Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804380 | XP_003598092.2 | 100.000 | 158 | 0 | 0 | 25 | 182 | 26 | 183 | 7.87e-108 | 316 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804380 | G7J0A0 | 100.000 | 158 | 0 | 0 | 25 | 182 | 26 | 183 | 3.76e-108 | 316 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0488170 | Msa0804380 | 0.865639 | 5.105095e-65 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804380 | MtrunA17_Chr3g0077951 | 96.407 | 167 | 6 | 0 | 16 | 182 | 13 | 179 | 3.30e-111 | 314 |
| Msa0804380 | MtrunA17_Chr4g0013571 | 65.497 | 171 | 59 | 0 | 12 | 182 | 8 | 178 | 7.40e-75 | 222 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804380 | AT1G33490.1 | 75.000 | 144 | 36 | 0 | 25 | 168 | 26 | 169 | 2.50e-74 | 221 |
| Msa0804380 | AT4G10140.1 | 66.879 | 157 | 52 | 0 | 25 | 181 | 26 | 182 | 3.92e-70 | 211 |
| Msa0804380 | AT1G33490.2 | 72.441 | 127 | 35 | 0 | 42 | 168 | 1 | 127 | 3.03e-62 | 189 |
| Msa0804380 | AT1G33490.3 | 79.048 | 105 | 22 | 0 | 25 | 129 | 26 | 130 | 1.37e-55 | 172 |
Find 46 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGCATCACCTTTCATTCT+TGG | 0.150625 | 5_3:+20247032 | Msa0804380:CDS |
| TATGATGCTCACGAACTTTA+TGG | 0.165738 | 5_3:+20245128 | Msa0804380:CDS |
| TTAGATATGAAATGTCTTTA+TGG | 0.166671 | 5_3:+20244149 | Msa0804380:exon |
| AAGACTTGTTCCTGTTTATA+AGG | 0.263804 | 5_3:+20247258 | Msa0804380:three_prime_UTR |
| ATTGAATTACAGTTATCTTT+AGG | 0.282888 | 5_3:-20244210 | None:intergenic |
| TTTAAAGCATCAGATGTTAA+AGG | 0.291346 | 5_3:-20245883 | None:intergenic |
| GCAGAGAAAGCCAACTGATT+TGG | 0.316448 | 5_3:-20244264 | None:intergenic |
| TTCAAACTCTTCTGATAAAC+AGG | 0.321433 | 5_3:+20247363 | Msa0804380:three_prime_UTR |
| TTGGCTTTCTCTGCTGCTCT+TGG | 0.354022 | 5_3:+20244273 | Msa0804380:CDS |
| TTAAAGCATCAGATGTTAAA+GGG | 0.367451 | 5_3:-20245882 | None:intergenic |
| GCTTTAAAGAAAGTTCTTAC+TGG | 0.374819 | 5_3:+20245898 | Msa0804380:CDS |
| GCATATTACCTCAACTCTAT+TGG | 0.377682 | 5_3:-20245156 | None:intergenic |
| GTTATGCACATGTTCTTTAG+TGG | 0.383367 | 5_3:+20247211 | Msa0804380:three_prime_UTR |
| TTAAAATTCAAGTATATTGT+TGG | 0.396178 | 5_3:+20247420 | Msa0804380:three_prime_UTR |
| TCAAGTATATTGTTGGCATA+TGG | 0.403219 | 5_3:+20247427 | Msa0804380:three_prime_UTR |
| AAGAATCTCACCTTATAAAC+AGG | 0.404591 | 5_3:-20247268 | None:intergenic |
| GCTGCTCTTGGCATTACATT+GGG | 0.408552 | 5_3:+20244285 | Msa0804380:CDS |
| CGCTTCGGTGAATTTATGTC+TGG | 0.418134 | 5_3:+20245847 | Msa0804380:CDS |
| TGCTGCTCTTGGCATTACAT+TGG | 0.419462 | 5_3:+20244284 | Msa0804380:CDS |
| ATTGTTCCGTTTCTACGCTT+CGG | 0.434543 | 5_3:+20245832 | Msa0804380:CDS |
| AATTACAACATACCACATAT+AGG | 0.470933 | 5_3:-20244315 | None:intergenic |
| TCCTTTCACACTCAGAACTA+AGG | 0.471434 | 5_3:+20247138 | Msa0804380:CDS |
| ACACTCAGAACTAAGGTTGA+AGG | 0.480792 | 5_3:+20247145 | Msa0804380:CDS |
| TTGGGAGTATTTCCTATATG+TGG | 0.488852 | 5_3:+20244303 | Msa0804380:CDS |
| TTCGGTGAATTTATGTCTGG+CGG | 0.488963 | 5_3:+20245850 | Msa0804380:CDS |
| AATTCACCGAAGCGTAGAAA+CGG | 0.492649 | 5_3:-20245838 | None:intergenic |
