Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0488170 | XP_003598092.2 | 99.454 | 183 | 1 | 0 | 1 | 183 | 1 | 183 | 1.72e-128 | 368 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0488170 | G7J0A0 | 99.454 | 183 | 1 | 0 | 1 | 183 | 1 | 183 | 8.22e-129 | 368 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0170230 | Msa0488170 | 0.802191 | 6.307231e-49 | -8.615850e-47 |
| Msa0488170 | Msa0804380 | 0.865639 | 5.105095e-65 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0488170 | MtrunA17_Chr3g0077951 | 100.000 | 156 | 0 | 0 | 28 | 183 | 24 | 179 | 8.26e-110 | 311 |
| Msa0488170 | MtrunA17_Chr4g0013571 | 65.169 | 178 | 62 | 0 | 6 | 183 | 1 | 178 | 3.67e-82 | 241 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0488170 | AT1G33490.1 | 71.598 | 169 | 48 | 0 | 1 | 169 | 1 | 169 | 7.40e-85 | 248 |
| Msa0488170 | AT4G10140.1 | 64.286 | 182 | 65 | 0 | 1 | 182 | 1 | 182 | 3.08e-80 | 236 |
| Msa0488170 | AT1G33490.3 | 73.846 | 130 | 34 | 0 | 1 | 130 | 1 | 130 | 5.83e-66 | 199 |
| Msa0488170 | AT1G33490.2 | 72.441 | 127 | 35 | 0 | 43 | 169 | 1 | 127 | 1.01e-62 | 190 |
Find 54 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGCATCACCTTTCATTCT+TGG | 0.150625 | 3_4:-7434914 | Msa0488170:CDS |
| TATGATGCTCACGAACTTTA+TGG | 0.165738 | 3_4:-7436819 | Msa0488170:CDS |
| TTATCAAAGTTTGAAAATTT+AGG | 0.241743 | 3_4:+7438748 | None:intergenic |
| AAGACTTGTTCCTGTTTATA+AGG | 0.263804 | 3_4:-7434688 | Msa0488170:three_prime_UTR |
| TTTAAAGCATCAGATGTTAA+AGG | 0.291346 | 3_4:+7436063 | None:intergenic |
| GCAGAGAAAGCCAACTGATT+TGG | 0.316448 | 3_4:+7437682 | None:intergenic |
| TTCAAACTCTTCTGATAAAC+AGG | 0.321433 | 3_4:-7434583 | Msa0488170:three_prime_UTR |
| TTGGCTTTCTCTGCTGCTCT+TGG | 0.354022 | 3_4:-7437673 | Msa0488170:CDS |
| TTAAAGCATCAGATGTTAAA+GGG | 0.367451 | 3_4:+7436064 | None:intergenic |
| GCTTTAAAGAAAGTTCTTAC+TGG | 0.374819 | 3_4:-7436048 | Msa0488170:CDS |
| GCATATTACCTCAACTCTAT+TGG | 0.377682 | 3_4:+7436791 | None:intergenic |
| GTTATGCACATGTTCTTTAG+TGG | 0.383367 | 3_4:-7434735 | Msa0488170:three_prime_UTR |
| TTAAAATTCAAGTATATTGT+TGG | 0.396178 | 3_4:-7434526 | Msa0488170:three_prime_UTR |
| TCAAGTATATTGTTGGCATA+TGG | 0.403219 | 3_4:-7434519 | Msa0488170:three_prime_UTR |
| AAGAATCTCACCTTATAAAC+AGG | 0.404591 | 3_4:+7434678 | None:intergenic |
| GCTGCTCTTGGCATTACATT+GGG | 0.408552 | 3_4:-7437661 | Msa0488170:CDS |
| CGCTTCGGTGAATTTATGTC+TGG | 0.418134 | 3_4:-7436099 | Msa0488170:CDS |
| TGCTGCTCTTGGCATTACAT+TGG | 0.419462 | 3_4:-7437662 | Msa0488170:CDS |
| ATTTAGCTTGAAAATTGAAA+AGG | 0.430969 | 3_4:+7438714 | None:intergenic |
| ATTGTTCCGTTTCTACGCTT+CGG | 0.434543 | 3_4:-7436114 | Msa0488170:CDS |
| CTCTTGTTTCCATTCTTCAC+AGG | 0.437303 | 3_4:-7438617 | Msa0488170:intron |
| ACAGCATACTTTACAACATA+AGG | 0.448054 | 3_4:+7434652 | None:intergenic |
| TTTAGCTTGAAAATTGAAAA+GGG | 0.452221 | 3_4:+7438715 | None:intergenic |
| GGAAGATGGCAATTACCAAT+TGG | 0.461009 | 3_4:-7438662 | Msa0488170:CDS |
| AATTACAACATACCACATAT+AGG | 0.470933 | 3_4:+7437631 | None:intergenic |
| TCCTTTCACACTCAGAACTA+AGG | 0.471434 | 3_4:-7434808 | Msa0488170:CDS |
| TTCGAAACTTAGAACGAAGA+TGG | 0.471913 | 3_4:-7438691 | Msa0488170:exon |
| ACACTCAGAACTAAGGTTGA+AGG | 0.480792 | 3_4:-7434801 | Msa0488170:CDS |
| TTGGGAGTATTTCCTATATG+TGG | 0.488852 | 3_4:-7437643 | Msa0488170:intron |
| TTCGGTGAATTTATGTCTGG+CGG | 0.488963 | 3_4:-7436096 | Msa0488170:CDS |
| AATTCACCGAAGCGTAGAAA+CGG | 0.492649 | 3_4:+7436108 | None:intergenic |
| AAACAGGTTCATAGAGATAG+AGG | 0.509858 | 3_4:-7434567 | Msa0488170:three_prime_UTR |
