACCAAAGAAC+AGG 0.443596 5_3:-18309552 Msa0803260:CDS
ATACCACATAGAGCCCCATT+GGG 0.447453 5_3:-18307941 Msa0803260:CDS
GGAAATGAAAATGTACTCCT+TGG 0.450242 5_3:-18307554 Msa0803260:three_prime_UTR
GAATGGGTTCTTGTAGGGCT+TGG 0.453026 5_3:+18309785 None:intergenic
TTCATACCATGATGTGATAA+GGG 0.458976 5_3:-18308818 Msa0803260:CDS
AGAAGAGTGAGGGAGGGAAT+GGG 0.461813 5_3:+18309769 None:intergenic
CAACATCAACCACAAAACTT+AGG 0.464632 5_3:+18307607 None:intergenic
AATCCAAATAGAAGTGGAAA+AGG 0.476100 5_3:-18307770 Msa0803260:three_prime_UTR
GTTCTGTTCTCTTGGTTGCA+AGG 0.482122 5_3:-18308635 Msa0803260:intron
TGCAACCAAGAGAACAGAAC+CGG 0.486127 5_3:+18308638 None:intergenic
AGAACAGCCAAGAGAAGAAA+GGG 0.492152 5_3:-18307965 Msa0803260:CDS
CAGAACAGCCAAGAGAAGAA+AGG 0.499241 5_3:-18307966 Msa0803260:CDS
GAATGTAACGGTGGTCTTTG+TGG 0.500381 5_3:+18309212 None:intergenic
GAAGTGAAGAAGAGTGAGGG+AGG 0.516439 5_3:+18309762 None:intergenic
TTGAGAAGTGAAGAAGAGTG+AGG 0.521598 5_3:+18309758 None:intergenic
AATAGAAGTGGAAAAGGTTG+AGG 0.522137 5_3:-18307764 Msa0803260:three_prime_UTR
CATCTGTTATCATCATCATC+AGG 0.523367 5_3:+18309373 None:intergenic
TGAGAAGTGAAGAAGAGTGA+GGG 0.527189 5_3:+18309759 None:intergenic
CCTCAACCAAGGCCAGGAAA+AGG 0.529589 5_3:-18308709 Msa0803260:CDS
TTAGTATTATATATATATCA+GGG 0.534992 5_3:+18307862 None:intergenic
AATACCACATAGAGCCCCAT+TGG 0.536612 5_3:-18307942 Msa0803260:CDS
TTCAACAATGGTTTCAACCA+TGG 0.537430 5_3:+18309346 None:intergenic
GGGTTGTGTTCTTGAATGAA+AGG 0.538393 5_3:-18308732 Msa0803260:CDS
AAGTGAAGAAGAGTGAGGGA+GGG 0.543145 5_3:+18309763 None:intergenic
TGCACCACCAACTATTTCAC+AGG 0.545032 5_3:+18307722 None:intergenic
AAGAAAGCTTCTTTCAACAA+TGG 0.545716 5_3:+18309334 None:intergenic
CATTCACCCTTATCACATCA+TGG 0.546598 5_3:+18308812 None:intergenic
ACCAAAGAACAGGAGAATCA+TGG 0.546667 5_3:-18309542 Msa0803260:intron
TATGGTTTGAACAGATTAGG+AGG 0.550366 5_3:-18308843 Msa0803260:intron
GAATGTGAATTGCAGATTGT+GGG 0.552420 5_3:-18308145 Msa0803260:intron
AAAGACACCTGTGAAATAGT+TGG 0.556251 5_3:-18307729 Msa0803260:three_prime_UTR
GAAAGGCCTCAACCAAGGCC+AGG 0.557056 5_3:-18308715 Msa0803260:CDS
CCTACATTATCAACAGTGCA+AGG 0.564703 5_3:-18308753 Msa0803260:CDS
GTTGCTACTGTATGACTCCT+CGG 0.569431 5_3:+18308066 None:intergenic
AAGGAGACAATTAACAGCAA+TGG 0.585369 5_3:-18308098 Msa0803260:CDS
GTTCTTGTAGGGCTTGGAAG+CGG 0.586350 5_3:+18309791 None:intergenic
AAATATTGGTTTAGTAAGTG+GGG 0.593666 5_3:-18307583 Msa0803260:three_prime_UTR
TCAAACCAAACACACACCAA+TGG 0.622465 5_3:-18309605 Msa0803260:exon
AACAATGGTTTCAACCATGG+TGG 0.622605 5_3:+18309349 None:intergenic
GAATGAGATTCAGAAACACT+TGG 0.628209 5_3:-18308794 Msa0803260:CDS
AGCAATGGCATCAGATTCCG+AGG 0.633372 5_3:-18308083 Msa0803260:CDS
GAAGACAAACCTGAATGTAA+CGG 0.653422 5_3:+18309200 None:intergenic
TGAATGAAAGGCCTCAACCA+AGG 0.654295 5_3:-18308720 Msa0803260:CDS
AGAACCGGAAGGAATCAAGA+AGG 0.656588 5_3:+18308653 None:intergenic
CTACATTATCAACAGTGCAA+GGG 0.657965 5_3:-18308752 Msa0803260:CDS
ACCACATAGAGCCCCATTGG+GGG 0.661326 5_3:-18307939 Msa0803260:CDS
TACCACATAGAGCCCCATTG+GGG 0.680294 5_3:-18307940 Msa0803260:CDS
CCACATAGAGCCCCATTGGG+GGG 0.682285 5_3:-18307938 Msa0803260:CDS
GACACCTGTGAAATAGTTGG+TGG 0.682466 5_3:-18307726 Msa0803260:three_prime_UTR
ATGATAACAGATGGCCACCA+TGG 0.683499 5_3:-18309363 Msa0803260:CDS
ACCAAGAGAACAGAACCGGA+AGG 0.684862 5_3:+18308642 None:intergenic
TCTGTAATTAACTGAAGTTG+GGG 0.688523 5_3:+18307985 None:intergenic
AATGTGAATTGCAGATTGTG+GGG 0.690938 5_3:-18308144 Msa0803260:intron
TAGTATTATATATATATCAG+GGG 0.691788 5_3:+18307863 None:intergenic
CTGATGATGATGATAACAGA+TGG 0.692210 5_3:-18309372 Msa0803260:CDS
GACAAACCTGAATGTAACGG+TGG 0.716496 5_3:+18309203 None:intergenic
GCAAGACAGAGAGAACAGAG+AGG 0.742658 5_3:+18309238 None:intergenic
