Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0804740 | XP_003613091.1 | 96.610 | 177 | 6 | 0 | 1 | 177 | 1 | 177 | 3.81e-121 | 349 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0804740 | G7JXR4 | 96.610 | 177 | 6 | 0 | 1 | 177 | 1 | 177 | 1.82e-121 | 349 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0663090 | Msa0804740 | 0.803537 | 3.324437e-49 | -8.615850e-47 |
Msa0413930 | Msa0804740 | 0.803539 | 3.321348e-49 | -8.615850e-47 |
Msa0458950 | Msa0804740 | 0.815152 | 1.070331e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0804740 | MtrunA17_Chr5g0412491 | 97.006 | 167 | 5 | 0 | 11 | 177 | 1 | 167 | 6.88e-116 | 325 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0804740 | AT1G26290.1 | 42.735 | 117 | 58 | 3 | 1 | 116 | 1 | 109 | 8.14e-17 | 73.6 |
Find 39 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATTAAATATATAATTATATT+TGG | 0.157980 | 5_3:+20723675 | None:intergenic |
TCTTACTATGCCTATTATAT+TGG | 0.159642 | 5_3:-20722948 | Msa0804740:three_prime_UTR |
CTTACTATGCCTATTATATT+GGG | 0.208100 | 5_3:-20722947 | Msa0804740:three_prime_UTR |
AGATTTAGAAGAGGAGATTA+AGG | 0.230236 | 5_3:-20723416 | Msa0804740:CDS |
TAACAAAGAAGCAAATAAAA+AGG | 0.238986 | 5_3:-20723224 | Msa0804740:CDS |
TCAAGCCCTATTCCTGTAAA+AGG | 0.284131 | 5_3:-20723115 | Msa0804740:CDS |
AAAATTTACCCCAATATAAT+AGG | 0.309509 | 5_3:+20722938 | None:intergenic |
CACTTTCTGAGGTGATTATA+AGG | 0.320343 | 5_3:-20723288 | Msa0804740:CDS |
TTCAACTCCTCTGCTGAAAT+AGG | 0.331112 | 5_3:+20723472 | None:intergenic |
AAGAAGTGAAGAAGATTGAT+TGG | 0.347744 | 5_3:-20723159 | Msa0804740:CDS |
GGATAAGAAGCTACTTCAAT+TGG | 0.436350 | 5_3:-20723032 | Msa0804740:CDS |
TTGATTGGGAGAAGAGTTTG+AGG | 0.445900 | 5_3:-20723144 | Msa0804740:CDS |
AACGTTATTCATATCCGATC+AGG | 0.465153 | 5_3:+20722915 | None:intergenic |
AGGAACTAAAATTGAAATCA+AGG | 0.471855 | 5_3:-20723251 | Msa0804740:CDS |
TTAGAAGAGGAGATTAAGGA+AGG | 0.483543 | 5_3:-20723412 | Msa0804740:CDS |
GGTGATTATAAGGATGAGAA+TGG | 0.489148 | 5_3:-20723278 | Msa0804740:CDS |
AAAGGAGAGAGATGCAAAAG+AGG | 0.490952 | 5_3:-20723344 | Msa0804740:CDS |
TGATTGGGAGAAGAGTTTGA+GGG | 0.505362 | 5_3:-20723143 | Msa0804740:CDS |
AAAGGATAAGATAATGATGA+GGG | 0.511757 | 5_3:-20723071 | Msa0804740:CDS |
GCTACTTCAATTGGTGTGGA+AGG | 0.513216 | 5_3:-20723023 | Msa0804740:CDS |
ATTATAAGGATGAGAATGGA+AGG | 0.528677 | 5_3:-20723274 | Msa0804740:CDS |