| ACCTTAGTTCTGAGTGTGAA+AGG | 0.513975 | 3_4:+7434807 | None:intergenic |
| GGAATGGCTATTGCATTGCT+TGG | 0.517080 | 3_4:-7436863 | Msa0488170:CDS |
| CACTGTATTCCTCTGCGGAA+TGG | 0.522128 | 3_4:-7436879 | Msa0488170:CDS |
| TGAAGAGTACCTGTGAAGAA+TGG | 0.527204 | 3_4:+7438608 | None:intergenic |
| TCGGTGAATTTATGTCTGGC+GGG | 0.529549 | 3_4:-7436095 | Msa0488170:CDS |
| TTAGAACGAAGATGGCGAAT+GGG | 0.539474 | 3_4:-7438683 | Msa0488170:exon |
| GAAGATGGCGAATGGGAAGA+TGG | 0.540022 | 3_4:-7438676 | Msa0488170:exon |
| AAGTTCGTGAGCATCATAGT+TGG | 0.557950 | 3_4:+7436824 | None:intergenic |
| CTTAGAACGAAGATGGCGAA+TGG | 0.565283 | 3_4:-7438684 | Msa0488170:exon |
| TGAACTAGAATTCTGAACAA+TGG | 0.566355 | 3_4:+7434869 | None:intergenic |
| TATAGTGCTCCAAGAATGAA+AGG | 0.570927 | 3_4:+7434905 | None:intergenic |
| TCAGATGTTAAAGGGAAATG+AGG | 0.588588 | 3_4:+7436072 | None:intergenic |
| AGGAGCTGAACCAAATCAGT+TGG | 0.589478 | 3_4:-7437692 | Msa0488170:CDS |
| AGAGGTATAATTCAGAAGTA+CGG | 0.590091 | 3_4:-7434549 | Msa0488170:three_prime_UTR |
| TGGCGACGCCAATAGAGTTG+AGG | 0.614691 | 3_4:-7436799 | Msa0488170:intron |
| CTGTGAAGAATGGAAACAAG+AGG | 0.624294 | 3_4:+7438618 | None:intergenic |
| CATATTAAGCGTTGTCCATG+CGG | 0.628787 | 3_4:-7436007 | Msa0488170:intron |
| AGTTCTGAGTGTGAAAGGAG+TGG | 0.632827 | 3_4:+7434812 | None:intergenic |
| TACTGGTCAAGCTTCACACG+AGG | 0.668132 | 3_4:-7436031 | Msa0488170:CDS |
| GTTTGACAAATATAGTAACA+TGG | 0.686824 | 3_4:-7434770 | Msa0488170:exon |
| ATGCAATAGCCATTCCGCAG+AGG | 0.697698 | 3_4:+7436870 | None:intergenic |
| GGTGTCACTGTATTCCTCTG+CGG | 0.703627 | 3_4:-7436884 | Msa0488170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTCTTTATATGAT+TGG | - | chr3_4:7435740-7435759 | Msa0488170:intron | 10.0% |
| !!! | ATATTGATAGTTTAATTATT+TGG | - | chr3_4:7437088-7437107 | Msa0488170:intron | 10.0% |
| !! | TTATCAAAGTTTGAAAATTT+AGG | + | chr3_4:7434492-7434511 | None:intergenic | 15.0% |
| !!! | AATTTTATTTCTGTAATGAT+TGG | - | chr3_4:7434720-7434739 | Msa0488170:three_prime_UTR | 15.0% |
| !! | TAAAGAAAAAAAAAACAAAC+TGG | + | chr3_4:7435734-7435753 | None:intergenic | 15.0% |
| !!! | AAATTATTTTGATTGTAACA+TGG | + | chr3_4:7436545-7436564 | None:intergenic | 15.0% |
| !!! | TTTTGAGTTTACATTATATA+TGG | - | chr3_4:7436885-7436904 | Msa0488170:CDS | 15.0% |
| !!! | TTTGCTATTAGAATTTTAAT+AGG | + | chr3_4:7437471-7437490 | None:intergenic | 15.0% |
| !! | AAATTCTAATAGCAAATATT+AGG | - | chr3_4:7437475-7437494 | Msa0488170:intron | 15.0% |
| !! | TTAAAATTCAAGTATATTGT+TGG | - | chr3_4:7438711-7438730 | Msa0488170:five_prime_UTR | 15.0% |
| !!! | TTTAGCTTGAAAATTGAAAA+GGG | + | chr3_4:7434525-7434544 | None:intergenic | 20.0% |
| !!! | ATTTAGCTTGAAAATTGAAA+AGG | + | chr3_4:7434526-7434545 | None:intergenic | 20.0% |
| !! | TTATAACAACAAACAAATAG+TGG | + | chr3_4:7434681-7434700 | None:intergenic | 20.0% |
| !!! | ATAATCAAAGTCAGTTTTAA+AGG | + | chr3_4:7434807-7434826 | None:intergenic | 20.0% |
| !!! | TTCTTTGAAAAAAGTGATTT+TGG | - | chr3_4:7434881-7434900 | Msa0488170:CDS | 20.0% |
| !!! | TGATTTTGATATGTTTTGTT+CGG | - | chr3_4:7435024-7435043 | Msa0488170:intron | 20.0% |
| !! | ATATATATCCAGGAAATTAT+GGG | + | chr3_4:7435341-7435360 | None:intergenic | 20.0% |
| !!! | TTATTTTAGCATATATATCC+AGG | + | chr3_4:7435351-7435370 | None:intergenic | 20.0% |
| !! | TTAGATATGAAATGTCTTTA+TGG | - | chr3_4:7435440-7435459 | Msa0488170:intron | 20.0% |
| !! | ATTGAATTACAGTTATCTTT+AGG | + | chr3_4:7435504-7435523 | None:intergenic | 20.0% |
| !! | TCATGAAATTAAGCTTAAAA+AGG | + | chr3_4:7435870-7435889 | None:intergenic | 20.0% |
| !!! | TTTTCTTAGATTTTCCTAAT+TGG | + | chr3_4:7436721-7436740 | None:intergenic | 20.0% |
