Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0805820 | Msa0843780 | 0.831735 | 1.410178e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 60 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTACTTTGTCTAAATATTC+AGG | 0.203271 | 5_3:-22812775 | Msa0805820:CDS |
| AATTAAGGTCTCTGAAAGTT+TGG | 0.284932 | 5_3:+22812795 | None:intergenic |
| TATACTCTTTCCACTGGAAA+TGG | 0.289681 | 5_3:-22809429 | Msa0805820:three_prime_UTR |
| GTCGTCGTAGCGTGCGTTCA+TGG | 0.308557 | 5_3:-22812967 | Msa0805820:intron |
| AGTAGAGATATGGGATTTCT+TGG | 0.308881 | 5_3:-22813327 | Msa0805820:exon |
| ATATTTAGACAAAGTAATTA+AGG | 0.354347 | 5_3:+22812780 | None:intergenic |
| ATCGCTCTCGCCTTCTGCTT+TGG | 0.354959 | 5_3:-22813231 | Msa0805820:CDS |
| AAACGGTAAAATACTATTTA+CGG | 0.358389 | 5_3:+22809467 | None:intergenic |
| CTACTTCAATTAGTTGTTGA+TGG | 0.361427 | 5_3:-22809683 | Msa0805820:exon |
| AGCGGGATAGAGTAGAGATA+TGG | 0.365339 | 5_3:-22813337 | Msa0805820:exon |
| ATTCTTAATGCTGCACATAA+TGG | 0.381497 | 5_3:-22812942 | Msa0805820:CDS |
| GTATATTATGATTTCACAAC+TGG | 0.388265 | 5_3:+22809614 | None:intergenic |
| CGTTCAGTTTGTGGATGATA+AGG | 0.408843 | 5_3:-22810485 | Msa0805820:intron |
| GGAGATAACTCGAGGTCGTC+GGG | 0.416866 | 5_3:+22813288 | None:intergenic |
| ATTAAGGTCTCTGAAAGTTT+GGG | 0.424180 | 5_3:+22812796 | None:intergenic |
| AACTCGAGGTCGTCGGGGAT+GGG | 0.434019 | 5_3:+22813294 | None:intergenic |
| TAACTCGAGGTCGTCGGGGA+TGG | 0.443551 | 5_3:+22813293 | None:intergenic |
| CAATTAGTTGTTGATGGCAC+TGG | 0.443634 | 5_3:-22809677 | Msa0805820:exon |
| ATCCGCTGCCAAGGACTGAT+AGG | 0.444355 | 5_3:-22811824 | Msa0805820:CDS |
| ATGGCACTACCGATCCTTCT+CGG | 0.445701 | 5_3:-22812923 | Msa0805820:CDS |
| AACCTACACCGGCTTTAAAC+CGG | 0.446101 | 5_3:-22812612 | Msa0805820:intron |
| TTACTTTGTCTAAATATTCA+GGG | 0.448785 | 5_3:-22812774 | Msa0805820:CDS |
| ATACTCTTTCCACTGGAAAT+GGG | 0.452118 | 5_3:-22809428 | Msa0805820:three_prime_UTR |
| CCCGCTGCTTGATTCTGCTA+TGG | 0.469477 | 5_3:+22813354 | None:intergenic |
| CAACTATTTGTTACCCGAGA+AGG | 0.474408 | 5_3:+22812909 | None:intergenic |
| TTCCACTGGAAATGGGTATG+AGG | 0.477466 | 5_3:-22809421 | Msa0805820:three_prime_UTR |
| ATTATTTATACTCTTTCCAC+TGG | 0.482924 | 5_3:-22809435 | Msa0805820:three_prime_UTR |
| GCGGGATAGAGTAGAGATAT+GGG | 0.488043 | 5_3:-22813336 | Msa0805820:exon |
| TATGTTCGACGTTCAGTTTG+TGG | 0.493659 | 5_3:-22810494 | Msa0805820:CDS |
| TGGCACTACCGATCCTTCTC+GGG | 0.498527 | 5_3:-22812922 | Msa0805820:intron |
| AAGCAGAAGGCGAGAGCGAT+CGG | 0.498878 | 5_3:+22813234 | None:intergenic |
| AACAAGTTAACAAATGCAAA+AGG | 0.508215 | 5_3:-22813395 | None:intergenic |
| CTCGCCTTCTGCTTTGGTGT+AGG | 0.509998 | 5_3:-22813225 | Msa0805820:CDS |
| CTTGACTTCTTTGTACCATA+CGG | 0.516923 | 5_3:+22813098 | None:intergenic |
| TAGGTCATGTTACCTCCGTA+TGG | 0.521416 | 5_3:-22813113 | Msa0805820:CDS |
| TCGAGGTCGTCGGGGATGGG+AGG | 0.523662 | 5_3:+22813297 | None:intergenic |
| CTGATGAAGCGAATTTGAGC+GGG | 0.536765 | 5_3:+22813267 | None:intergenic |
| TAAGCTTACCGGTTTAAAGC+CGG | 0.550322 | 5_3:+22812604 | None:intergenic |
| AACCTATCAGTCCTTGGCAG+CGG | 0.563826 | 5_3:+22811822 | None:intergenic |
