AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0843780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 61 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGGATTCTGATTAGGATTT+TGG 0.154428 5_4:-21636311 Msa0843780:three_prime_UTR
ATTACTTTGTCTAAATATTC+AGG 0.203271 5_4:-21639352 Msa0843780:CDS
CTCGAGGTCGTCGGGGATTG+GGG 0.228861 5_4:+21639937 None:intergenic
ATAGTAATTAAGTTTAATTT+TGG 0.250414 5_4:+21636445 None:intergenic
CACAAACATGTATCGCTTAT+AGG 0.264997 5_4:+21636484 None:intergenic
ACTCGAGGTCGTCGGGGATT+GGG 0.272803 5_4:+21639936 None:intergenic
AATTAAGGTCTCTGAAAGTT+TGG 0.284932 5_4:+21639372 None:intergenic
GTCGTCGTAGCGTGCGTTCA+TGG 0.308557 5_4:-21639545 Msa0843780:intron
AGTAGAGATATGGGATTTCT+TGG 0.308881 5_4:-21639968 Msa0843780:exon
TTTATGAAAGGATTCTGATT+AGG 0.343615 5_4:-21636318 Msa0843780:three_prime_UTR
ATATTTAGACAAAGTAATTA+AGG 0.354347 5_4:+21639357 None:intergenic
ATCGCTCTCGCCTTCTGCTT+TGG 0.354959 5_4:-21639872 Msa0843780:CDS
CGTACTATGATGGTACTTCC+AGG 0.363900 5_4:-21636420 Msa0843780:three_prime_UTR
AGCGGGATAGAGTAGAGATA+TGG 0.365339 5_4:-21639978 Msa0843780:exon
AACTCGAGGTCGTCGGGGAT+TGG 0.372428 5_4:+21639935 None:intergenic
ATTCTTAATGCTGCACATAA+TGG 0.381497 5_4:-21639520 Msa0843780:CDS
CGTTCAGTTTGTGGATGATA+AGG 0.408843 5_4:-21636622 Msa0843780:CDS
GGAGATAACTCGAGGTCGTC+GGG 0.416866 5_4:+21639929 None:intergenic
ATTACTATTTCGTACTATGA+TGG 0.420532 5_4:-21636430 Msa0843780:three_prime_UTR
ATTAAGGTCTCTGAAAGTTT+GGG 0.424180 5_4:+21639373 None:intergenic
ATCCGCTGCCAAGGACTGAT+AGG 0.444355 5_4:-21637960 Msa0843780:CDS
TCGAGGTCGTCGGGGATTGG+GGG 0.444858 5_4:+21639938 None:intergenic
ATGGCACTACCGATCCTTCT+CGG 0.445701 5_4:-21639501 Msa0843780:CDS
AACCTACACCGGCTTTAAAC+CGG 0.447734 5_4:-21639190 Msa0843780:intron
TTACTTTGTCTAAATATTCA+GGG 0.448785 5_4:-21639351 Msa0843780:CDS
CCCGCTGCTTGATTCTGCTA+TGG 0.469477 5_4:+21639995 None:intergenic
TCAAATATGATAATCAAGAA+AGG 0.474202 5_4:+21636077 None:intergenic
GTTTGTGGATGATAAGGTAA+TGG 0.481823 5_4:-21636616 Msa0843780:CDS
GCGGGATAGAGTAGAGATAT+GGG 0.488043 5_4:-21639977 Msa0843780:exon
ACTCAATGATTACGTTAGAA+AGG 0.491739 5_4:+21636146 None:intergenic
TATGTTCGACGTTCAGTTTG+TGG 0.493659 5_4:-21636631 Msa0843780:CDS
ACATTATTTGTTACCCGAGA+AGG 0.497121 5_4:+21639487 None:intergenic
TGGCACTACCGATCCTTCTC+GGG 0.498527 5_4:-21639500 Msa0843780:intron
AAGCAGAAGGCGAGAGCGAT+CGG 0.498878 5_4:+21639875 None:intergenic
AACAAGTTAACAAATGCAAA+AGG 0.508215 5_4:-21640036 None:intergenic
CTCGCCTTCTGCTTTGGTGT+AGG 0.509998 5_4:-21639866 Msa0843780:CDS
CTTGACTTCTTTGTACCATA+CGG 0.516923 5_4:+21639679 None:intergenic
TAGGTCATGTTACCTCCGTA+TGG 0.521416 5_4:-21639694 Msa0843780:CDS
CGAGGTCGTCGGGGATTGGG+GGG 0.522647 5_4:+21639939 None:intergenic
CTGATGAAGCGAATTTGAGC+GGG 0.536765 5_4:+21639908 None:intergenic
AACCTATCAGTCCTTGGCAG+CGG 0.563826 5_4:+21637958 None:intergenic