CTGTAATTAACTGAAGTTGG+GGG 0.746847 5_3:+18307986 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAGTATTATATATATATCA+GGG + chr5_3:18309346-18309365 None:intergenic 10.0%
!! ATTAGTATTATATATATATC+AGG + chr5_3:18309347-18309366 None:intergenic 10.0%
!! TTAGTATTATATATATATCA+GGG + chr5_3:18309346-18309365 None:intergenic 10.0%
!! ATTAGTATTATATATATATC+AGG + chr5_3:18309347-18309366 None:intergenic 10.0%
!!! TTTTGATTTGATTTTTGAAT+AGG - chr5_3:18307798-18307817 Msa0803260:three_prime_UTR 15.0%
!!! TTTGATTTGATTTTTGAATA+GGG - chr5_3:18307799-18307818 Msa0803260:three_prime_UTR 15.0%
!! TAGTATTATATATATATCAG+GGG + chr5_3:18309345-18309364 None:intergenic 15.0%
!! TTAACAAAGATTAAGTAAAA+AGG - chr5_3:18309779-18309798 Msa0803260:five_prime_UTR 15.0%
!! TAACAAAGATTAAGTAAAAA+GGG - chr5_3:18309780-18309799 Msa0803260:five_prime_UTR 15.0%
!!! TTTTGATTTGATTTTTGAAT+AGG - chr5_3:18307798-18307817 Msa0803260:three_prime_UTR 15.0%
!!! TTTGATTTGATTTTTGAATA+GGG - chr5_3:18307799-18307818 Msa0803260:three_prime_UTR 15.0%
!! TAGTATTATATATATATCAG+GGG + chr5_3:18309345-18309364 None:intergenic 15.0%
!! TTAACAAAGATTAAGTAAAA+AGG - chr5_3:18309779-18309798 Msa0803260:five_prime_UTR 15.0%
!! TAACAAAGATTAAGTAAAAA+GGG - chr5_3:18309780-18309799 Msa0803260:five_prime_UTR 15.0%
!! TGAATGTAATATGTATTGTT+TGG - chr5_3:18307930-18307949 Msa0803260:CDS 20.0%
!! AATTAAACATTAGACATCAA+TGG + chr5_3:18308318-18308337 None:intergenic 20.0%
!!! CTAAAGTTTGTTTTTTTGTA+TGG - chr5_3:18308344-18308363 Msa0803260:intron 20.0%
!! AATAATTGATGAGAATACAT+TGG + chr5_3:18308624-18308643 None:intergenic 20.0%
!!! CTAGTAAAGAAACTTTTTAT+GGG - chr5_3:18308829-18308848 Msa0803260:CDS 20.0%
!!! ATCCTTCAATTTAATCTTTT+TGG - chr5_3:18308913-18308932 Msa0803260:intron 20.0%
!! ATTAAAAAAACCATGAATGT+TGG - chr5_3:18308954-18308973 Msa0803260:intron 20.0%
!! TTAAAAAAACCATGAATGTT+GGG - chr5_3:18308955-18308974 Msa0803260:intron 20.0%
!! AAACTTAGGTATAATTACTT+TGG + chr5_3:18309587-18309606 None:intergenic 20.0%
!!! TAAATATTGGTTTAGTAAGT+GGG - chr5_3:18309621-18309640 Msa0803260:five_prime_UTR 20.0%
!! TGAATGTAATATGTATTGTT+TGG - chr5_3:18307930-18307949 Msa0803260:CDS 20.0%
!! AATTAAACATTAGACATCAA+TGG + chr5_3:18308318-18308337 None:intergenic 20.0%
!!! CTAAAGTTTGTTTTTTTGTA+TGG - chr5_3:18308344-18308363 Msa0803260:intron 20.0%
!! AATAATTGATGAGAATACAT+TGG + chr5_3:18308624-18308643 None:intergenic 20.0%
!!! CTAGTAAAGAAACTTTTTAT+GGG - chr5_3:18308829-18308848 Msa0803260:CDS 20.0%
!!! ATCCTTCAATTTAATCTTTT+TGG - chr5_3:18308913-18308932 Msa0803260:intron 20.0%
!! ATTAAAAAAACCATGAATGT+TGG - chr5_3:18308954-18308973 Msa0803260:intron 20.0%
!! TTAAAAAAACCATGAATGTT+GGG - chr5_3:18308955-18308974 Msa0803260:intron 20.0%
!! AAACTTAGGTATAATTACTT+TGG + chr5_3:18309587-18309606 None:intergenic 20.0%
!!! TAAATATTGGTTTAGTAAGT+GGG - chr5_3:18309621-18309640 Msa0803260:five_prime_UTR 20.0%
! TATTGTTTGGATTGTATGAA+TGG - chr5_3:18307943-18307962 Msa0803260:CDS 25.0%
!! CTTATAATCTGACACATTTT+TGG - chr5_3:18308073-18308092 Msa0803260:CDS 25.0%
!! TTATAGATTCGTTCTTTTTC+TGG - chr5_3:18308108-18308127 Msa0803260:CDS 25.0%
!! TATAGATTCGTTCTTTTTCT+GGG - chr5_3:18308109-18308128 Msa0803260:CDS 25.0%
!! ATCTAAGTGTTATTCTGAAA+TGG - chr5_3:18308174-18308193 Msa0803260:intron 25.0%
!!! TCTAAGTGTTATTCTGAAAT+GGG - chr5_3:18308175-18308194 Msa0803260:intron 25.0%
!! GCTAGTAAAGAAACTTTTTA+TGG - chr5_3:18308828-18308847 Msa0803260:CDS 25.0%
! TGCCAAAAAGATTAAATTGA+AGG + chr5_3:18308918-18308937 None:intergenic 25.0%
!!! AGTTATGATTTTGACAAAGA+TGG + chr5_3:18309002-18309021 None:intergenic 25.0%
! TTCTGTAATTAACTGAAGTT+GGG + chr5_3:18309224-18309243 None:intergenic 25.0%
!! GTAATTATACCTAAGTTTTG+TGG - chr5_3:18309589-18309608 Msa0803260:CDS 25.0%
!!! GTAAATATTGGTTTAGTAAG+TGG - chr5_3:18309620-18309639 Msa0803260:five_prime_UTR 25.0%