| GGGAGATAACTCGAGGTCGT+CGG | 0.564364 | 5_3:+22813287 | None:intergenic |
| CCATAGCAGAATCAAGCAGC+GGG | 0.572221 | 5_3:-22813354 | Msa0805820:five_prime_UTR |
| ATTTGTTACCCGAGAAGGAT+CGG | 0.572337 | 5_3:+22812914 | None:intergenic |
| ATGTCAAACCTATCAGTCCT+TGG | 0.572861 | 5_3:+22811816 | None:intergenic |
| GACTCGGACTCGAGATCTCA+AGG | 0.575497 | 5_3:-22812752 | Msa0805820:intron |
| GGTGTAGGTTTCTCGAATGT+AGG | 0.579764 | 5_3:+22812625 | None:intergenic |
| GTTGTTAGCCTCTCTATCGA+TGG | 0.586068 | 5_3:-22809557 | Msa0805820:three_prime_UTR |
| ATCACCTTCCATCGATAGAG+AGG | 0.600152 | 5_3:+22809549 | None:intergenic |
| CCTTAAAATCGTAAACGACA+TGG | 0.601425 | 5_3:+22813070 | None:intergenic |
| ACATCCTACACCAAAGCAGA+AGG | 0.604708 | 5_3:+22813221 | None:intergenic |
| TACCGGTTTAAAGCCGGTGT+AGG | 0.609631 | 5_3:+22812610 | None:intergenic |
| GACTTCTTTGTACCATACGG+AGG | 0.618984 | 5_3:+22813101 | None:intergenic |
| TTAGCCTCTCTATCGATGGA+AGG | 0.621180 | 5_3:-22809553 | Msa0805820:three_prime_UTR |
| TGTCTAAATATTCAGGGACT+CGG | 0.623538 | 5_3:-22812768 | Msa0805820:CDS |
| TCTGATGAAGCGAATTTGAG+CGG | 0.624893 | 5_3:+22813266 | None:intergenic |
| GCCATAGCAGAATCAAGCAG+CGG | 0.657789 | 5_3:-22813355 | Msa0805820:five_prime_UTR |
| AAATGCAAAAGGAGTAAACA+AGG | 0.660984 | 5_3:-22813384 | None:intergenic |
| TACATTCGAGAAACCTACAC+CGG | 0.663662 | 5_3:-22812623 | Msa0805820:CDS |
| ATCCTCATACCCATTTCCAG+TGG | 0.668627 | 5_3:+22809419 | None:intergenic |
| GAGATAACTCGAGGTCGTCG+GGG | 0.698069 | 5_3:+22813289 | None:intergenic |
| TTTGAGCGGGAGATAACTCG+AGG | 0.703118 | 5_3:+22813280 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATAATATAATTGTTG+TGG | - | chr5_3:22811080-22811099 | Msa0805820:intron | 10.0% |
| !!! | ATAGTAATTAAGTTTAATTT+TGG | + | chr5_3:22812437-22812456 | None:intergenic | 10.0% |
| !! | TAAATAATTTAGTTGAAAAA+CGG | + | chr5_3:22813295-22813314 | None:intergenic | 10.0% |
| !! | ATATTTAGACAAAGTAATTA+AGG | + | chr5_3:22809965-22809984 | None:intergenic | 15.0% |
| !! | ATTCAAATTACTAACTAATT+AGG | + | chr5_3:22810036-22810055 | None:intergenic | 15.0% |
| !!! | ACATACATTTTTATAGAATA+TGG | - | chr5_3:22810460-22810479 | Msa0805820:intron | 15.0% |
| !! | AGATATTATGTTAGAAAATA+CGG | + | chr5_3:22810674-22810693 | None:intergenic | 15.0% |
| !!! | TTGTAATTAAGTTCAATTTT+TGG | + | chr5_3:22811371-22811390 | None:intergenic | 15.0% |
| !! | TGTTTGTTTGTTTGTATATT+TGG | - | chr5_3:22809753-22809772 | Msa0805820:intron | 20.0% |
| !!! | TATCAATTGATAATAGAAAG+AGG | + | chr5_3:22809887-22809906 | None:intergenic | 20.0% |
| !! | ATTACTTTGTCTAAATATTC+AGG | - | chr5_3:22809967-22809986 | Msa0805820:intron | 20.0% |
| !! | TTACTTTGTCTAAATATTCA+GGG | - | chr5_3:22809968-22809987 | Msa0805820:intron | 20.0% |
| !! | AATAAAGTGAAGATGATAAT+TGG | - | chr5_3:22810228-22810247 | Msa0805820:intron | 20.0% |
| !! | CAAAAACATAATATCTTAAC+AGG | - | chr5_3:22810398-22810417 | Msa0805820:intron | 20.0% |
| !! | AAAAGTCTATATTAAATCAG+AGG | + | chr5_3:22810984-22811003 | None:intergenic | 20.0% |
| !!! | AATTTTAAGTAGTCTGTTTA+TGG | - | chr5_3:22811009-22811028 | Msa0805820:intron | 20.0% |
| !!! | ATTTTAAGTAGTCTGTTTAT+GGG | - | chr5_3:22811010-22811029 | Msa0805820:intron | 20.0% |
