Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0803770 | G7L3K3 | 86.871 | 457 | 37 | 6 | 1 | 451 | 1 | 440 | 0.0 | 678 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0720730 | Msa0803770 | 0.833773 | 4.398104e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0803770 | MtrunA17_Chr7g0247241 | 86.871 | 457 | 37 | 6 | 1 | 451 | 1 | 440 | 0.0 | 678 |
| Msa0803770 | MtrunA17_Chr5g0411521 | 83.114 | 456 | 47 | 5 | 1 | 451 | 46 | 476 | 0.0 | 677 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0803770 | AT3G53440.2 | 40.000 | 280 | 134 | 5 | 168 | 440 | 260 | 512 | 1.71e-47 | 171 |
| Msa0803770 | AT3G53440.1 | 40.000 | 280 | 134 | 5 | 168 | 440 | 260 | 512 | 1.71e-47 | 171 |
Find 117 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTCAATCAATTAAGATTT+AGG | 0.116714 | 5_3:+19115653 | Msa0803770:CDS |
| ATGGTTGTAGATTTGGGTTT+TGG | 0.189381 | 5_3:-19112441 | None:intergenic |
| CGGAACTTGATCGCTCAAAT+TGG | 0.204301 | 5_3:-19112499 | None:intergenic |
| CTTGATATGGTTGTAGATTT+GGG | 0.206905 | 5_3:-19112447 | None:intergenic |
| CAAAACCTAGTCCTCATTTC+TGG | 0.236228 | 5_3:+19112895 | Msa0803770:CDS |
| GAGATTGAAGGTGGAGTAGA+AGG | 0.245379 | 5_3:+19112717 | Msa0803770:CDS |
| TCCAAACTTATATTGTAATA+TGG | 0.260857 | 5_3:+19116078 | Msa0803770:three_prime_UTR |
| TCTTGATATGGTTGTAGATT+TGG | 0.268733 | 5_3:-19112448 | None:intergenic |
| TGTCAATCAATTAAGATTTA+GGG | 0.297311 | 5_3:+19115654 | Msa0803770:CDS |
| CTGGAAGAACGTTTCGAAAC+TGG | 0.311757 | 5_3:+19112914 | Msa0803770:CDS |
| TTCTGAGTAACAATGCTCTT+TGG | 0.320344 | 5_3:-19115325 | None:intergenic |
| TGTCGCCCATGAAATTGATT+TGG | 0.322977 | 5_3:-19115822 | None:intergenic |
| GCCATATTACAATATAAGTT+TGG | 0.323126 | 5_3:-19116079 | None:intergenic |
| AAGTCTCTTTCTAGATTTAG+TGG | 0.343248 | 5_3:+19115556 | Msa0803770:CDS |
| ATCTTTCATTGCAAATTTGT+AGG | 0.343532 | 5_3:-19115507 | None:intergenic |
| GATGTTAAAGTGAGTGAATT+TGG | 0.353800 | 5_3:+19112558 | Msa0803770:CDS |
| GCAATCCCAAATCAATTTCA+TGG | 0.362655 | 5_3:+19115816 | Msa0803770:CDS |
| GTCGCCCATGAAATTGATTT+GGG | 0.364937 | 5_3:-19115821 | None:intergenic |
| AAAGTTGATCAAAATCATAA+AGG | 0.382393 | 5_3:+19115379 | Msa0803770:CDS |
| CAAAATCTGTTGCAGGTACC+TGG | 0.382661 | 5_3:+19115124 | Msa0803770:intron |
| TCTAGATTTAGTGGCTCATC+AGG | 0.392797 | 5_3:+19115565 | Msa0803770:CDS |
| AAGTTGATCAAAATCATAAA+GGG | 0.398649 | 5_3:+19115380 | Msa0803770:CDS |
| GGTGATCTTCGTGGGGTGCC+AGG | 0.414139 | 5_3:-19112378 | None:intergenic |
| AATTAAGATTTAGGGACCTT+AGG | 0.417162 | 5_3:+19115662 | Msa0803770:CDS |
| AGATGTAATGCATTTAGGTT+GGG | 0.423719 | 5_3:+19116116 | Msa0803770:three_prime_UTR |
| TGGTTGAAGGTGGTAGAAAA+AGG | 0.424066 | 5_3:+19112646 | Msa0803770:CDS |
| ACGACAGTGTGGTTTCTGTT+TGG | 0.431043 | 5_3:-19112348 | None:intergenic |
| TTTCAAGCTAAGTACCTAGA+TGG | 0.431700 | 5_3:-19116174 | None:intergenic |
| TATCAAGATCCAAAACCGTT+AGG | 0.434211 | 5_3:+19112463 | Msa0803770:CDS |
| GTGGGTATGAGCAGTTTACT+TGG | 0.440203 | 5_3:-19115268 | None:intergenic |
| GGAGAAGAGCAGCATCTTCA+AGG | 0.442712 | 5_3:+19115683 | Msa0803770:CDS |
| AAGGTGGAGTAGAAGGGAAA+AGG | 0.444952 | 5_3:+19112724 | Msa0803770:CDS |
| CAGATGTAATGCATTTAGGT+TGG | 0.446321 | 5_3:+19116115 | Msa0803770:three_prime_UTR |
| GGAACTTGATCGCTCAAATT+GGG | 0.454245 | 5_3:-19112498 | None:intergenic |
| GTGGACTAAGGAACAAGAAT+TGG | 0.455229 | 5_3:+19112848 | Msa0803770:CDS |
| AATGCTACATCTACAAAACT+TGG | 0.459493 | 5_3:-19116010 | None:intergenic |
| AAGCAACAAAAGGAAAATCA+AGG | 0.462563 | 5_3:+19115481 | Msa0803770:CDS |
| TAATTGTCTTGTATCCATCT+AGG | 0.469668 | 5_3:+19116160 | Msa0803770:three_prime_UTR |
| CACACTGTCGTTTACCCACC+TGG | 0.474091 | 5_3:+19112360 | Msa0803770:CDS |
| ATTTCCATTCCTTCAATCAC+AGG | 0.475959 | 5_3:+19112238 | Msa0803770:five_prime_UTR |
| CAAACCTGTGATTGAAGGAA+TGG | 0.480595 | 5_3:-19112242 | None:intergenic |
| CTCAATGTCAGCCTCGATCA+AGG | 0.480704 | 5_3:+19115200 | Msa0803770:CDS |
| GAAACGTTCTTCCAGAAATG+AGG | 0.491137 | 5_3:-19112906 | None:intergenic |
| ATCAAGATCCAAAACCGTTA+GGG | 0.491826 | 5_3:+19112464 | Msa0803770:CDS |
| CGATGGTGGTGGTGAAATAG+TGG | 0.492076 | 5_3:+19112752 | Msa0803770:CDS |
| TAAGTCTCGGTGATCTTCGT+GGG | 0.492341 | 5_3:-19112386 | None:intergenic |
| GAATTCAAACCTGTGATTGA+AGG | 0.498763 | 5_3:-19112247 | None:intergenic |
| GAGATATTGAGAATTGATGA+AGG | 0.499568 | 5_3:-19115246 | None:intergenic |
| AAGATGCTGCTCTTCTCCTA+AGG | 0.500545 | 5_3:-19115678 | None:intergenic |
| ATCTTCGTGGGGTGCCAGGT+GGG | 0.501330 | 5_3:-19112374 | None:intergenic |