| AAACAGGTTCATAGAGATAG+AGG | 0.509858 | 5_3:+20247379 | Msa0804380:three_prime_UTR |
| ACCTTAGTTCTGAGTGTGAA+AGG | 0.513975 | 5_3:-20247139 | None:intergenic |
| GGAATGGCTATTGCATTGCT+TGG | 0.517080 | 5_3:+20245084 | Msa0804380:CDS |
| CACTGTATTCCTCTGCGGAA+TGG | 0.522128 | 5_3:+20245068 | Msa0804380:CDS |
| TCGGTGAATTTATGTCTGGC+GGG | 0.529549 | 5_3:+20245851 | Msa0804380:CDS |
| TGATATCAAGCATAAATAAG+AGG | 0.531094 | 5_3:-20244097 | None:intergenic |
| ACAGCATACTTTACAACATA+CGG | 0.557420 | 5_3:-20247294 | None:intergenic |
| AAGTTCGTGAGCATCATAGT+TGG | 0.557950 | 5_3:-20245123 | None:intergenic |
| TGAACTAGAATTCTGAACAA+TGG | 0.566355 | 5_3:-20247077 | None:intergenic |
| TATAGTGCTCCAAGAATGAA+AGG | 0.570927 | 5_3:-20247041 | None:intergenic |
| TCAGATGTTAAAGGGAAATG+AGG | 0.588588 | 5_3:-20245874 | None:intergenic |
| AGGAGCTGAACCAAATCAGT+TGG | 0.589478 | 5_3:+20244254 | Msa0804380:CDS |
| AGAGGTATAATTCAGAAGTA+CGG | 0.590091 | 5_3:+20247397 | Msa0804380:three_prime_UTR |
| TGGCGACGCCAATAGAGTTG+AGG | 0.614691 | 5_3:+20245148 | Msa0804380:CDS |
| CATATTAAGCGTTGTCCATG+CGG | 0.628787 | 5_3:+20245939 | Msa0804380:CDS |
| AGTTCTGAGTGTGAAAGGAG+TGG | 0.632827 | 5_3:-20247134 | None:intergenic |
| TACTGGTCAAGCTTCACACG+AGG | 0.668132 | 5_3:+20245915 | Msa0804380:CDS |
| GTTTGACAAATATAGTAACA+TGG | 0.686824 | 5_3:+20247176 | Msa0804380:exon |
| ATGCAATAGCCATTCCGCAG+AGG | 0.697698 | 5_3:-20245077 | None:intergenic |
| GGTGTCACTGTATTCCTCTG+CGG | 0.703627 | 5_3:+20245063 | Msa0804380:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTCTTTATATGAT+TGG | + | chr5_3:20244450-20244469 | Msa0804380:intron | 10.0% |
| !!! | ATATTGATAGTTTAATTATT+TGG | + | chr5_3:20245797-20245816 | Msa0804380:intron | 10.0% |
| !! | AAAGAAAAAAAAAAACAAAC+TGG | - | chr5_3:20244443-20244462 | None:intergenic | 15.0% |
| !!! | AAATTATTTTGATTGTAACA+TGG | - | chr5_3:20245255-20245274 | None:intergenic | 15.0% |
| !!! | TTTTGAGTTTACATTATATA+TGG | + | chr5_3:20245594-20245613 | Msa0804380:intron | 15.0% |
| !!! | TTTGCTATTAGAATTTTAAT+AGG | - | chr5_3:20246180-20246199 | None:intergenic | 15.0% |
| !! | AAATTCTAATAGCAAATATT+AGG | + | chr5_3:20246184-20246203 | Msa0804380:intron | 15.0% |
| !! | TTAAAATTCAAGTATATTGT+TGG | + | chr5_3:20247420-20247439 | Msa0804380:three_prime_UTR | 15.0% |
| !! | TTAGATATGAAATGTCTTTA+TGG | + | chr5_3:20244149-20244168 | Msa0804380:exon | 20.0% |
| !! | ATTGAATTACAGTTATCTTT+AGG | - | chr5_3:20244213-20244232 | None:intergenic | 20.0% |
| !! | TCATGAAATTAAGCTTAAAA+AGG | - | chr5_3:20244580-20244599 | None:intergenic | 20.0% |
| !!! | TATTCTTAGATTTTCCTAAT+TGG | - | chr5_3:20245431-20245450 | None:intergenic | 20.0% |
| !!! | TTTTTTTTGATAGAGAACTA+TGG | + | chr5_3:20245501-20245520 | Msa0804380:intron | 20.0% |
| !! | AAATCAACAGGAAAATATTA+TGG | - | chr5_3:20245979-20245998 | None:intergenic | 20.0% |
| !!! | AAATCAAATACTTTAGGATA+TGG | - | chr5_3:20246824-20246843 | None:intergenic | 20.0% |
| !!! | GTAATATAAAGGTATTTTTG+TGG | - | chr5_3:20246879-20246898 | None:intergenic | 20.0% |
| !! | ACTATGTAACAATTAAAAAC+AGG | + | chr5_3:20247335-20247354 | Msa0804380:three_prime_UTR | 20.0% |
