Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0720730 | XP_003623905.2 | 86.154 | 455 | 44 | 2 | 1 | 451 | 1 | 440 | 0.0 | 682 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0720730 | G7L3K3 | 86.154 | 455 | 44 | 2 | 1 | 451 | 1 | 440 | 0.0 | 682 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0720730 | Msa0761300 | 0.854061 | 1.581615e-61 | -8.615850e-47 |
| Msa0720730 | Msa0803770 | 0.833773 | 4.398104e-56 | -8.615850e-47 |
| Msa0720730 | Msa0841850 | 0.901702 | 2.049946e-78 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0720730 | MtrunA17_Chr7g0247241 | 86.154 | 455 | 44 | 2 | 1 | 451 | 1 | 440 | 0.0 | 682 |
| Msa0720730 | MtrunA17_Chr5g0411521 | 82.857 | 455 | 50 | 4 | 1 | 451 | 46 | 476 | 0.0 | 678 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0720730 | AT3G53440.2 | 41.852 | 270 | 127 | 6 | 154 | 423 | 249 | 488 | 5.59e-46 | 167 |
| Msa0720730 | AT3G53440.1 | 41.852 | 270 | 127 | 6 | 154 | 423 | 249 | 488 | 5.59e-46 | 167 |
Find 121 sgRNAs with CRISPR-Local
Find 269 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGCAATCAATTAAGATTT+AGG | 0.100189 | 5_1:+16905812 | Msa0720730:CDS |
| CGGAACTTGATCGCTCAAAT+TGG | 0.204301 | 5_1:-16902820 | None:intergenic |
| TCCAAACTTCTATTGTTATA+TGG | 0.221830 | 5_1:+16906237 | Msa0720730:three_prime_UTR |
| CTTGATATGGTTGAAGATTT+GGG | 0.223066 | 5_1:-16902768 | None:intergenic |
| ATGGTTGAAGATTTGGGTTT+TGG | 0.224968 | 5_1:-16902762 | None:intergenic |
| CAAAACCTAGTCCTCATTTC+TGG | 0.236228 | 5_1:+16903219 | Msa0720730:CDS |
| GAGATTGAAGGTGGAGTAGA+AGG | 0.245379 | 5_1:+16903038 | Msa0720730:CDS |
| TCTTGATATGGTTGAAGATT+TGG | 0.277662 | 5_1:-16902769 | None:intergenic |
| TGGCAATCAATTAAGATTTA+GGG | 0.296901 | 5_1:+16905813 | Msa0720730:CDS |
| CTGGAAGAACGTTTCGAAAC+TGG | 0.311757 | 5_1:+16903238 | Msa0720730:CDS |
| TTCTGAGTAACAATGCTCTT+TGG | 0.320344 | 5_1:-16905487 | None:intergenic |
| TGTCGCCCATGAAATTGATT+TGG | 0.322977 | 5_1:-16905981 | None:intergenic |
| AAGTCTCTTTCTAGATTTAG+TGG | 0.343248 | 5_1:+16905715 | Msa0720730:CDS |
| ATCTTTCATTGCAAATTTGT+AGG | 0.343532 | 5_1:-16905669 | None:intergenic |
| GATGTTAAAGTGAGTGAATT+TGG | 0.353800 | 5_1:+16902879 | Msa0720730:CDS |
| GCCATATAACAATAGAAGTT+TGG | 0.354987 | 5_1:-16906238 | None:intergenic |
| GCAATCCCAAATCAATTTCA+TGG | 0.362655 | 5_1:+16905975 | Msa0720730:CDS |
| GTCGCCCATGAAATTGATTT+GGG | 0.364937 | 5_1:-16905980 | None:intergenic |
| AAAGTTGATCAAAATCATAA+AGG | 0.382393 | 5_1:+16905541 | Msa0720730:CDS |
| CAAAATCTGTTGCAGGTACC+TGG | 0.382661 | 5_1:+16905286 | Msa0720730:intron |
| TCTAGATTTAGTGGCTCATC+AGG | 0.392797 | 5_1:+16905724 | Msa0720730:CDS |
| AAGTTGATCAAAATCATAAA+GGG | 0.398649 | 5_1:+16905542 | Msa0720730:CDS |
| GGTGATCTTCGTGGGGTGCC+AGG | 0.414139 | 5_1:-16902699 | None:intergenic |
| AATTAAGATTTAGGGACCTT+AGG | 0.417162 | 5_1:+16905821 | Msa0720730:CDS |
| ACGACAGTGGGGTTTCTGTT+TGG | 0.423200 | 5_1:-16902669 | None:intergenic |
| TGGTTGAAGGTGGTAGAAAA+AGG | 0.424066 | 5_1:+16902967 | Msa0720730:CDS |
| TTCAGATGTACATTTAGGTT+GGG | 0.424814 | 5_1:+16906272 | Msa0720730:three_prime_UTR |
| GAAAAGAGAAGAAAAGTAGC+GGG | 0.430036 | 5_1:+16902937 | Msa0720730:CDS |
| TATCAAGACCCAAAACCGTT+AGG | 0.437211 | 5_1:+16902784 | Msa0720730:CDS |
| GTGGGTATGAGCAGTTTACT+TGG | 0.440203 | 5_1:-16905430 | None:intergenic |
| TTTCAGATGTACATTTAGGT+TGG | 0.440351 | 5_1:+16906271 | Msa0720730:three_prime_UTR |
| GGAGAAGAGCAGCATCTTCA+AGG | 0.442712 | 5_1:+16905842 | Msa0720730:CDS |
| GGAACTTGATCGCTCAAATT+GGG | 0.454245 | 5_1:-16902819 | None:intergenic |
| GTGGACTAAGGAACAAGAAT+TGG | 0.455229 | 5_1:+16903172 | Msa0720730:CDS |
| GAATTCAAACCTGTGATTGT+AGG | 0.458777 | 5_1:-16902594 | None:intergenic |
| AATGCTACATCTACAAAACT+TGG | 0.459493 | 5_1:-16906169 | None:intergenic |
| AAGCAACAAAAGGAAAATCA+AGG | 0.462563 | 5_1:+16905643 | Msa0720730:CDS |
| AAGGTGGAGTAGAAGGGAAA+AGG | 0.464211 | 5_1:+16903045 | Msa0720730:CDS |
| CCCACTGTCGTTTACCCACC+TGG | 0.474091 | 5_1:+16902681 | Msa0720730:CDS |
| CTCAATGTCAGCCTCGATCA+AGG | 0.480704 | 5_1:+16905362 | Msa0720730:CDS |
| CAAACCTGTGATTGTAGGAA+TGG | 0.485333 | 5_1:-16902589 | None:intergenic |
| TGAGTCTCGGTGATCTTCGT+GGG | 0.486579 | 5_1:-16902707 | None:intergenic |
| GAAACGTTCTTCCAGAAATG+AGG | 0.491137 | 5_1:-16903230 | None:intergenic |
| GAGATATTGAGAATTGATGA+AGG | 0.499568 | 5_1:-16905408 | None:intergenic |
| AAGATGCTGCTCTTCTCCTA+AGG | 0.500545 | 5_1:-16905837 | None:intergenic |
