Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0458950 | KEH34398.1 | 91.388 | 209 | 18 | 0 | 1 | 209 | 1 | 209 | 4.75e-137 | 400 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0458950 | sp|Q8GYW8|SCT_ARATH | 42.381 | 210 | 109 | 5 | 1 | 206 | 1 | 202 | 1.31e-43 | 154 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0458950 | A0A072UZ78 | 91.388 | 209 | 18 | 0 | 1 | 209 | 1 | 209 | 2.27e-137 | 400 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012440 | Msa0458950 | 0.860021 | 2.760987e-63 | -8.615850e-47 |
| Msa0018220 | Msa0458950 | 0.811800 | 5.839886e-51 | -8.615850e-47 |
| Msa0036430 | Msa0458950 | 0.830384 | 3.027823e-55 | -8.615850e-47 |
| Msa0044020 | Msa0458950 | 0.800520 | 1.386604e-48 | -8.615850e-47 |
| Msa0052020 | Msa0458950 | 0.819576 | 1.080407e-52 | -8.615850e-47 |
| Msa0052460 | Msa0458950 | 0.807054 | 6.095719e-50 | -8.615850e-47 |
| Msa0053110 | Msa0458950 | 0.806403 | 8.364823e-50 | -8.615850e-47 |
| Msa0057240 | Msa0458950 | 0.863321 | 2.705105e-64 | -8.615850e-47 |
| Msa0084500 | Msa0458950 | 0.820619 | 6.233343e-53 | -8.615850e-47 |
| Msa0097050 | Msa0458950 | 0.810845 | 9.413843e-51 | -8.615850e-47 |
| Msa0098440 | Msa0458950 | 0.805482 | 1.306589e-49 | -8.615850e-47 |
| Msa0103000 | Msa0458950 | 0.804328 | 2.276835e-49 | -8.615850e-47 |
| Msa0109950 | Msa0458950 | 0.812572 | 3.963168e-51 | -8.615850e-47 |
| Msa0120330 | Msa0458950 | 0.817129 | 3.870741e-52 | -8.615850e-47 |
| Msa0130010 | Msa0458950 | 0.804232 | 2.384523e-49 | -8.615850e-47 |
| Msa0130570 | Msa0458950 | 0.817604 | 3.024686e-52 | -8.615850e-47 |
| Msa0134130 | Msa0458950 | 0.810404 | 1.172317e-50 | -8.615850e-47 |
| Msa0139900 | Msa0458950 | 0.802557 | 5.302462e-49 | -8.615850e-47 |
| Msa0141140 | Msa0458950 | 0.811838 | 5.729351e-51 | -8.615850e-47 |
| Msa0141670 | Msa0458950 | 0.803693 | 3.086028e-49 | -8.615850e-47 |
| Msa0147560 | Msa0458950 | 0.803679 | 3.106928e-49 | -8.615850e-47 |
| Msa0149560 | Msa0458950 | 0.856976 | 2.234912e-62 | -8.615850e-47 |
| Msa0161100 | Msa0458950 | 0.828507 | 8.649475e-55 | -8.615850e-47 |
| Msa0161200 | Msa0458950 | 0.846398 | 2.227068e-59 | -8.615850e-47 |
| Msa0161210 | Msa0458950 | 0.814199 | 1.739837e-51 | -8.615850e-47 |
| Msa0161220 | Msa0458950 | 0.820799 | 5.667862e-53 | -8.615850e-47 |
| Msa0162050 | Msa0458950 | 0.802096 | 6.598512e-49 | -8.615850e-47 |
| Msa0162070 | Msa0458950 | 0.800556 | 1.363630e-48 | -8.615850e-47 |
| Msa0176470 | Msa0458950 | 0.819265 | 1.271787e-52 | -8.615850e-47 |
| Msa0184990 | Msa0458950 | 0.821684 | 3.542053e-53 | -8.615850e-47 |
| Msa0200970 | Msa0458950 | 0.803858 | 2.851739e-49 | -8.615850e-47 |
| Msa0203030 | Msa0458950 | 0.823846 | 1.111480e-53 | -8.615850e-47 |
| Msa0203160 | Msa0458950 | 0.850065 | 2.161024e-60 | -8.615850e-47 |
| Msa0207180 | Msa0458950 | 0.833074 | 6.570648e-56 | -8.615850e-47 |
| Msa0219190 | Msa0458950 | 0.877980 | 4.063675e-69 | -8.615850e-47 |
| Msa0221090 | Msa0458950 | 0.808633 | 2.814556e-50 | -8.615850e-47 |
| Msa0227510 | Msa0458950 | 0.804505 | 2.091579e-49 | -8.615850e-47 |
| Msa0230400 | Msa0458950 | 0.802130 | 6.492140e-49 | -8.615850e-47 |
| Msa0235890 | Msa0458950 | 0.849091 | 4.040134e-60 | -8.615850e-47 |
| Msa0366010 | Msa0458950 | 0.855661 | 5.431356e-62 | -8.615850e-47 |
| Msa0370600 | Msa0458950 | 0.809827 | 1.561031e-50 | -8.615850e-47 |
| Msa0371540 | Msa0458950 | 0.800358 | 1.496313e-48 | -8.615850e-47 |
| Msa0371610 | Msa0458950 | 0.804788 | 1.826126e-49 | -8.615850e-47 |
| Msa0378500 | Msa0458950 | 0.812733 | 3.654323e-51 | -8.615850e-47 |
| Msa0382560 | Msa0458950 | 0.808758 | 2.646123e-50 | -8.615850e-47 |
| Msa0413930 | Msa0458950 | 0.941844 | 2.046036e-101 | -8.615850e-47 |
| Msa0418200 | Msa0458950 | 0.821519 | 3.867300e-53 | -8.615850e-47 |
| Msa0419970 | Msa0458950 | 0.806446 | 8.193937e-50 | -8.615850e-47 |
| Msa0424370 | Msa0458950 | 0.806205 | 9.211698e-50 | -8.615850e-47 |
| Msa0430820 | Msa0458950 | 0.800326 | 1.518865e-48 | -8.615850e-47 |
| Msa0436460 | Msa0458950 | 0.837202 | 5.972182e-57 | -8.615850e-47 |
| Msa0436500 | Msa0458950 | 0.818004 | 2.457251e-52 | -8.615850e-47 |
| Msa0444010 | Msa0458950 | 0.841357 | 4.992367e-58 | -8.615850e-47 |
| Msa0458950 | Msa0464540 | 0.805971 | 1.031848e-49 | -8.615850e-47 |
| Msa0458950 | Msa0471270 | 0.802938 | 4.423215e-49 | -8.615850e-47 |
| Msa0458950 | Msa0484690 | 0.823767 | 1.159902e-53 | -8.615850e-47 |
| Msa0458950 | Msa0517340 | 0.809689 | 1.670865e-50 | -8.615850e-47 |
| Msa0458950 | Msa0525240 | 0.809195 | 2.133816e-50 | -8.615850e-47 |
| Msa0458950 | Msa0557630 | 0.809971 | 1.453738e-50 | -8.615850e-47 |
| Msa0458950 | Msa0571080 | 0.826995 | 1.996920e-54 | -8.615850e-47 |
| Msa0458950 | Msa0575250 | 0.822451 | 2.352922e-53 | -8.615850e-47 |
| Msa0458950 | Msa0581340 | 0.815485 | 9.026687e-52 | -8.615850e-47 |
| Msa0458950 | Msa0603680 | 0.801001 | 1.106359e-48 | -8.615850e-47 |
| Msa0458950 | Msa0619980 | 0.851821 | 6.911259e-61 | -8.615850e-47 |
| Msa0458950 | Msa0620260 | 0.820021 | 8.546690e-53 | -8.615850e-47 |
| Msa0458950 | Msa0632590 | 0.830221 | 3.318801e-55 | -8.615850e-47 |