AGAAGTGAAGAAGATTGATT+GGG | 0.529976 | 5_3:-20723158 | Msa0804740:CDS |
AATAATAACATGGATCATCA+TGG | 0.531079 | 5_3:-20723651 | Msa0804740:exon |
ATATGTTAGATCAAAGCAAA+AGG | 0.536682 | 5_3:-20723089 | Msa0804740:CDS |
TTACTATGCCTATTATATTG+GGG | 0.540322 | 5_3:-20722946 | Msa0804740:three_prime_UTR |
TTGGTGTGGAAGGTTTAAAG+TGG | 0.548941 | 5_3:-20723013 | Msa0804740:exon |
ATATAATAGGCATAGTAAGA+AGG | 0.558419 | 5_3:+20722951 | None:intergenic |
CAAAATTAGAGCACTTTCTG+AGG | 0.566466 | 5_3:-20723299 | Msa0804740:CDS |
GATTGAAAGAGATTTAGAAG+AGG | 0.567737 | 5_3:-20723425 | Msa0804740:CDS |
GAGGGGAAAGAATGCAAGTG+AGG | 0.574468 | 5_3:-20723053 | Msa0804740:CDS |
TGAGGTTCCTATTTCAGCAG+AGG | 0.574672 | 5_3:-20723479 | Msa0804740:CDS |
AGAAGCTACTTCAATTGGTG+TGG | 0.577937 | 5_3:-20723027 | Msa0804740:CDS |
ATATTTAATTAATAATAACA+TGG | 0.583953 | 5_3:-20723661 | Msa0804740:exon |
AAAAGGATAAGATAATGATG+AGG | 0.592572 | 5_3:-20723072 | Msa0804740:CDS |
TGGGAGAAGAGTTTGAGGGC+AGG | 0.600710 | 5_3:-20723139 | Msa0804740:CDS |
ATAAGGATGAGAATGGAAGG+AGG | 0.636221 | 5_3:-20723271 | Msa0804740:CDS |
CATCATGGAATGTACACCAA+AGG | 0.652781 | 5_3:-20723636 | Msa0804740:intron |
AAGGATAAGATAATGATGAG+GGG | 0.685809 | 5_3:-20723070 | Msa0804740:CDS |
AACTAAAATTGAAATCAAGG+AGG | 0.721284 | 5_3:-20723248 | Msa0804740:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTTCTTGCTTTTTTTAAT+TGG | - | chr5_3:20723589-20723608 | Msa0804740:intron | 15.0% |
!!! | ATTTTCTTGCTTTTTTTAAT+TGG | - | chr5_3:20723589-20723608 | Msa0804740:intron | 15.0% |
!! | TAACAAAGAAGCAAATAAAA+AGG | - | chr5_3:20723351-20723370 | Msa0804740:CDS | 20.0% |
!! | AACAAAGAAGCAAATAAAAA+GGG | - | chr5_3:20723352-20723371 | Msa0804740:CDS | 20.0% |
!!! | ACTTCTTTCAAACATTTTTT+GGG | + | chr5_3:20723403-20723422 | None:intergenic | 20.0% |
!! | AAAATTTACCCCAATATAAT+AGG | + | chr5_3:20723640-20723659 | None:intergenic | 20.0% |
!! | TAACAAAGAAGCAAATAAAA+AGG | - | chr5_3:20723351-20723370 | Msa0804740:CDS | 20.0% |
!! | AACAAAGAAGCAAATAAAAA+GGG | - | chr5_3:20723352-20723371 | Msa0804740:CDS | 20.0% |
!!! | ACTTCTTTCAAACATTTTTT+GGG | + | chr5_3:20723403-20723422 | None:intergenic | 20.0% |
!! | AAAATTTACCCCAATATAAT+AGG | + | chr5_3:20723640-20723659 | None:intergenic | 20.0% |
! | AATAATAACATGGATCATCA+TGG | - | chr5_3:20722924-20722943 | Msa0804740:three_prime_UTR | 25.0% |