GGGAGATAACTCGAGGTCGT+CGG 0.564364 5_4:+21639928 None:intergenic
CCATAGCAGAATCAAGCAGC+GGG 0.572221 5_4:-21639995 Msa0843780:five_prime_UTR
ATGTCAAACCTATCAGTCCT+TGG 0.572861 5_4:+21637952 None:intergenic
GACTCGGACTCGAGATCTCA+AGG 0.575497 5_4:-21639329 Msa0843780:intron
TAAGCTGACCGGTTTAAAGC+CGG 0.575697 5_4:+21639182 None:intergenic
GGTGTAGGTTTCTCGAATGT+AGG 0.579764 5_4:+21639203 None:intergenic
TGATTGAGACACACTAAACC+TGG 0.583453 5_4:+21636402 None:intergenic
ATTTGTTACCCGAGAAGGAT+CGG 0.588538 5_4:+21639492 None:intergenic
CCTTAAAATCGTAAACGACA+TGG 0.601425 5_4:+21639651 None:intergenic
GACCGGTTTAAAGCCGGTGT+AGG 0.604444 5_4:+21639188 None:intergenic
GACTTCTTTGTACCATACGG+AGG 0.618984 5_4:+21639682 None:intergenic
TGTCTAAATATTCAGGGACT+CGG 0.623538 5_4:-21639345 Msa0843780:CDS
TCTGATGAAGCGAATTTGAG+CGG 0.624893 5_4:+21639907 None:intergenic
ACATCCTACACCAAAGCAGA+AGG 0.627951 5_4:+21639862 None:intergenic
GCCATAGCAGAATCAAGCAG+CGG 0.657789 5_4:-21639996 Msa0843780:five_prime_UTR
AAATGCAAAAGGAGTAAACA+AGG 0.660984 5_4:-21640025 None:intergenic
TACATTCGAGAAACCTACAC+CGG 0.663662 5_4:-21639201 Msa0843780:CDS
CATTGAGTTGTATCATACTG+TGG 0.685857 5_4:-21636515 Msa0843780:three_prime_UTR
GAGATAACTCGAGGTCGTCG+GGG 0.698069 5_4:+21639930 None:intergenic
TTTGAGCGGGAGATAACTCG+AGG 0.703118 5_4:+21639921 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATAATATAATTGTTG+TGG - chr5_4:21638234-21638253 Msa0843780:intron 10.0%
!!! ATAGTAATTAAGTTTAATTT+TGG + chr5_4:21639590-21639609 None:intergenic 10.0%
!! ATATTTAGACAAAGTAATTA+AGG + chr5_4:21636678-21636697 None:intergenic 15.0%
!! ATTCAAATTACTAACTAATT+AGG + chr5_4:21636745-21636764 None:intergenic 15.0%
!! AAATTATTAAACATACATTC+AGG - chr5_4:21637178-21637197 Msa0843780:intron 15.0%
!! AATTATTAAACATACATTCA+GGG - chr5_4:21637179-21637198 Msa0843780:intron 15.0%
!!! TTGTAATTAAGTTCAATTTT+TGG + chr5_4:21638524-21638543 None:intergenic 15.0%
!! AAAAAAGAATGAAAATGGAT+TGG + chr5_4:21636433-21636452 None:intergenic 20.0%
!! TAGAGAAAAAAGAATGAAAA+TGG + chr5_4:21636438-21636457 None:intergenic 20.0%
!!! ATATCAATTGATGATACAAA+GGG + chr5_4:21636593-21636612 None:intergenic 20.0%
!!! AATATCAATTGATGATACAA+AGG + chr5_4:21636594-21636613 None:intergenic 20.0%
!! ATTACTTTGTCTAAATATTC+AGG - chr5_4:21636680-21636699 Msa0843780:intron 20.0%
!! TTACTTTGTCTAAATATTCA+GGG - chr5_4:21636681-21636700 Msa0843780:intron 20.0%
!! ATTATTAAACATACATTCAG+GGG - chr5_4:21637180-21637199 Msa0843780:intron 20.0%
!! ATAGAGAAAAGACTAATAAA+TGG - chr5_4:21637435-21637454 Msa0843780:intron 20.0%
!!! TCAAATTGAAGTTTAAAATC+TGG + chr5_4:21637700-21637719 None:intergenic 20.0%
!! AAAAGTCTATATTAAATCAG+AGG + chr5_4:21638138-21638157 None:intergenic 20.0%
!!! AATTTTAAGTAGTCTGTTTA+TGG - chr5_4:21638163-21638182 Msa0843780:intron 20.0%
!!! ATTTTAAGTAGTCTGTTTAT+GGG - chr5_4:21638164-21638183 Msa0843780:intron 20.0%
!! TATAAATTATAATGTGATGC+TGG - chr5_4:21638357-21638376 Msa0843780:intron 20.0%