| Msa0458950 | Msa0645050 | 0.812621 | 3.866744e-51 | -8.615850e-47 |
| Msa0458950 | Msa0652980 | 0.825983 | 3.480677e-54 | -8.615850e-47 |
| Msa0458950 | Msa0663090 | 0.853580 | 2.175121e-61 | -8.615850e-47 |
| Msa0458950 | Msa0663680 | 0.821202 | 4.576980e-53 | -8.615850e-47 |
| Msa0458950 | Msa0685330 | 0.806635 | 7.473570e-50 | -8.615850e-47 |
| Msa0458950 | Msa0691160 | 0.814863 | 1.240528e-51 | -8.615850e-47 |
| Msa0458950 | Msa0706370 | 0.845482 | 3.951058e-59 | -8.615850e-47 |
| Msa0458950 | Msa0707220 | 0.839138 | 1.896089e-57 | -8.615850e-47 |
| Msa0458950 | Msa0708640 | 0.802245 | 6.149019e-49 | -8.615850e-47 |
| Msa0458950 | Msa0737190 | 0.807828 | 4.176915e-50 | -8.615850e-47 |
| Msa0458950 | Msa0739430 | 0.813517 | 2.459390e-51 | -8.615850e-47 |
| Msa0458950 | Msa0740420 | 0.808610 | 2.846017e-50 | -8.615850e-47 |
| Msa0458950 | Msa0741900 | 0.819678 | 1.023700e-52 | -8.615850e-47 |
| Msa0458950 | Msa0747780 | 0.808082 | 3.687539e-50 | -8.615850e-47 |
| Msa0458950 | Msa0754030 | 0.813207 | 2.876961e-51 | -8.615850e-47 |
| Msa0458950 | Msa0778930 | 0.818914 | 1.528426e-52 | -8.615850e-47 |
| Msa0458950 | Msa0799210 | 0.801161 | 1.025878e-48 | -8.615850e-47 |
| Msa0458950 | Msa0804740 | 0.815152 | 1.070331e-51 | -8.615850e-47 |
| Msa0458950 | Msa0807110 | 0.815015 | 1.147928e-51 | -8.615850e-47 |
| Msa0458950 | Msa0810020 | 0.832869 | 7.389567e-56 | -8.615850e-47 |
| Msa0458950 | Msa0816450 | 0.807093 | 5.980846e-50 | -8.615850e-47 |
| Msa0458950 | Msa0820670 | 0.821699 | 3.513414e-53 | -8.615850e-47 |
| Msa0458950 | Msa0822990 | 0.818169 | 2.255406e-52 | -8.615850e-47 |
| Msa0458950 | Msa0833040 | 0.812022 | 5.224147e-51 | -8.615850e-47 |
| Msa0458950 | Msa0850500 | 0.821953 | 3.069387e-53 | -8.615850e-47 |
| Msa0458950 | Msa0862100 | 0.834386 | 3.089265e-56 | -8.615850e-47 |
| Msa0458950 | Msa0867350 | 0.805958 | 1.038339e-49 | -8.615850e-47 |
| Msa0458950 | Msa0870620 | 0.824679 | 7.082169e-54 | -8.615850e-47 |
| Msa0458950 | Msa0870690 | 0.818259 | 2.151621e-52 | -8.615850e-47 |
| Msa0458950 | Msa0872310 | 0.819001 | 1.460199e-52 | -8.615850e-47 |
| Msa0458950 | Msa0873190 | 0.856107 | 4.023249e-62 | -8.615850e-47 |
| Msa0458950 | Msa0880500 | 0.802965 | 4.368285e-49 | -8.615850e-47 |
| Msa0458950 | Msa0885060 | 0.831445 | 1.662372e-55 | -8.615850e-47 |
| Msa0458950 | Msa0886980 | 0.802710 | 4.931495e-49 | -8.615850e-47 |
| Msa0458950 | Msa0905550 | 0.830852 | 2.324745e-55 | -8.615850e-47 |
| Msa0458950 | Msa0906320 | 0.819100 | 1.386740e-52 | -8.615850e-47 |
| Msa0458950 | Msa0906370 | 0.840246 | 9.761105e-58 | -8.615850e-47 |
| Msa0458950 | Msa0930330 | 0.816654 | 4.948132e-52 | -8.615850e-47 |
| Msa0458950 | Msa0937550 | 0.810438 | 1.152677e-50 | -8.615850e-47 |
| Msa0458950 | Msa0938430 | 0.828463 | 8.867194e-55 | -8.615850e-47 |
| Msa0458950 | Msa0946320 | 0.823998 | 1.024326e-53 | -8.615850e-47 |
| Msa0458950 | Msa0951710 | 0.803125 | 4.047583e-49 | -8.615850e-47 |
| Msa0458950 | Msa0974750 | 0.801721 | 7.878579e-49 | -8.615850e-47 |
| Msa0458950 | Msa0975580 | 0.862425 | 5.114217e-64 | -8.615850e-47 |
| Msa0458950 | Msa0988480 | 0.826370 | 2.816510e-54 | -8.615850e-47 |
| Msa0458950 | Msa1007350 | 0.826294 | 2.935278e-54 | -8.615850e-47 |
| Msa0458950 | Msa1009000 | 0.803375 | 3.591607e-49 | -8.615850e-47 |
| Msa0458950 | Msa1010730 | 0.810800 | 9.628184e-51 | -8.615850e-47 |
| Msa0458950 | Msa1014270 | 0.819845 | 9.374715e-53 | -8.615850e-47 |
| Msa0458950 | Msa1018790 | 0.820351 | 7.182818e-53 | -8.615850e-47 |
| Msa0458950 | Msa1020710 | 0.816378 | 5.703126e-52 | -8.615850e-47 |
| Msa0458950 | Msa1032450 | 0.810313 | 1.226365e-50 | -8.615850e-47 |
| Msa0458950 | Msa1033560 | 0.851959 | 6.317102e-61 | -8.615850e-47 |
| Msa0458950 | Msa1037920 | 0.834573 | 2.772219e-56 | -8.615850e-47 |
| Msa0458950 | Msa1041530 | 0.815854 | 7.468092e-52 | -8.615850e-47 |
| Msa0458950 | Msa1055260 | 0.808473 | 3.044172e-50 | -8.615850e-47 |
| Msa0458950 | Msa1055280 | 0.807977 | 3.883664e-50 | -8.615850e-47 |
| Msa0458950 | Msa1055500 | 0.851980 | 6.229459e-61 | -8.615850e-47 |
| Msa0458950 | Msa1073340 | 0.810368 | 1.193680e-50 | -8.615850e-47 |
| Msa0458950 | Msa1073350 | 0.835128 | 2.009735e-56 | -8.615850e-47 |
| Msa0458950 | Msa1081570 | 0.801884 | 7.292665e-49 | -8.615850e-47 |
| Msa0458950 | Msa1097640 | 0.813347 | 2.680241e-51 | -8.615850e-47 |
| Msa0458950 | Msa1100700 | 0.808922 | 2.440660e-50 | -8.615850e-47 |
| Msa0458950 | Msa1113850 | 0.824773 | 6.730415e-54 | -8.615850e-47 |
| Msa0458950 | Msa1116930 | 0.832648 | 8.386121e-56 | -8.615850e-47 |
| Msa0458950 | Msa1123880 | 0.801381 | 9.250320e-49 | -8.615850e-47 |
| Msa0458950 | Msa1127140 | 0.807027 | 6.176570e-50 | -8.615850e-47 |
| Msa0458950 | Msa1129980 | 0.820451 | 6.811840e-53 | -8.615850e-47 |
| Msa0458950 | Msa1136230 | 0.810853 | 9.376433e-51 | -8.615850e-47 |
| Msa0458950 | Msa1139810 | 0.820375 | 7.090065e-53 | -8.615850e-47 |
| Msa0458950 | Msa1145020 | 0.806221 | 9.140084e-50 | -8.615850e-47 |
| Msa0458950 | Msa1151960 | 0.805209 | 1.490576e-49 | -8.615850e-47 |