| !! | CTATGTAACAATTAAAAACA+GGG | + | chr5_3:20247336-20247355 | Msa0804380:three_prime_UTR | 20.0% |
| ! | TGATATCAAGCATAAATAAG+AGG | - | chr5_3:20244100-20244119 | None:intergenic | 25.0% |
| !!! | ATTTTGCTATGTTTTTTCAG+AGG | + | chr5_3:20244234-20244253 | Msa0804380:CDS | 25.0% |
| ! | AATTACAACATACCACATAT+AGG | - | chr5_3:20244318-20244337 | None:intergenic | 25.0% |
| ! | TGGTTAATGATTATGCTAAA+TGG | - | chr5_3:20244423-20244442 | None:intergenic | 25.0% |
| ! | TTCTTTATATGATTGGACAT+TGG | + | chr5_3:20244457-20244476 | Msa0804380:intron | 25.0% |
| ! | TCTTTATATGATTGGACATT+GGG | + | chr5_3:20244458-20244477 | Msa0804380:intron | 25.0% |
| !! | TTTTTGTTCATGCTATAAGT+GGG | - | chr5_3:20244626-20244645 | None:intergenic | 25.0% |
| ! | TATATGGATGTGAAATATGT+CGG | + | chr5_3:20244996-20245015 | Msa0804380:intron | 25.0% |
| ! | TCTGCAATATGTTAAATATG+AGG | + | chr5_3:20245023-20245042 | Msa0804380:intron | 25.0% |
| ! | TTCTAATTTAATTGCATCCA+AGG | + | chr5_3:20245358-20245377 | Msa0804380:intron | 25.0% |
| !! | TTAAAGCATCAGATGTTAAA+GGG | - | chr5_3:20245885-20245904 | None:intergenic | 25.0% |
| !! | TTTAAAGCATCAGATGTTAA+AGG | - | chr5_3:20245886-20245905 | None:intergenic | 25.0% |
| ! | AGGAAAATATTATGGTATAG+TGG | - | chr5_3:20245971-20245990 | None:intergenic | 25.0% |
| !!! | TCCTGTTGATTTATTTTGAA+AGG | + | chr5_3:20245987-20246006 | Msa0804380:intron | 25.0% |
| ! | TCCTTTCAAAATAAATCAAC+AGG | - | chr5_3:20245991-20246010 | None:intergenic | 25.0% |
| !!! | GTTGATTTATTTTGAAAGGA+CGG | + | chr5_3:20245991-20246010 | Msa0804380:intron | 25.0% |
| ! | GCGATTATTTAATGCAAAAA+AGG | - | chr5_3:20246119-20246138 | None:intergenic | 25.0% |
| ! | TAATAGCAAATATTAGGTCT+TGG | + | chr5_3:20246190-20246209 | Msa0804380:intron | 25.0% |
| !!! | AAAATCTAATGGATTAGGAT+CGG | - | chr5_3:20246388-20246407 | None:intergenic | 25.0% |
| !! | ATCCTAATCCATTAGATTTT+AGG | + | chr5_3:20246388-20246407 | Msa0804380:intron | 25.0% |
| ! | AACTATCTTAAATCAGTTGT+CGG | - | chr5_3:20246559-20246578 | None:intergenic | 25.0% |
| ! | GATATGGTTAAAGCATAAAT+AGG | - | chr5_3:20246808-20246827 | None:intergenic | 25.0% |
| !!! | TCCTAAAGTATTTGATTTTC+TGG | + | chr5_3:20246826-20246845 | Msa0804380:intron | 25.0% |
| ! | ACCAGAAAATCAAATACTTT+AGG | - | chr5_3:20246830-20246849 | None:intergenic | 25.0% |
| ! | ATCGTAAGTTCGTAATATAA+AGG | - | chr5_3:20246890-20246909 | None:intergenic | 25.0% |
| !! | ATCAAACTTTTGCAGTTATA+TGG | + | chr5_3:20247002-20247021 | Msa0804380:intron | 25.0% |
| !! | TCAAACTTTTGCAGTTATAT+GGG | + | chr5_3:20247003-20247022 | Msa0804380:intron | 25.0% |
| ! | GTTTGACAAATATAGTAACA+TGG | + | chr5_3:20247176-20247195 | Msa0804380:exon | 25.0% |
| ! | AAGTTGTGACGTTTTTCTTT+TGG | + | chr5_3:20244177-20244196 | Msa0804380:intron | 30.0% |
| ATAAATGACGGTATAGTTCA+AGG | - | chr5_3:20244354-20244373 | None:intergenic | 30.0% | |
| AACTATACCGTCATTTATGT+AGG | + | chr5_3:20244356-20244375 | Msa0804380:intron | 30.0% | |
| TGCAAATACTAAACAAGACA+TGG | - | chr5_3:20244399-20244418 | None:intergenic | 30.0% | |
| TCAAATAAGTCAATCCAAAC+AGG | - | chr5_3:20244484-20244503 | None:intergenic | 30.0% | |