| ATGAGTCTCGGTGATCTTCG+TGG | 0.500562 | 5_1:-16902708 | None:intergenic |
| ATCAAGACCCAAAACCGTTA+GGG | 0.500772 | 5_1:+16902785 | Msa0720730:CDS |
| ATCTTCGTGGGGTGCCAGGT+GGG | 0.501330 | 5_1:-16902695 | None:intergenic |
| TAAAGCAGCAAAAGTTGCAT+TGG | 0.501844 | 5_1:+16905918 | Msa0720730:CDS |
| AGAAGAAAGCACGGTGGTGA+TGG | 0.502654 | 5_1:+16902990 | Msa0720730:CDS |
| CGATGGTGGTGGTGAAATAG+TGG | 0.503194 | 5_1:+16903073 | Msa0720730:CDS |
| TTGTACTCCAAAGCAACAAA+AGG | 0.506093 | 5_1:+16905633 | Msa0720730:CDS |
| ATTTCCATTCCTACAATCAC+AGG | 0.507886 | 5_1:+16902585 | Msa0720730:five_prime_UTR |
| TTGCCAACCTTCTTTCCAGT+GGG | 0.512778 | 5_1:-16905448 | None:intergenic |
| GCTCATACCCACTGGAAAGA+AGG | 0.513723 | 5_1:+16905441 | Msa0720730:CDS |
| CAATCTTGTTTAGACTTCCC+AGG | 0.515115 | 5_1:-16905304 | None:intergenic |
| GATCTTCGTGGGGTGCCAGG+TGG | 0.516975 | 5_1:-16902696 | None:intergenic |
| CCAGGTGGGTAAACGACAGT+GGG | 0.518221 | 5_1:-16902681 | None:intergenic |
| TTTACTTGCTTTAGCACAGG+TGG | 0.520137 | 5_1:-16905766 | None:intergenic |
| AGGAAGAGAAAGCGCGGTGG+TGG | 0.525493 | 5_1:+16903134 | Msa0720730:CDS |
| AAGAAAGAAGAGATTGAAGG+TGG | 0.529397 | 5_1:+16903029 | Msa0720730:CDS |
| CAAAGTAAAACTTCAATCAC+AGG | 0.530441 | 5_1:+16902553 | None:intergenic |
| AATAGTGGAAGAGTTGAGGA+AGG | 0.535399 | 5_1:+16903088 | Msa0720730:CDS |
| TTTGCCAACCTTCTTTCCAG+TGG | 0.543425 | 5_1:-16905449 | None:intergenic |
| GGAAAAGAGAAGAAAAGTAG+CGG | 0.543653 | 5_1:+16902936 | Msa0720730:CDS |
| AGGAAGAAAGAAGAGATTGA+AGG | 0.543684 | 5_1:+16903026 | Msa0720730:CDS |
| TAATTGTCTTGTATCCGTCT+AGG | 0.544557 | 5_1:+16906316 | Msa0720730:three_prime_UTR |
| TCTGTAGCTGGAGAAGGAAA+AGG | 0.546804 | 5_1:+16905874 | Msa0720730:CDS |
| GTGAAATAGTGGAAGAGTTG+AGG | 0.549461 | 5_1:+16903084 | Msa0720730:CDS |
| AGATTGAAGGTGGAGTAGAA+GGG | 0.553424 | 5_1:+16903039 | Msa0720730:CDS |
| AAAAGAGAAGAAAAGTAGCG+GGG | 0.557669 | 5_1:+16902938 | Msa0720730:CDS |
| ATCAAGTTCCGTCGCTTAGA+CGG | 0.558259 | 5_1:+16902832 | Msa0720730:CDS |
| GCACGGTGGTGATGGAATTG+AGG | 0.558489 | 5_1:+16902998 | Msa0720730:CDS |
| AAAAGGAAACGCGATGGTGG+TGG | 0.560002 | 5_1:+16903062 | Msa0720730:CDS |
| TTCTTCCAGAAATGAGGACT+AGG | 0.561243 | 5_1:-16903224 | None:intergenic |
| CAATCCCAAATCAATTTCAT+GGG | 0.561849 | 5_1:+16905976 | Msa0720730:CDS |
| AAGTTGAATGTGGTGTGAAA+AGG | 0.575392 | 5_1:+16903114 | Msa0720730:CDS |
| GTGATGGAATTGAGGAAGGG+AGG | 0.575565 | 5_1:+16903006 | Msa0720730:CDS |
| ATTGCCTTTGCCCTTGATCG+AGG | 0.578198 | 5_1:-16905373 | None:intergenic |
| ATGCTACATCTACAAAACTT+GGG | 0.581912 | 5_1:-16906168 | None:intergenic |
| GGTGGTGATGGAATTGAGGA+AGG | 0.582281 | 5_1:+16903002 | Msa0720730:CDS |
| GCCAGGTGGGTAAACGACAG+TGG | 0.583014 | 5_1:-16902682 | None:intergenic |
| ATACCCACTGGAAAGAAGGT+TGG | 0.583152 | 5_1:+16905445 | Msa0720730:CDS |
| GGAGTACAAAGTTCTTGACT+AGG | 0.585184 | 5_1:-16905619 | None:intergenic |
| AAAGAGAAGAAAAGTAGCGG+GGG | 0.585434 | 5_1:+16902939 | Msa0720730:CDS |
| AGTTGCACAAGGGTGGACTA+AGG | 0.587210 | 5_1:+16903160 | Msa0720730:CDS |
| AAAATCTGTTGCAGGTACCT+GGG | 0.591061 | 5_1:+16905287 | Msa0720730:intron |
| AGTAAACTGCTCATACCCAC+TGG | 0.591066 | 5_1:+16905433 | Msa0720730:CDS |
| TCTACTGAACAGATTTGAGA+GGG | 0.591372 | 5_1:-16902625 | None:intergenic |
| AAATATACAAAGATCACAGT+AGG | 0.592908 | 5_1:+16906350 | Msa0720730:three_prime_UTR |
| ATTAGCTCGAGAAAAGCCTA+TGG | 0.593019 | 5_1:-16906057 | None:intergenic |
| GAGAAGAGCAGCATCTTCAA+GGG | 0.593581 | 5_1:+16905843 | Msa0720730:CDS |
| AGATATTGAGAATTGATGAA+GGG | 0.597555 | 5_1:-16905407 | None:intergenic |
| TCAATGTCAGCCTCGATCAA+GGG | 0.602031 | 5_1:+16905363 | Msa0720730:CDS |
| TTCTACTGAACAGATTTGAG+AGG | 0.608641 | 5_1:-16902626 | None:intergenic |
| AGCAACAAAAGGAAAATCAA+GGG | 0.616741 | 5_1:+16905644 | Msa0720730:CDS |
| CTTGATCGAGGCTGACATTG+AGG | 0.617140 | 5_1:-16905361 | None:intergenic |
| TCAGCCTCGATCAAGGGCAA+AGG | 0.617327 | 5_1:+16905369 | Msa0720730:CDS |
| GGGAAAAGGAAACGCGATGG+TGG | 0.617685 | 5_1:+16903059 | Msa0720730:CDS |
| CGACACTTGTTGTTCTGATG+AGG | 0.627606 | 5_1:+16905999 | Msa0720730:CDS |
| GATATTGAGAATTGATGAAG+GGG | 0.627652 | 5_1:-16905406 | None:intergenic |
| TCATGGAGGAGGATGAGTCT+CGG | 0.628860 | 5_1:-16902720 | None:intergenic |
| GAGGACAATGACGATGACAC+TGG | 0.629852 | 5_1:+16906018 | Msa0720730:CDS |
| TTTCAAGCTAAGTACCTAGA+CGG | 0.630475 | 5_1:-16906330 | None:intergenic |
