AlfalfaGEDB | Msa0760980

M. sativa cultivar zhongmu-4 / Msa0760980

KEGG: -
GO: -
PFAM: PF04640.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0760980	sp\|Q1G3Q4\|RITF1_ARATH	46.667	135	71	1	35	169	6	139	1.88e-35	129

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0760980	G7KDS6	98.312	237	4	0	1	237	1	237	4.12e-175	490

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TFs/TRs:

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Gene ID	Type	Classification
Msa0760980	TF	PLATZ

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0760980	Msa0803260	0.832429	9.500188e-56	-8.615850e-47
Msa0760980	Msa0841610	0.862809	3.896565e-64	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0760980	MtrunA17_Chr5g0411151	98.312	237	4	0	1	237	1	237	7.94e-179	490
Msa0760980	MtrunA17_Chr8g0366581	84.874	238	32	3	1	237	1	235	2.74e-140	392
Msa0760980	MtrunA17_Chr4g0040071	73.000	200	52	1	33	232	13	210	5.04e-108	310
Msa0760980	MtrunA17_Chr5g0395181	69.811	212	55	3	21	232	7	209	2.05e-106	306
Msa0760980	MtrunA17_Chr1g0179781	54.680	203	79	4	35	231	7	202	7.16e-72	218
Msa0760980	MtrunA17_Chr7g0265291	58.000	200	78	3	35	231	7	203	2.32e-70	214
Msa0760980	MtrunA17_Chr2g0308401	50.735	136	57	4	36	161	5	140	5.64e-42	140
Msa0760980	MtrunA17_Chr4g0020811	48.227	141	63	3	31	161	2	142	5.80e-42	140
Msa0760980	MtrunA17_Chr2g0320521	35.622	233	104	6	36	230	7	231	1.30e-40	139
Msa0760980	MtrunA17_Chr7g0230511	34.979	243	112	5	32	230	6	246	2.86e-38	133

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0760980	AT4G17900.1	74.678	233	51	4	1	231	1	227	2.07e-127	360
Msa0760980	AT4G17900.2	74.257	202	45	3	32	231	17	213	4.37e-108	310
Msa0760980	AT1G32700.1	72.093	215	55	2	25	237	2	213	1.25e-104	301
Msa0760980	AT1G32700.2	73.446	177	42	2	63	237	1	174	4.47e-82	243
Msa0760980	AT5G46710.1	53.191	235	95	6	1	230	1	225	3.21e-80	240
Msa0760980	AT1G21000.1	48.750	240	84	4	28	230	9	246	3.07e-75	228
Msa0760980	AT1G21000.2	48.750	240	84	4	28	230	6	243	3.28e-75	228
Msa0760980	AT5G46710.3	52.404	208	91	4	28	230	5	209	1.82e-72	220
Msa0760980	AT1G76590.1	49.130	230	81	2	35	230	18	245	6.14e-71	217
Msa0760980	AT5G46710.2	60.494	162	56	3	1	161	1	155	5.49e-68	207