| Msa0458950 | Msa1160400 | 0.837143 | 6.183072e-57 | -8.615850e-47 |
| Msa0458950 | Msa1166400 | 0.803810 | 2.918656e-49 | -8.615850e-47 |
| Msa0458950 | Msa1201990 | 0.806957 | 6.389819e-50 | -8.615850e-47 |
| Msa0458950 | Msa1213060 | 0.833505 | 5.132198e-56 | -8.615850e-47 |
| Msa0458950 | Msa1221260 | 0.819900 | 9.109665e-53 | -8.615850e-47 |
| Msa0458950 | Msa1221560 | 0.816200 | 6.252002e-52 | -8.615850e-47 |
| Msa0458950 | Msa1228610 | 0.816353 | 5.777820e-52 | -8.615850e-47 |
| Msa0458950 | Msa1229560 | 0.804463 | 2.134005e-49 | -8.615850e-47 |
| Msa0458950 | Msa1254190 | 0.819856 | 9.324171e-53 | -8.615850e-47 |
| Msa0458950 | Msa1276220 | 0.808156 | 3.557130e-50 | -8.615850e-47 |
| Msa0458950 | Msa1281720 | 0.812453 | 4.207679e-51 | -8.615850e-47 |
| Msa0458950 | Msa1321000 | 0.832694 | 8.166786e-56 | -8.615850e-47 |
| Msa0458950 | Msa1337340 | 0.809203 | 2.125380e-50 | -8.615850e-47 |
| Msa0458950 | Msa1354040 | 0.809830 | 1.558652e-50 | -8.615850e-47 |
| Msa0458950 | Msa1355400 | 0.814192 | 1.745914e-51 | -8.615850e-47 |
| Msa0458950 | Msa1359280 | 0.817376 | 3.404496e-52 | -8.615850e-47 |
| Msa0458950 | Msa1365200 | 0.802328 | 5.911519e-49 | -8.615850e-47 |
| Msa0458950 | Msa1374440 | 0.825295 | 5.066047e-54 | -8.615850e-47 |
| Msa0458950 | Msa1379990 | 0.855636 | 5.523251e-62 | -8.615850e-47 |
| Msa0458950 | Msa1408870 | 0.816032 | 6.815141e-52 | -8.615850e-47 |
| Msa0458950 | Msa1420060 | 0.898387 | 5.580033e-77 | -8.615850e-47 |
| Msa0458950 | Msa1422270 | 0.812965 | 3.250197e-51 | -8.615850e-47 |
| Msa0458950 | Msa1429420 | 0.861410 | 1.046251e-63 | -8.615850e-47 |
| Msa0458950 | Msa1429830 | 0.806922 | 6.502164e-50 | -8.615850e-47 |
| Msa0458950 | Msa1435670 | 0.819697 | 1.013653e-52 | -8.615850e-47 |
| Msa0458950 | Msa1462440 | 0.802543 | 5.338587e-49 | -8.615850e-47 |
| Msa0246280 | Msa0458950 | 0.835602 | 1.525168e-56 | -8.615850e-47 |
| Msa0260970 | Msa0458950 | 0.804536 | 2.061189e-49 | -8.615850e-47 |
| Msa0269360 | Msa0458950 | 0.803687 | 3.094456e-49 | -8.615850e-47 |
| Msa0274780 | Msa0458950 | 0.802631 | 5.118366e-49 | -8.615850e-47 |
| Msa0298240 | Msa0458950 | 0.850605 | 1.523801e-60 | -8.615850e-47 |
| Msa0315480 | Msa0458950 | 0.834988 | 2.180042e-56 | -8.615850e-47 |
| Msa0322830 | Msa0458950 | 0.800379 | 1.481352e-48 | -8.615850e-47 |
| Msa0323610 | Msa0458950 | 0.807959 | 3.917717e-50 | -8.615850e-47 |
| Msa0337850 | Msa0458950 | 0.805813 | 1.113684e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0458950 | MtrunA17_Chr3g0106721 | 89.952 | 209 | 19 | 1 | 1 | 209 | 1 | 207 | 2.45e-134 | 384 |
| Msa0458950 | MtrunA17_Chr3g0106661 | 83.981 | 206 | 31 | 1 | 1 | 206 | 1 | 204 | 3.28e-128 | 369 |
| Msa0458950 | MtrunA17_Chr3g0106711 | 73.810 | 210 | 51 | 3 | 1 | 209 | 1 | 207 | 1.50e-112 | 321 |
| Msa0458950 | MtrunA17_Chr3g0106691 | 74.163 | 209 | 51 | 2 | 1 | 209 | 47 | 252 | 2.77e-110 | 325 |
| Msa0458950 | MtrunA17_Chr6g0470591 | 62.500 | 200 | 73 | 1 | 9 | 206 | 8 | 207 | 1.29e-86 | 263 |
| Msa0458950 | MtrunA17_Chr4g0027071 | 55.122 | 205 | 84 | 5 | 3 | 206 | 4 | 201 | 3.34e-65 | 208 |
| Msa0458950 | MtrunA17_Chr3g0106761 | 60.000 | 150 | 57 | 1 | 57 | 206 | 1 | 147 | 1.38e-58 | 189 |
| Msa0458950 | MtrunA17_Chr3g0106741 | 56.886 | 167 | 64 | 2 | 40 | 206 | 20 | 178 | 1.10e-57 | 187 |
| Msa0458950 | MtrunA17_Chr3g0106641 | 92.222 | 90 | 7 | 0 | 1 | 90 | 44 | 133 | 1.50e-53 | 168 |
| Msa0458950 | MtrunA17_Chr3g0106771 | 74.157 | 89 | 21 | 1 | 1 | 89 | 1 | 87 | 1.30e-38 | 129 |
| Msa0458950 | MtrunA17_Chr3g0106751 | 73.034 | 89 | 22 | 1 | 1 | 89 | 1 | 87 | 3.57e-38 | 127 |
| Msa0458950 | MtrunA17_Chr3g0106651 | 72.840 | 81 | 21 | 1 | 10 | 89 | 38 | 118 | 3.86e-33 | 115 |
| Msa0458950 | MtrunA17_Chr7g0270771 | 38.298 | 188 | 102 | 4 | 19 | 205 | 12 | 186 | 1.86e-31 | 115 |
| Msa0458950 | MtrunA17_Chr3g0106631 | 83.636 | 55 | 9 | 0 | 155 | 209 | 1 | 55 | 3.33e-28 | 104 |
| Msa0458950 | MtrunA17_Chr2g0283361 | 32.673 | 202 | 123 | 6 | 12 | 209 | 2 | 194 | 7.12e-26 | 103 |
| Msa0458950 | MtrunA17_Chr7g0273761 | 35.468 | 203 | 122 | 6 | 6 | 206 | 376 | 571 | 1.93e-24 | 100 |
| Msa0458950 | MtrunA17_Chr1g0165661 | 31.683 | 202 | 126 | 6 | 8 | 206 | 5 | 197 | 2.99e-22 | 93.6 |
| Msa0458950 | MtrunA17_Chr8g0386141 | 32.275 | 189 | 109 | 6 | 10 | 193 | 5 | 179 | 4.45e-22 | 93.2 |
| Msa0458950 | MtrunA17_Chr5g0433641 | 31.373 | 204 | 128 | 4 | 6 | 206 | 4 | 198 | 1.54e-21 | 91.7 |
| Msa0458950 | MtrunA17_Chr1g0165681 | 32.461 | 191 | 117 | 6 | 19 | 206 | 16 | 197 | 2.05e-21 | 91.3 |
| Msa0458950 | MtrunA17_Chr7g0273781 | 32.124 | 193 | 115 | 5 | 19 | 206 | 50 | 231 | 3.39e-21 | 90.9 |
| Msa0458950 | MtrunA17_Chr1g0165671 | 32.632 | 190 | 118 | 4 | 19 | 206 | 34 | 215 | 5.86e-21 | 90.1 |
| Msa0458950 | MtrunA17_Chr1g0191081 | 30.000 | 190 | 124 | 4 | 21 | 206 | 22 | 206 | 1.51e-20 | 89.0 |
| Msa0458950 | MtrunA17_Chr7g0273721 | 30.392 | 204 | 130 | 4 | 6 | 206 | 5 | 199 | 4.10e-20 | 87.8 |
| Msa0458950 | MtrunA17_Chr1g0165711 | 32.105 | 190 | 119 | 5 | 19 | 206 | 16 | 197 | 4.26e-20 | 87.4 |
| Msa0458950 | MtrunA17_Chr7g0224391 | 32.836 | 201 | 118 | 8 | 8 | 205 | 13 | 199 | 9.18e-20 | 86.7 |