!! ATTACTGTTTCCTAATATAA+TGG - chr5_4:21638436-21638455 Msa0843780:intron 20.0%
!!! GTTTTAAACTGACTTTAAAT+TGG - chr5_4:21639116-21639135 Msa0843780:intron 20.0%
!!! TTAAATTGGTTTTAAAAGAG+TGG - chr5_4:21639130-21639149 Msa0843780:intron 20.0%
!! TACATCATAAATCAATAACA+TGG + chr5_4:21639303-21639322 None:intergenic 20.0%
!!! TCTGATAAGTTTTTTATGAA+AGG - chr5_4:21639702-21639721 Msa0843780:intron 20.0%
!! TCAAATATGATAATCAAGAA+AGG + chr5_4:21639958-21639977 None:intergenic 20.0%
! ACACTGTTTGTTTGTATATT+TGG - chr5_4:21636465-21636484 Msa0843780:three_prime_UTR 25.0%
!! TATCAATTGATGATACAAAG+GGG + chr5_4:21636592-21636611 None:intergenic 25.0%
! TACTAAATAACATACTGCTA+GGG - chr5_4:21637065-21637084 Msa0843780:intron 25.0%
!!! GGTTTAATTGTTTCTCTTTT+CGG - chr5_4:21637086-21637105 Msa0843780:intron 25.0%
! AGACTTAAGAGAATCAATAA+GGG + chr5_4:21637115-21637134 None:intergenic 25.0%
! AAGACTTAAGAGAATCAATA+AGG + chr5_4:21637116-21637135 None:intergenic 25.0%
!!! CATTTTAGTGTTAAACAATG+AGG + chr5_4:21637302-21637321 None:intergenic 25.0%
! GTACATAAGTCATATTATCA+TGG - chr5_4:21637483-21637502 Msa0843780:intron 25.0%
! ATGTTCTTTATCAACTAAGT+GGG - chr5_4:21637509-21637528 Msa0843780:intron 25.0%
!! CTTCTTTAAAAATGTATGCA+GGG + chr5_4:21637582-21637601 None:intergenic 25.0%
!! TCTTCTTTAAAAATGTATGC+AGG + chr5_4:21637583-21637602 None:intergenic 25.0%
!! TTTGAATCTTTTTCTCTATG+TGG - chr5_4:21637715-21637734 Msa0843780:intron 25.0%
!!! CAAACCTTGTTATTCAAAAA+CGG + chr5_4:21638107-21638126 None:intergenic 25.0%
!! CAATGTGTTATAACTTTTCA+AGG - chr5_4:21638290-21638309 Msa0843780:intron 25.0%
! ACAGTAATTAAGTTCAATTG+TGG + chr5_4:21638424-21638443 None:intergenic 25.0%
!! TCTGATAAGTTTTTGATGAA+AGG - chr5_4:21638590-21638609 Msa0843780:intron 25.0%
!! ATTGCATCTTATGCTTTTAT+AGG - chr5_4:21638696-21638715 Msa0843780:intron 25.0%
!!! AATATAAACCGGTTTTAAAC+TGG - chr5_4:21639094-21639113 Msa0843780:intron 25.0%
!! GTTTAAAACCAGTTTAAAAC+CGG + chr5_4:21639105-21639124 None:intergenic 25.0%
! ATTACTATTTCGTACTATGA+TGG - chr5_4:21639602-21639621 Msa0843780:intron 25.0%
! TTTATGAAAGGATTCTGATT+AGG - chr5_4:21639714-21639733 Msa0843780:intron 25.0%
! CAGAAAAGTTACTTCAAAAA+AGG + chr5_4:21639858-21639877 None:intergenic 25.0%
! TCTCATTCCTTTTTCCTTTT+AGG - chr5_4:21636319-21636338 Msa0843780:three_prime_UTR 30.0%
AACATGACCTAAAAGGAAAA+AGG + chr5_4:21636329-21636348 None:intergenic 30.0%
ATTCTTAATGCTGCACATAA+TGG - chr5_4:21636512-21636531 Msa0843780:three_prime_UTR 30.0%
! ATTAAGGTCTCTGAAAGTTT+GGG + chr5_4:21636662-21636681 None:intergenic 30.0%
! AATTAAGGTCTCTGAAAGTT+TGG + chr5_4:21636663-21636682 None:intergenic 30.0%
!! ATTTTGGCAGTTTTATACCA+TGG + chr5_4:21636923-21636942 None:intergenic 30.0%
! TAGTGTTTTATGGAGGATTT+TGG + chr5_4:21636939-21636958 None:intergenic 30.0%
AAATCCTCCATAAAACACTA+TGG - chr5_4:21636939-21636958 Msa0843780:intron 30.0%