| !!! | TTTTTTTTGATAGAGAACTA+TGG | - | chr3_4:7436792-7436811 | Msa0488170:intron | 20.0% |
| !! | AAATCAACAGGAAAATATTA+TGG | + | chr3_4:7437270-7437289 | None:intergenic | 20.0% |
| !!! | AAATCAAATACTTTAGGATA+TGG | + | chr3_4:7438115-7438134 | None:intergenic | 20.0% |
| !!! | GTAATATAAAGGTATTTTTG+TGG | + | chr3_4:7438170-7438189 | None:intergenic | 20.0% |
| !! | ACTATGTAACAATTAAAAAC+AGG | - | chr3_4:7438626-7438645 | Msa0488170:CDS | 20.0% |
| !! | CTATGTAACAATTAAAAACA+GGG | - | chr3_4:7438627-7438646 | Msa0488170:CDS | 20.0% |
| !! | TAAAACTGACTTTGATTATG+AGG | - | chr3_4:7434808-7434827 | Msa0488170:CDS | 25.0% |
| !!! | AAGTGATTTTGGTATCAAAA+AGG | - | chr3_4:7434892-7434911 | Msa0488170:CDS | 25.0% |
| !!! | AGTGATTTTGGTATCAAAAA+GGG | - | chr3_4:7434893-7434912 | Msa0488170:CDS | 25.0% |
| !! | TGTTTGTAAAAGTGTATGTT+TGG | - | chr3_4:7434957-7434976 | Msa0488170:intron | 25.0% |
| !!! | ATTTTGGTTAATCCAAAAGT+GGG | + | chr3_4:7434984-7435003 | None:intergenic | 25.0% |
| !!! | AATTTTGGTTAATCCAAAAG+TGG | + | chr3_4:7434985-7435004 | None:intergenic | 25.0% |
| ! | AAGCTAAAGTGATTTATGTT+TGG | + | chr3_4:7435180-7435199 | None:intergenic | 25.0% |
| ! | CATATATATCCAGGAAATTA+TGG | + | chr3_4:7435342-7435361 | None:intergenic | 25.0% |
| ! | TGATATCAAGCATAAATAAG+AGG | + | chr3_4:7435391-7435410 | None:intergenic | 25.0% |
| !!! | ATTTTGCTATGTTTTTTCAG+AGG | - | chr3_4:7435525-7435544 | Msa0488170:intron | 25.0% |
| ! | AATTACAACATACCACATAT+AGG | + | chr3_4:7435609-7435628 | None:intergenic | 25.0% |
| ! | TGGTTAATGATTATGCTAAA+TGG | + | chr3_4:7435714-7435733 | None:intergenic | 25.0% |
| ! | TTCTTTATATGATTGGACAT+TGG | - | chr3_4:7435747-7435766 | Msa0488170:intron | 25.0% |
| ! | TCTTTATATGATTGGACATT+GGG | - | chr3_4:7435748-7435767 | Msa0488170:intron | 25.0% |
| !! | TTTTTGTTCATGCTATAAGT+GGG | + | chr3_4:7435916-7435935 | None:intergenic | 25.0% |
| ! | TATATGGATGTGAAATATGT+CGG | - | chr3_4:7436286-7436305 | Msa0488170:intron | 25.0% |
| ! | TCTGCAATATGTTAAATATG+AGG | - | chr3_4:7436313-7436332 | Msa0488170:intron | 25.0% |
| ! | TTCTAATTTAATTGCATCCA+AGG | - | chr3_4:7436648-7436667 | Msa0488170:intron | 25.0% |
| !! | TTAAAGCATCAGATGTTAAA+GGG | + | chr3_4:7437176-7437195 | None:intergenic | 25.0% |
| !! | TTTAAAGCATCAGATGTTAA+AGG | + | chr3_4:7437177-7437196 | None:intergenic | 25.0% |
| ! | AGGAAAATATTATGGTATAG+TGG | + | chr3_4:7437262-7437281 | None:intergenic | 25.0% |
| !!! | TCCTGTTGATTTATTTTGAA+AGG | - | chr3_4:7437278-7437297 | Msa0488170:intron | 25.0% |
| ! | TCCTTTCAAAATAAATCAAC+AGG | + | chr3_4:7437282-7437301 | None:intergenic | 25.0% |
| !!! | GTTGATTTATTTTGAAAGGA+CGG | - | chr3_4:7437282-7437301 | Msa0488170:intron | 25.0% |
| ! | GCGATTATTTAATGCAAAAA+AGG | + | chr3_4:7437410-7437429 | None:intergenic | 25.0% |
| ! | TAATAGCAAATATTAGGTCT+TGG | - | chr3_4:7437481-7437500 | Msa0488170:intron | 25.0% |
| !!! | AAAATCTAATGGATTAGGAT+CGG | + | chr3_4:7437679-7437698 | None:intergenic | 25.0% |
| !! | ATCCTAATCCATTAGATTTT+AGG | - | chr3_4:7437679-7437698 | Msa0488170:CDS | 25.0% |
| ! | AACTATCTTAAATCAGTTGT+CGG | + | chr3_4:7437850-7437869 | None:intergenic | 25.0% |
| ! | GATATGGTTAAAGCATAAAT+AGG | + | chr3_4:7438099-7438118 | None:intergenic | 25.0% |
| !!! | TCCTAAAGTATTTGATTTTC+TGG | - | chr3_4:7438117-7438136 | Msa0488170:intron | 25.0% |
| ! | ACCAGAAAATCAAATACTTT+AGG | + | chr3_4:7438121-7438140 | None:intergenic | 25.0% |
| ! | ATCGTAAGTTCGTAATATAA+AGG | + | chr3_4:7438181-7438200 | None:intergenic | 25.0% |
| !! | ATCAAACTTTTGCAGTTATA+TGG | - | chr3_4:7438293-7438312 | Msa0488170:intron | 25.0% |