!!! AAATATTGGTTTAGTAAGTG+GGG - chr5_3:18309622-18309641 Msa0803260:five_prime_UTR 25.0%
!!! AAAGGTGCTATATCTAAATA+TGG - chr5_3:18309676-18309695 Msa0803260:intron 25.0%
!! GTTTTTAAATGTCGAACAAT+GGG + chr5_3:18309759-18309778 None:intergenic 25.0%
!! AGTTTTTAAATGTCGAACAA+TGG + chr5_3:18309760-18309779 None:intergenic 25.0%
! TATTGTTTGGATTGTATGAA+TGG - chr5_3:18307943-18307962 Msa0803260:CDS 25.0%
!! CTTATAATCTGACACATTTT+TGG - chr5_3:18308073-18308092 Msa0803260:CDS 25.0%
!! TTATAGATTCGTTCTTTTTC+TGG - chr5_3:18308108-18308127 Msa0803260:CDS 25.0%
!! TATAGATTCGTTCTTTTTCT+GGG - chr5_3:18308109-18308128 Msa0803260:CDS 25.0%
!! ATCTAAGTGTTATTCTGAAA+TGG - chr5_3:18308174-18308193 Msa0803260:intron 25.0%
!!! TCTAAGTGTTATTCTGAAAT+GGG - chr5_3:18308175-18308194 Msa0803260:intron 25.0%
!! GCTAGTAAAGAAACTTTTTA+TGG - chr5_3:18308828-18308847 Msa0803260:CDS 25.0%
! TGCCAAAAAGATTAAATTGA+AGG + chr5_3:18308918-18308937 None:intergenic 25.0%
!!! AGTTATGATTTTGACAAAGA+TGG + chr5_3:18309002-18309021 None:intergenic 25.0%
! TTCTGTAATTAACTGAAGTT+GGG + chr5_3:18309224-18309243 None:intergenic 25.0%
!! GTAATTATACCTAAGTTTTG+TGG - chr5_3:18309589-18309608 Msa0803260:CDS 25.0%
!!! GTAAATATTGGTTTAGTAAG+TGG - chr5_3:18309620-18309639 Msa0803260:five_prime_UTR 25.0%
!!! AAATATTGGTTTAGTAAGTG+GGG - chr5_3:18309622-18309641 Msa0803260:five_prime_UTR 25.0%
!!! AAAGGTGCTATATCTAAATA+TGG - chr5_3:18309676-18309695 Msa0803260:intron 25.0%
!! GTTTTTAAATGTCGAACAAT+GGG + chr5_3:18309759-18309778 None:intergenic 25.0%
!! AGTTTTTAAATGTCGAACAA+TGG + chr5_3:18309760-18309779 None:intergenic 25.0%
GTGAAAAAGTGAAAGATGTT+TGG + chr5_3:18307571-18307590 None:intergenic 30.0%
! TCTTGATTTTCAATTGCCAT+TGG + chr5_3:18307619-18307638 None:intergenic 30.0%
ATCTAGCATTAGATTCTTGA+TGG - chr5_3:18307694-18307713 Msa0803260:three_prime_UTR 30.0%
TCTAGCATTAGATTCTTGAT+GGG - chr5_3:18307695-18307714 Msa0803260:three_prime_UTR 30.0%
AAGAAAGCTTCTTTCAACAA+TGG + chr5_3:18307874-18307893 None:intergenic 30.0%
AATAGCTGAAAATCAGCAAA+AGG + chr5_3:18308218-18308237 None:intergenic 30.0%
GCACATTAATTAGACATCAA+TGG + chr5_3:18308268-18308287 None:intergenic 30.0%
TTGTATGGTTTGAACAGATT+AGG - chr5_3:18308359-18308378 Msa0803260:intron 30.0%
TTCATACCATGATGTGATAA+GGG - chr5_3:18308387-18308406 Msa0803260:intron 30.0%
AATTGATGAGAATACATTGG+TGG + chr5_3:18308621-18308640 None:intergenic 30.0%
! TGCACTATAACAATGTTTTG+TGG - chr5_3:18308716-18308735 Msa0803260:CDS 30.0%
! ACTATAACAATGTTTTGTGG+CGG - chr5_3:18308719-18308738 Msa0803260:CDS 30.0%
! TTATGGGTTAAAATGAGTTG+AGG - chr5_3:18308845-18308864 Msa0803260:intron 30.0%
!!! TGAGGTTGACTTTTTCATAA+TGG - chr5_3:18308863-18308882 Msa0803260:intron 30.0%
!!! GAGGTTGACTTTTTCATAAT+GGG - chr5_3:18308864-18308883 Msa0803260:intron 30.0%
TATTCAAATCCCAACATTCA+TGG + chr5_3:18308967-18308986 None:intergenic 30.0%
! TTAATTGTCTCCTTTTCTTC+TGG + chr5_3:18309101-18309120 None:intergenic 30.0%
!! GAACTTTGATTTTCTTCTGA+CGG + chr5_3:18309176-18309195 None:intergenic 30.0%
TCTGTAATTAACTGAAGTTG+GGG + chr5_3:18309223-18309242 None:intergenic 30.0%
GTTCTGTAATTAACTGAAGT+TGG + chr5_3:18309225-18309244 None:intergenic 30.0%
AGCAAAAATCCAAATAGAAG+TGG - chr5_3:18309429-18309448 Msa0803260:intron 30.0%
AATCCAAATAGAAGTGGAAA+AGG - chr5_3:18309435-18309454 Msa0803260:intron 30.0%
GTGCATTTAGCAAAAAGAAT+GGG - chr5_3:18309501-18309520 Msa0803260:intron 30.0%
TGCATTTAGCAAAAAGAATG+GGG - chr5_3:18309502-18309521 Msa0803260:intron 30.0%
! GTGGTTGATGTTGTAAATAT+TGG - chr5_3:18309608-18309627 Msa0803260:exon 30.0%
AAAATGTACTCCTTGGAAAA+AGG - chr5_3:18309658-18309677 Msa0803260:five_prime_UTR 30.0%
CAAAGATTAAGTAAAAAGGG+TGG - chr5_3:18309783-18309802 Msa0803260:five_prime_UTR 30.0%