| GGTGGTGGTGAAGTTGCACA+AGG | 0.634091 | 5_1:+16903149 | Msa0720730:CDS |
| AGCTGAAGATGAAACTCCAT+AGG | 0.645407 | 5_1:+16906041 | Msa0720730:CDS |
| CTAGGAGACCGTCTAAGCGA+CGG | 0.647438 | 5_1:-16902840 | None:intergenic |
| AGTTGATCAAAATCATAAAG+GGG | 0.648404 | 5_1:+16905543 | Msa0720730:CDS |
| GTGGTGAAGTTGCACAAGGG+TGG | 0.656463 | 5_1:+16903153 | Msa0720730:CDS |
| GCTGACATTGAGGTGGTGTG+TGG | 0.659104 | 5_1:-16905351 | None:intergenic |
| GAGGTGGTGTGTGGAAGTCG+TGG | 0.661838 | 5_1:-16905342 | None:intergenic |
| GTGGTGATGGAATTGAGGAA+GGG | 0.666606 | 5_1:+16903003 | Msa0720730:CDS |
| AGGAAGGAAGAAGTTGAATG+TGG | 0.671131 | 5_1:+16903104 | Msa0720730:CDS |
| GAAGGGAAAAGGAAACGCGA+TGG | 0.677755 | 5_1:+16903056 | Msa0720730:CDS |
| GAGTCTCGGTGATCTTCGTG+GGG | 0.678324 | 5_1:-16902706 | None:intergenic |
| GTGGTGGTGAAGTTGCACAA+GGG | 0.698386 | 5_1:+16903150 | Msa0720730:CDS |
| GTGAAAAGGAAGAGAAAGCG+CGG | 0.698757 | 5_1:+16903128 | Msa0720730:CDS |
| GATCGAGGCTGACATTGAGG+TGG | 0.699614 | 5_1:-16905358 | None:intergenic |
| AAAAGGAAGAGAAAGCGCGG+TGG | 0.749477 | 5_1:+16903131 | Msa0720730:CDS |
| CAGGTGGGTAAACGACAGTG+GGG | 0.763697 | 5_1:-16902680 | None:intergenic |
| AAAAGGAGAAGAAAGCACGG+TGG | 0.843786 | 5_1:+16902984 | Msa0720730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATTATAATTTCTTGA+TGG | + | chr5_1:16905202-16905221 | Msa0720730:intron | 10.0% |
| !! | TGATATGTGACATAATATTA+TGG | + | chr5_1:16903439-16903458 | Msa0720730:intron | 20.0% |
| !! | AATTATAGTGTTTAATCCAA+TGG | + | chr5_1:16904003-16904022 | Msa0720730:intron | 20.0% |
| !!! | CAACTACAAATATTTTTTCA+TGG | - | chr5_1:16904102-16904121 | None:intergenic | 20.0% |
| !!! | TTTTCTCATATAGTTTTTCT+AGG | - | chr5_1:16904212-16904231 | None:intergenic | 20.0% |
| !! | AATATATAACAGATCGTTTA+TGG | + | chr5_1:16904274-16904293 | Msa0720730:intron | 20.0% |
| !! | TTTAAAGAACAACAAAACAA+AGG | - | chr5_1:16904624-16904643 | None:intergenic | 20.0% |
| !!! | TTAATCCAATAGTTTTATAG+AGG | + | chr5_1:16904802-16904821 | Msa0720730:intron | 20.0% |
| !! | TATATTTAACAGTTACCTTT+AGG | - | chr5_1:16904927-16904946 | None:intergenic | 20.0% |
| !!! | TATTACATTTTTCTTTGTGA+TGG | - | chr5_1:16905185-16905204 | None:intergenic | 20.0% |
| !!! | AAAGTTGATCAAAATCATAA+AGG | + | chr5_1:16905541-16905560 | Msa0720730:CDS | 20.0% |
| !!! | AAGTTGATCAAAATCATAAA+GGG | + | chr5_1:16905542-16905561 | Msa0720730:CDS | 20.0% |
| !! | TTAGTAGAAAAATCAAAGTT+GGG | - | chr5_1:16905589-16905608 | None:intergenic | 20.0% |
| !! | ATTAGTAGAAAAATCAAAGT+TGG | - | chr5_1:16905590-16905609 | None:intergenic | 20.0% |
| !!! | TTTAAAGTTTTAGACATTGT+AGG | + | chr5_1:16906118-16906137 | Msa0720730:three_prime_UTR | 20.0% |
| !!! | AATTTTTCAGATGTACATTT+AGG | + | chr5_1:16906267-16906286 | Msa0720730:three_prime_UTR | 20.0% |
| !!! | CACTTTAACATCATTTTTCT+TGG | - | chr5_1:16902871-16902890 | None:intergenic | 25.0% |
| ! | TTGAATTATGTGTTTAAACG+AGG | + | chr5_1:16903357-16903376 | Msa0720730:intron | 25.0% |
| ! | AAACTGTGAAGAAGATTAAT+GGG | + | chr5_1:16903403-16903422 | Msa0720730:intron | 25.0% |
| ! | AGACAGTATTTAGTGTTATA+AGG | + | chr5_1:16903482-16903501 | Msa0720730:intron | 25.0% |
| ! | GTATTTAGTGTTATAAGGTT+TGG | + | chr5_1:16903487-16903506 | Msa0720730:intron | 25.0% |
| !! | TTCAGTAAGCTAAATTTGTT+TGG | + | chr5_1:16903542-16903561 | Msa0720730:intron | 25.0% |
| !! | ATTGTGAGATTTGAAATTTC+TGG | + | chr5_1:16903737-16903756 | Msa0720730:intron | 25.0% |
| !! | TTGTGAGATTTGAAATTTCT+GGG | + | chr5_1:16903738-16903757 | Msa0720730:intron | 25.0% |
| !! | AGTGATTAATTTTGAGCAAA+TGG | - | chr5_1:16903771-16903790 | None:intergenic | 25.0% |
| ! | GAAAAACAACAACAAAACAA+AGG | - | chr5_1:16903834-16903853 | None:intergenic | 25.0% |
| !!! | TAATCCAATGGTTTTATAGA+AGG | + | chr5_1:16904015-16904034 | Msa0720730:intron | 25.0% |
| ! | ATTACTTGTCCAAATTAATG+AGG | + | chr5_1:16904182-16904201 | Msa0720730:intron | 25.0% |
| ! | TATCAAACTCATTAATCACT+AGG | - | chr5_1:16904247-16904266 | None:intergenic | 25.0% |
| ! | TCTATGTGTTTATTTCCTAA+AGG | + | chr5_1:16904909-16904928 | Msa0720730:intron | 25.0% |
| ! | CTTTCATGTTTATCGAATAT+CGG | + | chr5_1:16904958-16904977 | Msa0720730:intron | 25.0% |
| ! | ATTTCATAAAGATGTCTGAA+TGG | - | chr5_1:16905110-16905129 | None:intergenic | 25.0% |
| !!! | ACAGAATCACTTTTACTTTT+CGG | + | chr5_1:16905131-16905150 | Msa0720730:intron | 25.0% |
| ! | AGATATTGAGAATTGATGAA+GGG | - | chr5_1:16905410-16905429 | None:intergenic | 25.0% |