| !! | TCAAACTTTTGCAGTTATAT+GGG | - | chr3_4:7438294-7438313 | Msa0488170:intron | 25.0% |
| ! | GTTTGACAAATATAGTAACA+TGG | - | chr3_4:7438467-7438486 | Msa0488170:intron | 25.0% |
| GGTTATATGTGATCTGTTTA+TGG | - | chr3_4:7434741-7434760 | Msa0488170:three_prime_UTR | 30.0% | |
| TGACTTTGATTATGAGGTAT+AGG | - | chr3_4:7434814-7434833 | Msa0488170:CDS | 30.0% | |
| GACTTTGATTATGAGGTATA+GGG | - | chr3_4:7434815-7434834 | Msa0488170:CDS | 30.0% | |
| ACTTTGATTATGAGGTATAG+GGG | - | chr3_4:7434816-7434835 | Msa0488170:CDS | 30.0% | |
| ! | GGATTAACCAAAATTGATTC+TGG | - | chr3_4:7434990-7435009 | Msa0488170:intron | 30.0% |
| ! | TTAACCAAAATTGATTCTGG+AGG | - | chr3_4:7434993-7435012 | Msa0488170:intron | 30.0% |
| AGTGATTTATGTTTGGACTT+TGG | + | chr3_4:7435173-7435192 | None:intergenic | 30.0% | |
| !! | TCACTTTTAGAAGTTCTAAC+AGG | + | chr3_4:7435266-7435285 | None:intergenic | 30.0% |
| ! | AAGTTGTGACGTTTTTCTTT+TGG | - | chr3_4:7435468-7435487 | Msa0488170:intron | 30.0% |
| ATAAATGACGGTATAGTTCA+AGG | + | chr3_4:7435645-7435664 | None:intergenic | 30.0% | |
| AACTATACCGTCATTTATGT+AGG | - | chr3_4:7435647-7435666 | Msa0488170:intron | 30.0% | |
| TGCAAATACTAAACAAGACA+TGG | + | chr3_4:7435690-7435709 | None:intergenic | 30.0% | |
| TCAAATAAGTCAATCCAAAC+AGG | + | chr3_4:7435774-7435793 | None:intergenic | 30.0% | |
| ! | GTTTTTGTTCATGCTATAAG+TGG | + | chr3_4:7435917-7435936 | None:intergenic | 30.0% |
| GAATCATACAATGTCATAAC+TGG | + | chr3_4:7436039-7436058 | None:intergenic | 30.0% | |
| ! | AAATTTTTCTTAGCTGTGGT+TGG | + | chr3_4:7436068-7436087 | None:intergenic | 30.0% |
| ! | ACAGAAATTTTTCTTAGCTG+TGG | + | chr3_4:7436072-7436091 | None:intergenic | 30.0% |
| AAAAGAGTTGTAACTGTGTA+CGG | - | chr3_4:7436166-7436185 | Msa0488170:intron | 30.0% | |
| TAAGTGAAAGAAAGTAAGTG+CGG | - | chr3_4:7436237-7436256 | Msa0488170:intron | 30.0% | |
| ATTACGATTCACAAAGAGAA+TGG | + | chr3_4:7436506-7436525 | None:intergenic | 30.0% | |
| ! | TCTTTACGATCCATTTTGTT+AGG | - | chr3_4:7436588-7436607 | Msa0488170:intron | 30.0% |
| TAATTTAATTGCATCCAAGG+AGG | - | chr3_4:7436651-7436670 | Msa0488170:intron | 30.0% | |
| CTTCCATTTGTTCTACTTAT+CGG | + | chr3_4:7436693-7436712 | None:intergenic | 30.0% | |
| ! | GATTGTTGTTGTTAAATCCT+AGG | - | chr3_4:7436860-7436879 | Msa0488170:CDS | 30.0% |
| AATGTAAACTCAAAACTCCT+AGG | + | chr3_4:7436880-7436899 | None:intergenic | 30.0% | |
| !! | GCTTTAAAGAAAGTTCTTAC+TGG | - | chr3_4:7437189-7437208 | Msa0488170:intron | 30.0% |
| ! | TATTTTATATCGTAGAGCGT+AGG | - | chr3_4:7437431-7437450 | Msa0488170:intron | 30.0% |
| TGATCTCAGATTAATGGTTT+GGG | + | chr3_4:7437552-7437571 | None:intergenic | 30.0% | |
| !! | AAATCTAATGGATTAGGATC+GGG | + | chr3_4:7437678-7437697 | None:intergenic | 30.0% |
| GAATTAGGCCTAAAATCTAA+TGG | + | chr3_4:7437690-7437709 | None:intergenic | 30.0% | |
| ! | AATAGGCATTGTTTATGACT+TGG | - | chr3_4:7437755-7437774 | Msa0488170:intron | 30.0% |
| AGATAGTTTATGACTCCATT+TGG | - | chr3_4:7437862-7437881 | Msa0488170:intron | 30.0% | |
| ! | TATGACTCCATTTGGATTTT+AGG | - | chr3_4:7437870-7437889 | Msa0488170:intron | 30.0% |
| ATTAGATATAGCACCTAACA+GGG | + | chr3_4:7437969-7437988 | None:intergenic | 30.0% | |
| GTGCTATATCTAATCTATGT+AGG | - | chr3_4:7437975-7437994 | Msa0488170:intron | 30.0% | |
| CTAATGGTAAACCATCATAT+AGG | - | chr3_4:7438011-7438030 | Msa0488170:intron | 30.0% | |
| TTCATTAAGTGGCAAAATCT+CGG | + | chr3_4:7438038-7438057 | None:intergenic | 30.0% | |
| AAGCATAAATAGGACAATCA+GGG | + | chr3_4:7438089-7438108 | None:intergenic | 30.0% | |