GTGAAAAAGTGAAAGATGTT+TGG + chr5_3:18307571-18307590 None:intergenic 30.0%
! TCTTGATTTTCAATTGCCAT+TGG + chr5_3:18307619-18307638 None:intergenic 30.0%
ATCTAGCATTAGATTCTTGA+TGG - chr5_3:18307694-18307713 Msa0803260:three_prime_UTR 30.0%
TCTAGCATTAGATTCTTGAT+GGG - chr5_3:18307695-18307714 Msa0803260:three_prime_UTR 30.0%
AAGAAAGCTTCTTTCAACAA+TGG + chr5_3:18307874-18307893 None:intergenic 30.0%
AATAGCTGAAAATCAGCAAA+AGG + chr5_3:18308218-18308237 None:intergenic 30.0%
GCACATTAATTAGACATCAA+TGG + chr5_3:18308268-18308287 None:intergenic 30.0%
TTGTATGGTTTGAACAGATT+AGG - chr5_3:18308359-18308378 Msa0803260:intron 30.0%
TTCATACCATGATGTGATAA+GGG - chr5_3:18308387-18308406 Msa0803260:intron 30.0%
AATTGATGAGAATACATTGG+TGG + chr5_3:18308621-18308640 None:intergenic 30.0%
! TGCACTATAACAATGTTTTG+TGG - chr5_3:18308716-18308735 Msa0803260:CDS 30.0%
! ACTATAACAATGTTTTGTGG+CGG - chr5_3:18308719-18308738 Msa0803260:CDS 30.0%
! TTATGGGTTAAAATGAGTTG+AGG - chr5_3:18308845-18308864 Msa0803260:intron 30.0%
!!! TGAGGTTGACTTTTTCATAA+TGG - chr5_3:18308863-18308882 Msa0803260:intron 30.0%
!!! GAGGTTGACTTTTTCATAAT+GGG - chr5_3:18308864-18308883 Msa0803260:intron 30.0%
TATTCAAATCCCAACATTCA+TGG + chr5_3:18308967-18308986 None:intergenic 30.0%
! TTAATTGTCTCCTTTTCTTC+TGG + chr5_3:18309101-18309120 None:intergenic 30.0%
!! GAACTTTGATTTTCTTCTGA+CGG + chr5_3:18309176-18309195 None:intergenic 30.0%
TCTGTAATTAACTGAAGTTG+GGG + chr5_3:18309223-18309242 None:intergenic 30.0%
GTTCTGTAATTAACTGAAGT+TGG + chr5_3:18309225-18309244 None:intergenic 30.0%
AGCAAAAATCCAAATAGAAG+TGG - chr5_3:18309429-18309448 Msa0803260:intron 30.0%
AATCCAAATAGAAGTGGAAA+AGG - chr5_3:18309435-18309454 Msa0803260:intron 30.0%
GTGCATTTAGCAAAAAGAAT+GGG - chr5_3:18309501-18309520 Msa0803260:intron 30.0%
TGCATTTAGCAAAAAGAATG+GGG - chr5_3:18309502-18309521 Msa0803260:intron 30.0%
! GTGGTTGATGTTGTAAATAT+TGG - chr5_3:18309608-18309627 Msa0803260:exon 30.0%
AAAATGTACTCCTTGGAAAA+AGG - chr5_3:18309658-18309677 Msa0803260:five_prime_UTR 30.0%
CAAAGATTAAGTAAAAAGGG+TGG - chr5_3:18309783-18309802 Msa0803260:five_prime_UTR 30.0%
GAGAAATCAAACCAAAGAAC+AGG - chr5_3:18307653-18307672 Msa0803260:three_prime_UTR 35.0%
! TTGATTTTTGAATAGGGTGC+TGG - chr5_3:18307805-18307824 Msa0803260:three_prime_UTR 35.0%
CATCTGTTATCATCATCATC+AGG + chr5_3:18307835-18307854 None:intergenic 35.0%
! CTGATGATGATGATAACAGA+TGG - chr5_3:18307833-18307852 Msa0803260:three_prime_UTR 35.0%
TTCAACAATGGTTTCAACCA+TGG + chr5_3:18307862-18307881 None:intergenic 35.0%
GAAGACAAACCTGAATGTAA+CGG + chr5_3:18308008-18308027 None:intergenic 35.0%
!!! TCTGACACATTTTTGGTTCA+TGG - chr5_3:18308080-18308099 Msa0803260:CDS 35.0%
!!! CTGACACATTTTTGGTTCAT+GGG - chr5_3:18308081-18308100 Msa0803260:CDS 35.0%
TATGGTTTGAACAGATTAGG+AGG - chr5_3:18308362-18308381 Msa0803260:intron 35.0%
CTTCATACCATGATGTGATA+AGG - chr5_3:18308386-18308405 Msa0803260:intron 35.0%
GAATGAGATTCAGAAACACT+TGG - chr5_3:18308411-18308430 Msa0803260:intron 35.0%
CTACATTATCAACAGTGCAA+GGG - chr5_3:18308453-18308472 Msa0803260:intron 35.0%
CTGAACAAATCGCTATTGTT+CGG - chr5_3:18308656-18308675 Msa0803260:CDS 35.0%
TGAATGTGAATTGCAGATTG+TGG - chr5_3:18309059-18309078 Msa0803260:intron 35.0%
GAATGTGAATTGCAGATTGT+GGG - chr5_3:18309060-18309079 Msa0803260:intron 35.0%
AATGTGAATTGCAGATTGTG+GGG - chr5_3:18309061-18309080 Msa0803260:intron 35.0%
CTAAGAACTTCCAGAAGAAA+AGG - chr5_3:18309088-18309107 Msa0803260:intron 35.0%
AAGGAGACAATTAACAGCAA+TGG - chr5_3:18309107-18309126 Msa0803260:intron 35.0%
CTGTAATTAACTGAAGTTGG+GGG + chr5_3:18309222-18309241 None:intergenic 35.0%
! CAACCTTTTCCACTTCTATT+TGG + chr5_3:18309441-18309460 None:intergenic 35.0%
AATAGAAGTGGAAAAGGTTG+AGG - chr5_3:18309441-18309460 Msa0803260:intron 35.0%
AAAGACACCTGTGAAATAGT+TGG - chr5_3:18309476-18309495 Msa0803260:intron 35.0%