! | ATCAACAAAACTATGAAGAA+TGG | + | chr5_3:20723013-20723032 | None:intergenic | 25.0% |
! | GTCAAATAAAAATGTTCTTG+AGG | - | chr5_3:20723078-20723097 | Msa0804740:CDS | 25.0% |
! | AGGAACTAAAATTGAAATCA+AGG | - | chr5_3:20723324-20723343 | Msa0804740:CDS | 25.0% |
! | AACTAAAATTGAAATCAAGG+AGG | - | chr5_3:20723327-20723346 | Msa0804740:CDS | 25.0% |
!!! | CATTTTTTGGGTCTAAAATT+TGG | + | chr5_3:20723391-20723410 | None:intergenic | 25.0% |
!!! | CACTTCTTTCAAACATTTTT+TGG | + | chr5_3:20723404-20723423 | None:intergenic | 25.0% |
! | ATATGTTAGATCAAAGCAAA+AGG | - | chr5_3:20723486-20723505 | Msa0804740:CDS | 25.0% |
! | AAAAGGATAAGATAATGATG+AGG | - | chr5_3:20723503-20723522 | Msa0804740:CDS | 25.0% |
! | AAAGGATAAGATAATGATGA+GGG | - | chr5_3:20723504-20723523 | Msa0804740:CDS | 25.0% |
! | ATATAATAGGCATAGTAAGA+AGG | + | chr5_3:20723627-20723646 | None:intergenic | 25.0% |
! | TCTTACTATGCCTATTATAT+TGG | - | chr5_3:20723627-20723646 | Msa0804740:intron | 25.0% |
! | CTTACTATGCCTATTATATT+GGG | - | chr5_3:20723628-20723647 | Msa0804740:intron | 25.0% |
! | TTACTATGCCTATTATATTG+GGG | - | chr5_3:20723629-20723648 | Msa0804740:intron | 25.0% |
! | AATAATAACATGGATCATCA+TGG | - | chr5_3:20722924-20722943 | Msa0804740:three_prime_UTR | 25.0% |
! | ATCAACAAAACTATGAAGAA+TGG | + | chr5_3:20723013-20723032 | None:intergenic | 25.0% |
! | GTCAAATAAAAATGTTCTTG+AGG | - | chr5_3:20723078-20723097 | Msa0804740:CDS | 25.0% |
! | AGGAACTAAAATTGAAATCA+AGG | - | chr5_3:20723324-20723343 | Msa0804740:CDS | 25.0% |
! | AACTAAAATTGAAATCAAGG+AGG | - | chr5_3:20723327-20723346 | Msa0804740:CDS | 25.0% |
!!! | CATTTTTTGGGTCTAAAATT+TGG | + | chr5_3:20723391-20723410 | None:intergenic | 25.0% |
!!! | CACTTCTTTCAAACATTTTT+TGG | + | chr5_3:20723404-20723423 | None:intergenic | 25.0% |
! | ATATGTTAGATCAAAGCAAA+AGG | - | chr5_3:20723486-20723505 | Msa0804740:CDS | 25.0% |
! | AAAAGGATAAGATAATGATG+AGG | - | chr5_3:20723503-20723522 | Msa0804740:CDS | 25.0% |
! | AAAGGATAAGATAATGATGA+GGG | - | chr5_3:20723504-20723523 | Msa0804740:CDS | 25.0% |
! | ATATAATAGGCATAGTAAGA+AGG | + | chr5_3:20723627-20723646 | None:intergenic | 25.0% |
! | TCTTACTATGCCTATTATAT+TGG | - | chr5_3:20723627-20723646 | Msa0804740:intron | 25.0% |
! | CTTACTATGCCTATTATATT+GGG | - | chr5_3:20723628-20723647 | Msa0804740:intron | 25.0% |
! | TTACTATGCCTATTATATTG+GGG | - | chr5_3:20723629-20723648 | Msa0804740:intron | 25.0% |