CACTCGCAAAAGAAAATAAT+TGG - chr5_4:21636973-21636992 Msa0843780:intron 30.0%
CTATTAATGTCAGAAAGTAG+TGG - chr5_4:21637013-21637032 Msa0843780:intron 30.0%
GTACTAAATAACATACTGCT+AGG - chr5_4:21637064-21637083 Msa0843780:intron 30.0%
GATTCTCTTAAGTCTTAACA+CGG - chr5_4:21637120-21637139 Msa0843780:intron 30.0%
TAGCTATAAAATTGCAGTTG+CGG - chr5_4:21637323-21637342 Msa0843780:intron 30.0%
AATGAGTATTTGCAAGTAGA+CGG - chr5_4:21637352-21637371 Msa0843780:intron 30.0%
AAAAGACTAATAAATGGCCT+TGG - chr5_4:21637441-21637460 Msa0843780:intron 30.0%
CATGTTCTTTATCAACTAAG+TGG - chr5_4:21637508-21637527 Msa0843780:intron 30.0%
TTTAAAAATGTATGCAGGGA+CGG + chr5_4:21637578-21637597 None:intergenic 30.0%
! GAAGTTTAAAATCTGGATAG+AGG + chr5_4:21637693-21637712 None:intergenic 30.0%
ATTGTAATCGGGATTTGTAT+AGG - chr5_4:21637755-21637774 Msa0843780:intron 30.0%
TTGTAATCGGGATTTGTATA+GGG - chr5_4:21637756-21637775 Msa0843780:intron 30.0%
AATGCATTGCATTCAAAGAA+GGG - chr5_4:21637817-21637836 Msa0843780:intron 30.0%
!! TCAGTATATTTGCTGACTTT+AGG + chr5_4:21637911-21637930 None:intergenic 30.0%
AATATACTGATCTGAGTTGT+TGG - chr5_4:21637921-21637940 Msa0843780:intron 30.0%
TGCTATATGATGCAATATGT+TGG - chr5_4:21637947-21637966 Msa0843780:CDS 30.0%
!! CATTCCGTTTTTGAATAACA+AGG - chr5_4:21638100-21638119 Msa0843780:intron 30.0%
! ATTGTTGTGGTGATTTTTGA+AGG - chr5_4:21638247-21638266 Msa0843780:intron 30.0%
AACACATTGCAGTATCATAA+AGG + chr5_4:21638279-21638298 None:intergenic 30.0%
TTCCTAATATAATGGTGCTT+TGG - chr5_4:21638444-21638463 Msa0843780:intron 30.0%
TCCTAATATAATGGTGCTTT+GGG - chr5_4:21638445-21638464 Msa0843780:intron 30.0%
! ATTTGATGAGATTTTACTCG+AGG - chr5_4:21638555-21638574 Msa0843780:intron 30.0%
! CATCTTATGCTTTTATAGGT+TGG - chr5_4:21638700-21638719 Msa0843780:intron 30.0%
ACTCGATGATTACATCAAAA+AGG + chr5_4:21638761-21638780 None:intergenic 30.0%
TTTCTCATTCAATTTCCAGT+GGG + chr5_4:21638851-21638870 None:intergenic 30.0%
ATTTCTCATTCAATTTCCAG+TGG + chr5_4:21638852-21638871 None:intergenic 30.0%
! AGATCCGTGTTTTATGTATA+AGG - chr5_4:21638928-21638947 Msa0843780:intron 30.0%
CTCTCCTTATACATAAAACA+CGG + chr5_4:21638935-21638954 None:intergenic 30.0%
! AAATAACACTACCTTCGTTT+TGG - chr5_4:21638962-21638981 Msa0843780:intron 30.0%
!! GGAATTATCAATTTTGAGTG+AGG - chr5_4:21639024-21639043 Msa0843780:intron 30.0%
! CAGTTTAAAACTGTATGAAG+TGG - chr5_4:21639155-21639174 Msa0843780:intron 30.0%
GAAGTGGTTGAGTTAAAATA+TGG - chr5_4:21639171-21639190 Msa0843780:intron 30.0%
!!! CTGAGTTTTAATTTTTCGCT+GGG - chr5_4:21639372-21639391 Msa0843780:CDS 30.0%
!!! TGAGTTTTAATTTTTCGCTG+GGG - chr5_4:21639373-21639392 Msa0843780:CDS 30.0%
! AAGGATTCTGATTAGGATTT+TGG - chr5_4:21639721-21639740 Msa0843780:intron 30.0%
! TTGTTATGCTTTTACAGTGT+TGG - chr5_4:21639828-21639847 Msa0843780:intron 30.0%
ACTCAATGATTACGTTAGAA+AGG + chr5_4:21639889-21639908 None:intergenic 30.0%