| !! | TATAAATTATAATGTGATGC+TGG | - | chr5_3:22811203-22811222 | Msa0805820:intron | 20.0% |
| !! | ATTACTGTTTCCTAATATAA+TGG | - | chr5_3:22811283-22811302 | Msa0805820:intron | 20.0% |
| !!! | GTTTTAAACTGACTTTAAAT+TGG | - | chr5_3:22811963-22811982 | Msa0805820:intron | 20.0% |
| !!! | TTAAATTGGTTTTAAAAGAG+TGG | - | chr5_3:22811977-22811996 | Msa0805820:intron | 20.0% |
| !! | TACATCATAAATCAATAACA+TGG | + | chr5_3:22812150-22812169 | None:intergenic | 20.0% |
| !!! | TCTGATAAGTTTTTTATGAA+AGG | - | chr5_3:22812549-22812568 | Msa0805820:intron | 20.0% |
| !! | TCAAATATGATAATCAAGAA+AGG | + | chr5_3:22812805-22812824 | None:intergenic | 20.0% |
| !! | AAACGGTAAAATACTATTTA+CGG | + | chr5_3:22813278-22813297 | None:intergenic | 20.0% |
| ! | GATAGATTATAATAGAACGA+TGG | - | chr5_3:22810293-22810312 | Msa0805820:intron | 25.0% |
| ! | TACTAAATATCATACTGCTA+AGG | - | chr5_3:22810320-22810339 | Msa0805820:intron | 25.0% |
| !!! | GGTGTTTTTGTTTCATATTT+CGG | - | chr5_3:22810341-22810360 | Msa0805820:intron | 25.0% |
| ! | TGTGTTAAAAGAATCACTAA+GGG | + | chr5_3:22810380-22810399 | None:intergenic | 25.0% |
| ! | TTGTGTTAAAAGAATCACTA+AGG | + | chr5_3:22810381-22810400 | None:intergenic | 25.0% |
| !! | ATCATGCAATAGAATTTTTC+AGG | - | chr5_3:22810529-22810548 | Msa0805820:intron | 25.0% |
| ! | TCAAATTGAAGTTGTAAATC+TGG | + | chr5_3:22810577-22810596 | None:intergenic | 25.0% |
| ! | AATGCAATGCATACAAAAAA+GGG | - | chr5_3:22810707-22810726 | Msa0805820:intron | 25.0% |
| !!! | CAAACCTTGTTATTCAAAAA+CGG | + | chr5_3:22810953-22810972 | None:intergenic | 25.0% |
| !! | CAATGTGTTATAACTTTTCA+AGG | - | chr5_3:22811136-22811155 | Msa0805820:intron | 25.0% |
| ! | ACAGTAATTAAGTTCAATTG+TGG | + | chr5_3:22811271-22811290 | None:intergenic | 25.0% |
| !! | TCTGATAAGTTTTTGATGAA+AGG | - | chr5_3:22811437-22811456 | Msa0805820:intron | 25.0% |
| !! | ATTGCATCTTATGCTTTTAT+AGG | - | chr5_3:22811543-22811562 | Msa0805820:intron | 25.0% |
| !!! | AATATAAACCGGTTTTAAAC+TGG | - | chr5_3:22811941-22811960 | Msa0805820:intron | 25.0% |
| !! | GTTTAAAACCAGTTTAAAAC+CGG | + | chr5_3:22811952-22811971 | None:intergenic | 25.0% |
| ! | ATTACTATTTCGTACTATGA+TGG | - | chr5_3:22812449-22812468 | Msa0805820:intron | 25.0% |
| ! | TTTATGAAAGGATTCTGATT+AGG | - | chr5_3:22812561-22812580 | Msa0805820:intron | 25.0% |
| ! | CAGAAAAGTTACTTCAAAAA+AGG | + | chr5_3:22812705-22812724 | None:intergenic | 25.0% |
| ! | AACATAAAGAATACTAGAGA+AGG | + | chr5_3:22812920-22812939 | None:intergenic | 25.0% |
| ! | AATGATTATAACTACGACAT+TGG | - | chr5_3:22812954-22812973 | Msa0805820:CDS | 25.0% |
| ! | GTATATTATGATTTCACAAC+TGG | + | chr5_3:22813131-22813150 | None:intergenic | 25.0% |
| !!! | GCAAACATGTTTTTTTACTA+TGG | - | chr5_3:22813228-22813247 | Msa0805820:CDS | 25.0% |
| ! | ATTATTTATACTCTTTCCAC+TGG | - | chr5_3:22813307-22813326 | Msa0805820:CDS | 25.0% |
| ! | TCTCATTCCTTTTTCCTTTT+AGG | - | chr5_3:22809610-22809629 | Msa0805820:three_prime_UTR | 30.0% |
| AACATGACCTAAAAGGAAAA+AGG | + | chr5_3:22809620-22809639 | None:intergenic | 30.0% | |
| ATTCTTAATGCTGCACATAA+TGG | - | chr5_3:22809800-22809819 | Msa0805820:intron | 30.0% | |