| Msa0458950 | MtrunA17_Chr7g0273791 | 30.882 | 204 | 129 | 4 | 6 | 206 | 4 | 198 | 2.39e-19 | 85.5 |
| Msa0458950 | MtrunA17_Chr2g0306321 | 33.023 | 215 | 118 | 12 | 7 | 206 | 13 | 216 | 5.41e-19 | 84.3 |
| Msa0458950 | MtrunA17_Chr3g0113821 | 29.592 | 196 | 129 | 4 | 12 | 205 | 5 | 193 | 8.38e-19 | 84.0 |
| Msa0458950 | MtrunA17_Chr7g0273731 | 30.392 | 204 | 130 | 4 | 6 | 206 | 87 | 281 | 9.68e-19 | 84.0 |
| Msa0458950 | MtrunA17_Chr3g0132001 | 30.851 | 188 | 112 | 8 | 18 | 199 | 20 | 195 | 8.22e-15 | 72.4 |
| Msa0458950 | MtrunA17_Chr4g0004691 | 28.090 | 178 | 112 | 4 | 20 | 195 | 12 | 175 | 1.02e-11 | 61.2 |
| Msa0458950 | MtrunA17_Chr7g0253541 | 28.421 | 190 | 124 | 6 | 20 | 205 | 12 | 193 | 2.62e-11 | 62.0 |
| Msa0458950 | MtrunA17_Chr4g0054081 | 33.594 | 128 | 77 | 4 | 69 | 194 | 64 | 185 | 2.75e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0458950 | AT5G07080.1 | 43.500 | 200 | 108 | 3 | 6 | 205 | 8 | 202 | 2.40e-48 | 164 |
| Msa0458950 | AT2G25150.1 | 42.381 | 210 | 109 | 5 | 1 | 206 | 1 | 202 | 1.33e-44 | 154 |
| Msa0458950 | AT2G23510.1 | 40.957 | 188 | 107 | 2 | 19 | 206 | 20 | 203 | 1.04e-41 | 147 |
| Msa0458950 | AT3G47170.1 | 40.909 | 198 | 110 | 4 | 12 | 205 | 12 | 206 | 3.79e-38 | 137 |
| Msa0458950 | AT1G28680.2 | 39.901 | 203 | 109 | 5 | 12 | 209 | 4 | 198 | 1.63e-35 | 129 |
| Msa0458950 | AT1G28680.1 | 39.901 | 203 | 109 | 5 | 12 | 209 | 4 | 198 | 4.71e-35 | 129 |
| Msa0458950 | AT3G62160.1 | 35.789 | 190 | 109 | 4 | 18 | 206 | 11 | 188 | 6.27e-29 | 112 |
| Msa0458950 | AT5G17540.1 | 30.693 | 202 | 127 | 6 | 8 | 205 | 5 | 197 | 1.29e-19 | 86.7 |
| Msa0458950 | AT5G41040.1 | 30.688 | 189 | 116 | 6 | 8 | 193 | 29 | 205 | 2.03e-19 | 85.9 |
| Msa0458950 | AT5G41040.2 | 30.688 | 189 | 116 | 6 | 8 | 193 | 13 | 189 | 2.10e-19 | 85.9 |
| Msa0458950 | AT3G03480.1 | 29.703 | 202 | 129 | 5 | 8 | 205 | 15 | 207 | 4.18e-17 | 79.3 |
| Msa0458950 | AT5G63560.1 | 30.366 | 191 | 116 | 8 | 8 | 193 | 5 | 183 | 2.93e-16 | 77.0 |
| Msa0458950 | AT3G48720.1 | 30.055 | 183 | 112 | 7 | 15 | 193 | 12 | 182 | 4.06e-16 | 76.6 |
| Msa0458950 | AT1G03390.1 | 30.841 | 214 | 121 | 8 | 8 | 207 | 13 | 213 | 1.91e-15 | 74.7 |
| Msa0458950 | AT1G24430.1 | 29.851 | 201 | 121 | 8 | 8 | 204 | 1 | 185 | 4.36e-15 | 73.6 |
| Msa0458950 | AT5G57840.1 | 32.796 | 186 | 111 | 8 | 10 | 193 | 1 | 174 | 9.26e-13 | 66.6 |
| Msa0458950 | AT5G47950.1 | 30.256 | 195 | 109 | 11 | 9 | 196 | 3 | 177 | 1.12e-11 | 63.5 |
Find 94 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTTACCTAAAGGGTATTA+TGG | 0.159161 | 3_3:-55239352 | Msa0458950:three_prime_UTR |
| TCATTTCTAGCTTTAGGTTT+AGG | 0.176003 | 3_3:+55241280 | None:intergenic |
| TATCTTTATTCTATTTAAAA+TGG | 0.181601 | 3_3:+55238774 | None:intergenic |
| CATTTCTAGCTTTAGGTTTA+GGG | 0.192317 | 3_3:+55241281 | None:intergenic |
| ACAATACATGATTCTGATTC+AGG | 0.214559 | 3_3:-55241135 | Msa0458950:CDS |
| TTGCTCTGAAGATTTGTAAT+TGG | 0.242943 | 3_3:+55239748 | None:intergenic |
| CCTTTCTTCTCTTCATTACT+TGG | 0.251953 | 3_3:-55239925 | Msa0458950:CDS |
| TCATGATCATCAAGTTTATT+AGG | 0.262038 | 3_3:+55239004 | None:intergenic |
| CATCTTTCATTTCTAGCTTT+AGG | 0.271621 | 3_3:+55241274 | None:intergenic |
| GATTATTATTATCCTCTTGC+AGG | 0.285447 | 3_3:-55241066 | Msa0458950:intron |
| AAGTTACCCTTTGGTATTCA+TGG | 0.294628 | 3_3:-55239841 | Msa0458950:CDS |
| CTTTGTGGCGGTTTCACAAT+TGG | 0.320034 | 3_3:-55239807 | Msa0458950:CDS |
| CACAAACTCAATAAACTCTT+TGG | 0.322202 | 3_3:-55239209 | Msa0458950:three_prime_UTR |
| GGTGTTGGTGGTGCAGAATA+TGG | 0.338152 | 3_3:-55239981 | Msa0458950:CDS |
| GAATTCCCATAATACCCTTT+AGG | 0.340816 | 3_3:+55239346 | None:intergenic |
| AGGACGAAATTGAAGCCTTA+AGG | 0.347234 | 3_3:-55238916 | Msa0458950:three_prime_UTR |
| CTTTACCTAAAGGGTATTAT+GGG | 0.352647 | 3_3:-55239351 | Msa0458950:three_prime_UTR |
| CATGCTATTTGTGACGCATT+TGG | 0.353743 | 3_3:-55239771 | Msa0458950:CDS |
| GGCGGTTTCACAATTGGAAT+GGG | 0.359194 | 3_3:-55239801 | Msa0458950:CDS |
| TCTAAGTGAGTTGAGACATT+TGG | 0.363120 | 3_3:-55239128 | Msa0458950:three_prime_UTR |
| CTAAGTGAGTTGAGACATTT+GGG | 0.370865 | 3_3:-55239127 | Msa0458950:three_prime_UTR |
| TTCAGAGCAATTGTTGAACT+TGG | 0.384460 | 3_3:-55239735 | Msa0458950:CDS |
| AACTTAGGCATAGCAGCAAC+AGG | 0.385326 | 3_3:+55238941 | None:intergenic |
| AGAAGCGGTCTCAAAGGCTT+TGG | 0.391560 | 3_3:-55241088 | Msa0458950:CDS |
| ATTATGATACTTTACCTAAA+GGG | 0.409088 | 3_3:-55239360 | Msa0458950:three_prime_UTR |
| TGCTGCTATGCCTAAGTTCA+AGG | 0.415385 | 3_3:-55238936 | Msa0458950:three_prime_UTR |
| TGCTTTCTGATACGCCATAA+TGG | 0.415397 | 3_3:+55241305 | None:intergenic |
| GCTTGATATTCCTTCTCCTA+TGG | 0.424499 | 3_3:-55239868 | Msa0458950:CDS |
| GTTTCATCACTCGAAGTTGT+AGG | 0.426819 | 3_3:-55238894 | Msa0458950:three_prime_UTR |
| TATGGATAAAAGTTACCCTT+TGG | 0.431832 | 3_3:-55239850 | Msa0458950:CDS |
| TGTCAATGGAAGGAGGAGTT+AGG | 0.442569 | 3_3:-55238979 | Msa0458950:three_prime_UTR |
| TTAGCATATGCTTCTAAGAA+TGG | 0.443157 | 3_3:+55239954 | None:intergenic |
| TCCCACACAGGTTTCAATGA+TGG | 0.445729 | 3_3:+55239696 | None:intergenic |