| ! | GTTTTTGTTCATGCTATAAG+TGG | - | chr5_3:20244627-20244646 | None:intergenic | 30.0% |
| GAATCATACAATGTCATAAC+TGG | - | chr5_3:20244749-20244768 | None:intergenic | 30.0% | |
| ! | AAATTTTTCTTAGCTGTGGT+TGG | - | chr5_3:20244778-20244797 | None:intergenic | 30.0% |
| ! | ACAGAAATTTTTCTTAGCTG+TGG | - | chr5_3:20244782-20244801 | None:intergenic | 30.0% |
| AAAAGAGTTGTAACTGTGTA+CGG | + | chr5_3:20244876-20244895 | Msa0804380:intron | 30.0% | |
| TAAGTGAAAGAAAGTAAGTG+CGG | + | chr5_3:20244947-20244966 | Msa0804380:intron | 30.0% | |
| ATTACGATTCACAAAGAGAA+TGG | - | chr5_3:20245216-20245235 | None:intergenic | 30.0% | |
| ! | TCTTTACGATCCATTTTGTT+AGG | + | chr5_3:20245298-20245317 | Msa0804380:intron | 30.0% |
| TAATTTAATTGCATCCAAGG+AGG | + | chr5_3:20245361-20245380 | Msa0804380:intron | 30.0% | |
| CTTCCATTTGTTCTACTTAT+CGG | - | chr5_3:20245403-20245422 | None:intergenic | 30.0% | |
| ! | GATTGTTGTTGTTAAATCCT+AGG | + | chr5_3:20245569-20245588 | Msa0804380:intron | 30.0% |
| AATGTAAACTCAAAACTCCT+AGG | - | chr5_3:20245589-20245608 | None:intergenic | 30.0% | |
| !! | GCTTTAAAGAAAGTTCTTAC+TGG | + | chr5_3:20245898-20245917 | Msa0804380:CDS | 30.0% |
| ! | TATTTTATATCGTAGAGCGT+AGG | + | chr5_3:20246140-20246159 | Msa0804380:intron | 30.0% |
| TGATCTCAGATTAATGGTTT+GGG | - | chr5_3:20246261-20246280 | None:intergenic | 30.0% | |
| !! | AAATCTAATGGATTAGGATC+GGG | - | chr5_3:20246387-20246406 | None:intergenic | 30.0% |
| GAATTAGGCCTAAAATCTAA+TGG | - | chr5_3:20246399-20246418 | None:intergenic | 30.0% | |
| ! | AATAGGCATTGTTTATGACT+TGG | + | chr5_3:20246464-20246483 | Msa0804380:intron | 30.0% |
| AGATAGTTTATGACTCCATT+TGG | + | chr5_3:20246571-20246590 | Msa0804380:intron | 30.0% | |
| ! | TATGACTCCATTTGGATTTT+AGG | + | chr5_3:20246579-20246598 | Msa0804380:intron | 30.0% |
| ATTAGATATAGCACCTAACA+GGG | - | chr5_3:20246678-20246697 | None:intergenic | 30.0% | |
| GTGCTATATCTAATCTATGT+AGG | + | chr5_3:20246684-20246703 | Msa0804380:intron | 30.0% | |
| CTAATGGTAAACCATCATAT+AGG | + | chr5_3:20246720-20246739 | Msa0804380:intron | 30.0% | |
| TTCATTAAGTGGCAAAATCT+CGG | - | chr5_3:20246747-20246766 | None:intergenic | 30.0% | |
| AAGCATAAATAGGACAATCA+GGG | - | chr5_3:20246798-20246817 | None:intergenic | 30.0% | |
| AAAGCATAAATAGGACAATC+AGG | - | chr5_3:20246799-20246818 | None:intergenic | 30.0% | |
| TGAACTAGAATTCTGAACAA+TGG | - | chr5_3:20247080-20247099 | None:intergenic | 30.0% | |
| ! | AAGACTTGTTCCTGTTTATA+AGG | + | chr5_3:20247258-20247277 | Msa0804380:three_prime_UTR | 30.0% |
| AAGAATCTCACCTTATAAAC+AGG | - | chr5_3:20247271-20247290 | None:intergenic | 30.0% | |
| ACAGCATACTTTACAACATA+CGG | - | chr5_3:20247297-20247316 | None:intergenic | 30.0% | |
| TTCAAACTCTTCTGATAAAC+AGG | + | chr5_3:20247363-20247382 | Msa0804380:three_prime_UTR | 30.0% | |
| ! | AGAGGTATAATTCAGAAGTA+CGG | + | chr5_3:20247397-20247416 | Msa0804380:three_prime_UTR | 30.0% |
| TCAAGTATATTGTTGGCATA+TGG | + | chr5_3:20247427-20247446 | Msa0804380:three_prime_UTR | 30.0% | |
| !! | TTGGGAGTATTTCCTATATG+TGG | + | chr5_3:20244303-20244322 | Msa0804380:CDS | 35.0% |