| ! | ATTAAGGTCTCTGAAAGTTT+GGG | + | chr5_3:22809949-22809968 | None:intergenic | 30.0% |
| ! | AATTAAGGTCTCTGAAAGTT+TGG | + | chr5_3:22809950-22809969 | None:intergenic | 30.0% |
| CTATTAATGTCAGAAAGTAG+TGG | - | chr5_3:22810268-22810287 | Msa0805820:intron | 30.0% | |
| TAAAAGAATCACTAAGGGTT+TGG | + | chr5_3:22810375-22810394 | None:intergenic | 30.0% | |
| ! | TTGAATCTTTTCCTTCTATG+TGG | - | chr5_3:22810593-22810612 | Msa0805820:intron | 30.0% |
| TCGGGATTTGTATAAATTCT+AGG | - | chr5_3:22810645-22810664 | Msa0805820:intron | 30.0% | |
| CGGGATTTGTATAAATTCTA+GGG | - | chr5_3:22810646-22810665 | Msa0805820:intron | 30.0% | |
| ! | TTTTGTATGCATTGCATTGT+CGG | + | chr5_3:22810705-22810724 | None:intergenic | 30.0% |
| CAATGCAATGCATACAAAAA+AGG | - | chr5_3:22810706-22810725 | Msa0805820:intron | 30.0% | |
| !! | CATTCCGTTTTTGAATAACA+AGG | - | chr5_3:22810946-22810965 | Msa0805820:intron | 30.0% |
| ! | ATTGTTGTGGTGATTTTTGA+AGG | - | chr5_3:22811093-22811112 | Msa0805820:intron | 30.0% |
| AACACATTGCAGTATCATAA+AGG | + | chr5_3:22811125-22811144 | None:intergenic | 30.0% | |
| TTCCTAATATAATGGTGCTT+TGG | - | chr5_3:22811291-22811310 | Msa0805820:intron | 30.0% | |
| TCCTAATATAATGGTGCTTT+GGG | - | chr5_3:22811292-22811311 | Msa0805820:intron | 30.0% | |
| ! | ATTTGATGAGATTTTACTCG+AGG | - | chr5_3:22811402-22811421 | Msa0805820:intron | 30.0% |
| ! | CATCTTATGCTTTTATAGGT+TGG | - | chr5_3:22811547-22811566 | Msa0805820:intron | 30.0% |
| ACTCGATGATTACATCAAAA+AGG | + | chr5_3:22811608-22811627 | None:intergenic | 30.0% | |
| TTTCTCATTCAATTTCCAGT+GGG | + | chr5_3:22811698-22811717 | None:intergenic | 30.0% | |
| ATTTCTCATTCAATTTCCAG+TGG | + | chr5_3:22811699-22811718 | None:intergenic | 30.0% | |
| ! | AGATCCGTGTTTTATGTATA+AGG | - | chr5_3:22811775-22811794 | Msa0805820:intron | 30.0% |
| CTCTCCTTATACATAAAACA+CGG | + | chr5_3:22811782-22811801 | None:intergenic | 30.0% | |
| ! | AAATAACACTACCTTCGTTT+TGG | - | chr5_3:22811809-22811828 | Msa0805820:CDS | 30.0% |
| !! | GGAATTATCAATTTTGAGTG+AGG | - | chr5_3:22811871-22811890 | Msa0805820:intron | 30.0% |
| ! | CAGTTTAAAACTGTATGAAG+TGG | - | chr5_3:22812002-22812021 | Msa0805820:intron | 30.0% |
| GAAGTGGTTGAGTTAAAATA+TGG | - | chr5_3:22812018-22812037 | Msa0805820:intron | 30.0% | |
| !!! | CTGAGTTTTAATTTTTCGCT+GGG | - | chr5_3:22812219-22812238 | Msa0805820:intron | 30.0% |
| !!! | TGAGTTTTAATTTTTCGCTG+GGG | - | chr5_3:22812220-22812239 | Msa0805820:intron | 30.0% |
| ! | AAGGATTCTGATTAGGATTT+TGG | - | chr5_3:22812568-22812587 | Msa0805820:intron | 30.0% |
| ! | TTGTTATGCTTTTACAGTGT+TGG | - | chr5_3:22812675-22812694 | Msa0805820:intron | 30.0% |
| ACTCAATGATTACGTTAGAA+AGG | + | chr5_3:22812736-22812755 | None:intergenic | 30.0% | |
| GTTAAAAAATGACGATTGCA+AGG | - | chr5_3:22812886-22812905 | Msa0805820:intron | 30.0% | |
| CTACTTCAATTAGTTGTTGA+TGG | - | chr5_3:22813059-22813078 | Msa0805820:intron | 30.0% | |
| AGTAGAGATATGGGATTTCT+TGG | - | chr5_3:22809415-22809434 | Msa0805820:three_prime_UTR | 35.0% | |
| CTTGACTTCTTTGTACCATA+CGG | + | chr5_3:22809647-22809666 | None:intergenic | 35.0% | |
| CCTTAAAATCGTAAACGACA+TGG | + | chr5_3:22809675-22809694 | None:intergenic | 35.0% | |