| !!! | GATTTTGATCAACTTTAAGA+TGG | - | chr5_1:16905537-16905556 | None:intergenic | 25.0% |
| ! | AGTTGATCAAAATCATAAAG+GGG | + | chr5_1:16905543-16905562 | Msa0720730:CDS | 25.0% |
| ! | ATCTTTCATTGCAAATTTGT+AGG | - | chr5_1:16905672-16905691 | None:intergenic | 25.0% |
| ! | ATGGCAATCAATTAAGATTT+AGG | + | chr5_1:16905812-16905831 | Msa0720730:CDS | 25.0% |
| ! | TGGCAATCAATTAAGATTTA+GGG | + | chr5_1:16905813-16905832 | Msa0720730:CDS | 25.0% |
| ! | TCCAAACTTCTATTGTTATA+TGG | + | chr5_1:16906237-16906256 | Msa0720730:three_prime_UTR | 25.0% |
| ! | AAATATACAAAGATCACAGT+AGG | + | chr5_1:16906350-16906369 | Msa0720730:three_prime_UTR | 25.0% |
| CTTGATATGGTTGAAGATTT+GGG | - | chr5_1:16902771-16902790 | None:intergenic | 30.0% | |
| TCTTGATATGGTTGAAGATT+TGG | - | chr5_1:16902772-16902791 | None:intergenic | 30.0% | |
| !! | TCATTTTTCTTGGAGAATCT+AGG | - | chr5_1:16902861-16902880 | None:intergenic | 30.0% |
| GATGTTAAAGTGAGTGAATT+TGG | + | chr5_1:16902879-16902898 | Msa0720730:CDS | 30.0% | |
| TCTTACATACAGAGAAAGAT+AGG | - | chr5_1:16903269-16903288 | None:intergenic | 30.0% | |
| GAAACTGTGAAGAAGATTAA+TGG | + | chr5_1:16903402-16903421 | Msa0720730:intron | 30.0% | |
| ACTAAATACTGTCTACTACA+TGG | - | chr5_1:16903476-16903495 | None:intergenic | 30.0% | |
| CAACACTATTAGTAAATAGC+TGG | + | chr5_1:16903605-16903624 | Msa0720730:intron | 30.0% | |
| ! | CTACTAACTAGTTTAAACCT+AGG | - | chr5_1:16903640-16903659 | None:intergenic | 30.0% |
| !!! | ATGACGATTTTGGTTTATCA+CGG | + | chr5_1:16903796-16903815 | Msa0720730:intron | 30.0% |
| ! | CAAAACAAAGGCATAAGATA+AGG | - | chr5_1:16903822-16903841 | None:intergenic | 30.0% |
| AATGCCTTCTATAAAACCAT+TGG | - | chr5_1:16904022-16904041 | None:intergenic | 30.0% | |
| !! | AAGTTTTATCCCACTAAGTA+GGG | - | chr5_1:16904323-16904342 | None:intergenic | 30.0% |
| ! | CTCAGTAAGCTAAATTTGTT+CGG | + | chr5_1:16904372-16904391 | Msa0720730:intron | 30.0% |
| GAAGTTTCAAATCTCACAAT+TGG | - | chr5_1:16904528-16904547 | None:intergenic | 30.0% | |
| ! | ATTGTGAGATTTGAAACTTC+TGG | + | chr5_1:16904528-16904547 | Msa0720730:intron | 30.0% |
| ! | TTGTGAGATTTGAAACTTCT+GGG | + | chr5_1:16904529-16904548 | Msa0720730:intron | 30.0% |
| ! | CAAAACAAAGGCATAAGATA+AGG | - | chr5_1:16903822-16903841 | None:intergenic | 30.0% |
| TTTCAATAACAACACCATGT+TGG | - | chr5_1:16904886-16904905 | None:intergenic | 30.0% | |
| !!! | TGTTTATCGAATATCGGTTT+TGG | + | chr5_1:16904964-16904983 | Msa0720730:intron | 30.0% |
| GTGAGCATTTGAATTATTCT+GGG | + | chr5_1:16905042-16905061 | Msa0720730:intron | 30.0% | |
| TGAGCATTTGAATTATTCTG+GGG | + | chr5_1:16905043-16905062 | Msa0720730:intron | 30.0% | |
| TAAGCACATATGCACTTATA+TGG | - | chr5_1:16905239-16905258 | None:intergenic | 30.0% | |
| GATATTGAGAATTGATGAAG+GGG | - | chr5_1:16905409-16905428 | None:intergenic | 30.0% | |
| GAGATATTGAGAATTGATGA+AGG | - | chr5_1:16905411-16905430 | None:intergenic | 30.0% | |
| !! | TGATTTTCCTTTTGTTGCTT+TGG | - | chr5_1:16905643-16905662 | None:intergenic | 30.0% |
| AAGCAACAAAAGGAAAATCA+AGG | + | chr5_1:16905643-16905662 | Msa0720730:CDS | 30.0% | |
| AGCAACAAAAGGAAAATCAA+GGG | + | chr5_1:16905644-16905663 | Msa0720730:CDS | 30.0% | |
| AAGTCTCTTTCTAGATTTAG+TGG | + | chr5_1:16905715-16905734 | Msa0720730:CDS | 30.0% | |
| !!! | TTTTTTACTTGCTTTAGCAC+AGG | - | chr5_1:16905772-16905791 | None:intergenic | 30.0% |
| GCTAAAGCAAGTAAAAAACA+AGG | + | chr5_1:16905774-16905793 | Msa0720730:CDS | 30.0% | |
| AATTAAGATTTAGGGACCTT+AGG | + | chr5_1:16905821-16905840 | Msa0720730:CDS | 30.0% | |
| CAATCCCAAATCAATTTCAT+GGG | + | chr5_1:16905976-16905995 | Msa0720730:CDS | 30.0% | |
| ATGCTACATCTACAAAACTT+GGG | - | chr5_1:16906171-16906190 | None:intergenic | 30.0% | |
| AATGCTACATCTACAAAACT+TGG | - | chr5_1:16906172-16906191 | None:intergenic | 30.0% | |
| GCCATATAACAATAGAAGTT+TGG | - | chr5_1:16906241-16906260 | None:intergenic | 30.0% | |
| TTTCAGATGTACATTTAGGT+TGG | + | chr5_1:16906271-16906290 | Msa0720730:three_prime_UTR | 30.0% | |
| ! | TTCAGATGTACATTTAGGTT+GGG | + | chr5_1:16906272-16906291 | Msa0720730:three_prime_UTR | 30.0% |
| ATTTCCATTCCTACAATCAC+AGG | + | chr5_1:16902585-16902604 | Msa0720730:five_prime_UTR | 35.0% | |
| GAATTCAAACCTGTGATTGT+AGG | - | chr5_1:16902597-16902616 | None:intergenic | 35.0% | |
| TCTACTGAACAGATTTGAGA+GGG | - | chr5_1:16902628-16902647 | None:intergenic | 35.0% | |