| !! | ATAGTTCAAGGTGGGTTAAT+TGG | - | chr5_3:20244342-20244361 | None:intergenic | 35.0% |
| CTGCATTCCTACATAAATGA+CGG | - | chr5_3:20244366-20244385 | None:intergenic | 35.0% | |
| ACTAAACAAGACATGGTTGT+GGG | - | chr5_3:20244392-20244411 | None:intergenic | 35.0% | |
| TACTAAACAAGACATGGTTG+TGG | - | chr5_3:20244393-20244412 | None:intergenic | 35.0% | |
| TTAAGCTGTTTGTCCAAACA+GGG | + | chr5_3:20244723-20244742 | Msa0804380:intron | 35.0% | |
| CACATCCATATATGCTTTCT+CGG | - | chr5_3:20244988-20245007 | None:intergenic | 35.0% | |
| ! | GAGGCTAATGTTTTGCAAAT+AGG | + | chr5_3:20245042-20245061 | Msa0804380:intron | 35.0% |
| TATGATGCTCACGAACTTTA+TGG | + | chr5_3:20245128-20245147 | Msa0804380:CDS | 35.0% | |
| GCATATTACCTCAACTCTAT+TGG | - | chr5_3:20245159-20245178 | None:intergenic | 35.0% | |
| ! | TTACGATCCATTTTGTTAGG+AGG | + | chr5_3:20245301-20245320 | Msa0804380:intron | 35.0% |
| ! | ATCCATTTTGTTAGGAGGAT+GGG | + | chr5_3:20245306-20245325 | Msa0804380:intron | 35.0% |
| AAATGGAAGACAGTCCAATT+AGG | + | chr5_3:20245414-20245433 | Msa0804380:intron | 35.0% | |
| ACAATCAAACCATCTTCACT+AGG | - | chr5_3:20245555-20245574 | None:intergenic | 35.0% | |
| GACACAGAGATGTAAAATTG+TGG | - | chr5_3:20245641-20245660 | None:intergenic | 35.0% | |
| AAACATTGCCATGAGAACAA+GGG | - | chr5_3:20245717-20245736 | None:intergenic | 35.0% | |
| TCAGATGTTAAAGGGAAATG+AGG | - | chr5_3:20245877-20245896 | None:intergenic | 35.0% | |
| ! | ACCAAATGCGCATTTTACAT+AGG | + | chr5_3:20246066-20246085 | Msa0804380:intron | 35.0% |
| ACCTATGTAAAATGCGCATT+TGG | - | chr5_3:20246070-20246089 | None:intergenic | 35.0% | |
| CTGATCTCAGATTAATGGTT+TGG | - | chr5_3:20246262-20246281 | None:intergenic | 35.0% | |
| ! | ACCATTAATCTGAGATCAGA+CGG | + | chr5_3:20246263-20246282 | Msa0804380:intron | 35.0% |
| !! | GGCCTAAAATCTAATGGATT+AGG | - | chr5_3:20246393-20246412 | None:intergenic | 35.0% |
| ! | ACCTTACACATCGGTTAAAT+GGG | - | chr5_3:20246425-20246444 | None:intergenic | 35.0% |
| ACAATGCCTATTACAAAGCT+TGG | - | chr5_3:20246456-20246475 | None:intergenic | 35.0% | |
| ! | CTGCACAAAACTAACTTGTA+CGG | + | chr5_3:20246619-20246638 | Msa0804380:intron | 35.0% |
| ! | AGCTTTATAAACTCCCTGTT+AGG | + | chr5_3:20246662-20246681 | Msa0804380:intron | 35.0% |
| GATTAGATATAGCACCTAAC+AGG | - | chr5_3:20246679-20246698 | None:intergenic | 35.0% | |
| ! | AGGACTTGAGTCTTTTCTAA+TGG | + | chr5_3:20246704-20246723 | Msa0804380:intron | 35.0% |
| AAAATCTCGGTCCTATATGA+TGG | - | chr5_3:20246734-20246753 | None:intergenic | 35.0% | |
| ! | AACTTTTGCAGTTATATGGG+TGG | + | chr5_3:20247006-20247025 | Msa0804380:intron | 35.0% |
| TATAGTGCTCCAAGAATGAA+AGG | - | chr5_3:20247044-20247063 | None:intergenic | 35.0% | |
| !! | TTTTGGACTTAAAGGTACAC+TGG | - | chr5_3:20247111-20247130 | None:intergenic | 35.0% |
| !!! | AGTGGCTTTTTTGGACTTAA+AGG | - | chr5_3:20247119-20247138 | None:intergenic | 35.0% |
| GTTATGCACATGTTCTTTAG+TGG | + | chr5_3:20247211-20247230 | Msa0804380:three_prime_UTR | 35.0% | |
| AAACAGGTTCATAGAGATAG+AGG | + | chr5_3:20247379-20247398 | Msa0804380:three_prime_UTR | 35.0% | |
| ATGACGGTATAGTTCAAGGT+GGG | - | chr5_3:20244350-20244369 | None:intergenic | 40.0% | |