| !! | CCATGTCGTTTACGATTTTA+AGG | - | chr5_3:22809672-22809691 | Msa0805820:three_prime_UTR | 35.0% |
| CAGAGTTAGTTAGTTAGTAG+AGG | + | chr5_3:22809735-22809754 | None:intergenic | 35.0% | |
| TGTCTAAATATTCAGGGACT+CGG | - | chr5_3:22809974-22809993 | Msa0805820:intron | 35.0% | |
| !! | AATGCCTTTAAAACCCTGTA+GGG | + | chr5_3:22810090-22810109 | None:intergenic | 35.0% |
| AAGAGAGAGAATAAGCTTAC+CGG | + | chr5_3:22810152-22810171 | None:intergenic | 35.0% | |
| AGTATTATCGATCGTTACCA+TGG | - | chr5_3:22810183-22810202 | Msa0805820:intron | 35.0% | |
| GAAGTTGTAAATCTGGATAG+CGG | + | chr5_3:22810570-22810589 | None:intergenic | 35.0% | |
| !! | TCAGTATATTTGCTGACTCA+AGG | + | chr5_3:22810796-22810815 | None:intergenic | 35.0% |
| AAACAGAGAGACATTCAAAG+AGG | + | chr5_3:22810867-22810886 | None:intergenic | 35.0% | |
| CCTAATATAATGGTGCTTTG+GGG | - | chr5_3:22811293-22811312 | Msa0805820:intron | 35.0% | |
| TTGATGAAAGGATTCTGATC+AGG | - | chr5_3:22811449-22811468 | Msa0805820:intron | 35.0% | |
| TGATACGAATCAACATGTGA+AGG | + | chr5_3:22811492-22811511 | None:intergenic | 35.0% | |
| !!! | GGTTGGTAGTCTTTTTTTGA+AGG | - | chr5_3:22811564-22811583 | Msa0805820:intron | 35.0% |
| !! | ATCAATTTTGAGTGAGGAAG+AGG | - | chr5_3:22811877-22811896 | Msa0805820:intron | 35.0% |
| !! | TCAATTTTGAGTGAGGAAGA+GGG | - | chr5_3:22811878-22811897 | Msa0805820:intron | 35.0% |
| GAGTAACTCATAATGTTGAG+CGG | - | chr5_3:22811912-22811931 | Msa0805820:intron | 35.0% | |
| AGCGGCTCATAAATATAAAC+CGG | - | chr5_3:22811930-22811949 | Msa0805820:intron | 35.0% | |
| ATGCAGTTCAGTTAGTAGTT+TGG | - | chr5_3:22812045-22812064 | Msa0805820:intron | 35.0% | |
| !!! | GCTGAGTTTTAATTTTTCGC+TGG | - | chr5_3:22812218-22812237 | Msa0805820:intron | 35.0% |
| GTTTGTGGATGATAAGGTAA+TGG | - | chr5_3:22812263-22812282 | Msa0805820:intron | 35.0% | |
| ! | CATTGAGTTGTATCATACTG+TGG | - | chr5_3:22812364-22812383 | Msa0805820:intron | 35.0% |
| CACAAACATGTATCGCTTAT+AGG | + | chr5_3:22812398-22812417 | None:intergenic | 35.0% | |
| !! | TGATGATGCTTTGATTTTGC+AGG | - | chr5_3:22813035-22813054 | Msa0805820:intron | 35.0% |
| !! | GATGATGCTTTGATTTTGCA+GGG | - | chr5_3:22813036-22813055 | Msa0805820:intron | 35.0% |
| TCGAAAAAGTTATGTGGTCA+TGG | + | chr5_3:22813108-22813127 | None:intergenic | 35.0% | |
| AACTGGTCGAAAAAGTTATG+TGG | + | chr5_3:22813114-22813133 | None:intergenic | 35.0% | |
| TATACTCTTTCCACTGGAAA+TGG | - | chr5_3:22813313-22813332 | Msa0805820:CDS | 35.0% | |
| ATACTCTTTCCACTGGAAAT+GGG | - | chr5_3:22813314-22813333 | Msa0805820:CDS | 35.0% | |
| TCTGATGAAGCGAATTTGAG+CGG | + | chr5_3:22809479-22809498 | None:intergenic | 40.0% | |
| ! | ATTTGTTACCCGAGAAGGAT+CGG | + | chr5_3:22809831-22809850 | None:intergenic | 40.0% |
| ! | CAACTATTTGTTACCCGAGA+AGG | + | chr5_3:22809836-22809855 | None:intergenic | 40.0% |
| !! | ATGCCTTTAAAACCCTGTAG+GGG | + | chr5_3:22810089-22810108 | None:intergenic | 40.0% |
| !! | CAATGCCTTTAAAACCCTGT+AGG | + | chr5_3:22810091-22810110 | None:intergenic | 40.0% |
| !!! | CTACAGGGTTTTAAAGGCAT+TGG | - | chr5_3:22810089-22810108 | Msa0805820:intron | 40.0% |