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Find 81 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTACTCCTTGGAAAA+AGG	0.303792	5_2:-17910375	Msa0760980:three_prime_UTR
AAACTTACGTATAATTACTT+TGG	0.408129	5_2:+17910449	None:intergenic
AAAGACACCTGTGAAATAGT+TGG	0.556251	5_2:-17910557	Msa0760980:three_prime_UTR
AAAGGTGCTATATCTAAATA+TGG	0.332200	5_2:-17910357	Msa0760980:three_prime_UTR
AAATATTGGTTTAGTAAGTG+GGG	0.593666	5_2:-17910411	Msa0760980:three_prime_UTR
AACAATGGTTTCAACCATGG+TGG	0.622605	5_2:+17912201	None:intergenic
AAGAAAGCTTCTTTCAACAA+TGG	0.545716	5_2:+17912186	None:intergenic
AAGAAGAGTGAGGGAGGGAA+TGG	0.371714	5_2:+17912614	None:intergenic
AAGGAGACAATTAACAGCAA+TGG	0.585369	5_2:-17910928	Msa0760980:CDS
AAGTAAAGAAGAGTGAGGGA+GGG	0.545559	5_2:+17912609	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTGAAAAAGTGAAAGATGTT+TGG	+	chr5_2:17910393-17910412	None:intergenic	30.0%
AAGAAAGCTTCTTTCAACAA+TGG	+	chr5_2:17910696-17910715	None:intergenic	30.0%
AATAGCTGAAAATCAGCAAA+AGG	+	chr5_2:17911041-17911060	None:intergenic	30.0%
GCACATTAATTAGACATCAA+TGG	+	chr5_2:17911091-17911110	None:intergenic	30.0%
TTGTATGGTTTGAACAGATT+AGG	-	chr5_2:17911182-17911201	Msa0760980:intron	30.0%
TTCATACCATGATGTGATAA+GGG	-	chr5_2:17911210-17911229	Msa0760980:intron	30.0%
AGGTAATTTACCTTACTTCT+TGG	-	chr5_2:17911413-17911432	Msa0760980:intron	30.0%
AATTGATGAGAATACATTGG+TGG	+	chr5_2:17911445-17911464	None:intergenic	30.0%
TTCTGCAATTAACTGAAGTT+GGG	+	chr5_2:17912068-17912087	None:intergenic	30.0%
AGCAAAAATCCAAATAGAAG+TGG	-	chr5_2:17912275-17912294	Msa0760980:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	17910224	17912677	17910224	ID=Msa0760980;Name=Msa0760980
chr5_2	mRNA	17910224	17912677	17910224	ID=Msa0760980-mRNA-1;Parent=Msa0760980;Name=Msa0760980-mRNA-1;_AED=0.08;_eAED=0.08;_QI=191\|1\|1\|1\|0.75\|0.6\|5\|525\|237
chr5_2	exon	17910224	17910982	17910224	ID=Msa0760980-mRNA-1:exon:7822;Parent=Msa0760980-mRNA-1
chr5_2	exon	17911487	17911702	17911487	ID=Msa0760980-mRNA-1:exon:7821;Parent=Msa0760980-mRNA-1
chr5_2	exon	17912062	17912259	17912062	ID=Msa0760980-mRNA-1:exon:7820;Parent=Msa0760980-mRNA-1
chr5_2	exon	17912395	17912536	17912395	ID=Msa0760980-mRNA-1:exon:7819;Parent=Msa0760980-mRNA-1
chr5_2	exon	17912563	17912677	17912563	ID=Msa0760980-mRNA-1:exon:7818;Parent=Msa0760980-mRNA-1
chr5_2	five_prime_UTR	17912563	17912677	17912563	ID=Msa0760980-mRNA-1:five_prime_utr;Parent=Msa0760980-mRNA-1
chr5_2	five_prime_UTR	17912461	17912536	17912461	ID=Msa0760980-mRNA-1:five_prime_utr;Parent=Msa0760980-mRNA-1
chr5_2	CDS	17912395	17912460	17912395	ID=Msa0760980-mRNA-1:cds;Parent=Msa0760980-mRNA-1
chr5_2	CDS	17912062	17912259	17912062	ID=Msa0760980-mRNA-1:cds;Parent=Msa0760980-mRNA-1
chr5_2	CDS	17911487	17911702	17911487	ID=Msa0760980-mRNA-1:cds;Parent=Msa0760980-mRNA-1
chr5_2	CDS	17910749	17910982	17910749	ID=Msa0760980-mRNA-1:cds;Parent=Msa0760980-mRNA-1
chr5_2	three_prime_UTR	17910224	17910748	17910224	ID=Msa0760980-mRNA-1:three_prime_utr;Parent=Msa0760980-mRNA-1

Gene Sequence

>Msa0760980

ATGGCAATTGAAAATCAAGAAAACACCAGTGTCAGAGAAATCAAACCAAAGAACAGGAGAATCATGGGTGCTGGAGGACCTGATGATGATGATAACAGATGGCCACCATGGTTGAAACCATTGTTGAAAGAAGCTTTCTTTGTTCAATGCAAGATACATGCTGATTCTCACAAGAGTGAATGTAATATGTATTGTTTGGATTGTATGAATGGTCCTCTCTGTTCTCTCTGTCTTGCTTACCACAAAGACCACCGTTACATTCAGATTAGGAGGTCTTCATACCATGATGTGATAAGGGTGAATGAGATTCAGAAACACTTGGACATTGCTGGTGTTCAAACCTACATTATCAACAGTGCAAGGGTTGTGTTTTTGAATGAAAGGCCTCAACCAAGGCCAGGAAAAGGTGTCACAAACACTTGTGAAGTTTGTGAGCGTAGCCTTCTTGATTCCTTCCGGTTCTGTTCTCTTGGTTGCAAGATTGTGGGGACATCTAAGAACTTCCAGAAGAAAAGGAGACAATTAACAGCAATGGCATCAGATTCTGAGGAGTCATACAGTAGCAACAACATTCATAGCCGTCAGAAGAAAATCAAAGTTCAAAGCTTTACACCATCTACACCACCCCCAACTTCAGTTAATTGCAGAACAGCCAAGAGAAGAAAGGGAATACCACATAGAGCCCCATTGGGGGGACTTGATCTAGATTATTAG

Protein sequence

>Msa0760980

MAIENQENTSVREIKPKNRRIMGAGGPDDDDNRWPPWLKPLLKEAFFVQCKIHADSHKSECNMYCLDCMNGPLCSLCLAYHKDHRYIQIRRSSYHDVIRVNEIQKHLDIAGVQTYIINSARVVFLNERPQPRPGKGVTNTCEVCERSLLDSFRFCSLGCKIVGTSKNFQKKRRQLTAMASDSEESYSSNNIHSRQKKIKVQSFTPSTPPPTSVNCRTAKRRKGIPHRAPLGGLDLDY*