| AATGACGGTATAGTTCAAGG+TGG | - | chr5_3:20244351-20244370 | None:intergenic | 40.0% | |
| CTAAACAAGACATGGTTGTG+GGG | - | chr5_3:20244391-20244410 | None:intergenic | 40.0% | |
| GTGGGTTTCATAAGCTATCT+TGG | - | chr5_3:20244608-20244627 | None:intergenic | 40.0% | |
| GTTAAGCTGTTTGTCCAAAC+AGG | + | chr5_3:20244722-20244741 | Msa0804380:intron | 40.0% | |
| ! | AGGATCCGAGAAAGCATATA+TGG | + | chr5_3:20244980-20244999 | Msa0804380:intron | 40.0% |
| AAGTTCGTGAGCATCATAGT+TGG | - | chr5_3:20245126-20245145 | None:intergenic | 40.0% | |
| ! | GATCCATTTTGTTAGGAGGA+TGG | + | chr5_3:20245305-20245324 | Msa0804380:intron | 40.0% |
| AACCCATCCTCCTAACAAAA+TGG | - | chr5_3:20245311-20245330 | None:intergenic | 40.0% | |
| CCATTTGTTCTACTTATCGG+CGG | - | chr5_3:20245400-20245419 | None:intergenic | 40.0% | |
| GTGGCATATCAATGAGTCAA+TGG | - | chr5_3:20245672-20245691 | None:intergenic | 40.0% | |
| CAAACATTGCCATGAGAACA+AGG | - | chr5_3:20245718-20245737 | None:intergenic | 40.0% | |
| ATTGTTCCGTTTCTACGCTT+CGG | + | chr5_3:20245832-20245851 | Msa0804380:CDS | 40.0% | |
| AATTCACCGAAGCGTAGAAA+CGG | - | chr5_3:20245841-20245860 | None:intergenic | 40.0% | |
| TTCGGTGAATTTATGTCTGG+CGG | + | chr5_3:20245850-20245869 | Msa0804380:CDS | 40.0% | |
| ! | CATATTAAGCGTTGTCCATG+CGG | + | chr5_3:20245939-20245958 | Msa0804380:CDS | 40.0% |
| TTTATATCGTAGAGCGTAGG+TGG | + | chr5_3:20246143-20246162 | Msa0804380:intron | 40.0% | |
| ACCGTCTGATCTCAGATTAA+TGG | - | chr5_3:20246267-20246286 | None:intergenic | 40.0% | |
| AATTGAGATCGAAAACTGCG+TGG | + | chr5_3:20246348-20246367 | Msa0804380:intron | 40.0% | |
| CGGTTAAATGGGGTTGAATT+AGG | - | chr5_3:20246414-20246433 | None:intergenic | 40.0% | |
| ! | CCTTACACATCGGTTAAATG+GGG | - | chr5_3:20246424-20246443 | None:intergenic | 40.0% |
| ! | CACCTTACACATCGGTTAAA+TGG | - | chr5_3:20246426-20246445 | None:intergenic | 40.0% |
| CATTTAACCGATGTGTAAGG+TGG | + | chr5_3:20246424-20246443 | Msa0804380:intron | 40.0% | |
| ! | TGAGTGCCAAGCTTTGTAAT+AGG | + | chr5_3:20246447-20246466 | Msa0804380:intron | 40.0% |
| TAGGCATGAGAGGATATACT+AGG | - | chr5_3:20246496-20246515 | None:intergenic | 40.0% | |
| ATGCCTAACACTATTGGACA+TGG | + | chr5_3:20246509-20246528 | Msa0804380:intron | 40.0% | |
| ACACCATGTCCAATAGTGTT+AGG | - | chr5_3:20246515-20246534 | None:intergenic | 40.0% | |
| GACATGGTGTGTGGATAATA+TGG | + | chr5_3:20246525-20246544 | Msa0804380:intron | 40.0% | |
| ATGGTGTGTGGATAATATGG+TGG | + | chr5_3:20246528-20246547 | Msa0804380:intron | 40.0% | |
| CGTTAGGCCTAAAATCCAAA+TGG | - | chr5_3:20246589-20246608 | None:intergenic | 40.0% | |
| ! | CAAAACTAACTTGTACGGTG+AGG | + | chr5_3:20246624-20246643 | Msa0804380:intron | 40.0% |
| ACAGGGAGTTTATAAAGCTC+TGG | - | chr5_3:20246661-20246680 | None:intergenic | 40.0% | |
| GATTGCGTGCATTCATTAAG+TGG | - | chr5_3:20246758-20246777 | None:intergenic | 40.0% | |
| ! | CAATTTGCCTTTTGCAATGC+AGG | + | chr5_3:20246910-20246929 | Msa0804380:intron | 40.0% |
| CACAAATCCTGCATTGCAAA+AGG | - | chr5_3:20246920-20246939 | None:intergenic | 40.0% | |