| TACATTCGAGAAACCTACAC+CGG | - | chr5_3:22810119-22810138 | Msa0805820:intron | 40.0% | |
| !! | TAAGCTTACCGGTTTAAAGC+CGG | + | chr5_3:22810141-22810160 | None:intergenic | 40.0% |
| !!! | CTTTTGAGAGTGTTGTACCA+TGG | + | chr5_3:22810203-22810222 | None:intergenic | 40.0% |
| AATGCATCGTTCCACATAGA+AGG | + | chr5_3:22810607-22810626 | None:intergenic | 40.0% | |
| TGCCTGCAAGGAATTCTAAT+CGG | - | chr5_3:22810626-22810645 | Msa0805820:intron | 40.0% | |
| ATGTCAAACCTATCAGTCCT+TGG | + | chr5_3:22810929-22810948 | None:intergenic | 40.0% | |
| ! | ATTTTGAATAGCAGCACAGC+TGG | - | chr5_3:22811042-22811061 | Msa0805820:intron | 40.0% |
| ! | CCCCAAAGCACCATTATATT+AGG | + | chr5_3:22811296-22811315 | None:intergenic | 40.0% |
| ! | TGAGATTTTACTCGAGGACT+TGG | - | chr5_3:22811408-22811427 | Msa0805820:intron | 40.0% |
| CATTCAATTTCCAGTGGGAA+GGG | + | chr5_3:22811693-22811712 | None:intergenic | 40.0% | |
| TCATTCAATTTCCAGTGGGA+AGG | + | chr5_3:22811694-22811713 | None:intergenic | 40.0% | |
| ACATGCTCAAACCAAAACGA+AGG | + | chr5_3:22811823-22811842 | None:intergenic | 40.0% | |
| ! | TTGGTTTGAGCATGTGTTAC+TGG | - | chr5_3:22811828-22811847 | Msa0805820:CDS | 40.0% |
| TATGTTCGACGTTCAGTTTG+TGG | - | chr5_3:22812248-22812267 | Msa0805820:intron | 40.0% | |
| CGTTCAGTTTGTGGATGATA+AGG | - | chr5_3:22812257-22812276 | Msa0805820:intron | 40.0% | |
| TGATTGAGACACACTAAACC+TGG | + | chr5_3:22812480-22812499 | None:intergenic | 40.0% | |
| !! | CAATTAGTTGTTGATGGCAC+TGG | - | chr5_3:22813065-22813084 | Msa0805820:intron | 40.0% |
| AGCGGGATAGAGTAGAGATA+TGG | - | chr5_3:22809405-22809424 | Msa0805820:three_prime_UTR | 45.0% | |
| GCGGGATAGAGTAGAGATAT+GGG | - | chr5_3:22809406-22809425 | Msa0805820:three_prime_UTR | 45.0% | |
| CTGATGAAGCGAATTTGAGC+GGG | + | chr5_3:22809478-22809497 | None:intergenic | 45.0% | |
| ACATCCTACACCAAAGCAGA+AGG | + | chr5_3:22809524-22809543 | None:intergenic | 45.0% | |
| CGGAGGTAACATGACCTAAA+AGG | + | chr5_3:22809627-22809646 | None:intergenic | 45.0% | |
| TAGGTCATGTTACCTCCGTA+TGG | - | chr5_3:22809629-22809648 | Msa0805820:three_prime_UTR | 45.0% | |
| GACTTCTTTGTACCATACGG+AGG | + | chr5_3:22809644-22809663 | None:intergenic | 45.0% | |
| !! | TGCCTTTAAAACCCTGTAGG+GGG | + | chr5_3:22810088-22810107 | None:intergenic | 45.0% |
| GGTGTAGGTTTCTCGAATGT+AGG | + | chr5_3:22810120-22810139 | None:intergenic | 45.0% | |
| !! | AACCTACACCGGCTTTAAAC+CGG | - | chr5_3:22810130-22810149 | Msa0805820:intron | 45.0% |
| GAATCACTAAGGGTTTGGAG+TGG | + | chr5_3:22810370-22810389 | None:intergenic | 45.0% | |
| GCCTGCAAGGAATTCTAATC+GGG | - | chr5_3:22810627-22810646 | Msa0805820:intron | 45.0% | |
| TCCCGATTAGAATTCCTTGC+AGG | + | chr5_3:22810631-22810650 | None:intergenic | 45.0% | |
| CAGAGAGACATTCAAAGAGG+AGG | + | chr5_3:22810864-22810883 | None:intergenic | 45.0% | |
| !! | TGAGTTTTAATCCGCTGCCA+AGG | - | chr5_3:22810909-22810928 | Msa0805820:intron | 45.0% |
| ! | ATTGATGATTCCCTTCCCAC+TGG | - | chr5_3:22811680-22811699 | Msa0805820:intron | 45.0% |
| ! | TTGAGCATGTGTTACTGGTG+TGG | - | chr5_3:22811833-22811852 | Msa0805820:CDS | 45.0% |
| ! | TTACTGGTGTGGTGTTAGAG+TGG | - | chr5_3:22811844-22811863 | Msa0805820:intron | 45.0% |