| AAAGCATAAATAGGACAATC+AGG | + | chr3_4:7438090-7438109 | None:intergenic | 30.0% | |
| TGAACTAGAATTCTGAACAA+TGG | + | chr3_4:7438371-7438390 | None:intergenic | 30.0% | |
| ! | AAGACTTGTTCCTGTTTATA+AGG | - | chr3_4:7438549-7438568 | Msa0488170:intron | 30.0% |
| AAGAATCTCACCTTATAAAC+AGG | + | chr3_4:7438562-7438581 | None:intergenic | 30.0% | |
| ACAGCATACTTTACAACATA+AGG | + | chr3_4:7438588-7438607 | None:intergenic | 30.0% | |
| TTCAAACTCTTCTGATAAAC+AGG | - | chr3_4:7438654-7438673 | Msa0488170:CDS | 30.0% | |
| ! | AGAGGTATAATTCAGAAGTA+CGG | - | chr3_4:7438688-7438707 | Msa0488170:exon | 30.0% |
| TCAAGTATATTGTTGGCATA+TGG | - | chr3_4:7438718-7438737 | Msa0488170:five_prime_UTR | 30.0% | |
| TTCGAAACTTAGAACGAAGA+TGG | - | chr3_4:7434546-7434565 | Msa0488170:three_prime_UTR | 35.0% | |
| !!! | GATTTTCTTCTGGAACCAAT+TGG | + | chr3_4:7434593-7434612 | None:intergenic | 35.0% |
| ! | TGGATTCTATCACTTGTTGA+AGG | - | chr3_4:7434761-7434780 | Msa0488170:three_prime_UTR | 35.0% |
| !! | TTGGGAGTATTTCCTATATG+TGG | - | chr3_4:7435594-7435613 | Msa0488170:intron | 35.0% |
| !! | ATAGTTCAAGGTGGGTTAAT+TGG | + | chr3_4:7435633-7435652 | None:intergenic | 35.0% |
| CTGCATTCCTACATAAATGA+CGG | + | chr3_4:7435657-7435676 | None:intergenic | 35.0% | |
| ACTAAACAAGACATGGTTGT+GGG | + | chr3_4:7435683-7435702 | None:intergenic | 35.0% | |
| TACTAAACAAGACATGGTTG+TGG | + | chr3_4:7435684-7435703 | None:intergenic | 35.0% | |
| TTAAGCTGTTTGTCCAAACA+GGG | - | chr3_4:7436013-7436032 | Msa0488170:CDS | 35.0% | |
| CACATCCATATATGCTTTCT+CGG | + | chr3_4:7436278-7436297 | None:intergenic | 35.0% | |
| ! | GAGGCTAATGTTTTGCAAAT+AGG | - | chr3_4:7436332-7436351 | Msa0488170:intron | 35.0% |
| TATGATGCTCACGAACTTTA+TGG | - | chr3_4:7436418-7436437 | Msa0488170:intron | 35.0% | |
| GCATATTACCTCAACTCTAT+TGG | + | chr3_4:7436449-7436468 | None:intergenic | 35.0% | |
| ! | TTACGATCCATTTTGTTAGG+AGG | - | chr3_4:7436591-7436610 | Msa0488170:intron | 35.0% |
| ! | ATCCATTTTGTTAGGAGGAT+GGG | - | chr3_4:7436596-7436615 | Msa0488170:intron | 35.0% |
| AAATGGAAGACAGTCCAATT+AGG | - | chr3_4:7436704-7436723 | Msa0488170:intron | 35.0% | |
| ACAATCAAACCATCTTCACT+AGG | + | chr3_4:7436846-7436865 | None:intergenic | 35.0% | |
| GACACAGAGATGTAAAATTG+TGG | + | chr3_4:7436932-7436951 | None:intergenic | 35.0% | |
| AAACATTGCCATGAGAACAA+GGG | + | chr3_4:7437008-7437027 | None:intergenic | 35.0% | |
| TCAGATGTTAAAGGGAAATG+AGG | + | chr3_4:7437168-7437187 | None:intergenic | 35.0% | |
| ! | ACCAAATGCGCATTTTACAT+AGG | - | chr3_4:7437357-7437376 | Msa0488170:intron | 35.0% |
| ACCTATGTAAAATGCGCATT+TGG | + | chr3_4:7437361-7437380 | None:intergenic | 35.0% | |
| CTGATCTCAGATTAATGGTT+TGG | + | chr3_4:7437553-7437572 | None:intergenic | 35.0% | |
| ! | ACCATTAATCTGAGATCAGA+CGG | - | chr3_4:7437554-7437573 | Msa0488170:intron | 35.0% |
| !! | GGCCTAAAATCTAATGGATT+AGG | + | chr3_4:7437684-7437703 | None:intergenic | 35.0% |
| ! | ACCTTACACATCGGTTAAAT+GGG | + | chr3_4:7437716-7437735 | None:intergenic | 35.0% |
| ACAATGCCTATTACAAAGCT+TGG | + | chr3_4:7437747-7437766 | None:intergenic | 35.0% | |
| ! | CTGCACAAAACTAACTTGTA+CGG | - | chr3_4:7437910-7437929 | Msa0488170:intron | 35.0% |
| ! | AGCTTTATAAACTCCCTGTT+AGG | - | chr3_4:7437953-7437972 | Msa0488170:intron | 35.0% |
| GATTAGATATAGCACCTAAC+AGG | + | chr3_4:7437970-7437989 | None:intergenic | 35.0% | |
| ! | AGGACTTGAGTCTTTTCTAA+TGG | - | chr3_4:7437995-7438014 | Msa0488170:intron | 35.0% |
| AAAATCTCGGTCCTATATGA+TGG | + | chr3_4:7438025-7438044 | None:intergenic | 35.0% | |
| ! | AACTTTTGCAGTTATATGGG+TGG | - | chr3_4:7438297-7438316 | Msa0488170:intron | 35.0% |