GGTGCATTTAGCAAAAAGAA+TGG - chr5_3:18309500-18309519 Msa0803260:intron 35.0%
CAACATCAACCACAAAACTT+AGG + chr5_3:18309601-18309620 None:intergenic 35.0%
GGAAATGAAAATGTACTCCT+TGG - chr5_3:18309651-18309670 Msa0803260:five_prime_UTR 35.0%
! AGATATAGCACCTTTTTCCA+AGG + chr5_3:18309671-18309690 None:intergenic 35.0%
GAGAAATCAAACCAAAGAAC+AGG - chr5_3:18307653-18307672 Msa0803260:three_prime_UTR 35.0%
! TTGATTTTTGAATAGGGTGC+TGG - chr5_3:18307805-18307824 Msa0803260:three_prime_UTR 35.0%
CATCTGTTATCATCATCATC+AGG + chr5_3:18307835-18307854 None:intergenic 35.0%
! CTGATGATGATGATAACAGA+TGG - chr5_3:18307833-18307852 Msa0803260:three_prime_UTR 35.0%
TTCAACAATGGTTTCAACCA+TGG + chr5_3:18307862-18307881 None:intergenic 35.0%
GAAGACAAACCTGAATGTAA+CGG + chr5_3:18308008-18308027 None:intergenic 35.0%
!!! TCTGACACATTTTTGGTTCA+TGG - chr5_3:18308080-18308099 Msa0803260:CDS 35.0%
!!! CTGACACATTTTTGGTTCAT+GGG - chr5_3:18308081-18308100 Msa0803260:CDS 35.0%
TATGGTTTGAACAGATTAGG+AGG - chr5_3:18308362-18308381 Msa0803260:intron 35.0%
CTTCATACCATGATGTGATA+AGG - chr5_3:18308386-18308405 Msa0803260:intron 35.0%
GAATGAGATTCAGAAACACT+TGG - chr5_3:18308411-18308430 Msa0803260:intron 35.0%
CTACATTATCAACAGTGCAA+GGG - chr5_3:18308453-18308472 Msa0803260:intron 35.0%
CTGAACAAATCGCTATTGTT+CGG - chr5_3:18308656-18308675 Msa0803260:CDS 35.0%
TGAATGTGAATTGCAGATTG+TGG - chr5_3:18309059-18309078 Msa0803260:intron 35.0%
GAATGTGAATTGCAGATTGT+GGG - chr5_3:18309060-18309079 Msa0803260:intron 35.0%
AATGTGAATTGCAGATTGTG+GGG - chr5_3:18309061-18309080 Msa0803260:intron 35.0%
CTAAGAACTTCCAGAAGAAA+AGG - chr5_3:18309088-18309107 Msa0803260:intron 35.0%
AAGGAGACAATTAACAGCAA+TGG - chr5_3:18309107-18309126 Msa0803260:intron 35.0%
CTGTAATTAACTGAAGTTGG+GGG + chr5_3:18309222-18309241 None:intergenic 35.0%
! CAACCTTTTCCACTTCTATT+TGG + chr5_3:18309441-18309460 None:intergenic 35.0%
AATAGAAGTGGAAAAGGTTG+AGG - chr5_3:18309441-18309460 Msa0803260:intron 35.0%
AAAGACACCTGTGAAATAGT+TGG - chr5_3:18309476-18309495 Msa0803260:intron 35.0%
GGTGCATTTAGCAAAAAGAA+TGG - chr5_3:18309500-18309519 Msa0803260:intron 35.0%
CAACATCAACCACAAAACTT+AGG + chr5_3:18309601-18309620 None:intergenic 35.0%
GGAAATGAAAATGTACTCCT+TGG - chr5_3:18309651-18309670 Msa0803260:five_prime_UTR 35.0%
! AGATATAGCACCTTTTTCCA+AGG + chr5_3:18309671-18309690 None:intergenic 35.0%
TGAGAAGTGAAGAAGAGTGA+GGG + chr5_3:18307449-18307468 None:intergenic 40.0%
TTGAGAAGTGAAGAAGAGTG+AGG + chr5_3:18307450-18307469 None:intergenic 40.0%
GAGAGAGAAGCAGCAAAATA+GGG + chr5_3:18307488-18307507 None:intergenic 40.0%
AGAGAGAGAAGCAGCAAAAT+AGG + chr5_3:18307489-18307508 None:intergenic 40.0%
TCAAACCAAACACACACCAA+TGG - chr5_3:18307600-18307619 Msa0803260:three_prime_UTR 40.0%
AATTGCCATTGGTGTGTGTT+TGG + chr5_3:18307608-18307627 None:intergenic 40.0%
! TGGTTTGATTTCTCTGACAC+TGG + chr5_3:18307647-18307666 None:intergenic 40.0%
ACCAAAGAACAGGAGAATCA+TGG - chr5_3:18307663-18307682 Msa0803260:three_prime_UTR 40.0%
ACCATGATTCTCCTGTTCTT+TGG + chr5_3:18307667-18307686 None:intergenic 40.0%
!!! ATTTTTGAATAGGGTGCTGG+AGG - chr5_3:18307808-18307827 Msa0803260:three_prime_UTR 40.0%
AACAATGGTTTCAACCATGG+TGG + chr5_3:18307859-18307878 None:intergenic 40.0%
CTCAGCACAGAAAACAAAAG+TGG + chr5_3:18308154-18308173 None:intergenic 40.0%
CATTCACCCTTATCACATCA+TGG + chr5_3:18308396-18308415 None:intergenic 40.0%
!! CCTTGCACTGTTGATAATGT+AGG + chr5_3:18308455-18308474 None:intergenic 40.0%
CCTACATTATCAACAGTGCA+AGG - chr5_3:18308452-18308471 Msa0803260:intron 40.0%
GGGTTGTGTTCTTGAATGAA+AGG - chr5_3:18308473-18308492 Msa0803260:intron 40.0%
GCTATAACAATGTTGTGTGG+CGG + chr5_3:18308762-18308781 None:intergenic 40.0%
TGCGCTATAACAATGTTGTG+TGG + chr5_3:18308765-18308784 None:intergenic 40.0%