| GTGAAAATGCAACAGATTCT+CGG | 0.449271 | 3_3:+55239617 | None:intergenic |
| GGAAGACTTAGAGTCGAGTT+TGG | 0.454551 | 3_3:-55240002 | Msa0458950:CDS |
| TCAATTTCGTCCTTGAACTT+AGG | 0.455514 | 3_3:+55238926 | None:intergenic |
| TGGCGGTTTCACAATTGGAA+TGG | 0.467227 | 3_3:-55239802 | Msa0458950:CDS |
| TGCAACAGATTCTCGGTCAG+TGG | 0.476338 | 3_3:+55239624 | None:intergenic |
| CCAAGCATCTTGCATGGTGC+AGG | 0.480198 | 3_3:+55239055 | None:intergenic |
| AAGTTGCGTCTAATACCAAC+TGG | 0.480983 | 3_3:+55239388 | None:intergenic |
| CTTCGAGTGATGAAACCTTA+AGG | 0.484061 | 3_3:+55238901 | None:intergenic |
| GATTATGATACTTTACCTAA+AGG | 0.489847 | 3_3:-55239361 | Msa0458950:three_prime_UTR |
| CCAAGTAATGAAGAGAAGAA+AGG | 0.491172 | 3_3:+55239925 | None:intergenic |
| TGGTATTAGACGCAACTTGA+AGG | 0.491366 | 3_3:-55239383 | Msa0458950:three_prime_UTR |
| TACACTCCTTTGTACTACTC+TGG | 0.499837 | 3_3:-55238732 | None:intergenic |
| CTCGGTCAGTGGGACATTGT+GGG | 0.504074 | 3_3:+55239635 | None:intergenic |
| AGCATGGAATTGGAAGATAG+TGG | 0.504909 | 3_3:-55239163 | Msa0458950:three_prime_UTR |
| GCAATTGTTGAACTTGGAAG+AGG | 0.508018 | 3_3:-55239729 | Msa0458950:CDS |
| CAAGTAATGAAGAGAAGAAA+GGG | 0.508480 | 3_3:+55239926 | None:intergenic |
| CTTAGAGTCGAGTTTGGTGT+TGG | 0.525295 | 3_3:-55239996 | Msa0458950:CDS |
| TCTCGGTCAGTGGGACATTG+TGG | 0.526038 | 3_3:+55239634 | None:intergenic |
| CCTGCACCATGCAAGATGCT+TGG | 0.531684 | 3_3:-55239055 | Msa0458950:three_prime_UTR |
| ATTTCTAGCTTTAGGTTTAG+GGG | 0.543168 | 3_3:+55241282 | None:intergenic |
| ATGGTGACAAAATTTCTTTG+TGG | 0.543302 | 3_3:-55239822 | Msa0458950:CDS |
| GGAAGATAGTGGTGCAGTAA+CGG | 0.543611 | 3_3:-55239152 | Msa0458950:three_prime_UTR |
| CACAGAAATTGCAAAAGACT+TGG | 0.546007 | 3_3:-55239892 | Msa0458950:CDS |
| GACAGAGAAAGAATACAAGA+AGG | 0.550104 | 3_3:+55241222 | None:intergenic |
| AGAGTCGAGTTTGGTGTTGG+TGG | 0.551439 | 3_3:-55239993 | Msa0458950:CDS |
| TTGTCACCATGAATACCAAA+GGG | 0.551952 | 3_3:+55239835 | None:intergenic |
| GCGGTTTCACAATTGGAATG+GGG | 0.553602 | 3_3:-55239800 | Msa0458950:CDS |
| TGATGATCATGATCTGTCAA+TGG | 0.555180 | 3_3:-55238993 | Msa0458950:three_prime_UTR |
| GCCTTAAAACTTAACAGCAA+TGG | 0.564131 | 3_3:-55239430 | Msa0458950:three_prime_UTR |
| TTTGTCACCATGAATACCAA+AGG | 0.565547 | 3_3:+55239834 | None:intergenic |
| AACTTAACAATTTCATAGAG+TGG | 0.568497 | 3_3:+55239274 | None:intergenic |
| TCAGTGGGACATTGTGGGAA+AGG | 0.570113 | 3_3:+55239640 | None:intergenic |
| TTTACAAGTATACCTGCAAG+AGG | 0.571753 | 3_3:+55241054 | None:intergenic |
| AAGTGCTTGCAGGTTATGTG+TGG | 0.575180 | 3_3:-55239468 | Msa0458950:three_prime_UTR |
| AATCATGTATTGTTGATGAC+CGG | 0.576588 | 3_3:+55241145 | None:intergenic |
| CTAGTGAAACATGCTGGTGA+TGG | 0.577908 | 3_3:-55240023 | Msa0458950:CDS |
| CAAGAAGGAATAGACTTGGA+TGG | 0.586286 | 3_3:+55241237 | None:intergenic |
| GCGTCTAATACCAACTGGAA+TGG | 0.590884 | 3_3:+55239393 | None:intergenic |
| GCAACAGATTCTCGGTCAGT+GGG | 0.591813 | 3_3:+55239625 | None:intergenic |
| ATTCAAAGAAGCGGTCTCAA+AGG | 0.594281 | 3_3:-55241094 | Msa0458950:CDS |
| AATACAAGAAGGAATAGACT+TGG | 0.595657 | 3_3:+55241233 | None:intergenic |
| GTGACAAAATTTCTTTGTGG+CGG | 0.608273 | 3_3:-55239819 | Msa0458950:CDS |
| ATGAGAAAATACACGTATCG+AGG | 0.609004 | 3_3:+55239029 | None:intergenic |
| GTGGGAAAGAGAAAACAAGT+TGG | 0.609777 | 3_3:-55239679 | Msa0458950:CDS |
| CGGTTTCACAATTGGAATGG+GGG | 0.610007 | 3_3:-55239799 | Msa0458950:CDS |
| GGTAGACTAGTGAAACATGC+TGG | 0.615068 | 3_3:-55240029 | Msa0458950:CDS |
| TTGTCATGTATTCAAAGAAG+CGG | 0.616564 | 3_3:-55241103 | Msa0458950:CDS |
| GTTTGTGACATAATCAGCAG+TGG | 0.618396 | 3_3:+55239225 | None:intergenic |
| TGCTTGCAGGTTATGTGTGG+AGG | 0.634525 | 3_3:-55239465 | Msa0458950:three_prime_UTR |
| TCATGCATGCACCTTGAGTG+TGG | 0.639514 | 3_3:+55238867 | None:intergenic |
| GCTTCTTTGAATACATGACA+AGG | 0.645628 | 3_3:+55241105 | None:intergenic |
| TGAGAAAATACACGTATCGA+GGG | 0.645992 | 3_3:+55239030 | None:intergenic |
| TTGTAGGAGATCCACACTCA+AGG | 0.647524 | 3_3:-55238878 | Msa0458950:three_prime_UTR |
| GATCATGATCTGTCAATGGA+AGG | 0.648767 | 3_3:-55238989 | Msa0458950:three_prime_UTR |
| AGGGTGCCAAGCATCTTGCA+TGG | 0.649943 | 3_3:+55239049 | None:intergenic |
| CATGATCTGTCAATGGAAGG+AGG | 0.651977 | 3_3:-55238986 | Msa0458950:three_prime_UTR |
| ACAGTGTTGACCATTCCAGT+TGG | 0.658221 | 3_3:-55239403 | Msa0458950:three_prime_UTR |
| ACTTAGGCATAGCAGCAACA+GGG | 0.673752 | 3_3:+55238942 | None:intergenic |
| CTTCTTTGAATACATGACAA+GGG | 0.683868 | 3_3:+55241106 | None:intergenic |
| GCCATCATTGAAACCTGTGT+GGG | 0.693287 | 3_3:-55239697 | Msa0458950:CDS |
| AGCCATCATTGAAACCTGTG+TGG | 0.709141 | 3_3:-55239698 | Msa0458950:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAATAAAAATGAAAAAAT+AGG | - | chr3_3:55240552-55240571 | Msa0458950:intron | 10.0% |
| !! | TGAATAAAAATGAAAAAATA+GGG | - | chr3_3:55240553-55240572 | Msa0458950:intron | 10.0% |
| !! | TATCTTTATTCTATTTAAAA+TGG | + | chr3_3:55241286-55241305 | None:intergenic | 10.0% |
| !!! | ATTTTAAATAGAATAAAGAT+AGG | - | chr3_3:55241285-55241304 | Msa0458950:CDS | 10.0% |
| !! | AATAAATATCATGGTTAATT+CGG | + | chr3_3:55239192-55239211 | None:intergenic | 15.0% |