| TATAGTGCTCCAAGAATGAA+AGG | + | chr3_4:7438335-7438354 | None:intergenic | 35.0% | |
| !! | TTTTGGACTTAAAGGTACAC+TGG | + | chr3_4:7438402-7438421 | None:intergenic | 35.0% |
| !!! | AGTGGCTTTTTTGGACTTAA+AGG | + | chr3_4:7438410-7438429 | None:intergenic | 35.0% |
| GTTATGCACATGTTCTTTAG+TGG | - | chr3_4:7438502-7438521 | Msa0488170:intron | 35.0% | |
| AAACAGGTTCATAGAGATAG+AGG | - | chr3_4:7438670-7438689 | Msa0488170:CDS | 35.0% | |
| TTAGAACGAAGATGGCGAAT+GGG | - | chr3_4:7434554-7434573 | Msa0488170:three_prime_UTR | 40.0% | |
| GGAAGATGGCAATTACCAAT+TGG | - | chr3_4:7434575-7434594 | Msa0488170:three_prime_UTR | 40.0% | |
| !!! | GAGGATCACTGATTTTCTTC+TGG | + | chr3_4:7434603-7434622 | None:intergenic | 40.0% |
| CTGTGAAGAATGGAAACAAG+AGG | + | chr3_4:7434622-7434641 | None:intergenic | 40.0% | |
| ! | CTCTTGTTTCCATTCTTCAC+AGG | - | chr3_4:7434620-7434639 | Msa0488170:three_prime_UTR | 40.0% |
| !! | TGAAGAGTACCTGTGAAGAA+TGG | + | chr3_4:7434632-7434651 | None:intergenic | 40.0% |
| ! | TGTATGTTTGGTCCCACTTT+TGG | - | chr3_4:7434969-7434988 | Msa0488170:intron | 40.0% |
| ! | TGCACCTCCAGAATCAATTT+TGG | + | chr3_4:7435000-7435019 | None:intergenic | 40.0% |
| TTGTTCGGCTAGAGAAGAAT+TGG | - | chr3_4:7435039-7435058 | Msa0488170:intron | 40.0% | |
| CAATTGTGCCCATAATTTCC+TGG | - | chr3_4:7435330-7435349 | Msa0488170:intron | 40.0% | |
| ATGACGGTATAGTTCAAGGT+GGG | + | chr3_4:7435641-7435660 | None:intergenic | 40.0% | |
| AATGACGGTATAGTTCAAGG+TGG | + | chr3_4:7435642-7435661 | None:intergenic | 40.0% | |
| CTAAACAAGACATGGTTGTG+GGG | + | chr3_4:7435682-7435701 | None:intergenic | 40.0% | |
| GTGGGTTTCATAAGCTATCT+TGG | + | chr3_4:7435898-7435917 | None:intergenic | 40.0% | |
| GTTAAGCTGTTTGTCCAAAC+AGG | - | chr3_4:7436012-7436031 | Msa0488170:CDS | 40.0% | |
| ! | AGGATCCGAGAAAGCATATA+TGG | - | chr3_4:7436270-7436289 | Msa0488170:intron | 40.0% |
| AAGTTCGTGAGCATCATAGT+TGG | + | chr3_4:7436416-7436435 | None:intergenic | 40.0% | |
| ! | GATCCATTTTGTTAGGAGGA+TGG | - | chr3_4:7436595-7436614 | Msa0488170:intron | 40.0% |
| AACCCATCCTCCTAACAAAA+TGG | + | chr3_4:7436601-7436620 | None:intergenic | 40.0% | |
| CCATTTGTTCTACTTATCGG+CGG | + | chr3_4:7436690-7436709 | None:intergenic | 40.0% | |
| GTGGCATATCAATGAGTCAA+TGG | + | chr3_4:7436963-7436982 | None:intergenic | 40.0% | |
| CAAACATTGCCATGAGAACA+AGG | + | chr3_4:7437009-7437028 | None:intergenic | 40.0% | |
| ATTGTTCCGTTTCTACGCTT+CGG | - | chr3_4:7437123-7437142 | Msa0488170:intron | 40.0% | |
| AATTCACCGAAGCGTAGAAA+CGG | + | chr3_4:7437132-7437151 | None:intergenic | 40.0% | |
| TTCGGTGAATTTATGTCTGG+CGG | - | chr3_4:7437141-7437160 | Msa0488170:intron | 40.0% | |
| ! | CATATTAAGCGTTGTCCATG+CGG | - | chr3_4:7437230-7437249 | Msa0488170:intron | 40.0% |
| TTTATATCGTAGAGCGTAGG+TGG | - | chr3_4:7437434-7437453 | Msa0488170:intron | 40.0% | |
| ACCGTCTGATCTCAGATTAA+TGG | + | chr3_4:7437558-7437577 | None:intergenic | 40.0% | |
| AATTGAGATCGAAAACTGCG+TGG | - | chr3_4:7437639-7437658 | Msa0488170:intron | 40.0% | |
| CGGTTAAATGGGGTTGAATT+AGG | + | chr3_4:7437705-7437724 | None:intergenic | 40.0% | |
| ! | CCTTACACATCGGTTAAATG+GGG | + | chr3_4:7437715-7437734 | None:intergenic | 40.0% |
| ! | CACCTTACACATCGGTTAAA+TGG | + | chr3_4:7437717-7437736 | None:intergenic | 40.0% |
| CATTTAACCGATGTGTAAGG+TGG | - | chr3_4:7437715-7437734 | Msa0488170:intron | 40.0% | |
| ! | TGAGTGCCAAGCTTTGTAAT+AGG | - | chr3_4:7437738-7437757 | Msa0488170:intron | 40.0% |
| TAGGCATGAGAGGATATACT+AGG | + | chr3_4:7437787-7437806 | None:intergenic | 40.0% | |