GATTGAAAGAGATTTAGAAG+AGG | - | chr5_3:20723150-20723169 | Msa0804740:CDS | 30.0% | |
AGATTTAGAAGAGGAGATTA+AGG | - | chr5_3:20723159-20723178 | Msa0804740:CDS | 30.0% | |
ATTATAAGGATGAGAATGGA+AGG | - | chr5_3:20723301-20723320 | Msa0804740:CDS | 30.0% | |
AAGAAGTGAAGAAGATTGAT+TGG | - | chr5_3:20723416-20723435 | Msa0804740:CDS | 30.0% | |
AGAAGTGAAGAAGATTGATT+GGG | - | chr5_3:20723417-20723436 | Msa0804740:CDS | 30.0% | |
! | ATGATCCTTTTACAGGAATA+GGG | + | chr5_3:20723468-20723487 | None:intergenic | 30.0% |
! | TATGATCCTTTTACAGGAAT+AGG | + | chr5_3:20723469-20723488 | None:intergenic | 30.0% |
! | CTAACATATGATCCTTTTAC+AGG | + | chr5_3:20723475-20723494 | None:intergenic | 30.0% |
AAGGATAAGATAATGATGAG+GGG | - | chr5_3:20723505-20723524 | Msa0804740:intron | 30.0% | |
GATTGAAAGAGATTTAGAAG+AGG | - | chr5_3:20723150-20723169 | Msa0804740:CDS | 30.0% | |
AGATTTAGAAGAGGAGATTA+AGG | - | chr5_3:20723159-20723178 | Msa0804740:CDS | 30.0% | |
ATTATAAGGATGAGAATGGA+AGG | - | chr5_3:20723301-20723320 | Msa0804740:CDS | 30.0% | |
AAGAAGTGAAGAAGATTGAT+TGG | - | chr5_3:20723416-20723435 | Msa0804740:CDS | 30.0% | |
AGAAGTGAAGAAGATTGATT+GGG | - | chr5_3:20723417-20723436 | Msa0804740:CDS | 30.0% | |
! | ATGATCCTTTTACAGGAATA+GGG | + | chr5_3:20723468-20723487 | None:intergenic | 30.0% |
! | TATGATCCTTTTACAGGAAT+AGG | + | chr5_3:20723469-20723488 | None:intergenic | 30.0% |
! | CTAACATATGATCCTTTTAC+AGG | + | chr5_3:20723475-20723494 | None:intergenic | 30.0% |
AAGGATAAGATAATGATGAG+GGG | - | chr5_3:20723505-20723524 | Msa0804740:intron | 30.0% | |
CTAGAATTTCACTTCACCTT+TGG | + | chr5_3:20722958-20722977 | None:intergenic | 35.0% | |
CAAAGGTGAAGTGAAATTCT+AGG | - | chr5_3:20722956-20722975 | Msa0804740:three_prime_UTR | 35.0% | |
TTAGAAGAGGAGATTAAGGA+AGG | - | chr5_3:20723163-20723182 | Msa0804740:CDS | 35.0% | |
! | CAAAATTAGAGCACTTTCTG+AGG | - | chr5_3:20723276-20723295 | Msa0804740:CDS | 35.0% |
!! | CACTTTCTGAGGTGATTATA+AGG | - | chr5_3:20723287-20723306 | Msa0804740:CDS | 35.0% |
GGTGATTATAAGGATGAGAA+TGG | - | chr5_3:20723297-20723316 | Msa0804740:CDS | 35.0% | |
GGATAAGAAGCTACTTCAAT+TGG | - | chr5_3:20723543-20723562 | Msa0804740:intron | 35.0% | |
! | TTGGGGTAAATTTTCCTGAT+CGG | - | chr5_3:20723646-20723665 | Msa0804740:exon | 35.0% |
AACGTTATTCATATCCGATC+AGG | + | chr5_3:20723663-20723682 | None:intergenic | 35.0% | |