CAAGAGTCTCGTGAATCAAA+TGG + chr5_3:18308892-18308911 None:intergenic 40.0%
TAATTAACTGAAGTTGGGGG+TGG + chr5_3:18309219-18309238 None:intergenic 40.0%
AGAACAGCCAAGAGAAGAAA+GGG - chr5_3:18309240-18309259 Msa0803260:CDS 40.0%
TGGTATTCCCTTTCTTCTCT+TGG + chr5_3:18309250-18309269 None:intergenic 40.0%
!!! TACTTGTTTTGCTACACGCA+CGG + chr5_3:18309537-18309556 None:intergenic 40.0%
GTTTAGTAAGTGGGGAAGAA+AGG - chr5_3:18309630-18309649 Msa0803260:five_prime_UTR 40.0%
TGAGAAGTGAAGAAGAGTGA+GGG + chr5_3:18307449-18307468 None:intergenic 40.0%
TTGAGAAGTGAAGAAGAGTG+AGG + chr5_3:18307450-18307469 None:intergenic 40.0%
GAGAGAGAAGCAGCAAAATA+GGG + chr5_3:18307488-18307507 None:intergenic 40.0%
AGAGAGAGAAGCAGCAAAAT+AGG + chr5_3:18307489-18307508 None:intergenic 40.0%
TCAAACCAAACACACACCAA+TGG - chr5_3:18307600-18307619 Msa0803260:three_prime_UTR 40.0%
AATTGCCATTGGTGTGTGTT+TGG + chr5_3:18307608-18307627 None:intergenic 40.0%
! TGGTTTGATTTCTCTGACAC+TGG + chr5_3:18307647-18307666 None:intergenic 40.0%
ACCAAAGAACAGGAGAATCA+TGG - chr5_3:18307663-18307682 Msa0803260:three_prime_UTR 40.0%
ACCATGATTCTCCTGTTCTT+TGG + chr5_3:18307667-18307686 None:intergenic 40.0%
!!! ATTTTTGAATAGGGTGCTGG+AGG - chr5_3:18307808-18307827 Msa0803260:three_prime_UTR 40.0%
AACAATGGTTTCAACCATGG+TGG + chr5_3:18307859-18307878 None:intergenic 40.0%
CTCAGCACAGAAAACAAAAG+TGG + chr5_3:18308154-18308173 None:intergenic 40.0%
CATTCACCCTTATCACATCA+TGG + chr5_3:18308396-18308415 None:intergenic 40.0%
!! CCTTGCACTGTTGATAATGT+AGG + chr5_3:18308455-18308474 None:intergenic 40.0%
CCTACATTATCAACAGTGCA+AGG - chr5_3:18308452-18308471 Msa0803260:intron 40.0%
GGGTTGTGTTCTTGAATGAA+AGG - chr5_3:18308473-18308492 Msa0803260:intron 40.0%
GCTATAACAATGTTGTGTGG+CGG + chr5_3:18308762-18308781 None:intergenic 40.0%
TGCGCTATAACAATGTTGTG+TGG + chr5_3:18308765-18308784 None:intergenic 40.0%
CAAGAGTCTCGTGAATCAAA+TGG + chr5_3:18308892-18308911 None:intergenic 40.0%
TAATTAACTGAAGTTGGGGG+TGG + chr5_3:18309219-18309238 None:intergenic 40.0%
AGAACAGCCAAGAGAAGAAA+GGG - chr5_3:18309240-18309259 Msa0803260:CDS 40.0%
TGGTATTCCCTTTCTTCTCT+TGG + chr5_3:18309250-18309269 None:intergenic 40.0%
!!! TACTTGTTTTGCTACACGCA+CGG + chr5_3:18309537-18309556 None:intergenic 40.0%
GTTTAGTAAGTGGGGAAGAA+AGG - chr5_3:18309630-18309649 Msa0803260:five_prime_UTR 40.0%
AAGTGAAGAAGAGTGAGGGA+GGG + chr5_3:18307445-18307464 None:intergenic 45.0%
ATGATAACAGATGGCCACCA+TGG - chr5_3:18307842-18307861 Msa0803260:three_prime_UTR 45.0%
GAATGTAACGGTGGTCTTTG+TGG + chr5_3:18307996-18308015 None:intergenic 45.0%
CAAAGACCACCGTTACATTC+AGG - chr5_3:18307996-18308015 Msa0803260:CDS 45.0%
GACAAACCTGAATGTAACGG+TGG + chr5_3:18308005-18308024 None:intergenic 45.0%
CAGAAACACTTGGACATTGC+TGG - chr5_3:18308421-18308440 Msa0803260:intron 45.0%
TGAATGAAAGGCCTCAACCA+AGG - chr5_3:18308485-18308504 Msa0803260:intron 45.0%
! GTGTTTGTGACACCTTTTCC+TGG + chr5_3:18308511-18308530 None:intergenic 45.0%
GTAGCCTTCTTGATTCCTTC+CGG - chr5_3:18308548-18308567 Msa0803260:intron 45.0%
AGAACCGGAAGGAATCAAGA+AGG + chr5_3:18308555-18308574 None:intergenic 45.0%
TGCAACCAAGAGAACAGAAC+CGG + chr5_3:18308570-18308589 None:intergenic 45.0%
GTTCTGTTCTCTTGGTTGCA+AGG - chr5_3:18308570-18308589 Msa0803260:intron 45.0%
CGCAGCTATAGTGAGAACAT+TGG - chr5_3:18308781-18308800 Msa0803260:CDS 45.0%
GTTGCTACTGTATGACTCCT+CGG + chr5_3:18309142-18309161 None:intergenic 45.0%
CAGAACAGCCAAGAGAAGAA+AGG - chr5_3:18309239-18309258 Msa0803260:CDS 45.0%
AATACCACATAGAGCCCCAT+TGG - chr5_3:18309263-18309282 Msa0803260:CDS 45.0%
ATACCACATAGAGCCCCATT+GGG - chr5_3:18309264-18309283 Msa0803260:CDS 45.0%
GACACCTGTGAAATAGTTGG+TGG - chr5_3:18309479-18309498 Msa0803260:intron 45.0%
TGCACCACCAACTATTTCAC+AGG + chr5_3:18309486-18309505 None:intergenic 45.0%