| ATGCCTAACACTATTGGACA+TGG | - | chr3_4:7437800-7437819 | Msa0488170:intron | 40.0% | |
| ACACCATGTCCAATAGTGTT+AGG | + | chr3_4:7437806-7437825 | None:intergenic | 40.0% | |
| GACATGGTGTGTGGATAATA+TGG | - | chr3_4:7437816-7437835 | Msa0488170:intron | 40.0% | |
| ATGGTGTGTGGATAATATGG+TGG | - | chr3_4:7437819-7437838 | Msa0488170:intron | 40.0% | |
| CGTTAGGCCTAAAATCCAAA+TGG | + | chr3_4:7437880-7437899 | None:intergenic | 40.0% | |
| ! | CAAAACTAACTTGTACGGTG+AGG | - | chr3_4:7437915-7437934 | Msa0488170:intron | 40.0% |
| ACAGGGAGTTTATAAAGCTC+TGG | + | chr3_4:7437952-7437971 | None:intergenic | 40.0% | |
| GATTGCGTGCATTCATTAAG+TGG | + | chr3_4:7438049-7438068 | None:intergenic | 40.0% | |
| ! | CAATTTGCCTTTTGCAATGC+AGG | - | chr3_4:7438201-7438220 | Msa0488170:intron | 40.0% |
| CACAAATCCTGCATTGCAAA+AGG | + | chr3_4:7438211-7438230 | None:intergenic | 40.0% | |
| !!! | TGTGAAAGGAGTGGCTTTTT+TGG | + | chr3_4:7438419-7438438 | None:intergenic | 40.0% |
| TCCTTTCACACTCAGAACTA+AGG | - | chr3_4:7438429-7438448 | Msa0488170:intron | 40.0% | |
| !! | ACCTTAGTTCTGAGTGTGAA+AGG | + | chr3_4:7438433-7438452 | None:intergenic | 40.0% |
| ACACTCAGAACTAAGGTTGA+AGG | - | chr3_4:7438436-7438455 | Msa0488170:intron | 40.0% | |
| CTTAGAACGAAGATGGCGAA+TGG | - | chr3_4:7434553-7434572 | Msa0488170:three_prime_UTR | 45.0% | |
| AGGAGCTGAACCAAATCAGT+TGG | - | chr3_4:7435545-7435564 | Msa0488170:intron | 45.0% | |
| GCAGAGAAAGCCAACTGATT+TGG | + | chr3_4:7435558-7435577 | None:intergenic | 45.0% | |
| TGCTGCTCTTGGCATTACAT+TGG | - | chr3_4:7435575-7435594 | Msa0488170:intron | 45.0% | |
| GCTGCTCTTGGCATTACATT+GGG | - | chr3_4:7435576-7435595 | Msa0488170:intron | 45.0% | |
| ATGTCATAACTGGCCCTGTT+TGG | + | chr3_4:7436029-7436048 | None:intergenic | 45.0% | |
| GGAATGGCTATTGCATTGCT+TGG | - | chr3_4:7436374-7436393 | Msa0488170:intron | 45.0% | |
| ! | GATGGGTTCTTAGTTTCTCG+TGG | - | chr3_4:7436613-7436632 | Msa0488170:intron | 45.0% |
| CATCCAAGGAGGATGAATAG+AGG | - | chr3_4:7436662-7436681 | Msa0488170:intron | 45.0% | |
| CCGCCGATAAGTAGAACAAA+TGG | - | chr3_4:7436687-7436706 | Msa0488170:intron | 45.0% | |
| TCATTCCTGCCTAGTGAAGA+TGG | - | chr3_4:7436834-7436853 | Msa0488170:CDS | 45.0% | |
| TCAAACCATCTTCACTAGGC+AGG | + | chr3_4:7436842-7436861 | None:intergenic | 45.0% | |
| CTCATTGATATGCCACGTCT+TGG | - | chr3_4:7436967-7436986 | Msa0488170:intron | 45.0% | |
| ATGCCACGTCTTGGACATAT+AGG | - | chr3_4:7436976-7436995 | Msa0488170:intron | 45.0% | |
| GAACCTATATGTCCAAGACG+TGG | + | chr3_4:7436982-7437001 | None:intergenic | 45.0% | |
| GGTTCTTTCCCTTGTTCTCA+TGG | - | chr3_4:7436997-7437016 | Msa0488170:intron | 45.0% | |
| CGCTTCGGTGAATTTATGTC+TGG | - | chr3_4:7437138-7437157 | Msa0488170:intron | 45.0% | |
| TCGGTGAATTTATGTCTGGC+GGG | - | chr3_4:7437142-7437161 | Msa0488170:intron | 45.0% | |
| ATCGTTTGATGCAAACTGCG+TGG | + | chr3_4:7437529-7437548 | None:intergenic | 45.0% | |
| CCCCATTTAACCGATGTGTA+AGG | - | chr3_4:7437712-7437731 | Msa0488170:intron | 45.0% | |
| CCAATAGTGTTAGGCATGAG+AGG | + | chr3_4:7437797-7437816 | None:intergenic | 45.0% | |
| CCTCTCATGCCTAACACTAT+TGG | - | chr3_4:7437794-7437813 | Msa0488170:intron | 45.0% | |
| ACACTATTGGACATGGTGTG+TGG | - | chr3_4:7437807-7437826 | Msa0488170:intron | 45.0% | |
| GTGCAGTTATCTGTTGCGTT+AGG | + | chr3_4:7437896-7437915 | None:intergenic | 45.0% | |
| GCTGCATCACCTTTCATTCT+TGG | - | chr3_4:7438323-7438342 | Msa0488170:intron | 45.0% | |
| !! | AGTTCTGAGTGTGAAAGGAG+TGG | + | chr3_4:7438428-7438447 | None:intergenic | 45.0% |
| GAAGATGGCGAATGGGAAGA+TGG | - | chr3_4:7434561-7434580 | Msa0488170:three_prime_UTR | 50.0% | |