| TTCTACTGAACAGATTTGAG+AGG | - | chr5_1:16902629-16902648 | None:intergenic | 35.0% | |
| ! | TGTTTGGCATTTTCACAAAC+AGG | - | chr5_1:16902656-16902675 | None:intergenic | 35.0% |
| !! | TGGTTGAAGATTTGGGTTTT+GGG | - | chr5_1:16902764-16902783 | None:intergenic | 35.0% |
| !! | ATGGTTGAAGATTTGGGTTT+TGG | - | chr5_1:16902765-16902784 | None:intergenic | 35.0% |
| ! | TTTCTTACCCTAACGGTTTT+GGG | - | chr5_1:16902795-16902814 | None:intergenic | 35.0% |
| ! | TTTTCTTACCCTAACGGTTT+TGG | - | chr5_1:16902796-16902815 | None:intergenic | 35.0% |
| ! | TGTTTTTCTCATCGAATCAC+AGG | - | chr5_1:16902907-16902926 | None:intergenic | 35.0% |
| TGTGATTCGATGAGAAAAAC+AGG | + | chr5_1:16902906-16902925 | Msa0720730:CDS | 35.0% | |
| GGAAAAGAGAAGAAAAGTAG+CGG | + | chr5_1:16902936-16902955 | Msa0720730:CDS | 35.0% | |
| GAAAAGAGAAGAAAAGTAGC+GGG | + | chr5_1:16902937-16902956 | Msa0720730:CDS | 35.0% | |
| AAAAGAGAAGAAAAGTAGCG+GGG | + | chr5_1:16902938-16902957 | Msa0720730:CDS | 35.0% | |
| AGAAAAAGGAGAAGAAAGCA+CGG | + | chr5_1:16902981-16903000 | Msa0720730:CDS | 35.0% | |
| AGGAAGAAAGAAGAGATTGA+AGG | + | chr5_1:16903026-16903045 | Msa0720730:CDS | 35.0% | |
| AAGAAAGAAGAGATTGAAGG+TGG | + | chr5_1:16903029-16903048 | Msa0720730:CDS | 35.0% | |
| AAGTTGAATGTGGTGTGAAA+AGG | + | chr5_1:16903114-16903133 | Msa0720730:CDS | 35.0% | |
| ! | TGTGAAGAAGATTAATGGGT+TGG | + | chr5_1:16903407-16903426 | Msa0720730:intron | 35.0% |
| AAATTCGTCAAGTATCAGCA+AGG | + | chr5_1:16903580-16903599 | Msa0720730:intron | 35.0% | |
| AGTAGTGTGTATGTCTAGAA+AGG | + | chr5_1:16903655-16903674 | Msa0720730:intron | 35.0% | |
| ! | TCACTCAAAGATGACGATTT+TGG | + | chr5_1:16903786-16903805 | Msa0720730:intron | 35.0% |
| !! | TTTATAGAAGGCATTGCATC+AGG | + | chr5_1:16904027-16904046 | Msa0720730:intron | 35.0% |
| !! | TTATAGAAGGCATTGCATCA+GGG | + | chr5_1:16904028-16904047 | Msa0720730:intron | 35.0% |
| CTAGGTCTTCCTCATTAATT+TGG | - | chr5_1:16904194-16904213 | None:intergenic | 35.0% | |
| !! | CAAGTTTTATCCCACTAAGT+AGG | - | chr5_1:16904324-16904343 | None:intergenic | 35.0% |
| CTACTTAGTGGGATAAAACT+TGG | + | chr5_1:16904322-16904341 | Msa0720730:intron | 35.0% | |
| ! | CGAACAAATTTAGCTTACTG+AGG | - | chr5_1:16904374-16904393 | None:intergenic | 35.0% |
| CAACACAATTGGTAAATAGC+TGG | + | chr5_1:16904428-16904447 | Msa0720730:intron | 35.0% | |
| ACTAGTTAGCGTGTATAGAA+AGG | + | chr5_1:16904471-16904490 | Msa0720730:intron | 35.0% | |
| TCGTCTTTGAGTGAATCTTT+CGG | - | chr5_1:16904570-16904589 | None:intergenic | 35.0% | |
| TCACTCAAAGACGATAAGTT+TGG | + | chr5_1:16904576-16904595 | Msa0720730:intron | 35.0% | |
| TGCAGCCTCTATAAAACTAT+TGG | - | chr5_1:16904810-16904829 | None:intergenic | 35.0% | |
| TAACAACACCATGTTGGAAA+CGG | - | chr5_1:16904880-16904899 | None:intergenic | 35.0% | |
| GGTGAGCATTTGAATTATTC+TGG | + | chr5_1:16905041-16905060 | Msa0720730:intron | 35.0% | |
| TGTACAGCAATTTCAATGAC+CGG | - | chr5_1:16905268-16905287 | None:intergenic | 35.0% | |
| TTCTGAGTAACAATGCTCTT+TGG | - | chr5_1:16905490-16905509 | None:intergenic | 35.0% | |
| TTGTACTCCAAAGCAACAAA+AGG | + | chr5_1:16905633-16905652 | Msa0720730:CDS | 35.0% | |
| AAGGTGCAGCATGAAAAATA+TGG | + | chr5_1:16905793-16905812 | Msa0720730:CDS | 35.0% | |
| AAAAAATCTGTAGCTGGAGA+AGG | + | chr5_1:16905868-16905887 | Msa0720730:CDS | 35.0% | |
| TAAAGCAGCAAAAGTTGCAT+TGG | + | chr5_1:16905918-16905937 | Msa0720730:CDS | 35.0% | |
| GCAATCCCAAATCAATTTCA+TGG | + | chr5_1:16905975-16905994 | Msa0720730:CDS | 35.0% | |
| TAATTGTCTTGTATCCGTCT+AGG | + | chr5_1:16906316-16906335 | Msa0720730:three_prime_UTR | 35.0% | |
| TTTCAAGCTAAGTACCTAGA+CGG | - | chr5_1:16906333-16906352 | None:intergenic | 35.0% | |
| CAAACCTGTGATTGTAGGAA+TGG | - | chr5_1:16902592-16902611 | None:intergenic | 40.0% | |
| !! | GGTTGAAGATTTGGGTTTTG+GGG | - | chr5_1:16902763-16902782 | None:intergenic | 40.0% |
| !!! | AACGGTTTTGGGTCTTGATA+TGG | - | chr5_1:16902784-16902803 | None:intergenic | 40.0% |
| TATCAAGACCCAAAACCGTT+AGG | + | chr5_1:16902784-16902803 | Msa0720730:CDS | 40.0% | |
| ATCAAGACCCAAAACCGTTA+GGG | + | chr5_1:16902785-16902804 | Msa0720730:CDS | 40.0% | |
| ! | GGGTGATTTTCTTACCCTAA+CGG | - | chr5_1:16902802-16902821 | None:intergenic | 40.0% |
| GGAACTTGATCGCTCAAATT+GGG | - | chr5_1:16902822-16902841 | None:intergenic | 40.0% | |
| ATGAGAAAAACAGGTCGTGA+AGG | + | chr5_1:16902915-16902934 | Msa0720730:CDS | 40.0% | |
| AAAGAGAAGAAAAGTAGCGG+GGG | + | chr5_1:16902939-16902958 | Msa0720730:CDS | 40.0% | |