| !!! | TTAATTTTTTGTTACATTGT+TGG | + | chr3_3:55239224-55239243 | None:intergenic | 15.0% |
| !! | AATTGATAAAGGAAAAAAAT+TGG | - | chr3_3:55239366-55239385 | Msa0458950:three_prime_UTR | 15.0% |
| !! | GAAAACTAAAATAAACATAA+GGG | + | chr3_3:55239773-55239792 | None:intergenic | 15.0% |
| !! | TGAAAACTAAAATAAACATA+AGG | + | chr3_3:55239772-55239791 | None:intergenic | 15.0% |
| !!! | TTGAAACTTTTAAAACATAA+GGG | + | chr3_3:55239483-55239502 | None:intergenic | 15.0% |
| !! | TGAAAACTAAAATAAACATA+AGG | - | chr3_3:55239772-55239791 | Msa0458950:CDS | 15.0% |
| !! | GAAAACTAAAATAAACATAA+GGG | - | chr3_3:55239773-55239792 | Msa0458950:CDS | 15.0% |
| !! | CAATTCAAATGTTAAAATAA+AGG | + | chr3_3:55239812-55239831 | None:intergenic | 15.0% |
| !! | TGTCATTGAAATAAATATCA+TGG | + | chr3_3:55239201-55239220 | None:intergenic | 20.0% |
| !!! | ATTACAGAAAATGTTGTTTA+AGG | - | chr3_3:55239283-55239302 | Msa0458950:three_prime_UTR | 20.0% |
| !!! | TTACAGAAAATGTTGTTTAA+GGG | - | chr3_3:55239284-55239303 | Msa0458950:three_prime_UTR | 20.0% |
| !! | GTTACACTTTAAATTGATAA+AGG | - | chr3_3:55239355-55239374 | Msa0458950:three_prime_UTR | 20.0% |
| !!! | GTTTGTTACACTTTTATTTT+AGG | - | chr3_3:55239408-55239427 | Msa0458950:three_prime_UTR | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+TGG | - | chr3_3:55239456-55239475 | Msa0458950:three_prime_UTR | 20.0% |
| !!! | CTTGAAACTTTTAAAACATA+AGG | + | chr3_3:55239484-55239503 | None:intergenic | 20.0% |
| !!! | ATGTTTTAAAAGTTTCAAGT+TGG | - | chr3_3:55239485-55239504 | Msa0458950:three_prime_UTR | 20.0% |
| !!! | GTTTATTTTAGTTTTCAAGT+TGG | + | chr3_3:55239456-55239475 | None:intergenic | 20.0% |
| !!! | GTATTATTTTGATTCACAAA+GGG | + | chr3_3:55240465-55240484 | None:intergenic | 20.0% |
| !!! | AGTATTATTTTGATTCACAA+AGG | + | chr3_3:55240466-55240485 | None:intergenic | 20.0% |
| !!! | CAATATTGTTTTAAAGTAGA+GGG | - | chr3_3:55240498-55240517 | Msa0458950:intron | 20.0% |
| !! | ATTATGATACTTTACCTAAA+GGG | - | chr3_3:55240697-55240716 | Msa0458950:intron | 20.0% |
| !!! | CAGGAAAATATAATTTTTGA+AGG | - | chr3_3:55240957-55240976 | Msa0458950:intron | 20.0% |
| !! | TTTCTCATCATTTTCCATTA+TGG | - | chr3_3:55238738-55238757 | Msa0458950:three_prime_UTR | 25.0% |
| ! | CAACGTATGAAAATTATGAA+AGG | - | chr3_3:55239097-55239116 | Msa0458950:three_prime_UTR | 25.0% |
| ! | TCTGTAATAAAGATTGTTGT+TGG | + | chr3_3:55239271-55239290 | None:intergenic | 25.0% |
| ! | TCACTTAAATTTAAAGATCC+GGG | + | chr3_3:55239647-55239666 | None:intergenic | 25.0% |
| ! | GTCACTTAAATTTAAAGATC+CGG | + | chr3_3:55239648-55239667 | None:intergenic | 25.0% |
| ! | GGATCTTTAAATTTAAGTGA+CGG | - | chr3_3:55239647-55239666 | Msa0458950:three_prime_UTR | 25.0% |
| ! | TTGAAACTTGTAAAACGTAA+GGG | - | chr3_3:55239713-55239732 | Msa0458950:CDS | 25.0% |
| !!! | ATGTTTTAAAAGTTCCAAGT+TGG | + | chr3_3:55239740-55239759 | None:intergenic | 25.0% |
| !!! | TTGGAACTTTTAAAACATGA+AGG | - | chr3_3:55239742-55239761 | Msa0458950:CDS | 25.0% |
| !!! | ATAACTGCTTTCAGTTTTTT+GGG | + | chr3_3:55239907-55239926 | None:intergenic | 25.0% |
| !!! | AATAACTGCTTTCAGTTTTT+TGG | + | chr3_3:55239908-55239927 | None:intergenic | 25.0% |
| !!! | GCAATATTGTTTTAAAGTAG+AGG | - | chr3_3:55240497-55240516 | Msa0458950:intron | 25.0% |
| ! | GATTATGATACTTTACCTAA+AGG | - | chr3_3:55240696-55240715 | Msa0458950:intron | 25.0% |
| ! | AACTTAACAATTTCATAGAG+TGG | + | chr3_3:55240786-55240805 | None:intergenic | 25.0% |
| ! | TCATGATCATCAAGTTTATT+AGG | + | chr3_3:55241056-55241075 | None:intergenic | 25.0% |
| !! | ATTTCTAGCTTTAGGTTTAG+GGG | + | chr3_3:55238778-55238797 | None:intergenic | 30.0% |
| !! | CATTTCTAGCTTTAGGTTTA+GGG | + | chr3_3:55238779-55238798 | None:intergenic | 30.0% |
| !! | TCATTTCTAGCTTTAGGTTT+AGG | + | chr3_3:55238780-55238799 | None:intergenic | 30.0% |
| !! | CATCTTTCATTTCTAGCTTT+AGG | + | chr3_3:55238786-55238805 | None:intergenic | 30.0% |
| AATACAAGAAGGAATAGACT+TGG | + | chr3_3:55238827-55238846 | None:intergenic | 30.0% | |
| !! | GTCATTTTGTTCATGTATAC+CGG | - | chr3_3:55238893-55238912 | Msa0458950:three_prime_UTR | 30.0% |
| !! | AATCATGTATTGTTGATGAC+CGG | + | chr3_3:55238915-55238934 | None:intergenic | 30.0% |
| ACAATACATGATTCTGATTC+AGG | - | chr3_3:55238922-55238941 | Msa0458950:three_prime_UTR | 30.0% | |
| CTTCTTTGAATACATGACAA+GGG | + | chr3_3:55238954-55238973 | None:intergenic | 30.0% | |
| TTGTCATGTATTCAAAGAAG+CGG | - | chr3_3:55238954-55238973 | Msa0458950:three_prime_UTR | 30.0% | |
| GATTATTATTATCCTCTTGC+AGG | - | chr3_3:55238991-55239010 | Msa0458950:three_prime_UTR | 30.0% | |
| TTAAACTCAATATCATGTCG+CGG | + | chr3_3:55239549-55239568 | None:intergenic | 30.0% | |
| TTCTAACATGAGTAACGTTT+AGG | - | chr3_3:55239684-55239703 | Msa0458950:CDS | 30.0% | |
| !! | ACGTTTTACAAGTTTCAAGT+TGG | + | chr3_3:55239711-55239730 | None:intergenic | 30.0% |
| CTTGAAACTTGTAAAACGTA+AGG | - | chr3_3:55239712-55239731 | Msa0458950:CDS | 30.0% | |
| ! | TTAGCATATGCTTCTAAGAA+TGG | + | chr3_3:55240106-55240125 | None:intergenic | 30.0% |
| CAAGTAATGAAGAGAAGAAA+GGG | + | chr3_3:55240134-55240153 | None:intergenic | 30.0% | |