| ! | TTGGCTTTCTCTGCTGCTCT+TGG | - | chr3_4:7435564-7435583 | Msa0488170:intron | 50.0% |
| GATTGGACATTGGGCCTGTT+TGG | - | chr3_4:7435757-7435776 | Msa0488170:intron | 50.0% | |
| TTTCTCGGATCCTCTACAGC+AGG | + | chr3_4:7436263-7436282 | None:intergenic | 50.0% | |
| !! | GGTGTCACTGTATTCCTCTG+CGG | - | chr3_4:7436353-7436372 | Msa0488170:intron | 50.0% |
| CACTGTATTCCTCTGCGGAA+TGG | - | chr3_4:7436358-7436377 | Msa0488170:intron | 50.0% | |
| ATGCAATAGCCATTCCGCAG+AGG | + | chr3_4:7436370-7436389 | None:intergenic | 50.0% | |
| GAGCCTCTATTCATCCTCCT+TGG | + | chr3_4:7436668-7436687 | None:intergenic | 50.0% | |
| TACTGGTCAAGCTTCACACG+AGG | - | chr3_4:7437206-7437225 | Msa0488170:intron | 50.0% | |
| ! | TTAAGCGTTGTCCATGCGGT+AGG | - | chr3_4:7437234-7437253 | Msa0488170:intron | 50.0% |
| GTAGAGCGTAGGTGGTTGTT+TGG | - | chr3_4:7437442-7437461 | Msa0488170:intron | 50.0% | |
| GGAATTGCTGCAGGCAATCT+GGG | + | chr3_4:7437508-7437527 | None:intergenic | 50.0% | |
| TGGAATTGCTGCAGGCAATC+TGG | + | chr3_4:7437509-7437528 | None:intergenic | 50.0% | |
| AAACTGCGTGGAATTGCTGC+AGG | + | chr3_4:7437517-7437536 | None:intergenic | 50.0% | |
| GCACTCACCACCTTACACAT+CGG | + | chr3_4:7437725-7437744 | None:intergenic | 50.0% | |
| AACTTGTACGGTGAGGACTG+AGG | - | chr3_4:7437922-7437941 | Msa0488170:intron | 50.0% | |
| ! | GCACGCAATCTGTTTTCCTG+TGG | - | chr3_4:7438059-7438078 | Msa0488170:intron | 50.0% |
| GGACAATCAGGGAATACCAC+AGG | + | chr3_4:7438078-7438097 | None:intergenic | 50.0% | |
| GATCCTCTACAGCAGCTGCA+TGG | - | chr3_4:7436188-7436207 | Msa0488170:intron | 55.0% | |
| TGGCGACGCCAATAGAGTTG+AGG | - | chr3_4:7436438-7436457 | Msa0488170:intron | 55.0% | |
| GTATAGTGGCACCTACCGCA+TGG | + | chr3_4:7437248-7437267 | None:intergenic | 55.0% | |
| GCACCATGCAGCTGCTGTAG+AGG | + | chr3_4:7436194-7436213 | None:intergenic | 60.0% | |
| GCAGCACACTGCACAGCTGT+TGG | - | chr3_4:7436212-7436231 | Msa0488170:intron | 60.0% | |
| GTAAGTGCGGCCTGCTGTAG+AGG | - | chr3_4:7436250-7436269 | Msa0488170:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 7434435 | 7438824 | 7434435 | ID=Msa0488170;Name=Msa0488170 |
| chr3_4 | mRNA | 7434435 | 7438824 | 7434435 | ID=Msa0488170-mRNA-1;Parent=Msa0488170;Name=Msa0488170-mRNA-1;_AED=0.08;_eAED=0.08;_QI=130|1|1|1|1|1|5|352|183 |
| chr3_4 | exon | 7434435 | 7434951 | 7434435 | ID=Msa0488170-mRNA-1:exon:2603;Parent=Msa0488170-mRNA-1 |
| chr3_4 | exon | 7436008 | 7436140 | 7436008 | ID=Msa0488170-mRNA-1:exon:2602;Parent=Msa0488170-mRNA-1 |
| chr3_4 | exon | 7436800 | 7436905 | 7436800 | ID=Msa0488170-mRNA-1:exon:2601;Parent=Msa0488170-mRNA-1 |
| chr3_4 | exon | 7437644 | 7437714 | 7437644 | ID=Msa0488170-mRNA-1:exon:2600;Parent=Msa0488170-mRNA-1 |
| chr3_4 | exon | 7438618 | 7438824 | 7438618 | ID=Msa0488170-mRNA-1:exon:2599;Parent=Msa0488170-mRNA-1 |
| chr3_4 | five_prime_UTR | 7438695 | 7438824 | 7438695 | ID=Msa0488170-mRNA-1:five_prime_utr;Parent=Msa0488170-mRNA-1 |
| chr3_4 | CDS | 7438618 | 7438694 | 7438618 | ID=Msa0488170-mRNA-1:cds;Parent=Msa0488170-mRNA-1 |
| chr3_4 | CDS | 7437644 | 7437714 | 7437644 | ID=Msa0488170-mRNA-1:cds;Parent=Msa0488170-mRNA-1 |
| chr3_4 | CDS | 7436800 | 7436905 | 7436800 | ID=Msa0488170-mRNA-1:cds;Parent=Msa0488170-mRNA-1 |
| chr3_4 | CDS | 7436008 | 7436140 | 7436008 | ID=Msa0488170-mRNA-1:cds;Parent=Msa0488170-mRNA-1 |
| chr3_4 | CDS | 7434787 | 7434951 | 7434787 | ID=Msa0488170-mRNA-1:cds;Parent=Msa0488170-mRNA-1 |
| chr3_4 | three_prime_UTR | 7434435 | 7434786 | 7434435 | ID=Msa0488170-mRNA-1:three_prime_utr;Parent=Msa0488170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