| TAAAGCAGCAAAAGTTGCAT+TGG | 0.501844 | 5_3:+19115759 | Msa0803770:CDS |
| AGAAGAAAGCACGGTGGTGA+TGG | 0.502654 | 5_3:+19112669 | Msa0803770:CDS |
| TTGTACTCCAAAGCAACAAA+AGG | 0.506093 | 5_3:+19115471 | Msa0803770:CDS |
| ATTTCCATTCCTACAATCAC+AGG | 0.507886 | 5_3:+19112194 | None:intergenic |
| GAAAAGTGAAGAAAAGTAGC+GGG | 0.509699 | 5_3:+19112616 | Msa0803770:CDS |
| TTGCCAACCTTCTTTCCAGT+GGG | 0.512778 | 5_3:-19115286 | None:intergenic |
| GCTCATACCCACTGGAAAGA+AGG | 0.513723 | 5_3:+19115279 | Msa0803770:CDS |
| CAATCTTGTTTAGACTTCCC+AGG | 0.515115 | 5_3:-19115142 | None:intergenic |
| GATCTTCGTGGGGTGCCAGG+TGG | 0.516975 | 5_3:-19112375 | None:intergenic |
| TTTACTTGCTTTAGCACAGG+TGG | 0.520137 | 5_3:-19115607 | None:intergenic |
| ATAAGTCTCGGTGATCTTCG+TGG | 0.528137 | 5_3:-19112387 | None:intergenic |
| AAGAAAGAAGAGATTGAAGG+TGG | 0.529397 | 5_3:+19112708 | Msa0803770:CDS |
| AATAGTGGAAGAGTTGAGGA+AGG | 0.535399 | 5_3:+19112767 | Msa0803770:CDS |
| CGCGGTGGTGAAGTTGCACA+AGG | 0.536260 | 5_3:+19112825 | Msa0803770:CDS |
| TTTGCCAACCTTCTTTCCAG+TGG | 0.543425 | 5_3:-19115287 | None:intergenic |
| AGGAAGAAAGAAGAGATTGA+AGG | 0.543684 | 5_3:+19112705 | Msa0803770:CDS |
| AAAAGGAAGCACGATGGTGG+TGG | 0.545412 | 5_3:+19112741 | Msa0803770:CDS |
| TCTGTAGCTGGAGAAGGAAA+AGG | 0.546804 | 5_3:+19115715 | Msa0803770:CDS |
| GTGAAATAGTGGAAGAGTTG+AGG | 0.549461 | 5_3:+19112763 | Msa0803770:CDS |
| AGATTGAAGGTGGAGTAGAA+GGG | 0.553424 | 5_3:+19112718 | Msa0803770:CDS |
| ATCAAGTTCCGTCGCTTAGA+CGG | 0.558259 | 5_3:+19112511 | Msa0803770:CDS |
| GCACGGTGGTGATGGAATTG+AGG | 0.558489 | 5_3:+19112677 | Msa0803770:CDS |
| TTCTTCCAGAAATGAGGACT+AGG | 0.561243 | 5_3:-19112900 | None:intergenic |
| CAATCCCAAATCAATTTCAT+GGG | 0.561849 | 5_3:+19115817 | Msa0803770:CDS |
| GGAAAAGTGAAGAAAAGTAG+CGG | 0.562912 | 5_3:+19112615 | Msa0803770:CDS |
| ATTAGCTCGAGAAAAGCCTA+TGG | 0.566073 | 5_3:-19115898 | None:intergenic |
| AAGTTGAATGTGGTGTGAAA+AGG | 0.575392 | 5_3:+19112793 | Msa0803770:CDS |
| GTGATGGAATTGAGGAAGGG+AGG | 0.575565 | 5_3:+19112685 | Msa0803770:CDS |
| ATTGCCTTTGCCCTTGATCG+AGG | 0.578198 | 5_3:-19115211 | None:intergenic |
| ATGCTACATCTACAAAACTT+GGG | 0.581912 | 5_3:-19116009 | None:intergenic |
| GGTGGTGATGGAATTGAGGA+AGG | 0.582281 | 5_3:+19112681 | Msa0803770:CDS |
| ATACCCACTGGAAAGAAGGT+TGG | 0.583152 | 5_3:+19115283 | Msa0803770:CDS |
| GGAGTACAAAGTTCTTGACT+AGG | 0.585184 | 5_3:-19115457 | None:intergenic |
| AGTTGCACAAGGGTGGACTA+AGG | 0.587210 | 5_3:+19112836 | Msa0803770:CDS |
| AAAATCTGTTGCAGGTACCT+GGG | 0.591061 | 5_3:+19115125 | Msa0803770:intron |
| AGTAAACTGCTCATACCCAC+TGG | 0.591066 | 5_3:+19115271 | Msa0803770:CDS |
| AAATATACAAAGATCACAGT+AGG | 0.592908 | 5_3:+19116194 | Msa0803770:three_prime_UTR |
| GAGAAGAGCAGCATCTTCAA+GGG | 0.593581 | 5_3:+19115684 | Msa0803770:CDS |
| AAAAGTGAAGAAAAGTAGCG+GGG | 0.597079 | 5_3:+19112617 | Msa0803770:CDS |
| AGATATTGAGAATTGATGAA+GGG | 0.597555 | 5_3:-19115245 | None:intergenic |
| TCAATGTCAGCCTCGATCAA+GGG | 0.602031 | 5_3:+19115201 | Msa0803770:CDS |
| GTGGTGAAGTTGCACAAGGG+TGG | 0.604638 | 5_3:+19112829 | Msa0803770:CDS |
| AGCAACAAAAGGAAAATCAA+GGG | 0.616741 | 5_3:+19115482 | Msa0803770:CDS |
| CTTGATCGAGGCTGACATTG+AGG | 0.617140 | 5_3:-19115199 | None:intergenic |
| TCAGCCTCGATCAAGGGCAA+AGG | 0.617327 | 5_3:+19115207 | Msa0803770:CDS |
| AAAGTGAAGAAAAGTAGCGG+GGG | 0.620913 | 5_3:+19112618 | Msa0803770:CDS |
| GATATTGAGAATTGATGAAG+GGG | 0.627652 | 5_3:-19115244 | None:intergenic |
| GAGGACAATGACGATGACAC+TGG | 0.629852 | 5_3:+19115859 | Msa0803770:CDS |
| GGGAAAAGGAAGCACGATGG+TGG | 0.631818 | 5_3:+19112738 | Msa0803770:CDS |
| CGACACTTGTAGTTCTGATG+AGG | 0.643806 | 5_3:+19115840 | Msa0803770:CDS |
| AGCTGAAGATGAAAGTCCAT+AGG | 0.645096 | 5_3:+19115882 | Msa0803770:CDS |
| TCATGGAGGAGGATAAGTCT+CGG | 0.646385 | 5_3:-19112399 | None:intergenic |
| CTAGGAGACCGTCTAAGCGA+CGG | 0.647438 | 5_3:-19112519 | None:intergenic |
| AGTTGATCAAAATCATAAAG+GGG | 0.648404 | 5_3:+19115381 | Msa0803770:CDS |
| GCTGACATTGAGGTGGTGTG+TGG | 0.659104 | 5_3:-19115189 | None:intergenic |
| GAGGTGGTGTGTGGAAGTCG+TGG | 0.661838 | 5_3:-19115180 | None:intergenic |
| GTGGTGATGGAATTGAGGAA+GGG | 0.666606 | 5_3:+19112682 | Msa0803770:CDS |
| AGGAAGGAAGAAGTTGAATG+TGG | 0.671131 | 5_3:+19112783 | Msa0803770:CDS |
| AAGTCTCGGTGATCTTCGTG+GGG | 0.683062 | 5_3:-19112385 | None:intergenic |
| GTGAAAAGGAAGAGAAAGCG+CGG | 0.698757 | 5_3:+19112807 | Msa0803770:CDS |