| TGGTTGAAGGTGGTAGAAAA+AGG | + | chr5_1:16902967-16902986 | Msa0720730:CDS | 40.0% | |
| AGATTGAAGGTGGAGTAGAA+GGG | + | chr5_1:16903039-16903058 | Msa0720730:CDS | 40.0% | |
| ! | GTGAAATAGTGGAAGAGTTG+AGG | + | chr5_1:16903084-16903103 | Msa0720730:CDS | 40.0% |
| ! | AATAGTGGAAGAGTTGAGGA+AGG | + | chr5_1:16903088-16903107 | Msa0720730:CDS | 40.0% |
| AGGAAGGAAGAAGTTGAATG+TGG | + | chr5_1:16903104-16903123 | Msa0720730:CDS | 40.0% | |
| ! | GTGGACTAAGGAACAAGAAT+TGG | + | chr5_1:16903172-16903191 | Msa0720730:CDS | 40.0% |
| CAAAACCTAGTCCTCATTTC+TGG | + | chr5_1:16903219-16903238 | Msa0720730:CDS | 40.0% | |
| TTCTTCCAGAAATGAGGACT+AGG | - | chr5_1:16903227-16903246 | None:intergenic | 40.0% | |
| GAAACGTTCTTCCAGAAATG+AGG | - | chr5_1:16903233-16903252 | None:intergenic | 40.0% | |
| ATAGCTGGATAATGTGTCCT+AGG | + | chr5_1:16903620-16903639 | Msa0720730:intron | 40.0% | |
| ATGTCTAGAAAGGTCTTCTC+AGG | + | chr5_1:16903665-16903684 | Msa0720730:intron | 40.0% | |
| ACTAATCTGCGCTGAGATTA+AGG | - | chr5_1:16903712-16903731 | None:intergenic | 40.0% | |
| ! | CTGTTTTCACATGGCATTTC+AGG | - | chr5_1:16903880-16903899 | None:intergenic | 40.0% |
| GCTGCACACAATGATAAAGA+AGG | + | chr5_1:16903915-16903934 | Msa0720730:intron | 40.0% | |
| !! | ATAAAGAAGGCATTGCAGCA+TGG | + | chr5_1:16903928-16903947 | Msa0720730:intron | 40.0% |
| AGAGGTAGACACATACATTG+CGG | + | chr5_1:16904056-16904075 | Msa0720730:intron | 40.0% | |
| TTGTAGTTGACCCTACTTAG+TGG | + | chr5_1:16904310-16904329 | Msa0720730:intron | 40.0% | |
| TGTAGTTGACCCTACTTAGT+GGG | + | chr5_1:16904311-16904330 | Msa0720730:intron | 40.0% | |
| CATACTATGAAACCCGTCAA+GGG | + | chr5_1:16904395-16904414 | Msa0720730:intron | 40.0% | |
| GCAGCAAAGTTCAACACAAT+TGG | + | chr5_1:16904417-16904436 | Msa0720730:intron | 40.0% | |
| ! | ACGCTAACTAGTTTGAACCT+AGG | - | chr5_1:16904463-16904482 | None:intergenic | 40.0% |
| CGTCTTTGAGTGAATCTTTC+GGG | - | chr5_1:16904569-16904588 | None:intergenic | 40.0% | |
| !! | TGATAGAGAAGGCATTGTAG+TGG | + | chr5_1:16904715-16904734 | Msa0720730:intron | 40.0% |
| !! | GATAGAGAAGGCATTGTAGT+GGG | + | chr5_1:16904716-16904735 | Msa0720730:intron | 40.0% |
| AGATCCAACAGTTACCATAC+GGG | - | chr5_1:16904839-16904858 | None:intergenic | 40.0% | |
| GAGATCCAACAGTTACCATA+CGG | - | chr5_1:16904840-16904859 | None:intergenic | 40.0% | |
| GATGTTAACCGTTTCCAACA+TGG | + | chr5_1:16904869-16904888 | Msa0720730:intron | 40.0% | |
| TCAAGCTTGCAATTGCATGA+GGG | + | chr5_1:16905066-16905085 | Msa0720730:intron | 40.0% | |
| GCATATGTGCTTATTTGCTC+CGG | + | chr5_1:16905246-16905265 | Msa0720730:intron | 40.0% | |
| TGCTGTACAAAATCTGTTGC+AGG | + | chr5_1:16905279-16905298 | Msa0720730:intron | 40.0% | |
| AAAATCTGTTGCAGGTACCT+GGG | + | chr5_1:16905287-16905306 | Msa0720730:intron | 40.0% | |
| ! | CAATCTTGTTTAGACTTCCC+AGG | - | chr5_1:16905307-16905326 | None:intergenic | 40.0% |
| GGAGTACAAAGTTCTTGACT+AGG | - | chr5_1:16905622-16905641 | None:intergenic | 40.0% | |
| TCTAGATTTAGTGGCTCATC+AGG | + | chr5_1:16905724-16905743 | Msa0720730:CDS | 40.0% | |
| TTTACTTGCTTTAGCACAGG+TGG | - | chr5_1:16905769-16905788 | None:intergenic | 40.0% | |
| AGGGCAAAAAAATCTGTAGC+TGG | + | chr5_1:16905862-16905881 | Msa0720730:CDS | 40.0% | |
| ! | GTCGCCCATGAAATTGATTT+GGG | - | chr5_1:16905983-16906002 | None:intergenic | 40.0% |
| TGTCGCCCATGAAATTGATT+TGG | - | chr5_1:16905984-16906003 | None:intergenic | 40.0% | |
| AGCTGAAGATGAAACTCCAT+AGG | + | chr5_1:16906041-16906060 | Msa0720730:CDS | 40.0% | |
| ATTAGCTCGAGAAAAGCCTA+TGG | - | chr5_1:16906060-16906079 | None:intergenic | 40.0% | |
| !!! | GGTTGTTGTTTTCATGGAGG+AGG | - | chr5_1:16902734-16902753 | None:intergenic | 45.0% |
| !!! | TGGGGTTGTTGTTTTCATGG+AGG | - | chr5_1:16902737-16902756 | None:intergenic | 45.0% |
| !!! | TGGTGGGGTTGTTGTTTTCA+TGG | - | chr5_1:16902740-16902759 | None:intergenic | 45.0% |
| !!! | TGAAGATTTGGGTTTTGGGG+TGG | - | chr5_1:16902760-16902779 | None:intergenic | 45.0% |
| CGGAACTTGATCGCTCAAAT+TGG | - | chr5_1:16902823-16902842 | None:intergenic | 45.0% | |
| ATCAAGTTCCGTCGCTTAGA+CGG | + | chr5_1:16902832-16902851 | Msa0720730:CDS | 45.0% | |
| ! | AAAAGGAGAAGAAAGCACGG+TGG | + | chr5_1:16902984-16903003 | Msa0720730:CDS | 45.0% |
| !! | GTGGTGATGGAATTGAGGAA+GGG | + | chr5_1:16903003-16903022 | Msa0720730:CDS | 45.0% |
| GAGATTGAAGGTGGAGTAGA+AGG | + | chr5_1:16903038-16903057 | Msa0720730:CDS | 45.0% | |