CTAGAATTTCACTTCACCTT+TGG | + | chr5_3:20722958-20722977 | None:intergenic | 35.0% | |
CAAAGGTGAAGTGAAATTCT+AGG | - | chr5_3:20722956-20722975 | Msa0804740:three_prime_UTR | 35.0% | |
TTAGAAGAGGAGATTAAGGA+AGG | - | chr5_3:20723163-20723182 | Msa0804740:CDS | 35.0% | |
! | CAAAATTAGAGCACTTTCTG+AGG | - | chr5_3:20723276-20723295 | Msa0804740:CDS | 35.0% |
!! | CACTTTCTGAGGTGATTATA+AGG | - | chr5_3:20723287-20723306 | Msa0804740:CDS | 35.0% |
GGTGATTATAAGGATGAGAA+TGG | - | chr5_3:20723297-20723316 | Msa0804740:CDS | 35.0% | |
GGATAAGAAGCTACTTCAAT+TGG | - | chr5_3:20723543-20723562 | Msa0804740:intron | 35.0% | |
! | TTGGGGTAAATTTTCCTGAT+CGG | - | chr5_3:20723646-20723665 | Msa0804740:exon | 35.0% |
AACGTTATTCATATCCGATC+AGG | + | chr5_3:20723663-20723682 | None:intergenic | 35.0% | |
CATCATGGAATGTACACCAA+AGG | - | chr5_3:20722939-20722958 | Msa0804740:three_prime_UTR | 40.0% | |
TTCAACTCCTCTGCTGAAAT+AGG | + | chr5_3:20723106-20723125 | None:intergenic | 40.0% | |
CCTTTCTCTGCTGAAAAATC+CGG | + | chr5_3:20723216-20723235 | None:intergenic | 40.0% | |
AAAGGAGAGAGATGCAAAAG+AGG | - | chr5_3:20723231-20723250 | Msa0804740:CDS | 40.0% | |
ATAAGGATGAGAATGGAAGG+AGG | - | chr5_3:20723304-20723323 | Msa0804740:CDS | 40.0% | |
TTGATTGGGAGAAGAGTTTG+AGG | - | chr5_3:20723431-20723450 | Msa0804740:CDS | 40.0% | |
TGATTGGGAGAAGAGTTTGA+GGG | - | chr5_3:20723432-20723451 | Msa0804740:CDS | 40.0% | |
TCAAGCCCTATTCCTGTAAA+AGG | - | chr5_3:20723460-20723479 | Msa0804740:CDS | 40.0% | |
AGAAGCTACTTCAATTGGTG+TGG | - | chr5_3:20723548-20723567 | Msa0804740:intron | 40.0% | |
TTGGTGTGGAAGGTTTAAAG+TGG | - | chr5_3:20723562-20723581 | Msa0804740:intron | 40.0% | |
CATCATGGAATGTACACCAA+AGG | - | chr5_3:20722939-20722958 | Msa0804740:three_prime_UTR | 40.0% | |
TTCAACTCCTCTGCTGAAAT+AGG | + | chr5_3:20723106-20723125 | None:intergenic | 40.0% | |
CCTTTCTCTGCTGAAAAATC+CGG | + | chr5_3:20723216-20723235 | None:intergenic | 40.0% | |
AAAGGAGAGAGATGCAAAAG+AGG | - | chr5_3:20723231-20723250 | Msa0804740:CDS | 40.0% | |
ATAAGGATGAGAATGGAAGG+AGG | - | chr5_3:20723304-20723323 | Msa0804740:CDS | 40.0% | |
TTGATTGGGAGAAGAGTTTG+AGG | - | chr5_3:20723431-20723450 | Msa0804740:CDS | 40.0% | |
TGATTGGGAGAAGAGTTTGA+GGG | - | chr5_3:20723432-20723451 | Msa0804740:CDS | 40.0% | |
TCAAGCCCTATTCCTGTAAA+AGG | - | chr5_3:20723460-20723479 | Msa0804740:CDS | 40.0% | |