| GATCGAGGCTGACATTGAGG+TGG | 0.699614 | 5_3:-19115196 | None:intergenic |
| GCGGTGGTGAAGTTGCACAA+GGG | 0.717023 | 5_3:+19112826 | Msa0803770:CDS |
| ATTGATTCTACTGAACAGAG+AGG | 0.728628 | 5_3:-19112306 | None:intergenic |
| CAGGTGGGTAAACGACAGTG+TGG | 0.736979 | 5_3:-19112359 | None:intergenic |
| GAAGGGAAAAGGAAGCACGA+TGG | 0.742431 | 5_3:+19112735 | Msa0803770:CDS |
| AAAAGGAAGAGAAAGCGCGG+TGG | 0.749477 | 5_3:+19112810 | Msa0803770:CDS |
| AAAAGGAGAAGAAAGCACGG+TGG | 0.843786 | 5_3:+19112663 | Msa0803770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGAAAAATTATAGATTAA+TGG | + | chr5_3:19113062-19113081 | Msa0803770:intron | 10.0% |
| !! | TAGAAAAATTATAGATTAAT+GGG | + | chr5_3:19113063-19113082 | Msa0803770:intron | 10.0% |
| !! | ATAAAATTATAATTTCTTGA+TGG | + | chr5_3:19115040-19115059 | Msa0803770:intron | 10.0% |
| !! | ACATAATATAGTGTAATTAT+AGG | - | chr5_3:19114069-19114088 | None:intergenic | 15.0% |
| !!! | AAAATTATAGATTAATGGGT+TGG | + | chr5_3:19113067-19113086 | Msa0803770:intron | 20.0% |
| !! | TGATATGTGACATAATATTA+TGG | + | chr5_3:19113099-19113118 | Msa0803770:intron | 20.0% |
| !!! | ATTGTGAGATTTGAAATTTA+TGG | + | chr5_3:19113391-19113410 | Msa0803770:intron | 20.0% |
| !!! | TTGTGAGATTTGAAATTTAT+GGG | + | chr5_3:19113392-19113411 | Msa0803770:intron | 20.0% |
| !! | AATTATAGTGTTTAATCCAA+TGG | + | chr5_3:19113657-19113676 | Msa0803770:intron | 20.0% |
| !!! | CAACTACAAATATTTTTTCA+TGG | - | chr5_3:19113756-19113775 | None:intergenic | 20.0% |
| !!! | TTTTCTCATATAGTTTTTCT+AGG | - | chr5_3:19113866-19113885 | None:intergenic | 20.0% |
| !! | AATATATAACAGATCGTTTA+TGG | + | chr5_3:19113928-19113947 | Msa0803770:intron | 20.0% |
| !! | TTTAAAGAACAACAAAACAA+AGG | - | chr5_3:19114462-19114481 | None:intergenic | 20.0% |
| !!! | TTAATCCAATAGTTTTATAG+AGG | + | chr5_3:19114640-19114659 | Msa0803770:intron | 20.0% |
| !! | TATATTTAACAGTTACCTTT+AGG | - | chr5_3:19114765-19114784 | None:intergenic | 20.0% |
| !!! | TATTACATTTTTCTTTGTGA+TGG | - | chr5_3:19115023-19115042 | None:intergenic | 20.0% |
| !!! | AAAGTTGATCAAAATCATAA+AGG | + | chr5_3:19115379-19115398 | Msa0803770:CDS | 20.0% |
| !!! | AAGTTGATCAAAATCATAAA+GGG | + | chr5_3:19115380-19115399 | Msa0803770:CDS | 20.0% |
| !! | TTAGTAGAAAAATCAAAGTT+GGG | - | chr5_3:19115427-19115446 | None:intergenic | 20.0% |
| !! | ATTAGTAGAAAAATCAAAGT+TGG | - | chr5_3:19115428-19115447 | None:intergenic | 20.0% |
| !! | ATGTCAATCAATTAAGATTT+AGG | + | chr5_3:19115653-19115672 | Msa0803770:CDS | 20.0% |
| !! | TGTCAATCAATTAAGATTTA+GGG | + | chr5_3:19115654-19115673 | Msa0803770:CDS | 20.0% |
| !!! | TTTAAAGTTTTAGACATTGT+AGG | + | chr5_3:19115959-19115978 | Msa0803770:three_prime_UTR | 20.0% |
| !! | TCCAAACTTATATTGTAATA+TGG | + | chr5_3:19116078-19116097 | Msa0803770:three_prime_UTR | 20.0% |
| !!! | CACTTTAACATCATTTTTCT+TGG | - | chr5_3:19112550-19112569 | None:intergenic | 25.0% |
| !! | CTACTAACTAGTTTAAATCT+AGG | - | chr5_3:19113294-19113313 | None:intergenic | 25.0% |
| !! | AGTGATTAATTTTGAGCAAA+TGG | - | chr5_3:19113425-19113444 | None:intergenic | 25.0% |
| ! | GAAAAACAACAACAAAACAA+AGG | - | chr5_3:19113488-19113507 | None:intergenic | 25.0% |
| !!! | TAATCCAATGGTTTTATAGA+AGG | + | chr5_3:19113669-19113688 | Msa0803770:intron | 25.0% |
| ! | ATTACTTGTCCAAATTAATG+AGG | + | chr5_3:19113836-19113855 | Msa0803770:intron | 25.0% |
| ! | TATCAAACTCATTAATCACT+AGG | - | chr5_3:19113901-19113920 | None:intergenic | 25.0% |
| ! | TCTATGTGTTTATTTCCTAA+AGG | + | chr5_3:19114747-19114766 | Msa0803770:intron | 25.0% |
| ! | CTTTCATGTTTATCGAATAT+CGG | + | chr5_3:19114796-19114815 | Msa0803770:intron | 25.0% |
| ! | ATTTCATAAAGATGTCTGAA+TGG | - | chr5_3:19114948-19114967 | None:intergenic | 25.0% |
| !!! | ACAGAATCACTTTTACTTTT+CGG | + | chr5_3:19114969-19114988 | Msa0803770:intron | 25.0% |
| ! | AGATATTGAGAATTGATGAA+GGG | - | chr5_3:19115248-19115267 | None:intergenic | 25.0% |
| !!! | GATTTTGATCAACTTTAAGA+TGG | - | chr5_3:19115375-19115394 | None:intergenic | 25.0% |
| ! | AGTTGATCAAAATCATAAAG+GGG | + | chr5_3:19115381-19115400 | Msa0803770:CDS | 25.0% |
| ! | ATCTTTCATTGCAAATTTGT+AGG | - | chr5_3:19115510-19115529 | None:intergenic | 25.0% |
| ! | GCCATATTACAATATAAGTT+TGG | - | chr5_3:19116082-19116101 | None:intergenic | 25.0% |
| !! | TTTTCAGATGTAATGCATTT+AGG | + | chr5_3:19116111-19116130 | Msa0803770:three_prime_UTR | 25.0% |
| ! | AAATATACAAAGATCACAGT+AGG | + | chr5_3:19116194-19116213 | Msa0803770:three_prime_UTR | 25.0% |
| !!! | ACTTCTTGTTGTTTTTGAGA+GGG | - | chr5_3:19112281-19112300 | None:intergenic | 30.0% |