| !!! | TGTGAAAGGAGTGGCTTTTT+TGG | - | chr5_3:20247128-20247147 | None:intergenic | 40.0% |
| TCCTTTCACACTCAGAACTA+AGG | + | chr5_3:20247138-20247157 | Msa0804380:CDS | 40.0% | |
| !! | ACCTTAGTTCTGAGTGTGAA+AGG | - | chr5_3:20247142-20247161 | None:intergenic | 40.0% |
| ACACTCAGAACTAAGGTTGA+AGG | + | chr5_3:20247145-20247164 | Msa0804380:CDS | 40.0% | |
| AGGAGCTGAACCAAATCAGT+TGG | + | chr5_3:20244254-20244273 | Msa0804380:CDS | 45.0% | |
| GCAGAGAAAGCCAACTGATT+TGG | - | chr5_3:20244267-20244286 | None:intergenic | 45.0% | |
| TGCTGCTCTTGGCATTACAT+TGG | + | chr5_3:20244284-20244303 | Msa0804380:CDS | 45.0% | |
| GCTGCTCTTGGCATTACATT+GGG | + | chr5_3:20244285-20244304 | Msa0804380:CDS | 45.0% | |
| ATGTCATAACTGGCCCTGTT+TGG | - | chr5_3:20244739-20244758 | None:intergenic | 45.0% | |
| GGAATGGCTATTGCATTGCT+TGG | + | chr5_3:20245084-20245103 | Msa0804380:CDS | 45.0% | |
| ! | GATGGGTTCTTAGTTTCTCG+TGG | + | chr5_3:20245323-20245342 | Msa0804380:intron | 45.0% |
| CATCCAAGGAGGATGAATAG+AGG | + | chr5_3:20245372-20245391 | Msa0804380:intron | 45.0% | |
| CCGCCGATAAGTAGAACAAA+TGG | + | chr5_3:20245397-20245416 | Msa0804380:intron | 45.0% | |
| TCATTCCTGCCTAGTGAAGA+TGG | + | chr5_3:20245543-20245562 | Msa0804380:intron | 45.0% | |
| TCAAACCATCTTCACTAGGC+AGG | - | chr5_3:20245551-20245570 | None:intergenic | 45.0% | |
| CTCATTGATATGCCACGTCT+TGG | + | chr5_3:20245676-20245695 | Msa0804380:intron | 45.0% | |
| ATGCCACGTCTTGGACATAT+AGG | + | chr5_3:20245685-20245704 | Msa0804380:intron | 45.0% | |
| GAACCTATATGTCCAAGACG+TGG | - | chr5_3:20245691-20245710 | None:intergenic | 45.0% | |
| GGTTCTTTCCCTTGTTCTCA+TGG | + | chr5_3:20245706-20245725 | Msa0804380:intron | 45.0% | |
| CGCTTCGGTGAATTTATGTC+TGG | + | chr5_3:20245847-20245866 | Msa0804380:CDS | 45.0% | |
| TCGGTGAATTTATGTCTGGC+GGG | + | chr5_3:20245851-20245870 | Msa0804380:CDS | 45.0% | |
| ATCGTTTGATGCAAACTGCG+TGG | - | chr5_3:20246238-20246257 | None:intergenic | 45.0% | |
| CCCCATTTAACCGATGTGTA+AGG | + | chr5_3:20246421-20246440 | Msa0804380:intron | 45.0% | |
| CCAATAGTGTTAGGCATGAG+AGG | - | chr5_3:20246506-20246525 | None:intergenic | 45.0% | |
| CCTCTCATGCCTAACACTAT+TGG | + | chr5_3:20246503-20246522 | Msa0804380:intron | 45.0% | |
| ACACTATTGGACATGGTGTG+TGG | + | chr5_3:20246516-20246535 | Msa0804380:intron | 45.0% | |
| GTGCAGTTATCTGTTGCGTT+AGG | - | chr5_3:20246605-20246624 | None:intergenic | 45.0% | |
| GCTGCATCACCTTTCATTCT+TGG | + | chr5_3:20247032-20247051 | Msa0804380:CDS | 45.0% | |
| !! | AGTTCTGAGTGTGAAAGGAG+TGG | - | chr5_3:20247137-20247156 | None:intergenic | 45.0% |
| ! | TTGGCTTTCTCTGCTGCTCT+TGG | + | chr5_3:20244273-20244292 | Msa0804380:CDS | 50.0% |
| GATTGGACATTGGGCCTGTT+TGG | + | chr5_3:20244467-20244486 | Msa0804380:intron | 50.0% | |
| TTTCTCGGATCCTCTACAGC+AGG | - | chr5_3:20244973-20244992 | None:intergenic | 50.0% | |
| !! | GGTGTCACTGTATTCCTCTG+CGG | + | chr5_3:20245063-20245082 | Msa0804380:intron | 50.0% |
| CACTGTATTCCTCTGCGGAA+TGG | + | chr5_3:20245068-20245087 | Msa0804380:CDS | 50.0% | |
| ATGCAATAGCCATTCCGCAG+AGG | - | chr5_3:20245080-20245099 | None:intergenic | 50.0% | |