| ! | TAACTTTTATCCATAGGAGA+AGG | + | chr3_3:55240202-55240221 | None:intergenic | 30.0% |
| ! | AAAGGGTAACTTTTATCCAT+AGG | + | chr3_3:55240208-55240227 | None:intergenic | 30.0% |
| TATGGATAAAAGTTACCCTT+TGG | - | chr3_3:55240207-55240226 | Msa0458950:intron | 30.0% | |
| ATGGTGACAAAATTTCTTTG+TGG | - | chr3_3:55240235-55240254 | Msa0458950:intron | 30.0% | |
| !! | TTGCTCTGAAGATTTGTAAT+TGG | + | chr3_3:55240312-55240331 | None:intergenic | 30.0% |
| !! | ACCATTGCTGTTAAGTTTTA+AGG | + | chr3_3:55240631-55240650 | None:intergenic | 30.0% |
| !! | ACTTTACCTAAAGGGTATTA+TGG | - | chr3_3:55240705-55240724 | Msa0458950:intron | 30.0% |
| !! | CTTTACCTAAAGGGTATTAT+GGG | - | chr3_3:55240706-55240725 | Msa0458950:intron | 30.0% |
| CACAAACTCAATAAACTCTT+TGG | - | chr3_3:55240848-55240867 | Msa0458950:intron | 30.0% | |
| !!! | TCAAGAAGATAGTTTTAGCA+TGG | - | chr3_3:55240878-55240897 | Msa0458950:intron | 30.0% |
| !!! | AGATAGTTTTAGCATGGAAT+TGG | - | chr3_3:55240884-55240903 | Msa0458950:intron | 30.0% |
| GACAGAGAAAGAATACAAGA+AGG | + | chr3_3:55238838-55238857 | None:intergenic | 35.0% | |
| GCTTCTTTGAATACATGACA+AGG | + | chr3_3:55238955-55238974 | None:intergenic | 35.0% | |
| TTTACAAGTATACCTGCAAG+AGG | + | chr3_3:55239006-55239025 | None:intergenic | 35.0% | |
| AATAAAAAGAGCGGAAAGAC+GGG | + | chr3_3:55239073-55239092 | None:intergenic | 35.0% | |
| CAATAAAAAGAGCGGAAAGA+CGG | + | chr3_3:55239074-55239093 | None:intergenic | 35.0% | |
| CCAAGTAATGAAGAGAAGAA+AGG | + | chr3_3:55240135-55240154 | None:intergenic | 35.0% | |
| CCTTTCTTCTCTTCATTACT+TGG | - | chr3_3:55240132-55240151 | Msa0458950:intron | 35.0% | |
| CACAGAAATTGCAAAAGACT+TGG | - | chr3_3:55240165-55240184 | Msa0458950:intron | 35.0% | |
| AAGTTACCCTTTGGTATTCA+TGG | - | chr3_3:55240216-55240235 | Msa0458950:intron | 35.0% | |
| TTGTCACCATGAATACCAAA+GGG | + | chr3_3:55240225-55240244 | None:intergenic | 35.0% | |
| TTTGTCACCATGAATACCAA+AGG | + | chr3_3:55240226-55240245 | None:intergenic | 35.0% | |
| GTGACAAAATTTCTTTGTGG+CGG | - | chr3_3:55240238-55240257 | Msa0458950:intron | 35.0% | |
| TTCAGAGCAATTGTTGAACT+TGG | - | chr3_3:55240322-55240341 | Msa0458950:intron | 35.0% | |
| GTGAAAATGCAACAGATTCT+CGG | + | chr3_3:55240443-55240462 | None:intergenic | 35.0% | |
| GCCTTAAAACTTAACAGCAA+TGG | - | chr3_3:55240627-55240646 | Msa0458950:intron | 35.0% | |
| GAATTCCCATAATACCCTTT+AGG | + | chr3_3:55240714-55240733 | None:intergenic | 35.0% | |
| ! | TCTAAGTGAGTTGAGACATT+TGG | - | chr3_3:55240929-55240948 | Msa0458950:intron | 35.0% |
| ! | CTAAGTGAGTTGAGACATTT+GGG | - | chr3_3:55240930-55240949 | Msa0458950:intron | 35.0% |
| TGAGAAAATACACGTATCGA+GGG | + | chr3_3:55241030-55241049 | None:intergenic | 35.0% | |
| ATGAGAAAATACACGTATCG+AGG | + | chr3_3:55241031-55241050 | None:intergenic | 35.0% | |
| TGATGATCATGATCTGTCAA+TGG | - | chr3_3:55241064-55241083 | Msa0458950:intron | 35.0% | |
| TCAATTTCGTCCTTGAACTT+AGG | + | chr3_3:55241134-55241153 | None:intergenic | 35.0% | |
| TGCTTTCTGATACGCCATAA+TGG | + | chr3_3:55238755-55238774 | None:intergenic | 40.0% | |
| CAAGAAGGAATAGACTTGGA+TGG | + | chr3_3:55238823-55238842 | None:intergenic | 40.0% | |
| ATTCAAAGAAGCGGTCTCAA+AGG | - | chr3_3:55238963-55238982 | Msa0458950:three_prime_UTR | 40.0% | |
| CGTTGTCGCAATAAAAAGAG+CGG | + | chr3_3:55239082-55239101 | None:intergenic | 40.0% | |
| ! | TTCCAACGTGAGTAACGTTT+TGG | + | chr3_3:55239512-55239531 | None:intergenic | 40.0% |
| ! | AAGATCCGGGTTGACAATAT+GGG | + | chr3_3:55239634-55239653 | None:intergenic | 40.0% |
| ! | AAAGATCCGGGTTGACAATA+TGG | + | chr3_3:55239635-55239654 | None:intergenic | 40.0% |
| TAAAACGTAAGGGACCAACT+TGG | - | chr3_3:55239723-55239742 | Msa0458950:CDS | 40.0% | |
| !!! | CTGCTTTCAGTTTTTTGGGT+TGG | + | chr3_3:55239903-55239922 | None:intergenic | 40.0% |
| !! | GAAGTGAGATGTTGGTTTAG+TGG | + | chr3_3:55240000-55240019 | None:intergenic | 40.0% |
| ! | CATGTTTCACTAGTCTACCT+GGG | + | chr3_3:55240027-55240046 | None:intergenic | 40.0% |
| GCTTGATATTCCTTCTCCTA+TGG | - | chr3_3:55240189-55240208 | Msa0458950:intron | 40.0% | |
| ! | CATGCTATTTGTGACGCATT+TGG | - | chr3_3:55240286-55240305 | Msa0458950:intron | 40.0% |
| GCAATTGTTGAACTTGGAAG+AGG | - | chr3_3:55240328-55240347 | Msa0458950:intron | 40.0% | |
| ! | TTGTTTTCTCTTTCCCACAC+AGG | + | chr3_3:55240376-55240395 | None:intergenic | 40.0% |
| GTGGGAAAGAGAAAACAAGT+TGG | - | chr3_3:55240378-55240397 | Msa0458950:intron | 40.0% | |
| !!! | ACAACTTTTGAAGTGCTTGC+AGG | - | chr3_3:55240579-55240598 | Msa0458950:intron | 40.0% |
| AAGTTGCGTCTAATACCAAC+TGG | + | chr3_3:55240672-55240691 | None:intergenic | 40.0% | |
| TGGTATTAGACGCAACTTGA+AGG | - | chr3_3:55240674-55240693 | Msa0458950:intron | 40.0% | |
| GTTTGTGACATAATCAGCAG+TGG | + | chr3_3:55240835-55240854 | None:intergenic | 40.0% | |
| AGCATGGAATTGGAAGATAG+TGG | - | chr3_3:55240894-55240913 | Msa0458950:intron | 40.0% | |
| !! | GTTGAGACATTTGGGTTTTC+AGG | - | chr3_3:55240938-55240957 | Msa0458950:intron | 40.0% |
| GATCATGATCTGTCAATGGA+AGG | - | chr3_3:55241068-55241087 | Msa0458950:CDS | 40.0% | |