| !!! | AACTTCTTGTTGTTTTTGAG+AGG | - | chr5_3:19112282-19112301 | None:intergenic | 30.0% |
| CTTGATATGGTTGTAGATTT+GGG | - | chr5_3:19112450-19112469 | None:intergenic | 30.0% | |
| TCTTGATATGGTTGTAGATT+TGG | - | chr5_3:19112451-19112470 | None:intergenic | 30.0% | |
| !! | TCATTTTTCTTGGAGAATCT+AGG | - | chr5_3:19112540-19112559 | None:intergenic | 30.0% |
| GATGTTAAAGTGAGTGAATT+TGG | + | chr5_3:19112558-19112577 | Msa0803770:CDS | 30.0% | |
| TCTTACATACAGAGAAAGAT+AGG | - | chr5_3:19112945-19112964 | None:intergenic | 30.0% | |
| TTGAATTATGTGTCTAAACG+AGG | + | chr5_3:19113034-19113053 | Msa0803770:intron | 30.0% | |
| ACTAAATACTGTCTACTACA+TGG | - | chr5_3:19113136-19113155 | None:intergenic | 30.0% | |
| AGACAGTATTTAGTGTGATA+AGG | + | chr5_3:19113142-19113161 | Msa0803770:intron | 30.0% | |
| GTATTTAGTGTGATAAGGTT+TGG | + | chr5_3:19113147-19113166 | Msa0803770:intron | 30.0% | |
| ! | TTCAGTAAGCTAAACTTGTT+TGG | + | chr5_3:19113196-19113215 | Msa0803770:intron | 30.0% |
| CAACACTATTAGTAAATAGC+TGG | + | chr5_3:19113259-19113278 | Msa0803770:intron | 30.0% | |
| !!! | ATGACGATTTTGGTTTATCA+CGG | + | chr5_3:19113450-19113469 | Msa0803770:intron | 30.0% |
| ! | CAAAACAAAGGCATAAGATA+AGG | - | chr5_3:19113476-19113495 | None:intergenic | 30.0% |
| AATGCCTTCTATAAAACCAT+TGG | - | chr5_3:19113676-19113695 | None:intergenic | 30.0% | |
| TCTCAAATTATTATCCGTGT+CGG | + | chr5_3:19114094-19114113 | Msa0803770:intron | 30.0% | |
| !! | AAGTTTTATCCTATGAAGCA+CGG | - | chr5_3:19114161-19114180 | None:intergenic | 30.0% |
| ! | CTCAGTAAGCTAAATTTGTT+CGG | + | chr5_3:19114210-19114229 | Msa0803770:intron | 30.0% |
| GAAGTTTCAAATCTCACAAT+TGG | - | chr5_3:19114366-19114385 | None:intergenic | 30.0% | |
| ! | ATTGTGAGATTTGAAACTTC+TGG | + | chr5_3:19114366-19114385 | Msa0803770:intron | 30.0% |
| ! | TTGTGAGATTTGAAACTTCT+GGG | + | chr5_3:19114367-19114386 | Msa0803770:intron | 30.0% |
| ! | CAAAACAAAGGCATAAGATA+AGG | - | chr5_3:19113476-19113495 | None:intergenic | 30.0% |
| TTTCAATAACAACACCATGT+TGG | - | chr5_3:19114724-19114743 | None:intergenic | 30.0% | |
| !!! | TGTTTATCGAATATCGGTTT+TGG | + | chr5_3:19114802-19114821 | Msa0803770:intron | 30.0% |
| GTGAGCATTTGAATTATTCT+GGG | + | chr5_3:19114880-19114899 | Msa0803770:intron | 30.0% | |
| TGAGCATTTGAATTATTCTG+GGG | + | chr5_3:19114881-19114900 | Msa0803770:intron | 30.0% | |
| GATATTGAGAATTGATGAAG+GGG | - | chr5_3:19115247-19115266 | None:intergenic | 30.0% | |
| GAGATATTGAGAATTGATGA+AGG | - | chr5_3:19115249-19115268 | None:intergenic | 30.0% | |
| !! | TGATTTTCCTTTTGTTGCTT+TGG | - | chr5_3:19115481-19115500 | None:intergenic | 30.0% |
| AAGCAACAAAAGGAAAATCA+AGG | + | chr5_3:19115481-19115500 | Msa0803770:CDS | 30.0% | |
| AGCAACAAAAGGAAAATCAA+GGG | + | chr5_3:19115482-19115501 | Msa0803770:CDS | 30.0% | |
| AAGTCTCTTTCTAGATTTAG+TGG | + | chr5_3:19115556-19115575 | Msa0803770:CDS | 30.0% | |
| !!! | TTTTTTACTTGCTTTAGCAC+AGG | - | chr5_3:19115613-19115632 | None:intergenic | 30.0% |
| GCTAAAGCAAGTAAAAAACA+AGG | + | chr5_3:19115615-19115634 | Msa0803770:CDS | 30.0% | |
| AATTAAGATTTAGGGACCTT+AGG | + | chr5_3:19115662-19115681 | Msa0803770:CDS | 30.0% | |
| CAATCCCAAATCAATTTCAT+GGG | + | chr5_3:19115817-19115836 | Msa0803770:CDS | 30.0% | |
| ATGCTACATCTACAAAACTT+GGG | - | chr5_3:19116012-19116031 | None:intergenic | 30.0% | |
| AATGCTACATCTACAAAACT+TGG | - | chr5_3:19116013-19116032 | None:intergenic | 30.0% | |
| ! | AGATGTAATGCATTTAGGTT+GGG | + | chr5_3:19116116-19116135 | Msa0803770:three_prime_UTR | 30.0% |
| TAATTGTCTTGTATCCATCT+AGG | + | chr5_3:19116160-19116179 | Msa0803770:three_prime_UTR | 30.0% | |
| ATTTCCATTCCTTCAATCAC+AGG | + | chr5_3:19112238-19112257 | Msa0803770:five_prime_UTR | 35.0% | |
| GAATTCAAACCTGTGATTGA+AGG | - | chr5_3:19112250-19112269 | None:intergenic | 35.0% | |
| ! | ATTGATTCTACTGAACAGAG+AGG | - | chr5_3:19112309-19112328 | None:intergenic | 35.0% |
| ! | TGTTTGGCATTTTCACAAAC+AGG | - | chr5_3:19112335-19112354 | None:intergenic | 35.0% |
| !! | TGGTTGTAGATTTGGGTTTT+GGG | - | chr5_3:19112443-19112462 | None:intergenic | 35.0% |
| !! | ATGGTTGTAGATTTGGGTTT+TGG | - | chr5_3:19112444-19112463 | None:intergenic | 35.0% |
| !!! | AACGGTTTTGGATCTTGATA+TGG | - | chr5_3:19112463-19112482 | None:intergenic | 35.0% |
| TATCAAGATCCAAAACCGTT+AGG | + | chr5_3:19112463-19112482 | Msa0803770:CDS | 35.0% | |
| ATCAAGATCCAAAACCGTTA+GGG | + | chr5_3:19112464-19112483 | Msa0803770:CDS | 35.0% | |