AGTAGAGATATGGGATTTCT+TGG - chr5_4:21636064-21636083 Msa0843780:three_prime_UTR 35.0%
CTTGACTTCTTTGTACCATA+CGG + chr5_4:21636356-21636375 None:intergenic 35.0%
CCTTAAAATCGTAAACGACA+TGG + chr5_4:21636384-21636403 None:intergenic 35.0%
!! CCATGTCGTTTACGATTTTA+AGG - chr5_4:21636381-21636400 Msa0843780:three_prime_UTR 35.0%
! ACATTATTTGTTACCCGAGA+AGG + chr5_4:21636548-21636567 None:intergenic 35.0%
TGTCTAAATATTCAGGGACT+CGG - chr5_4:21636687-21636706 Msa0843780:intron 35.0%
!! AATGCCTTTAAAACCCTGTA+GGG + chr5_4:21636802-21636821 None:intergenic 35.0%
TTATCTATCGATCGTTACCA+TGG - chr5_4:21636903-21636922 Msa0843780:intron 35.0%
! TTTTCTTTTGCGAGTGTGAA+GGG + chr5_4:21636969-21636988 None:intergenic 35.0%
! ATTTTCTTTTGCGAGTGTGA+AGG + chr5_4:21636970-21636989 None:intergenic 35.0%
ATTAAACATACATTCAGGGG+CGG - chr5_4:21637183-21637202 Msa0843780:intron 35.0%
CTCTACATGTACCTAAAGTT+TGG + chr5_4:21637211-21637230 None:intergenic 35.0%
CTGTAGTAGATTTCATTCCA+AGG + chr5_4:21637461-21637480 None:intergenic 35.0%
AACTAAGTGGGAAAAACATG+TGG - chr5_4:21637521-21637540 Msa0843780:intron 35.0%
! ATCCTGCAATAGCATTTTTC+TGG - chr5_4:21637652-21637671 Msa0843780:intron 35.0%
ATCCAGAAAAATGCTATTGC+AGG + chr5_4:21637657-21637676 None:intergenic 35.0%
CAATGCATTGCATTCAAAGA+AGG - chr5_4:21637816-21637835 Msa0843780:intron 35.0%
AAACAGAGAGACATTCAAAG+AGG + chr5_4:21638021-21638040 None:intergenic 35.0%
CCTAATATAATGGTGCTTTG+GGG - chr5_4:21638446-21638465 Msa0843780:intron 35.0%
TTGATGAAAGGATTCTGATC+AGG - chr5_4:21638602-21638621 Msa0843780:intron 35.0%
TGATACGAATCAACATGTGA+AGG + chr5_4:21638645-21638664 None:intergenic 35.0%
!!! GGTTGGTAGTCTTTTTTTGA+AGG - chr5_4:21638717-21638736 Msa0843780:intron 35.0%
!! ATCAATTTTGAGTGAGGAAG+AGG - chr5_4:21639030-21639049 Msa0843780:intron 35.0%
!! TCAATTTTGAGTGAGGAAGA+GGG - chr5_4:21639031-21639050 Msa0843780:intron 35.0%
GAGTAACTCATAATGTTGAG+CGG - chr5_4:21639065-21639084 Msa0843780:intron 35.0%
AGCGGCTCATAAATATAAAC+CGG - chr5_4:21639083-21639102 Msa0843780:intron 35.0%
ATGCAGTTCAGTTAGTAGTT+TGG - chr5_4:21639198-21639217 Msa0843780:CDS 35.0%
!!! GCTGAGTTTTAATTTTTCGC+TGG - chr5_4:21639371-21639390 Msa0843780:CDS 35.0%
GTTTGTGGATGATAAGGTAA+TGG - chr5_4:21639416-21639435 Msa0843780:intron 35.0%
! CATTGAGTTGTATCATACTG+TGG - chr5_4:21639517-21639536 Msa0843780:CDS 35.0%
CACAAACATGTATCGCTTAT+AGG + chr5_4:21639551-21639570 None:intergenic 35.0%
TCTGATGAAGCGAATTTGAG+CGG + chr5_4:21636128-21636147 None:intergenic 40.0%
! ATTTGTTACCCGAGAAGGAT+CGG + chr5_4:21636543-21636562 None:intergenic 40.0%
!! ATGCCTTTAAAACCCTGTAG+GGG + chr5_4:21636801-21636820 None:intergenic 40.0%
!! CAATGCCTTTAAAACCCTGT+AGG + chr5_4:21636803-21636822 None:intergenic 40.0%
!!! CTACAGGGTTTTAAAGGCAT+TGG - chr5_4:21636801-21636820 Msa0843780:intron 40.0%
TACATTCGAGAAACCTACAC+CGG - chr5_4:21636831-21636850 Msa0843780:intron 40.0%
! TTTCTTTTGCGAGTGTGAAG+GGG + chr5_4:21636968-21636987 None:intergenic 40.0%