| ! | TACTGGTGTGGTGTTAGAGT+GGG | - | chr5_3:22811845-22811864 | Msa0805820:intron | 45.0% |
| CGTACTATGATGGTACTTCC+AGG | - | chr5_3:22812459-22812478 | Msa0805820:intron | 45.0% | |
| ! | GTTGTTAGCCTCTCTATCGA+TGG | - | chr5_3:22813185-22813204 | Msa0805820:intron | 45.0% |
| TTAGCCTCTCTATCGATGGA+AGG | - | chr5_3:22813189-22813208 | Msa0805820:intron | 45.0% | |
| ATCACCTTCCATCGATAGAG+AGG | + | chr5_3:22813196-22813215 | None:intergenic | 45.0% | |
| TTCCACTGGAAATGGGTATG+AGG | - | chr5_3:22813321-22813340 | Msa0805820:CDS | 45.0% | |
| ATCCTCATACCCATTTCCAG+TGG | + | chr5_3:22813326-22813345 | None:intergenic | 45.0% | |
| GCCATAGCAGAATCAAGCAG+CGG | - | chr5_3:22809387-22809406 | Msa0805820:three_prime_UTR | 50.0% | |
| CCATAGCAGAATCAAGCAGC+GGG | - | chr5_3:22809388-22809407 | Msa0805820:three_prime_UTR | 50.0% | |
| TTTGAGCGGGAGATAACTCG+AGG | + | chr5_3:22809465-22809484 | None:intergenic | 50.0% | |
| ATGGCACTACCGATCCTTCT+CGG | - | chr5_3:22809819-22809838 | Msa0805820:intron | 50.0% | |
| !! | CCTTTAAAACCCTGTAGGGG+GGG | + | chr5_3:22810086-22810105 | None:intergenic | 50.0% |
| !! | GCCTTTAAAACCCTGTAGGG+GGG | + | chr5_3:22810087-22810106 | None:intergenic | 50.0% |
| !! | TACCGGTTTAAAGCCGGTGT+AGG | + | chr5_3:22810135-22810154 | None:intergenic | 50.0% |
| ! | TCACTAAGGGTTTGGAGTGG+AGG | + | chr5_3:22810367-22810386 | None:intergenic | 50.0% |
| AACCTATCAGTCCTTGGCAG+CGG | + | chr5_3:22810923-22810942 | None:intergenic | 50.0% | |
| ! | GTGTGGTGTTAGAGTGGGAA+GGG | - | chr5_3:22811850-22811869 | Msa0805820:intron | 50.0% |
| TTTGAGTGAGGAAGAGGGAG+AGG | - | chr5_3:22811883-22811902 | Msa0805820:intron | 50.0% | |
| TTGAGTGAGGAAGAGGGAGA+GGG | - | chr5_3:22811884-22811903 | Msa0805820:intron | 50.0% | |
| CACATAGCGTCAACAGCTAG+GGG | + | chr5_3:22812096-22812115 | None:intergenic | 50.0% | |
| CCACATAGCGTCAACAGCTA+GGG | + | chr5_3:22812097-22812116 | None:intergenic | 50.0% | |
| ACCACATAGCGTCAACAGCT+AGG | + | chr5_3:22812098-22812117 | None:intergenic | 50.0% | |
| CCCGCTGCTTGATTCTGCTA+TGG | + | chr5_3:22809391-22809410 | None:intergenic | 55.0% | |
| GAGATAACTCGAGGTCGTCG+GGG | + | chr5_3:22809456-22809475 | None:intergenic | 55.0% | |
| GGAGATAACTCGAGGTCGTC+GGG | + | chr5_3:22809457-22809476 | None:intergenic | 55.0% | |
| GGGAGATAACTCGAGGTCGT+CGG | + | chr5_3:22809458-22809477 | None:intergenic | 55.0% | |
| AAGCAGAAGGCGAGAGCGAT+CGG | + | chr5_3:22809511-22809530 | None:intergenic | 55.0% | |
| ATCGCTCTCGCCTTCTGCTT+TGG | - | chr5_3:22809511-22809530 | Msa0805820:three_prime_UTR | 55.0% | |
| ! | CTCGCCTTCTGCTTTGGTGT+AGG | - | chr5_3:22809517-22809536 | Msa0805820:three_prime_UTR | 55.0% |
| TGGCACTACCGATCCTTCTC+GGG | - | chr5_3:22809820-22809839 | Msa0805820:intron | 55.0% | |
| GACTCGGACTCGAGATCTCA+AGG | - | chr5_3:22809990-22810009 | Msa0805820:intron | 55.0% | |
| ! | ACTGTTTTCACCCCCCCTAC+AGG | - | chr5_3:22810073-22810092 | Msa0805820:intron | 55.0% |
| ! | CTGTTTTCACCCCCCCTACA+GGG | - | chr5_3:22810074-22810093 | Msa0805820:intron | 55.0% |
| !! | CCCCCCCTACAGGGTTTTAA+AGG | - | chr5_3:22810083-22810102 | Msa0805820:intron | 55.0% |
| GGAACGATGCATTGCCTGCA+AGG | - | chr5_3:22810614-22810633 | Msa0805820:intron | 55.0% | |