| ! | TTTTCTTACCCTAACGGTTT+TGG | - | chr5_3:19112475-19112494 | None:intergenic | 35.0% |
| ! | TGTTTTTCTCATCGAATCAC+AGG | - | chr5_3:19112586-19112605 | None:intergenic | 35.0% |
| TGTGATTCGATGAGAAAAAC+AGG | + | chr5_3:19112585-19112604 | Msa0803770:CDS | 35.0% | |
| GGAAAAGTGAAGAAAAGTAG+CGG | + | chr5_3:19112615-19112634 | Msa0803770:CDS | 35.0% | |
| GAAAAGTGAAGAAAAGTAGC+GGG | + | chr5_3:19112616-19112635 | Msa0803770:CDS | 35.0% | |
| AAAAGTGAAGAAAAGTAGCG+GGG | + | chr5_3:19112617-19112636 | Msa0803770:CDS | 35.0% | |
| AGAAAAAGGAGAAGAAAGCA+CGG | + | chr5_3:19112660-19112679 | Msa0803770:CDS | 35.0% | |
| AGGAAGAAAGAAGAGATTGA+AGG | + | chr5_3:19112705-19112724 | Msa0803770:CDS | 35.0% | |
| AAGAAAGAAGAGATTGAAGG+TGG | + | chr5_3:19112708-19112727 | Msa0803770:CDS | 35.0% | |
| AAGTTGAATGTGGTGTGAAA+AGG | + | chr5_3:19112793-19112812 | Msa0803770:CDS | 35.0% | |
| AAATTCGTCAAGTATCAGCA+AGG | + | chr5_3:19113234-19113253 | Msa0803770:intron | 35.0% | |
| AGTAGTGTGTATGTCTAGAA+AGG | + | chr5_3:19113309-19113328 | Msa0803770:intron | 35.0% | |
| ! | TCACTCAAAGATGACGATTT+TGG | + | chr5_3:19113440-19113459 | Msa0803770:intron | 35.0% |
| ! | CTGTTTTCACATGACATTTC+AGG | - | chr5_3:19113534-19113553 | None:intergenic | 35.0% |
| !! | TTTATAGAAGGCATTGCATC+AGG | + | chr5_3:19113681-19113700 | Msa0803770:intron | 35.0% |
| !! | TTATAGAAGGCATTGCATCA+GGG | + | chr5_3:19113682-19113701 | Msa0803770:intron | 35.0% |
| CTAGGTCTTCCTCATTAATT+TGG | - | chr5_3:19113848-19113867 | None:intergenic | 35.0% | |
| !! | AGGTTTTATCCCACTAAGTA+GGG | - | chr5_3:19113977-19113996 | None:intergenic | 35.0% |
| !! | TAGGTTTTATCCCACTAAGT+AGG | - | chr5_3:19113978-19113997 | None:intergenic | 35.0% |
| ! | TGTAATTATAGGTGTCGTGT+CGG | - | chr5_3:19114058-19114077 | None:intergenic | 35.0% |
| !! | AGTTTTATCCTATGAAGCAC+GGG | - | chr5_3:19114160-19114179 | None:intergenic | 35.0% |
| GTGCTTCATAGGATAAAACT+TGG | + | chr5_3:19114160-19114179 | Msa0803770:intron | 35.0% | |
| ! | CGAACAAATTTAGCTTACTG+AGG | - | chr5_3:19114212-19114231 | None:intergenic | 35.0% |
| CAACACAATTGGTAAATAGC+TGG | + | chr5_3:19114266-19114285 | Msa0803770:intron | 35.0% | |
| ACTAGTTAGCGTGTATAGAA+AGG | + | chr5_3:19114309-19114328 | Msa0803770:intron | 35.0% | |
| TCGTCTTTGAGTGAATCTTT+CGG | - | chr5_3:19114408-19114427 | None:intergenic | 35.0% | |
| TCACTCAAAGACGATAAGTT+TGG | + | chr5_3:19114414-19114433 | Msa0803770:intron | 35.0% | |
| TGCAGCCTCTATAAAACTAT+TGG | - | chr5_3:19114648-19114667 | None:intergenic | 35.0% | |
| TAACAACACCATGTTGGAAA+CGG | - | chr5_3:19114718-19114737 | None:intergenic | 35.0% | |
| GGTGAGCATTTGAATTATTC+TGG | + | chr5_3:19114879-19114898 | Msa0803770:intron | 35.0% | |
| TAAGCACATGTGCACTTATA+TGG | - | chr5_3:19115077-19115096 | None:intergenic | 35.0% | |
| TGTACAGCAATTTCAATGAC+CGG | - | chr5_3:19115106-19115125 | None:intergenic | 35.0% | |
| TTCTGAGTAACAATGCTCTT+TGG | - | chr5_3:19115328-19115347 | None:intergenic | 35.0% | |
| TTGTACTCCAAAGCAACAAA+AGG | + | chr5_3:19115471-19115490 | Msa0803770:CDS | 35.0% | |
| AAAAAATCTGTAGCTGGAGA+AGG | + | chr5_3:19115709-19115728 | Msa0803770:CDS | 35.0% | |
| TAAAGCAGCAAAAGTTGCAT+TGG | + | chr5_3:19115759-19115778 | Msa0803770:CDS | 35.0% | |
| GCAATCCCAAATCAATTTCA+TGG | + | chr5_3:19115816-19115835 | Msa0803770:CDS | 35.0% | |
| CAGATGTAATGCATTTAGGT+TGG | + | chr5_3:19116115-19116134 | Msa0803770:three_prime_UTR | 35.0% | |
| TTTCAAGCTAAGTACCTAGA+TGG | - | chr5_3:19116177-19116196 | None:intergenic | 35.0% | |
| CAAACCTGTGATTGAAGGAA+TGG | - | chr5_3:19112245-19112264 | None:intergenic | 40.0% | |
| !! | GGTTGTAGATTTGGGTTTTG+GGG | - | chr5_3:19112442-19112461 | None:intergenic | 40.0% |
| ! | GGGTGATTTTCTTACCCTAA+CGG | - | chr5_3:19112481-19112500 | None:intergenic | 40.0% |
| GGAACTTGATCGCTCAAATT+GGG | - | chr5_3:19112501-19112520 | None:intergenic | 40.0% | |
| ATGAGAAAAACAGGTCGTGA+AGG | + | chr5_3:19112594-19112613 | Msa0803770:CDS | 40.0% | |
| AAAGTGAAGAAAAGTAGCGG+GGG | + | chr5_3:19112618-19112637 | Msa0803770:CDS | 40.0% | |
| TGGTTGAAGGTGGTAGAAAA+AGG | + | chr5_3:19112646-19112665 | Msa0803770:CDS | 40.0% | |
| AGATTGAAGGTGGAGTAGAA+GGG | + | chr5_3:19112718-19112737 | Msa0803770:CDS | 40.0% | |
| ! | GTGAAATAGTGGAAGAGTTG+AGG | + | chr5_3:19112763-19112782 | Msa0803770:CDS | 40.0% |
| ! | AATAGTGGAAGAGTTGAGGA+AGG | + | chr5_3:19112767-19112786 | Msa0803770:CDS | 40.0% |
| AGGAAGGAAGAAGTTGAATG+TGG | + | chr5_3:19112783-19112802 | Msa0803770:CDS | 40.0% | |