!!! ACTTGTTTTGCTACACGCAC+GGG + chr5_3:18309536-18309555 None:intergenic 45.0%
AAGTGAAGAAGAGTGAGGGA+GGG + chr5_3:18307445-18307464 None:intergenic 45.0%
ATGATAACAGATGGCCACCA+TGG - chr5_3:18307842-18307861 Msa0803260:three_prime_UTR 45.0%
GAATGTAACGGTGGTCTTTG+TGG + chr5_3:18307996-18308015 None:intergenic 45.0%
CAAAGACCACCGTTACATTC+AGG - chr5_3:18307996-18308015 Msa0803260:CDS 45.0%
GACAAACCTGAATGTAACGG+TGG + chr5_3:18308005-18308024 None:intergenic 45.0%
CAGAAACACTTGGACATTGC+TGG - chr5_3:18308421-18308440 Msa0803260:intron 45.0%
TGAATGAAAGGCCTCAACCA+AGG - chr5_3:18308485-18308504 Msa0803260:intron 45.0%
! GTGTTTGTGACACCTTTTCC+TGG + chr5_3:18308511-18308530 None:intergenic 45.0%
GTAGCCTTCTTGATTCCTTC+CGG - chr5_3:18308548-18308567 Msa0803260:intron 45.0%
AGAACCGGAAGGAATCAAGA+AGG + chr5_3:18308555-18308574 None:intergenic 45.0%
TGCAACCAAGAGAACAGAAC+CGG + chr5_3:18308570-18308589 None:intergenic 45.0%
GTTCTGTTCTCTTGGTTGCA+AGG - chr5_3:18308570-18308589 Msa0803260:intron 45.0%
CGCAGCTATAGTGAGAACAT+TGG - chr5_3:18308781-18308800 Msa0803260:CDS 45.0%
GTTGCTACTGTATGACTCCT+CGG + chr5_3:18309142-18309161 None:intergenic 45.0%
CAGAACAGCCAAGAGAAGAA+AGG - chr5_3:18309239-18309258 Msa0803260:CDS 45.0%
AATACCACATAGAGCCCCAT+TGG - chr5_3:18309263-18309282 Msa0803260:CDS 45.0%
ATACCACATAGAGCCCCATT+GGG - chr5_3:18309264-18309283 Msa0803260:CDS 45.0%
GACACCTGTGAAATAGTTGG+TGG - chr5_3:18309479-18309498 Msa0803260:intron 45.0%
TGCACCACCAACTATTTCAC+AGG + chr5_3:18309486-18309505 None:intergenic 45.0%
!!! ACTTGTTTTGCTACACGCAC+GGG + chr5_3:18309536-18309555 None:intergenic 45.0%
GTTCTTGTAGGGCTTGGAAG+CGG + chr5_3:18307417-18307436 None:intergenic 50.0%
! GAATGGGTTCTTGTAGGGCT+TGG + chr5_3:18307423-18307442 None:intergenic 50.0%
! GGAGGGAATGGGTTCTTGTA+GGG + chr5_3:18307428-18307447 None:intergenic 50.0%
AGAAGAGTGAGGGAGGGAAT+GGG + chr5_3:18307439-18307458 None:intergenic 50.0%
AAGAAGAGTGAGGGAGGGAA+TGG + chr5_3:18307440-18307459 None:intergenic 50.0%
GAAGTGAAGAAGAGTGAGGG+AGG + chr5_3:18307446-18307465 None:intergenic 50.0%
GCAAGACAGAGAGAACAGAG+AGG + chr5_3:18307970-18307989 None:intergenic 50.0%
TCCTTCCGGTTCTGTTCTCT+TGG - chr5_3:18308562-18308581 Msa0803260:intron 50.0%
ACCAAGAGAACAGAACCGGA+AGG + chr5_3:18308566-18308585 None:intergenic 50.0%
AGCAATGGCATCAGATTCCG+AGG - chr5_3:18309122-18309141 Msa0803260:intron 50.0%
TACCACATAGAGCCCCATTG+GGG - chr5_3:18309265-18309284 Msa0803260:CDS 50.0%
TAGATCAAGTCCCCCCAATG+GGG + chr5_3:18309280-18309299 None:intergenic 50.0%
CTAGATCAAGTCCCCCCAAT+GGG + chr5_3:18309281-18309300 None:intergenic 50.0%
TCTAGATCAAGTCCCCCCAA+TGG + chr5_3:18309282-18309301 None:intergenic 50.0%
GTTCTTGTAGGGCTTGGAAG+CGG + chr5_3:18307417-18307436 None:intergenic 50.0%
! GAATGGGTTCTTGTAGGGCT+TGG + chr5_3:18307423-18307442 None:intergenic 50.0%
! GGAGGGAATGGGTTCTTGTA+GGG + chr5_3:18307428-18307447 None:intergenic 50.0%
AGAAGAGTGAGGGAGGGAAT+GGG + chr5_3:18307439-18307458 None:intergenic 50.0%
AAGAAGAGTGAGGGAGGGAA+TGG + chr5_3:18307440-18307459 None:intergenic 50.0%
GAAGTGAAGAAGAGTGAGGG+AGG + chr5_3:18307446-18307465 None:intergenic 50.0%
GCAAGACAGAGAGAACAGAG+AGG + chr5_3:18307970-18307989 None:intergenic 50.0%
TCCTTCCGGTTCTGTTCTCT+TGG - chr5_3:18308562-18308581 Msa0803260:intron 50.0%
ACCAAGAGAACAGAACCGGA+AGG + chr5_3:18308566-18308585 None:intergenic 50.0%
AGCAATGGCATCAGATTCCG+AGG - chr5_3:18309122-18309141 Msa0803260:intron 50.0%
TACCACATAGAGCCCCATTG+GGG - chr5_3:18309265-18309284 Msa0803260:CDS 50.0%
TAGATCAAGTCCCCCCAATG+GGG + chr5_3:18309280-18309299 None:intergenic 50.0%
CTAGATCAAGTCCCCCCAAT+GGG + chr5_3:18309281-18309300 None:intergenic 50.0%
TCTAGATCAAGTCCCCCCAA+TGG + chr5_3:18309282-18309301 None:intergenic 50.0%
! GGGAGGGAATGGGTTCTTGT+AGG + chr5_3:18307429-18307448 None:intergenic 55.0%