| AGGACGAAATTGAAGCCTTA+AGG | - | chr3_3:55241141-55241160 | Msa0458950:CDS | 40.0% | |
| CTTCGAGTGATGAAACCTTA+AGG | + | chr3_3:55241159-55241178 | None:intergenic | 40.0% | |
| GTTTCATCACTCGAAGTTGT+AGG | - | chr3_3:55241163-55241182 | Msa0458950:CDS | 40.0% | |
| GTCCAAAACGTTACTCACGT+TGG | - | chr3_3:55239507-55239526 | Msa0458950:three_prime_UTR | 45.0% | |
| CTCAATATCATGTCGCGGAA+GGG | + | chr3_3:55239544-55239563 | None:intergenic | 45.0% | |
| ACTCAATATCATGTCGCGGA+AGG | + | chr3_3:55239545-55239564 | None:intergenic | 45.0% | |
| CATCACCCATATTGTCAACC+CGG | - | chr3_3:55239626-55239645 | Msa0458950:three_prime_UTR | 45.0% | |
| TGGGAAACGAAGTGAGATGT+TGG | + | chr3_3:55240008-55240027 | None:intergenic | 45.0% | |
| AACATCTCACTTCGTTTCCC+AGG | - | chr3_3:55240007-55240026 | Msa0458950:CDS | 45.0% | |
| ! | GCATGTTTCACTAGTCTACC+TGG | + | chr3_3:55240028-55240047 | None:intergenic | 45.0% |
| GGTAGACTAGTGAAACATGC+TGG | - | chr3_3:55240028-55240047 | Msa0458950:CDS | 45.0% | |
| CTAGTGAAACATGCTGGTGA+TGG | - | chr3_3:55240034-55240053 | Msa0458950:intron | 45.0% | |
| GGAAGACTTAGAGTCGAGTT+TGG | - | chr3_3:55240055-55240074 | Msa0458950:intron | 45.0% | |
| !! | CTTAGAGTCGAGTTTGGTGT+TGG | - | chr3_3:55240061-55240080 | Msa0458950:intron | 45.0% |
| CTTTGTGGCGGTTTCACAAT+TGG | - | chr3_3:55240250-55240269 | Msa0458950:intron | 45.0% | |
| TGGCGGTTTCACAATTGGAA+TGG | - | chr3_3:55240255-55240274 | Msa0458950:intron | 45.0% | |
| GGCGGTTTCACAATTGGAAT+GGG | - | chr3_3:55240256-55240275 | Msa0458950:intron | 45.0% | |
| GCGGTTTCACAATTGGAATG+GGG | - | chr3_3:55240257-55240276 | Msa0458950:intron | 45.0% | |
| CGGTTTCACAATTGGAATGG+GGG | - | chr3_3:55240258-55240277 | Msa0458950:intron | 45.0% | |
| AGCCATCATTGAAACCTGTG+TGG | - | chr3_3:55240359-55240378 | Msa0458950:intron | 45.0% | |
| GCCATCATTGAAACCTGTGT+GGG | - | chr3_3:55240360-55240379 | Msa0458950:intron | 45.0% | |
| TCCCACACAGGTTTCAATGA+TGG | + | chr3_3:55240364-55240383 | None:intergenic | 45.0% | |
| AAGTGCTTGCAGGTTATGTG+TGG | - | chr3_3:55240589-55240608 | Msa0458950:intron | 45.0% | |
| !! | ACAGTGTTGACCATTCCAGT+TGG | - | chr3_3:55240654-55240673 | Msa0458950:intron | 45.0% |
| GCGTCTAATACCAACTGGAA+TGG | + | chr3_3:55240667-55240686 | None:intergenic | 45.0% | |
| ! | GGAAGATAGTGGTGCAGTAA+CGG | - | chr3_3:55240905-55240924 | Msa0458950:intron | 45.0% |
| CATGATCTGTCAATGGAAGG+AGG | - | chr3_3:55241071-55241090 | Msa0458950:CDS | 45.0% | |
| TGTCAATGGAAGGAGGAGTT+AGG | - | chr3_3:55241078-55241097 | Msa0458950:CDS | 45.0% | |
| ACTTAGGCATAGCAGCAACA+GGG | + | chr3_3:55241118-55241137 | None:intergenic | 45.0% | |
| AACTTAGGCATAGCAGCAAC+AGG | + | chr3_3:55241119-55241138 | None:intergenic | 45.0% | |
| TGCTGCTATGCCTAAGTTCA+AGG | - | chr3_3:55241121-55241140 | Msa0458950:CDS | 45.0% | |
| TTGTAGGAGATCCACACTCA+AGG | - | chr3_3:55241179-55241198 | Msa0458950:CDS | 45.0% | |
| AGAAGCGGTCTCAAAGGCTT+TGG | - | chr3_3:55238969-55238988 | Msa0458950:three_prime_UTR | 50.0% | |
| ! | CGGGTTGACAATATGGGTGA+TGG | + | chr3_3:55239628-55239647 | None:intergenic | 50.0% |
| !! | AGAGTCGAGTTTGGTGTTGG+TGG | - | chr3_3:55240064-55240083 | Msa0458950:intron | 50.0% |
| !! | GGTGTTGGTGGTGCAGAATA+TGG | - | chr3_3:55240076-55240095 | Msa0458950:intron | 50.0% |
| TCAGTGGGACATTGTGGGAA+AGG | + | chr3_3:55240420-55240439 | None:intergenic | 50.0% | |
| GCAACAGATTCTCGGTCAGT+GGG | + | chr3_3:55240435-55240454 | None:intergenic | 50.0% | |
| TGCAACAGATTCTCGGTCAG+TGG | + | chr3_3:55240436-55240455 | None:intergenic | 50.0% | |
| TGCTTGCAGGTTATGTGTGG+AGG | - | chr3_3:55240592-55240611 | Msa0458950:intron | 50.0% | |
| TCATGCATGCACCTTGAGTG+TGG | + | chr3_3:55241193-55241212 | None:intergenic | 50.0% | |
| CTCGGTCAGTGGGACATTGT+GGG | + | chr3_3:55240425-55240444 | None:intergenic | 55.0% | |
| TCTCGGTCAGTGGGACATTG+TGG | + | chr3_3:55240426-55240445 | None:intergenic | 55.0% | |
| CCAAGCATCTTGCATGGTGC+AGG | + | chr3_3:55241005-55241024 | None:intergenic | 55.0% | |
| CCTGCACCATGCAAGATGCT+TGG | - | chr3_3:55241002-55241021 | Msa0458950:intron | 55.0% | |
| ! | AGGGTGCCAAGCATCTTGCA+TGG | + | chr3_3:55241011-55241030 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 55238733 | 55241346 | 55238733 | ID=Msa0458950;Name=Msa0458950 |
| chr3_3 | mRNA | 55238733 | 55241346 | 55238733 | ID=Msa0458950-mRNA-1;Parent=Msa0458950;Name=Msa0458950-mRNA-1;_AED=0.33;_eAED=0.33;_QI=24|1|1|1|1|1|2|938|211 |
| chr3_3 | exon | 55238733 | 55240050 | 55238733 | ID=Msa0458950-mRNA-1:exon:10932;Parent=Msa0458950-mRNA-1 |
| chr3_3 | exon | 55241067 | 55241346 | 55241067 | ID=Msa0458950-mRNA-1:exon:10931;Parent=Msa0458950-mRNA-1 |
| chr3_3 | five_prime_UTR | 55241323 | 55241346 | 55241323 | ID=Msa0458950-mRNA-1:five_prime_utr;Parent=Msa0458950-mRNA-1 |
| chr3_3 | CDS | 55241067 | 55241322 | 55241067 | ID=Msa0458950-mRNA-1:cds;Parent=Msa0458950-mRNA-1 |
| chr3_3 | CDS | 55239671 | 55240050 | 55239671 | ID=Msa0458950-mRNA-1:cds;Parent=Msa0458950-mRNA-1 |
| chr3_3 | three_prime_UTR | 55238733 | 55239670 | 55238733 | ID=Msa0458950-mRNA-1:three_prime_utr;Parent=Msa0458950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