| ATCCGCTGCCAAGGACTGAT+AGG | - | chr5_3:22810918-22810937 | Msa0805820:intron | 55.0% | |
| GAATAGCAGCACAGCTGGCT+AGG | - | chr5_3:22811047-22811066 | Msa0805820:intron | 55.0% | |
| ! | GGTGTGGTGTTAGAGTGGGA+AGG | - | chr5_3:22811849-22811868 | Msa0805820:intron | 55.0% |
| TGAGTGAGGAAGAGGGAGAG+GGG | - | chr5_3:22811885-22811904 | Msa0805820:intron | 55.0% | |
| CCCTAGCTGTTGACGCTATG+TGG | - | chr5_3:22812094-22812113 | Msa0805820:intron | 55.0% | |
| AACTCGAGGTCGTCGGGGAT+GGG | + | chr5_3:22809451-22809470 | None:intergenic | 60.0% | |
| TAACTCGAGGTCGTCGGGGA+TGG | + | chr5_3:22809452-22809471 | None:intergenic | 60.0% | |
| GTCGTCGTAGCGTGCGTTCA+TGG | - | chr5_3:22809775-22809794 | Msa0805820:intron | 60.0% | |
| GAGTGAGGAAGAGGGAGAGG+GGG | - | chr5_3:22811886-22811905 | Msa0805820:intron | 60.0% | |
| TCGAGGTCGTCGGGGATGGG+AGG | + | chr5_3:22809448-22809467 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 22809362 | 22813402 | 22809362 | ID=Msa0805820;Name=Msa0805820 |
| chr5_3 | mRNA | 22809362 | 22813402 | 22809362 | ID=Msa0805820-mRNA-1;Parent=Msa0805820;Name=Msa0805820-mRNA-1;_AED=0.26;_eAED=0.26;_QI=62|1|1|1|1|1|8|331|167 |
| chr5_3 | exon | 22809362 | 22809707 | 22809362 | ID=Msa0805820-mRNA-1:exon:9114;Parent=Msa0805820-mRNA-1 |
| chr5_3 | exon | 22810486 | 22810545 | 22810486 | ID=Msa0805820-mRNA-1:exon:9113;Parent=Msa0805820-mRNA-1 |
| chr5_3 | exon | 22811797 | 22811856 | 22811797 | ID=Msa0805820-mRNA-1:exon:9112;Parent=Msa0805820-mRNA-1 |
| chr5_3 | exon | 22812613 | 22812669 | 22812613 | ID=Msa0805820-mRNA-1:exon:9111;Parent=Msa0805820-mRNA-1 |
| chr5_3 | exon | 22812753 | 22812827 | 22812753 | ID=Msa0805820-mRNA-1:exon:9110;Parent=Msa0805820-mRNA-1 |
| chr5_3 | exon | 22812923 | 22812979 | 22812923 | ID=Msa0805820-mRNA-1:exon:9109;Parent=Msa0805820-mRNA-1 |
| chr5_3 | exon | 22813071 | 22813132 | 22813071 | ID=Msa0805820-mRNA-1:exon:9108;Parent=Msa0805820-mRNA-1 |
| chr5_3 | exon | 22813223 | 22813402 | 22813223 | ID=Msa0805820-mRNA-1:exon:9107;Parent=Msa0805820-mRNA-1 |
| chr5_3 | five_prime_UTR | 22813341 | 22813402 | 22813341 | ID=Msa0805820-mRNA-1:five_prime_utr;Parent=Msa0805820-mRNA-1 |
| chr5_3 | CDS | 22813223 | 22813340 | 22813223 | ID=Msa0805820-mRNA-1:cds;Parent=Msa0805820-mRNA-1 |
| chr5_3 | CDS | 22813071 | 22813132 | 22813071 | ID=Msa0805820-mRNA-1:cds;Parent=Msa0805820-mRNA-1 |
| chr5_3 | CDS | 22812923 | 22812979 | 22812923 | ID=Msa0805820-mRNA-1:cds;Parent=Msa0805820-mRNA-1 |
| chr5_3 | CDS | 22812753 | 22812827 | 22812753 | ID=Msa0805820-mRNA-1:cds;Parent=Msa0805820-mRNA-1 |
| chr5_3 | CDS | 22812613 | 22812669 | 22812613 | ID=Msa0805820-mRNA-1:cds;Parent=Msa0805820-mRNA-1 |
| chr5_3 | CDS | 22811797 | 22811856 | 22811797 | ID=Msa0805820-mRNA-1:cds;Parent=Msa0805820-mRNA-1 |
| chr5_3 | CDS | 22810486 | 22810545 | 22810486 | ID=Msa0805820-mRNA-1:cds;Parent=Msa0805820-mRNA-1 |
| chr5_3 | CDS | 22809693 | 22809707 | 22809693 | ID=Msa0805820-mRNA-1:cds;Parent=Msa0805820-mRNA-1 |
| chr5_3 | three_prime_UTR | 22809362 | 22809692 | 22809362 | ID=Msa0805820-mRNA-1:three_prime_utr;Parent=Msa0805820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