| ! | GTGGACTAAGGAACAAGAAT+TGG | + | chr5_3:19112848-19112867 | Msa0803770:CDS | 40.0% |
| CAAAACCTAGTCCTCATTTC+TGG | + | chr5_3:19112895-19112914 | Msa0803770:CDS | 40.0% | |
| TTCTTCCAGAAATGAGGACT+AGG | - | chr5_3:19112903-19112922 | None:intergenic | 40.0% | |
| GAAACGTTCTTCCAGAAATG+AGG | - | chr5_3:19112909-19112928 | None:intergenic | 40.0% | |
| ATGTCTAGAAAGGTCTTCTC+AGG | + | chr5_3:19113319-19113338 | Msa0803770:intron | 40.0% | |
| ACTAATCTGCGCTGAGATTA+AGG | - | chr5_3:19113366-19113385 | None:intergenic | 40.0% | |
| GCTGCACACAATGATAAAGA+AGG | + | chr5_3:19113569-19113588 | Msa0803770:intron | 40.0% | |
| !! | ATAAAGAAGGCATTGCAGCA+TGG | + | chr5_3:19113582-19113601 | Msa0803770:intron | 40.0% |
| AGAGGTAGACACATACATTG+CGG | + | chr5_3:19113710-19113729 | Msa0803770:intron | 40.0% | |
| TTGTAGTTGACCCTACTTAG+TGG | + | chr5_3:19113964-19113983 | Msa0803770:intron | 40.0% | |
| TGTAGTTGACCCTACTTAGT+GGG | + | chr5_3:19113965-19113984 | Msa0803770:intron | 40.0% | |
| GGGATAAAACCTATGAAGCA+CGG | + | chr5_3:19113985-19114004 | Msa0803770:intron | 40.0% | |
| CATACTATGAAACCCGTCAA+GGG | + | chr5_3:19114233-19114252 | Msa0803770:intron | 40.0% | |
| GCAGCAAAGTTCAACACAAT+TGG | + | chr5_3:19114255-19114274 | Msa0803770:intron | 40.0% | |
| ! | ACGCTAACTAGTTTGAACCT+AGG | - | chr5_3:19114301-19114320 | None:intergenic | 40.0% |
| CGTCTTTGAGTGAATCTTTC+GGG | - | chr5_3:19114407-19114426 | None:intergenic | 40.0% | |
| !! | TGATAGAGAAGGCATTGTAG+TGG | + | chr5_3:19114553-19114572 | Msa0803770:intron | 40.0% |
| !! | GATAGAGAAGGCATTGTAGT+GGG | + | chr5_3:19114554-19114573 | Msa0803770:intron | 40.0% |
| AGATCCAACAGTTACCATAC+GGG | - | chr5_3:19114677-19114696 | None:intergenic | 40.0% | |
| GAGATCCAACAGTTACCATA+CGG | - | chr5_3:19114678-19114697 | None:intergenic | 40.0% | |
| GATGTTAACCGTTTCCAACA+TGG | + | chr5_3:19114707-19114726 | Msa0803770:intron | 40.0% | |
| TCAAGCTTGCAATTGCATGA+GGG | + | chr5_3:19114904-19114923 | Msa0803770:intron | 40.0% | |
| TGCTGTACAAAATCTGTTGC+AGG | + | chr5_3:19115117-19115136 | Msa0803770:intron | 40.0% | |
| AAAATCTGTTGCAGGTACCT+GGG | + | chr5_3:19115125-19115144 | Msa0803770:intron | 40.0% | |
| ! | CAATCTTGTTTAGACTTCCC+AGG | - | chr5_3:19115145-19115164 | None:intergenic | 40.0% |
| GGAGTACAAAGTTCTTGACT+AGG | - | chr5_3:19115460-19115479 | None:intergenic | 40.0% | |
| TCTAGATTTAGTGGCTCATC+AGG | + | chr5_3:19115565-19115584 | Msa0803770:CDS | 40.0% | |
| TTTACTTGCTTTAGCACAGG+TGG | - | chr5_3:19115610-19115629 | None:intergenic | 40.0% | |
| AGGGCAAAAAAATCTGTAGC+TGG | + | chr5_3:19115703-19115722 | Msa0803770:CDS | 40.0% | |
| ! | GTCGCCCATGAAATTGATTT+GGG | - | chr5_3:19115824-19115843 | None:intergenic | 40.0% |
| TGTCGCCCATGAAATTGATT+TGG | - | chr5_3:19115825-19115844 | None:intergenic | 40.0% | |
| AGCTGAAGATGAAAGTCCAT+AGG | + | chr5_3:19115882-19115901 | Msa0803770:CDS | 40.0% | |
| ATTAGCTCGAGAAAAGCCTA+TGG | - | chr5_3:19115901-19115920 | None:intergenic | 40.0% | |
| ACGACAGTGTGGTTTCTGTT+TGG | - | chr5_3:19112351-19112370 | None:intergenic | 45.0% | |
| TAAGTCTCGGTGATCTTCGT+GGG | - | chr5_3:19112389-19112408 | None:intergenic | 45.0% | |
| ATAAGTCTCGGTGATCTTCG+TGG | - | chr5_3:19112390-19112409 | None:intergenic | 45.0% | |
| TCATGGAGGAGGATAAGTCT+CGG | - | chr5_3:19112402-19112421 | None:intergenic | 45.0% | |
| !!! | GGTTGTTGTTTTCATGGAGG+AGG | - | chr5_3:19112413-19112432 | None:intergenic | 45.0% |
| !!! | TGGGGTTGTTGTTTTCATGG+AGG | - | chr5_3:19112416-19112435 | None:intergenic | 45.0% |
| !!! | TGGTGGGGTTGTTGTTTTCA+TGG | - | chr5_3:19112419-19112438 | None:intergenic | 45.0% |
| !!! | TGTAGATTTGGGTTTTGGGG+TGG | - | chr5_3:19112439-19112458 | None:intergenic | 45.0% |
| CGGAACTTGATCGCTCAAAT+TGG | - | chr5_3:19112502-19112521 | None:intergenic | 45.0% | |
| ATCAAGTTCCGTCGCTTAGA+CGG | + | chr5_3:19112511-19112530 | Msa0803770:CDS | 45.0% | |
| ! | AAAAGGAGAAGAAAGCACGG+TGG | + | chr5_3:19112663-19112682 | Msa0803770:CDS | 45.0% |
| !! | GTGGTGATGGAATTGAGGAA+GGG | + | chr5_3:19112682-19112701 | Msa0803770:CDS | 45.0% |
| GAGATTGAAGGTGGAGTAGA+AGG | + | chr5_3:19112717-19112736 | Msa0803770:CDS | 45.0% | |
| AAGGTGGAGTAGAAGGGAAA+AGG | + | chr5_3:19112724-19112743 | Msa0803770:CDS | 45.0% | |
| GTGAAAAGGAAGAGAAAGCG+CGG | + | chr5_3:19112807-19112826 | Msa0803770:CDS | 45.0% | |
| CTGGAAGAACGTTTCGAAAC+TGG | + | chr5_3:19112914-19112933 | Msa0803770:CDS | 45.0% | |
| TCTCAGGAGAGTCAAAACAC+AGG | + | chr5_3:19113335-19113354 | Msa0803770:intron | 45.0% | |
| GCATACTATGAAACCCGTCA+AGG | + | chr5_3:19114232-19114251 | Msa0803770:intron | 45.0% | |