!!! CCTTTTCCTGGCCTTGGTTG+AGG + chr5_3:18308499-18308518 None:intergenic 55.0%
CCTCAACCAAGGCCAGGAAA+AGG - chr5_3:18308496-18308515 Msa0803260:intron 55.0%
! GTGACACCTTTTCCTGGCCT+TGG + chr5_3:18308505-18308524 None:intergenic 55.0%
GAAGTTGGGGGTGGTGTAGA+TGG + chr5_3:18309210-18309229 None:intergenic 55.0%
ACCACATAGAGCCCCATTGG+GGG - chr5_3:18309266-18309285 Msa0803260:CDS 55.0%
! GGGAGGGAATGGGTTCTTGT+AGG + chr5_3:18307429-18307448 None:intergenic 55.0%
!!! CCTTTTCCTGGCCTTGGTTG+AGG + chr5_3:18308499-18308518 None:intergenic 55.0%
CCTCAACCAAGGCCAGGAAA+AGG - chr5_3:18308496-18308515 Msa0803260:intron 55.0%
! GTGACACCTTTTCCTGGCCT+TGG + chr5_3:18308505-18308524 None:intergenic 55.0%
GAAGTTGGGGGTGGTGTAGA+TGG + chr5_3:18309210-18309229 None:intergenic 55.0%
ACCACATAGAGCCCCATTGG+GGG - chr5_3:18309266-18309285 Msa0803260:CDS 55.0%
GAAAGGCCTCAACCAAGGCC+AGG - chr5_3:18308490-18308509 Msa0803260:intron 60.0%
CCACATAGAGCCCCATTGGG+GGG - chr5_3:18309267-18309286 Msa0803260:CDS 60.0%
GAAAGGCCTCAACCAAGGCC+AGG - chr5_3:18308490-18308509 Msa0803260:intron 60.0%
CCACATAGAGCCCCATTGGG+GGG - chr5_3:18309267-18309286 Msa0803260:CDS 60.0%
CCCCCCAATGGGGCTCTATG+TGG + chr5_3:18309270-18309289 None:intergenic 65.0%
CCCCCCAATGGGGCTCTATG+TGG + chr5_3:18309270-18309289 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 18307396 18309831 18307396 ID=Msa0803260;Name=Msa0803260
chr5_3 mRNA 18307396 18309831 18307396 ID=Msa0803260-mRNA-1;Parent=Msa0803260;Name=Msa0803260-mRNA-1;_AED=0.09;_eAED=0.09;_QI=191|1|1|1|0.75|0.6|5|523|237
chr5_3 exon 18307396 18308152 18307396 ID=Msa0803260-mRNA-1:exon:7507;Parent=Msa0803260-mRNA-1
chr5_3 exon 18308636 18308851 18308636 ID=Msa0803260-mRNA-1:exon:7506;Parent=Msa0803260-mRNA-1
chr5_3 exon 18309210 18309407 18309210 ID=Msa0803260-mRNA-1:exon:7505;Parent=Msa0803260-mRNA-1
chr5_3 exon 18309543 18309684 18309543 ID=Msa0803260-mRNA-1:exon:7504;Parent=Msa0803260-mRNA-1
chr5_3 exon 18309717 18309831 18309717 ID=Msa0803260-mRNA-1:exon:7503;Parent=Msa0803260-mRNA-1
chr5_3 five_prime_UTR 18309717 18309831 18309717 ID=Msa0803260-mRNA-1:five_prime_utr;Parent=Msa0803260-mRNA-1
chr5_3 five_prime_UTR 18309609 18309684 18309609 ID=Msa0803260-mRNA-1:five_prime_utr;Parent=Msa0803260-mRNA-1
chr5_3 CDS 18309543 18309608 18309543 ID=Msa0803260-mRNA-1:cds;Parent=Msa0803260-mRNA-1
chr5_3 CDS 18309210 18309407 18309210 ID=Msa0803260-mRNA-1:cds;Parent=Msa0803260-mRNA-1
chr5_3 CDS 18308636 18308851 18308636 ID=Msa0803260-mRNA-1:cds;Parent=Msa0803260-mRNA-1
chr5_3 CDS 18307919 18308152 18307919 ID=Msa0803260-mRNA-1:cds;Parent=Msa0803260-mRNA-1
chr5_3 three_prime_UTR 18307396 18307918 18307396 ID=Msa0803260-mRNA-1:three_prime_utr;Parent=Msa0803260-mRNA-1
Gene Sequence

>Msa0803260

ATGGCAATTGAAAATCAAGAAAACACCAGTGTCAGAGAAATCAAACCAAAGAACAGGAGAATCATGGGTGCTGGAGGACCTGATGATGATGATAACAGATGGCCACCATGGTTGAAACCATTGTTGAAAGAAGCTTTCTTTGTTCAATGCAAGATACATGCTGATTCTCACAAGAGTGAATGTAATATGTATTGTTTGGATTGTATGAATGGTCCTCTCTGTTCTCTCTGTCTTGCTTACCACAAAGACCACCGTTACATTCAGATTAGGAGGTCTTCATACCATGATGTGATAAGGGTGAATGAGATTCAGAAACACTTGGACATTGCTGGTGTTCAAACCTACATTATCAACAGTGCAAGGGTTGTGTTCTTGAATGAAAGGCCTCAACCAAGGCCAGGAAAAGGTGTCACAAACACTTGTGAAGTTTGTGAGCGTAGCCTTCTTGATTCCTTCCGGTTCTGTTCTCTTGGTTGCAAGATTGTGGGGACATCTAAGAACTTCCAGAAGAAAAGGAGACAATTAACAGCAATGGCATCAGATTCCGAGGAGTCATACAGTAGCAACAACATTCATAGCCGTCAGAAGAAAATCAAAGTTCAAAGCTTTACACCATCTACACCACCCCCAACTTCAGTTAATTACAGAACAGCCAAGAGAAGAAAGGGAATACCACATAGAGCCCCATTGGGGGGACTTGATCTAGATTATTAG
Protein sequence

>Msa0803260

MAIENQENTSVREIKPKNRRIMGAGGPDDDDNRWPPWLKPLLKEAFFVQCKIHADSHKSECNMYCLDCMNGPLCSLCLAYHKDHRYIQIRRSSYHDVIRVNEIQKHLDIAGVQTYIINSARVVFLNERPQPRPGKGVTNTCEVCERSLLDSFRFCSLGCKIVGTSKNFQKKRRQLTAMASDSEESYSSNNIHSRQKKIKVQSFTPSTPPPTSVNYRTAKRRKGIPHRAPLGGLDLDY*