| AAGGTGGAGTAGAAGGGAAA+AGG | + | chr5_1:16903045-16903064 | Msa0720730:CDS | 45.0% | |
| GTGAAAAGGAAGAGAAAGCG+CGG | + | chr5_1:16903128-16903147 | Msa0720730:CDS | 45.0% | |
| CTGGAAGAACGTTTCGAAAC+TGG | + | chr5_1:16903238-16903257 | Msa0720730:CDS | 45.0% | |
| TCTCAGGAGAGTCAAAACAC+AGG | + | chr5_1:16903681-16903700 | Msa0720730:intron | 45.0% | |
| GCATACTATGAAACCCGTCA+AGG | + | chr5_1:16904394-16904413 | Msa0720730:intron | 45.0% | |
| TTGAACTTTGCTGCCCTTGA+CGG | - | chr5_1:16904411-16904430 | None:intergenic | 45.0% | |
| GTGTATAGAAAGGCCATGTC+CGG | + | chr5_1:16904481-16904500 | Msa0720730:intron | 45.0% | |
| GAGTGAATCTTTCGGGCAAA+TGG | - | chr5_1:16904562-16904581 | None:intergenic | 45.0% | |
| GTGGCACACAATGATAGAGA+AGG | + | chr5_1:16904704-16904723 | Msa0720730:intron | 45.0% | |
| TGCGGTCTCTATAGAACTGT+TGG | + | chr5_1:16904764-16904783 | Msa0720730:intron | 45.0% | |
| ATGTCCCGTATGGTAACTGT+TGG | + | chr5_1:16904832-16904851 | Msa0720730:intron | 45.0% | |
| AACTGTTGGATCTCGACGTT+TGG | + | chr5_1:16904846-16904865 | Msa0720730:intron | 45.0% | |
| ACTGTTGGATCTCGACGTTT+GGG | + | chr5_1:16904847-16904866 | Msa0720730:intron | 45.0% | |
| CTAGATAGATCACGTGGTCA+TGG | - | chr5_1:16905022-16905041 | None:intergenic | 45.0% | |
| CATGACCACGTGATCTATCT+AGG | + | chr5_1:16905020-16905039 | Msa0720730:intron | 45.0% | |
| GTCAAGCTTGCAATTGCATG+AGG | + | chr5_1:16905065-16905084 | Msa0720730:intron | 45.0% | |
| CAAGCTTGCAATTGCATGAG+GGG | + | chr5_1:16905067-16905086 | Msa0720730:intron | 45.0% | |
| CAAAATCTGTTGCAGGTACC+TGG | + | chr5_1:16905286-16905305 | Msa0720730:intron | 45.0% | |
| TCAATGTCAGCCTCGATCAA+GGG | + | chr5_1:16905363-16905382 | Msa0720730:CDS | 45.0% | |
| GTGGGTATGAGCAGTTTACT+TGG | - | chr5_1:16905433-16905452 | None:intergenic | 45.0% | |
| AGTAAACTGCTCATACCCAC+TGG | + | chr5_1:16905433-16905452 | Msa0720730:CDS | 45.0% | |
| ATACCCACTGGAAAGAAGGT+TGG | + | chr5_1:16905445-16905464 | Msa0720730:CDS | 45.0% | |
| TTGCCAACCTTCTTTCCAGT+GGG | - | chr5_1:16905451-16905470 | None:intergenic | 45.0% | |
| TTTGCCAACCTTCTTTCCAG+TGG | - | chr5_1:16905452-16905471 | None:intergenic | 45.0% | |
| AAGATGCTGCTCTTCTCCTA+AGG | - | chr5_1:16905840-16905859 | None:intergenic | 45.0% | |
| GAGAAGAGCAGCATCTTCAA+GGG | + | chr5_1:16905843-16905862 | Msa0720730:CDS | 45.0% | |
| TCTGTAGCTGGAGAAGGAAA+AGG | + | chr5_1:16905874-16905893 | Msa0720730:CDS | 45.0% | |
| !! | CGACACTTGTTGTTCTGATG+AGG | + | chr5_1:16905999-16906018 | Msa0720730:CDS | 45.0% |
| ACGACAGTGGGGTTTCTGTT+TGG | - | chr5_1:16902672-16902691 | None:intergenic | 50.0% | |
| TGAGTCTCGGTGATCTTCGT+GGG | - | chr5_1:16902710-16902729 | None:intergenic | 50.0% | |
| ATGAGTCTCGGTGATCTTCG+TGG | - | chr5_1:16902711-16902730 | None:intergenic | 50.0% | |
| TCATGGAGGAGGATGAGTCT+CGG | - | chr5_1:16902723-16902742 | None:intergenic | 50.0% | |
| !!! | ATTTGGGTTTTGGGGTGGTG+GGG | - | chr5_1:16902755-16902774 | None:intergenic | 50.0% |
| !!! | GATTTGGGTTTTGGGGTGGT+GGG | - | chr5_1:16902756-16902775 | None:intergenic | 50.0% |
| !!! | AGATTTGGGTTTTGGGGTGG+TGG | - | chr5_1:16902757-16902776 | None:intergenic | 50.0% |
| ! | AGAAGAAAGCACGGTGGTGA+TGG | + | chr5_1:16902990-16903009 | Msa0720730:CDS | 50.0% |
| !! | GGTGGTGATGGAATTGAGGA+AGG | + | chr5_1:16903002-16903021 | Msa0720730:CDS | 50.0% |
| ! | GTGATGGAATTGAGGAAGGG+AGG | + | chr5_1:16903006-16903025 | Msa0720730:CDS | 50.0% |
| GAAGGGAAAAGGAAACGCGA+TGG | + | chr5_1:16903056-16903075 | Msa0720730:CDS | 50.0% | |
| ! | AAAAGGAAACGCGATGGTGG+TGG | + | chr5_1:16903062-16903081 | Msa0720730:CDS | 50.0% |
| !! | CGATGGTGGTGGTGAAATAG+TGG | + | chr5_1:16903073-16903092 | Msa0720730:CDS | 50.0% |
| ! | AAAAGGAAGAGAAAGCGCGG+TGG | + | chr5_1:16903131-16903150 | Msa0720730:CDS | 50.0% |
| ! | GTGGTGGTGAAGTTGCACAA+GGG | + | chr5_1:16903150-16903169 | Msa0720730:CDS | 50.0% |
| !! | AGTTGCACAAGGGTGGACTA+AGG | + | chr5_1:16903160-16903179 | Msa0720730:CDS | 50.0% |
| ! | GCGGTTGCACTGTTTTCACA+TGG | - | chr5_1:16903889-16903908 | None:intergenic | 50.0% |
| TGAACTTTGCTGCCCTTGAC+GGG | - | chr5_1:16904410-16904429 | None:intergenic | 50.0% | |
| ATAGCTGGATCGTGTGTCCT+AGG | + | chr5_1:16904443-16904462 | Msa0720730:intron | 50.0% | |
| ACTAATCCGCTCTGACTCTC+CGG | - | chr5_1:16904503-16904522 | None:intergenic | 50.0% | |
| !! | GCATTGTAGTGGGCTTACAG+CGG | + | chr5_1:16904726-16904745 | Msa0720730:intron | 50.0% |