| TTGAACTTTGCTGCCCTTGA+CGG | - | chr5_3:19114249-19114268 | None:intergenic | 45.0% | |
| GTGTATAGAAAGGCCATGTC+CGG | + | chr5_3:19114319-19114338 | Msa0803770:intron | 45.0% | |
| GAGTGAATCTTTCGGGCAAA+TGG | - | chr5_3:19114400-19114419 | None:intergenic | 45.0% | |
| GTGGCACACAATGATAGAGA+AGG | + | chr5_3:19114542-19114561 | Msa0803770:intron | 45.0% | |
| TGCGGTCTCTATAGAACTGT+TGG | + | chr5_3:19114602-19114621 | Msa0803770:intron | 45.0% | |
| ATGTCCCGTATGGTAACTGT+TGG | + | chr5_3:19114670-19114689 | Msa0803770:intron | 45.0% | |
| AACTGTTGGATCTCGACGTT+TGG | + | chr5_3:19114684-19114703 | Msa0803770:intron | 45.0% | |
| ACTGTTGGATCTCGACGTTT+GGG | + | chr5_3:19114685-19114704 | Msa0803770:intron | 45.0% | |
| CTAGATAGATCACGTGGTCA+TGG | - | chr5_3:19114860-19114879 | None:intergenic | 45.0% | |
| CATGACCACGTGATCTATCT+AGG | + | chr5_3:19114858-19114877 | Msa0803770:intron | 45.0% | |
| GTCAAGCTTGCAATTGCATG+AGG | + | chr5_3:19114903-19114922 | Msa0803770:intron | 45.0% | |
| CAAGCTTGCAATTGCATGAG+GGG | + | chr5_3:19114905-19114924 | Msa0803770:intron | 45.0% | |
| GCACATGTGCTTATTTGCTC+CGG | + | chr5_3:19115084-19115103 | Msa0803770:intron | 45.0% | |
| CAAAATCTGTTGCAGGTACC+TGG | + | chr5_3:19115124-19115143 | Msa0803770:intron | 45.0% | |
| TCAATGTCAGCCTCGATCAA+GGG | + | chr5_3:19115201-19115220 | Msa0803770:CDS | 45.0% | |
| GTGGGTATGAGCAGTTTACT+TGG | - | chr5_3:19115271-19115290 | None:intergenic | 45.0% | |
| AGTAAACTGCTCATACCCAC+TGG | + | chr5_3:19115271-19115290 | Msa0803770:CDS | 45.0% | |
| ATACCCACTGGAAAGAAGGT+TGG | + | chr5_3:19115283-19115302 | Msa0803770:CDS | 45.0% | |
| TTGCCAACCTTCTTTCCAGT+GGG | - | chr5_3:19115289-19115308 | None:intergenic | 45.0% | |
| TTTGCCAACCTTCTTTCCAG+TGG | - | chr5_3:19115290-19115309 | None:intergenic | 45.0% | |
| AAGATGCTGCTCTTCTCCTA+AGG | - | chr5_3:19115681-19115700 | None:intergenic | 45.0% | |
| GAGAAGAGCAGCATCTTCAA+GGG | + | chr5_3:19115684-19115703 | Msa0803770:CDS | 45.0% | |
| TCTGTAGCTGGAGAAGGAAA+AGG | + | chr5_3:19115715-19115734 | Msa0803770:CDS | 45.0% | |
| !! | CGACACTTGTAGTTCTGATG+AGG | + | chr5_3:19115840-19115859 | Msa0803770:CDS | 45.0% |
| AAGTCTCGGTGATCTTCGTG+GGG | - | chr5_3:19112388-19112407 | None:intergenic | 50.0% | |
| !!! | ATTTGGGTTTTGGGGTGGTG+GGG | - | chr5_3:19112434-19112453 | None:intergenic | 50.0% |
| !!! | GATTTGGGTTTTGGGGTGGT+GGG | - | chr5_3:19112435-19112454 | None:intergenic | 50.0% |
| !!! | AGATTTGGGTTTTGGGGTGG+TGG | - | chr5_3:19112436-19112455 | None:intergenic | 50.0% |
| ! | AGAAGAAAGCACGGTGGTGA+TGG | + | chr5_3:19112669-19112688 | Msa0803770:CDS | 50.0% |
| !! | GGTGGTGATGGAATTGAGGA+AGG | + | chr5_3:19112681-19112700 | Msa0803770:CDS | 50.0% |
| ! | GTGATGGAATTGAGGAAGGG+AGG | + | chr5_3:19112685-19112704 | Msa0803770:CDS | 50.0% |
| ! | GAAGGGAAAAGGAAGCACGA+TGG | + | chr5_3:19112735-19112754 | Msa0803770:CDS | 50.0% |
| ! | AAAAGGAAGCACGATGGTGG+TGG | + | chr5_3:19112741-19112760 | Msa0803770:CDS | 50.0% |
| !! | CGATGGTGGTGGTGAAATAG+TGG | + | chr5_3:19112752-19112771 | Msa0803770:CDS | 50.0% |
| ! | AAAAGGAAGAGAAAGCGCGG+TGG | + | chr5_3:19112810-19112829 | Msa0803770:CDS | 50.0% |
| !! | AGTTGCACAAGGGTGGACTA+AGG | + | chr5_3:19112836-19112855 | Msa0803770:CDS | 50.0% |
| TCCTCGAATTAGGTGTGTCC+CGG | + | chr5_3:19114012-19114031 | Msa0803770:intron | 50.0% | |
| AATTAGGTGTGTCCCGGTGT+CGG | + | chr5_3:19114018-19114037 | Msa0803770:intron | 50.0% | |
| TGAACTTTGCTGCCCTTGAC+GGG | - | chr5_3:19114248-19114267 | None:intergenic | 50.0% | |
| ATAGCTGGATCGTGTGTCCT+AGG | + | chr5_3:19114281-19114300 | Msa0803770:intron | 50.0% | |
| ACTAATCCGCTCTGACTCTC+CGG | - | chr5_3:19114341-19114360 | None:intergenic | 50.0% | |
| !! | GCATTGTAGTGGGCTTACAG+CGG | + | chr5_3:19114564-19114583 | Msa0803770:intron | 50.0% |
| TATAGAGACCGCACTGTCTG+CGG | - | chr5_3:19114595-19114614 | None:intergenic | 50.0% | |
| GCTCACCTAGATAGATCACG+TGG | - | chr5_3:19114866-19114885 | None:intergenic | 50.0% | |
| CTTGATCGAGGCTGACATTG+AGG | - | chr5_3:19115202-19115221 | None:intergenic | 50.0% | |
| CTCAATGTCAGCCTCGATCA+AGG | + | chr5_3:19115200-19115219 | Msa0803770:CDS | 50.0% | |
| ATTGCCTTTGCCCTTGATCG+AGG | - | chr5_3:19115214-19115233 | None:intergenic | 50.0% | |
| GCTCATACCCACTGGAAAGA+AGG | + | chr5_3:19115279-19115298 | Msa0803770:CDS | 50.0% | |
| GGAGAAGAGCAGCATCTTCA+AGG | + | chr5_3:19115683-19115702 | Msa0803770:CDS | 50.0% | |
| GAGGACAATGACGATGACAC+TGG | + | chr5_3:19115859-19115878 | Msa0803770:CDS | 50.0% | |