!! CGTCTGTAAGGCATTGTAAT+CGG - chr5_4:21637743-21637762 Msa0843780:intron 40.0%
!! GTCTGTAAGGCATTGTAATC+GGG - chr5_4:21637744-21637763 Msa0843780:intron 40.0%
ATGTCAAACCTATCAGTCCT+TGG + chr5_4:21638083-21638102 None:intergenic 40.0%
! ATTTTGAATAGCAGCACAGC+TGG - chr5_4:21638196-21638215 Msa0843780:intron 40.0%
! CCCCAAAGCACCATTATATT+AGG + chr5_4:21638449-21638468 None:intergenic 40.0%
! TGAGATTTTACTCGAGGACT+TGG - chr5_4:21638561-21638580 Msa0843780:intron 40.0%
CATTCAATTTCCAGTGGGAA+GGG + chr5_4:21638846-21638865 None:intergenic 40.0%
TCATTCAATTTCCAGTGGGA+AGG + chr5_4:21638847-21638866 None:intergenic 40.0%
ACATGCTCAAACCAAAACGA+AGG + chr5_4:21638976-21638995 None:intergenic 40.0%
! TTGGTTTGAGCATGTGTTAC+TGG - chr5_4:21638981-21639000 Msa0843780:intron 40.0%
TATGTTCGACGTTCAGTTTG+TGG - chr5_4:21639401-21639420 Msa0843780:intron 40.0%
CGTTCAGTTTGTGGATGATA+AGG - chr5_4:21639410-21639429 Msa0843780:intron 40.0%
TGATTGAGACACACTAAACC+TGG + chr5_4:21639633-21639652 None:intergenic 40.0%
AGCGGGATAGAGTAGAGATA+TGG - chr5_4:21636054-21636073 Msa0843780:three_prime_UTR 45.0%
GCGGGATAGAGTAGAGATAT+GGG - chr5_4:21636055-21636074 Msa0843780:three_prime_UTR 45.0%
CTGATGAAGCGAATTTGAGC+GGG + chr5_4:21636127-21636146 None:intergenic 45.0%
ACATCCTACACCAAAGCAGA+AGG + chr5_4:21636173-21636192 None:intergenic 45.0%
CGGAGGTAACATGACCTAAA+AGG + chr5_4:21636336-21636355 None:intergenic 45.0%
TAGGTCATGTTACCTCCGTA+TGG - chr5_4:21636338-21636357 Msa0843780:three_prime_UTR 45.0%
GACTTCTTTGTACCATACGG+AGG + chr5_4:21636353-21636372 None:intergenic 45.0%
!! TTTGTTTTCACCCCCCTACA+GGG - chr5_4:21636786-21636805 Msa0843780:intron 45.0%
!! TGCCTTTAAAACCCTGTAGG+GGG + chr5_4:21636800-21636819 None:intergenic 45.0%
GGTGTAGGTTTCTCGAATGT+AGG + chr5_4:21636832-21636851 None:intergenic 45.0%
!! AACCTACACCGGCTTTAAAC+CGG - chr5_4:21636842-21636861 Msa0843780:intron 45.0%
! TAAGCTGACCGGTTTAAAGC+CGG + chr5_4:21636853-21636872 None:intergenic 45.0%
GAGAGAGAGAATAAGCTGAC+CGG + chr5_4:21636864-21636883 None:intergenic 45.0%
! TTCTTTTGCGAGTGTGAAGG+GGG + chr5_4:21636967-21636986 None:intergenic 45.0%
GATCTACATCGGAGCTATGT+GGG + chr5_4:21637556-21637575 None:intergenic 45.0%
TATGTGGAACGACGTCTGTA+AGG - chr5_4:21637731-21637750 Msa0843780:intron 45.0%
CAGAGAGACATTCAAAGAGG+AGG + chr5_4:21638018-21638037 None:intergenic 45.0%
!! TGAGTTTTAATCCGCTGCCA+AGG - chr5_4:21638063-21638082 Msa0843780:intron 45.0%
! ATTGATGATTCCCTTCCCAC+TGG - chr5_4:21638833-21638852 Msa0843780:intron 45.0%
! TTGAGCATGTGTTACTGGTG+TGG - chr5_4:21638986-21639005 Msa0843780:intron 45.0%
! TTACTGGTGTGGTGTTAGAG+TGG - chr5_4:21638997-21639016 Msa0843780:intron 45.0%
! TACTGGTGTGGTGTTAGAGT+GGG - chr5_4:21638998-21639017 Msa0843780:intron 45.0%
CGTACTATGATGGTACTTCC+AGG - chr5_4:21639612-21639631 Msa0843780:intron 45.0%
!! TTCAAAAAAAAAAAAAAAAA+TGG + chr5_4:21637263-21637282 None:intergenic 5.0%