| TATAGAGACCGCACTGTCTG+CGG | - | chr5_1:16904757-16904776 | None:intergenic | 50.0% | |
| GCTCACCTAGATAGATCACG+TGG | - | chr5_1:16905028-16905047 | None:intergenic | 50.0% | |
| CTTGATCGAGGCTGACATTG+AGG | - | chr5_1:16905364-16905383 | None:intergenic | 50.0% | |
| CTCAATGTCAGCCTCGATCA+AGG | + | chr5_1:16905362-16905381 | Msa0720730:CDS | 50.0% | |
| ATTGCCTTTGCCCTTGATCG+AGG | - | chr5_1:16905376-16905395 | None:intergenic | 50.0% | |
| GCTCATACCCACTGGAAAGA+AGG | + | chr5_1:16905441-16905460 | Msa0720730:CDS | 50.0% | |
| GGAGAAGAGCAGCATCTTCA+AGG | + | chr5_1:16905842-16905861 | Msa0720730:CDS | 50.0% | |
| GAGGACAATGACGATGACAC+TGG | + | chr5_1:16906018-16906037 | Msa0720730:CDS | 50.0% | |
| CAGGTGGGTAAACGACAGTG+GGG | - | chr5_1:16902683-16902702 | None:intergenic | 55.0% | |
| CCAGGTGGGTAAACGACAGT+GGG | - | chr5_1:16902684-16902703 | None:intergenic | 55.0% | |
| GAGTCTCGGTGATCTTCGTG+GGG | - | chr5_1:16902709-16902728 | None:intergenic | 55.0% | |
| CTAGGAGACCGTCTAAGCGA+CGG | - | chr5_1:16902843-16902862 | None:intergenic | 55.0% | |
| ! | GAAAAGTAGCGGGGGAGTTG+TGG | + | chr5_1:16902947-16902966 | Msa0720730:CDS | 55.0% |
| !! | GCACGGTGGTGATGGAATTG+AGG | + | chr5_1:16902998-16903017 | Msa0720730:CDS | 55.0% |
| GGGAAAAGGAAACGCGATGG+TGG | + | chr5_1:16903059-16903078 | Msa0720730:CDS | 55.0% | |
| ! | GGTGGTGGTGAAGTTGCACA+AGG | + | chr5_1:16903149-16903168 | Msa0720730:CDS | 55.0% |
| GTGGTGAAGTTGCACAAGGG+TGG | + | chr5_1:16903153-16903172 | Msa0720730:CDS | 55.0% | |
| CATTGTGTGCAGCATCGCAG+CGG | - | chr5_1:16903908-16903927 | None:intergenic | 55.0% | |
| ! | CATTGCAGCATGGCTTGCAG+TGG | + | chr5_1:16903938-16903957 | Msa0720730:intron | 55.0% |
| CATTGCATCAGGGCTTGCAG+AGG | + | chr5_1:16904038-16904057 | Msa0720730:intron | 55.0% | |
| CATTGTGTGCCACATCGCAG+CGG | - | chr5_1:16904697-16904716 | None:intergenic | 55.0% | |
| AGGCTGCACAATGTCCCGTA+TGG | + | chr5_1:16904822-16904841 | Msa0720730:intron | 55.0% | |
| GCTGACATTGAGGTGGTGTG+TGG | - | chr5_1:16905354-16905373 | None:intergenic | 55.0% | |
| GATCGAGGCTGACATTGAGG+TGG | - | chr5_1:16905361-16905380 | None:intergenic | 55.0% | |
| TCAGCCTCGATCAAGGGCAA+AGG | + | chr5_1:16905369-16905388 | Msa0720730:CDS | 55.0% | |
| ! | CCCACTGTCGTTTACCCACC+TGG | + | chr5_1:16902681-16902700 | Msa0720730:CDS | 60.0% |
| GCCAGGTGGGTAAACGACAG+TGG | - | chr5_1:16902685-16902704 | None:intergenic | 60.0% | |
| ! | ATCTTCGTGGGGTGCCAGGT+GGG | - | chr5_1:16902698-16902717 | None:intergenic | 60.0% |
| AGCGGGGGAGTTGTGGTTGA+AGG | + | chr5_1:16902954-16902973 | Msa0720730:CDS | 60.0% | |
| GGGGGAGTTGTGGTTGAAGG+TGG | + | chr5_1:16902957-16902976 | Msa0720730:CDS | 60.0% | |
| ! | AGGAAGAGAAAGCGCGGTGG+TGG | + | chr5_1:16903134-16903153 | Msa0720730:CDS | 60.0% |
| TGGTAGAGTCGCACGCAGTG+TGG | + | chr5_1:16903958-16903977 | Msa0720730:intron | 60.0% | |
| CCATGTCCGGAGAGTCAGAG+CGG | + | chr5_1:16904494-16904513 | Msa0720730:intron | 60.0% | |
| GAGGTGGTGTGTGGAAGTCG+TGG | - | chr5_1:16905345-16905364 | None:intergenic | 60.0% | |
| ! | GATCTTCGTGGGGTGCCAGG+TGG | - | chr5_1:16902699-16902718 | None:intergenic | 65.0% |
| ! | GGTGATCTTCGTGGGGTGCC+AGG | - | chr5_1:16902702-16902721 | None:intergenic | 65.0% |
| CCGCTCTGACTCTCCGGACA+TGG | - | chr5_1:16904497-16904516 | None:intergenic | 65.0% | |
| ACAGTGCAGCCGCTGCGATG+TGG | + | chr5_1:16904685-16904704 | Msa0720730:intron | 65.0% | |
| CGGTAGAGCCGCAGACAGTG+CGG | + | chr5_1:16904746-16904765 | Msa0720730:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 16902563 | 16906378 | 16902563 | ID=Msa0720730;Name=Msa0720730 |
| chr5_1 | mRNA | 16902563 | 16906378 | 16902563 | ID=Msa0720730-mRNA-1;Parent=Msa0720730;Name=Msa0720730-mRNA-1;_AED=0.00;_eAED=0.00;_QI=103|1|1|1|1|1|2|316|451 |
| chr5_1 | exon | 16902563 | 16903259 | 16902563 | ID=Msa0720730-mRNA-1:exon:6421;Parent=Msa0720730-mRNA-1 |
| chr5_1 | exon | 16905301 | 16906378 | 16905301 | ID=Msa0720730-mRNA-1:exon:6422;Parent=Msa0720730-mRNA-1 |
| chr5_1 | five_prime_UTR | 16902563 | 16902665 | 16902563 | ID=Msa0720730-mRNA-1:five_prime_utr;Parent=Msa0720730-mRNA-1 |
| chr5_1 | CDS | 16902666 | 16903259 | 16902666 | ID=Msa0720730-mRNA-1:cds;Parent=Msa0720730-mRNA-1 |
| chr5_1 | CDS | 16905301 | 16906062 | 16905301 | ID=Msa0720730-mRNA-1:cds;Parent=Msa0720730-mRNA-1 |
| chr5_1 | three_prime_UTR | 16906063 | 16906378 | 16906063 | ID=Msa0720730-mRNA-1:three_prime_utr;Parent=Msa0720730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