| CAGGTGGGTAAACGACAGTG+TGG | - | chr5_3:19112362-19112381 | None:intergenic | 55.0% | |
| ! | CACACTGTCGTTTACCCACC+TGG | + | chr5_3:19112360-19112379 | Msa0803770:CDS | 55.0% |
| CTAGGAGACCGTCTAAGCGA+CGG | - | chr5_3:19112522-19112541 | None:intergenic | 55.0% | |
| ! | GAAAAGTAGCGGGGGAGTTG+TGG | + | chr5_3:19112626-19112645 | Msa0803770:CDS | 55.0% |
| !! | GCACGGTGGTGATGGAATTG+AGG | + | chr5_3:19112677-19112696 | Msa0803770:CDS | 55.0% |
| ! | GGGAAAAGGAAGCACGATGG+TGG | + | chr5_3:19112738-19112757 | Msa0803770:CDS | 55.0% |
| GCGGTGGTGAAGTTGCACAA+GGG | + | chr5_3:19112826-19112845 | Msa0803770:CDS | 55.0% | |
| GTGGTGAAGTTGCACAAGGG+TGG | + | chr5_3:19112829-19112848 | Msa0803770:CDS | 55.0% | |
| CATTGTGTGCAGCATCGCAG+CGG | - | chr5_3:19113562-19113581 | None:intergenic | 55.0% | |
| ! | CATTGCAGCATGGCTTGCAG+TGG | + | chr5_3:19113592-19113611 | Msa0803770:intron | 55.0% |
| CATTGCATCAGGGCTTGCAG+AGG | + | chr5_3:19113692-19113711 | Msa0803770:intron | 55.0% | |
| !! | GAGGAGTGTCCGTGCTTCAT+AGG | - | chr5_3:19113997-19114016 | None:intergenic | 55.0% |
| GCACGGACACTCCTCGAATT+AGG | + | chr5_3:19114002-19114021 | Msa0803770:intron | 55.0% | |
| ACCGGGACACACCTAATTCG+AGG | - | chr5_3:19114016-19114035 | None:intergenic | 55.0% | |
| GTCAGTGTCCATGTCGTGTC+CGG | + | chr5_3:19114120-19114139 | Msa0803770:intron | 55.0% | |
| ATGAAGCACGGGCACAGACA+TGG | - | chr5_3:19114149-19114168 | None:intergenic | 55.0% | |
| TGTCTGTGCCCGTGCTTCAT+AGG | + | chr5_3:19114149-19114168 | Msa0803770:intron | 55.0% | |
| CATTGTGTGCCACATCGCAG+CGG | - | chr5_3:19114535-19114554 | None:intergenic | 55.0% | |
| AGGCTGCACAATGTCCCGTA+TGG | + | chr5_3:19114660-19114679 | Msa0803770:intron | 55.0% | |
| GCTGACATTGAGGTGGTGTG+TGG | - | chr5_3:19115192-19115211 | None:intergenic | 55.0% | |
| GATCGAGGCTGACATTGAGG+TGG | - | chr5_3:19115199-19115218 | None:intergenic | 55.0% | |
| TCAGCCTCGATCAAGGGCAA+AGG | + | chr5_3:19115207-19115226 | Msa0803770:CDS | 55.0% | |
| ! | ATCTTCGTGGGGTGCCAGGT+GGG | - | chr5_3:19112377-19112396 | None:intergenic | 60.0% |
| AGCGGGGGAGTTGTGGTTGA+AGG | + | chr5_3:19112633-19112652 | Msa0803770:CDS | 60.0% | |
| GGGGGAGTTGTGGTTGAAGG+TGG | + | chr5_3:19112636-19112655 | Msa0803770:CDS | 60.0% | |
| CGCGGTGGTGAAGTTGCACA+AGG | + | chr5_3:19112825-19112844 | Msa0803770:CDS | 60.0% | |
| TGGTAGAGTCGCACGCAGTG+TGG | + | chr5_3:19113612-19113631 | Msa0803770:intron | 60.0% | |
| ACTGACGTGTGTCCGACACC+GGG | - | chr5_3:19114033-19114052 | None:intergenic | 60.0% | |
| CACTGACGTGTGTCCGACAC+CGG | - | chr5_3:19114034-19114053 | None:intergenic | 60.0% | |
| TGGACACTGACACGCCGACA+CGG | - | chr5_3:19114111-19114130 | None:intergenic | 60.0% | |
| CATGGACACCGGACACGACA+TGG | - | chr5_3:19114131-19114150 | None:intergenic | 60.0% | |
| ACGGGCACAGACATGGACAC+CGG | - | chr5_3:19114142-19114161 | None:intergenic | 60.0% | |
| CCATGTCCGGAGAGTCAGAG+CGG | + | chr5_3:19114332-19114351 | Msa0803770:intron | 60.0% | |
| GAGGTGGTGTGTGGAAGTCG+TGG | - | chr5_3:19115183-19115202 | None:intergenic | 60.0% | |
| ! | GATCTTCGTGGGGTGCCAGG+TGG | - | chr5_3:19112378-19112397 | None:intergenic | 65.0% |
| ! | GGTGATCTTCGTGGGGTGCC+AGG | - | chr5_3:19112381-19112400 | None:intergenic | 65.0% |
| CCGCTCTGACTCTCCGGACA+TGG | - | chr5_3:19114335-19114354 | None:intergenic | 65.0% | |
| ACAGTGCAGCCGCTGCGATG+TGG | + | chr5_3:19114523-19114542 | Msa0803770:intron | 65.0% | |
| CGGTAGAGCCGCAGACAGTG+CGG | + | chr5_3:19114584-19114603 | Msa0803770:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 19112207 | 19116222 | 19112207 | ID=Msa0803770;Name=Msa0803770 |
| chr5_3 | mRNA | 19112207 | 19116222 | 19112207 | ID=Msa0803770-mRNA-1;Parent=Msa0803770;Name=Msa0803770-mRNA-1;_AED=0.00;_eAED=0.00;_QI=138|1|1|1|1|1|2|319|451 |
| chr5_3 | exon | 19112207 | 19112935 | 19112207 | ID=Msa0803770-mRNA-1:exon:7850;Parent=Msa0803770-mRNA-1 |
| chr5_3 | exon | 19115139 | 19116222 | 19115139 | ID=Msa0803770-mRNA-1:exon:7851;Parent=Msa0803770-mRNA-1 |
| chr5_3 | five_prime_UTR | 19112207 | 19112344 | 19112207 | ID=Msa0803770-mRNA-1:five_prime_utr;Parent=Msa0803770-mRNA-1 |
| chr5_3 | CDS | 19112345 | 19112935 | 19112345 | ID=Msa0803770-mRNA-1:cds;Parent=Msa0803770-mRNA-1 |
| chr5_3 | CDS | 19115139 | 19115903 | 19115139 | ID=Msa0803770-mRNA-1:cds;Parent=Msa0803770-mRNA-1 |
| chr5_3 | three_prime_UTR | 19115904 | 19116222 | 19115904 | ID=Msa0803770-mRNA-1:three_prime_utr;Parent=Msa0803770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