!! GAAAATATATTTAAAAATAT+TGG - chr5_4:21637604-21637623 Msa0843780:intron 5.0%
GCCATAGCAGAATCAAGCAG+CGG - chr5_4:21636036-21636055 Msa0843780:three_prime_UTR 50.0%
CCATAGCAGAATCAAGCAGC+GGG - chr5_4:21636037-21636056 Msa0843780:three_prime_UTR 50.0%
TTTGAGCGGGAGATAACTCG+AGG + chr5_4:21636114-21636133 None:intergenic 50.0%
ATGGCACTACCGATCCTTCT+CGG - chr5_4:21636531-21636550 Msa0843780:three_prime_UTR 50.0%
!!! CTTTGTTTTCACCCCCCTAC+AGG - chr5_4:21636785-21636804 Msa0843780:intron 50.0%
!! ACCCCCCTACAGGGTTTTAA+AGG - chr5_4:21636795-21636814 Msa0843780:intron 50.0%
!! GCCTTTAAAACCCTGTAGGG+GGG + chr5_4:21636799-21636818 None:intergenic 50.0%
! GGCGCCATAGTGTTTTATGG+AGG + chr5_4:21636946-21636965 None:intergenic 50.0%
GGATCTACATCGGAGCTATG+TGG + chr5_4:21637557-21637576 None:intergenic 50.0%
ATGCAGGGACGGATCTACAT+CGG + chr5_4:21637567-21637586 None:intergenic 50.0%
AACCTATCAGTCCTTGGCAG+CGG + chr5_4:21638077-21638096 None:intergenic 50.0%
! GTGTGGTGTTAGAGTGGGAA+GGG - chr5_4:21639003-21639022 Msa0843780:intron 50.0%
TTTGAGTGAGGAAGAGGGAG+AGG - chr5_4:21639036-21639055 Msa0843780:intron 50.0%
TTGAGTGAGGAAGAGGGAGA+GGG - chr5_4:21639037-21639056 Msa0843780:intron 50.0%
CACATAGCGTCAACAGCTAG+GGG + chr5_4:21639249-21639268 None:intergenic 50.0%
CCACATAGCGTCAACAGCTA+GGG + chr5_4:21639250-21639269 None:intergenic 50.0%
ACCACATAGCGTCAACAGCT+AGG + chr5_4:21639251-21639270 None:intergenic 50.0%
CCCGCTGCTTGATTCTGCTA+TGG + chr5_4:21636040-21636059 None:intergenic 55.0%
GAGATAACTCGAGGTCGTCG+GGG + chr5_4:21636105-21636124 None:intergenic 55.0%
GGAGATAACTCGAGGTCGTC+GGG + chr5_4:21636106-21636125 None:intergenic 55.0%
GGGAGATAACTCGAGGTCGT+CGG + chr5_4:21636107-21636126 None:intergenic 55.0%
AAGCAGAAGGCGAGAGCGAT+CGG + chr5_4:21636160-21636179 None:intergenic 55.0%
ATCGCTCTCGCCTTCTGCTT+TGG - chr5_4:21636160-21636179 Msa0843780:three_prime_UTR 55.0%
! CTCGCCTTCTGCTTTGGTGT+AGG - chr5_4:21636166-21636185 Msa0843780:three_prime_UTR 55.0%
TGGCACTACCGATCCTTCTC+GGG - chr5_4:21636532-21636551 Msa0843780:three_prime_UTR 55.0%
GACTCGGACTCGAGATCTCA+AGG - chr5_4:21636703-21636722 Msa0843780:intron 55.0%
! GACCGGTTTAAAGCCGGTGT+AGG + chr5_4:21636847-21636866 None:intergenic 55.0%
!!! GGGGGCGCCATAGTGTTTTA+TGG + chr5_4:21636949-21636968 None:intergenic 55.0%
CAGGGGCGGATCCAAACTTT+AGG - chr5_4:21637197-21637216 Msa0843780:intron 55.0%
ATCCGCTGCCAAGGACTGAT+AGG - chr5_4:21638072-21638091 Msa0843780:intron 55.0%
GAATAGCAGCACAGCTGGCT+AGG - chr5_4:21638201-21638220 Msa0843780:intron 55.0%
! GGTGTGGTGTTAGAGTGGGA+AGG - chr5_4:21639002-21639021 Msa0843780:intron 55.0%
TGAGTGAGGAAGAGGGAGAG+GGG - chr5_4:21639038-21639057 Msa0843780:intron 55.0%
CCCTAGCTGTTGACGCTATG+TGG - chr5_4:21639247-21639266 Msa0843780:intron 55.0%
ACTCGAGGTCGTCGGGGATT+GGG + chr5_4:21636099-21636118 None:intergenic 60.0%
AACTCGAGGTCGTCGGGGAT+TGG + chr5_4:21636100-21636119 None:intergenic 60.0%