| GAGCCTCTATTCATCCTCCT+TGG | - | chr5_3:20245378-20245397 | None:intergenic | 50.0% | |
| TACTGGTCAAGCTTCACACG+AGG | + | chr5_3:20245915-20245934 | Msa0804380:CDS | 50.0% | |
| ! | TTAAGCGTTGTCCATGCGGT+AGG | + | chr5_3:20245943-20245962 | Msa0804380:intron | 50.0% |
| GTAGAGCGTAGGTGGTTGTT+TGG | + | chr5_3:20246151-20246170 | Msa0804380:intron | 50.0% | |
| GGAATTGCTGCAGGCAATCT+GGG | - | chr5_3:20246217-20246236 | None:intergenic | 50.0% | |
| TGGAATTGCTGCAGGCAATC+TGG | - | chr5_3:20246218-20246237 | None:intergenic | 50.0% | |
| AAACTGCGTGGAATTGCTGC+AGG | - | chr5_3:20246226-20246245 | None:intergenic | 50.0% | |
| GCACTCACCACCTTACACAT+CGG | - | chr5_3:20246434-20246453 | None:intergenic | 50.0% | |
| AACTTGTACGGTGAGGACTG+AGG | + | chr5_3:20246631-20246650 | Msa0804380:intron | 50.0% | |
| ! | GCACGCAATCTGTTTTCCTG+TGG | + | chr5_3:20246768-20246787 | Msa0804380:intron | 50.0% |
| GGACAATCAGGGAATACCAC+AGG | - | chr5_3:20246787-20246806 | None:intergenic | 50.0% | |
| GATCCTCTACAGCAGCTGCA+TGG | + | chr5_3:20244898-20244917 | Msa0804380:intron | 55.0% | |
| TGGCGACGCCAATAGAGTTG+AGG | + | chr5_3:20245148-20245167 | Msa0804380:CDS | 55.0% | |
| GTATAGTGGCACCTACCGCA+TGG | - | chr5_3:20245957-20245976 | None:intergenic | 55.0% | |
| GCACCATGCAGCTGCTGTAG+AGG | - | chr5_3:20244904-20244923 | None:intergenic | 60.0% | |
| GCAGCACACTGCACAGCTGT+TGG | + | chr5_3:20244922-20244941 | Msa0804380:intron | 60.0% | |
| GTAAGTGCGGCCTGCTGTAG+AGG | + | chr5_3:20244960-20244979 | Msa0804380:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 20244096 | 20247533 | 20244096 | ID=Msa0804380;Name=Msa0804380 |
| chr5_3 | mRNA | 20244096 | 20247533 | 20244096 | ID=Msa0804380-mRNA-1;Parent=Msa0804380;Name=Msa0804380-mRNA-1;_AED=0.07;_eAED=0.07;_QI=64|1|1|1|0.75|0.6|5|352|182 |
| chr5_3 | exon | 20244096 | 20244181 | 20244096 | ID=Msa0804380-mRNA-1:exon:8225;Parent=Msa0804380-mRNA-1 |
| chr5_3 | exon | 20244202 | 20244324 | 20244202 | ID=Msa0804380-mRNA-1:exon:8226;Parent=Msa0804380-mRNA-1 |
| chr5_3 | exon | 20245064 | 20245169 | 20245064 | ID=Msa0804380-mRNA-1:exon:8227;Parent=Msa0804380-mRNA-1 |
| chr5_3 | exon | 20245828 | 20245960 | 20245828 | ID=Msa0804380-mRNA-1:exon:8228;Parent=Msa0804380-mRNA-1 |
| chr5_3 | exon | 20247017 | 20247533 | 20247017 | ID=Msa0804380-mRNA-1:exon:8229;Parent=Msa0804380-mRNA-1 |
| chr5_3 | five_prime_UTR | 20244096 | 20244159 | 20244096 | ID=Msa0804380-mRNA-1:five_prime_utr;Parent=Msa0804380-mRNA-1 |
| chr5_3 | CDS | 20244160 | 20244181 | 20244160 | ID=Msa0804380-mRNA-1:cds;Parent=Msa0804380-mRNA-1 |
| chr5_3 | CDS | 20244202 | 20244324 | 20244202 | ID=Msa0804380-mRNA-1:cds;Parent=Msa0804380-mRNA-1 |
| chr5_3 | CDS | 20245064 | 20245169 | 20245064 | ID=Msa0804380-mRNA-1:cds;Parent=Msa0804380-mRNA-1 |
| chr5_3 | CDS | 20245828 | 20245960 | 20245828 | ID=Msa0804380-mRNA-1:cds;Parent=Msa0804380-mRNA-1 |
| chr5_3 | CDS | 20247017 | 20247181 | 20247017 | ID=Msa0804380-mRNA-1:cds;Parent=Msa0804380-mRNA-1 |
| chr5_3 | three_prime_UTR | 20247182 | 20247533 | 20247182 | ID=Msa0804380-mRNA-1:three_prime_utr;Parent=Msa0804380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