AGAAGCTACTTCAATTGGTG+TGG | - | chr5_3:20723548-20723567 | Msa0804740:intron | 40.0% | |
TTGGTGTGGAAGGTTTAAAG+TGG | - | chr5_3:20723562-20723581 | Msa0804740:intron | 40.0% | |
TGAGGTTCCTATTTCAGCAG+AGG | - | chr5_3:20723096-20723115 | Msa0804740:CDS | 45.0% | |
!! | ATTTTGCTCGTCGATTGCTC+CGG | - | chr5_3:20723194-20723213 | Msa0804740:CDS | 45.0% |
!! | CCGGATTTTTCAGCAGAGAA+AGG | - | chr5_3:20723213-20723232 | Msa0804740:CDS | 45.0% |
GCTACTTCAATTGGTGTGGA+AGG | - | chr5_3:20723552-20723571 | Msa0804740:intron | 45.0% | |
TGAGGTTCCTATTTCAGCAG+AGG | - | chr5_3:20723096-20723115 | Msa0804740:CDS | 45.0% | |
!! | ATTTTGCTCGTCGATTGCTC+CGG | - | chr5_3:20723194-20723213 | Msa0804740:CDS | 45.0% |
!! | CCGGATTTTTCAGCAGAGAA+AGG | - | chr5_3:20723213-20723232 | Msa0804740:CDS | 45.0% |
GCTACTTCAATTGGTGTGGA+AGG | - | chr5_3:20723552-20723571 | Msa0804740:intron | 45.0% | |
!! | ATATTTAATTAATAATAACA+TGG | - | chr5_3:20722914-20722933 | Msa0804740:three_prime_UTR | 5.0% |
!! | ATATTTAATTAATAATAACA+TGG | - | chr5_3:20722914-20722933 | Msa0804740:three_prime_UTR | 5.0% |
GAGGGGAAAGAATGCAAGTG+AGG | - | chr5_3:20723522-20723541 | Msa0804740:intron | 50.0% | |
GAGGGGAAAGAATGCAAGTG+AGG | - | chr5_3:20723522-20723541 | Msa0804740:intron | 50.0% | |
TGGGAGAAGAGTTTGAGGGC+AGG | - | chr5_3:20723436-20723455 | Msa0804740:CDS | 55.0% | |
TGGGAGAAGAGTTTGAGGGC+AGG | - | chr5_3:20723436-20723455 | Msa0804740:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_3 | gene | 20722902 | 20723695 | 20722902 | ID=Msa0804740;Name=Msa0804740 |
chr5_3 | mRNA | 20722902 | 20723695 | 20722902 | ID=Msa0804740-mRNA-1;Parent=Msa0804740;Name=Msa0804740-mRNA-1;_AED=0.01;_eAED=0.01;_QI=31|1|1|1|1|1|2|116|177 |
chr5_3 | exon | 20722902 | 20723523 | 20722902 | ID=Msa0804740-mRNA-1:exon:8378;Parent=Msa0804740-mRNA-1 |
chr5_3 | exon | 20723637 | 20723695 | 20723637 | ID=Msa0804740-mRNA-1:exon:8377;Parent=Msa0804740-mRNA-1 |
chr5_3 | five_prime_UTR | 20723665 | 20723695 | 20723665 | ID=Msa0804740-mRNA-1:five_prime_utr;Parent=Msa0804740-mRNA-1 |
chr5_3 | CDS | 20723637 | 20723664 | 20723637 | ID=Msa0804740-mRNA-1:cds;Parent=Msa0804740-mRNA-1 |
chr5_3 | CDS | 20723018 | 20723523 | 20723018 | ID=Msa0804740-mRNA-1:cds;Parent=Msa0804740-mRNA-1 |
chr5_3 | three_prime_UTR | 20722902 | 20723017 | 20722902 | ID=Msa0804740-mRNA-1:three_prime_utr;Parent=Msa0804740-mRNA-1 |
Gene Sequence |
Protein sequence |