GTCGTCGTAGCGTGCGTTCA+TGG - chr5_4:21636487-21636506 Msa0843780:three_prime_UTR 60.0%
GAGTGAGGAAGAGGGAGAGG+GGG - chr5_4:21639039-21639058 Msa0843780:intron 60.0%
TCGAGGTCGTCGGGGATTGG+GGG + chr5_4:21636097-21636116 None:intergenic 65.0%
CTCGAGGTCGTCGGGGATTG+GGG + chr5_4:21636098-21636117 None:intergenic 65.0%
CGAGGTCGTCGGGGATTGGG+GGG + chr5_4:21636096-21636115 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 21636011 21640043 21636011 ID=Msa0843780;Name=Msa0843780
chr5_4 mRNA 21636011 21640043 21636011 ID=Msa0843780-mRNA-1;Parent=Msa0843780;Name=Msa0843780-mRNA-1;_AED=0.19;_eAED=0.19;_QI=62|1|1|1|1|1|7|597|167
chr5_4 exon 21636011 21636682 21636011 ID=Msa0843780-mRNA-1:exon:8927;Parent=Msa0843780-mRNA-1
chr5_4 exon 21637933 21637992 21637933 ID=Msa0843780-mRNA-1:exon:8926;Parent=Msa0843780-mRNA-1
chr5_4 exon 21639191 21639247 21639191 ID=Msa0843780-mRNA-1:exon:8925;Parent=Msa0843780-mRNA-1
chr5_4 exon 21639330 21639404 21639330 ID=Msa0843780-mRNA-1:exon:8924;Parent=Msa0843780-mRNA-1
chr5_4 exon 21639501 21639557 21639501 ID=Msa0843780-mRNA-1:exon:8923;Parent=Msa0843780-mRNA-1
chr5_4 exon 21639652 21639713 21639652 ID=Msa0843780-mRNA-1:exon:8922;Parent=Msa0843780-mRNA-1
chr5_4 exon 21639864 21640043 21639864 ID=Msa0843780-mRNA-1:exon:8921;Parent=Msa0843780-mRNA-1
chr5_4 five_prime_UTR 21639982 21640043 21639982 ID=Msa0843780-mRNA-1:five_prime_utr;Parent=Msa0843780-mRNA-1
chr5_4 CDS 21639864 21639981 21639864 ID=Msa0843780-mRNA-1:cds;Parent=Msa0843780-mRNA-1
chr5_4 CDS 21639652 21639713 21639652 ID=Msa0843780-mRNA-1:cds;Parent=Msa0843780-mRNA-1
chr5_4 CDS 21639501 21639557 21639501 ID=Msa0843780-mRNA-1:cds;Parent=Msa0843780-mRNA-1
chr5_4 CDS 21639330 21639404 21639330 ID=Msa0843780-mRNA-1:cds;Parent=Msa0843780-mRNA-1
chr5_4 CDS 21639191 21639247 21639191 ID=Msa0843780-mRNA-1:cds;Parent=Msa0843780-mRNA-1
chr5_4 CDS 21637933 21637992 21637933 ID=Msa0843780-mRNA-1:cds;Parent=Msa0843780-mRNA-1
chr5_4 CDS 21636608 21636682 21636608 ID=Msa0843780-mRNA-1:cds;Parent=Msa0843780-mRNA-1
chr5_4 three_prime_UTR 21636011 21636607 21636011 ID=Msa0843780-mRNA-1:three_prime_utr;Parent=Msa0843780-mRNA-1
Gene Sequence

>Msa0843780

ATGGGATTTCTTGGCTATGACCCCCCAATCCCCGACGACCTCGAGTTATCTCCCGCTCAAATTCGCTTCATCAGAATAACACATCCGATCGCTCTCGCCTTCTGCTTTGGTGTAGGATGTCATGTTACCTCCGTATGGTACAAAGAAGTCAAGTTCGACCATGTCGTTTACGATTTTAAGCGTGCGTTCATGGATATTCTTAATGCTGCACATAATGGCACTACCGATCCTTCTCGGCTGAAGCGACCCAAACTTTCAGAGACCTTAATTACTTTGTCTAAATATTCAGGGACTCGGACTCGAGATCTCAAGGGTTTTAAAGGCATTGGAGATACCTACATTCGAGAAACCTACACCGGCTTTAAACCGTTGAGTTTTAATCCGCTGCCAAGGACTGATAGGTTTGACATTCCGTTTTTGAATAACAAGCTGAGTTTTAATTTTTCGCTGGGGAATGATATGTTCGACGTTCAGTTTGTGGATGATAAGGTAATGGATCAATAG

Protein sequence

>Msa0843780

MGFLGYDPPIPDDLELSPAQIRFIRITHPIALAFCFGVGCHVTSVWYKEVKFDHVVYDFKRAFMDILNAAHNGTTDPSRLKRPKLSETLITLSKYSGTRTRDLKGFKGIGDTYIRETYTGFKPLSFNPLPRTDRFDIPFLNNKLSFNFSLGNDMFDVQFVDDKVMDQ*