Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0806850 | XP_024640073.1 | 96.958 | 263 | 8 | 0 | 3 | 265 | 1 | 263 | 0.0 | 522 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0806850 | sp|Q8W4Y5|ASCL_SOLLC | 71.042 | 259 | 73 | 1 | 4 | 262 | 46 | 302 | 5.88e-136 | 388 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0806850 | A0A396HTB9 | 97.328 | 262 | 7 | 0 | 4 | 265 | 47 | 308 | 0.0 | 521 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0806850 | Msa0900630 | 0.803088 | 4.119624e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0806850 | MtrunA17_Chr5g0421391 | 97.328 | 262 | 7 | 0 | 4 | 265 | 47 | 308 | 0.0 | 521 |
| Msa0806850 | MtrunA17_Chr5g0421381 | 87.649 | 251 | 31 | 0 | 4 | 254 | 47 | 297 | 6.25e-161 | 449 |
| Msa0806850 | MtrunA17_Chr8g0368531 | 75.290 | 259 | 64 | 0 | 4 | 262 | 47 | 305 | 9.84e-147 | 412 |
| Msa0806850 | MtrunA17_Chr4g0044861 | 42.966 | 263 | 139 | 4 | 1 | 260 | 38 | 292 | 5.99e-67 | 209 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0806850 | AT1G13580.2 | 69.847 | 262 | 79 | 0 | 4 | 265 | 47 | 308 | 1.66e-132 | 377 |
| Msa0806850 | AT1G13580.3 | 69.847 | 262 | 79 | 0 | 4 | 265 | 47 | 308 | 1.66e-132 | 377 |
| Msa0806850 | AT3G25540.1 | 62.357 | 263 | 96 | 2 | 3 | 265 | 51 | 310 | 4.06e-120 | 345 |
| Msa0806850 | AT3G25540.3 | 62.357 | 263 | 96 | 2 | 3 | 265 | 51 | 310 | 4.06e-120 | 345 |
| Msa0806850 | AT1G26200.1 | 58.519 | 270 | 101 | 4 | 4 | 265 | 46 | 312 | 1.32e-109 | 319 |
| Msa0806850 | AT1G26200.3 | 55.160 | 281 | 104 | 4 | 4 | 265 | 46 | 323 | 1.15e-106 | 312 |
| Msa0806850 | AT1G13580.1 | 70.833 | 192 | 56 | 0 | 4 | 195 | 47 | 238 | 3.87e-96 | 282 |
| Msa0806850 | AT3G25540.2 | 63.918 | 194 | 68 | 1 | 2 | 195 | 50 | 241 | 1.18e-90 | 268 |
| Msa0806850 | AT1G26200.2 | 60.938 | 192 | 72 | 1 | 4 | 195 | 46 | 234 | 1.03e-83 | 250 |
| Msa0806850 | AT3G19260.1 | 47.899 | 238 | 117 | 2 | 25 | 262 | 66 | 296 | 1.20e-73 | 227 |
Find 43 sgRNAs with CRISPR-Local
Find 418 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATACTTGCTTTAATATTC+TGG | 0.136312 | 5_3:-27341900 | Msa0806850:CDS |
| AAAGAAGATTAGGAAATTTA+AGG | 0.149891 | 5_3:-27342257 | Msa0806850:CDS |
| CGACGCTACTGATGTGTTTC+TGG | 0.166561 | 5_3:-27339714 | Msa0806850:CDS |
| TGTTTATATACACTAAATTT+TGG | 0.195091 | 5_3:+27337328 | None:intergenic |
| TGCTTGTTCTTAATATTTAT+TGG | 0.221668 | 5_3:-27337913 | Msa0806850:CDS |
| CCAGAATATTAAAGCAAGTA+TGG | 0.250823 | 5_3:+27341900 | None:intergenic |
| GCATCATTTACTACCCATTC+TGG | 0.256348 | 5_3:-27339604 | Msa0806850:CDS |
| GGTGATTGACACCTTGAAAT+TGG | 0.282939 | 5_3:-27337996 | Msa0806850:CDS |
| TGATTCTGCACCGCTGTATA+TGG | 0.289604 | 5_3:+27339676 | None:intergenic |
| AATGAGCATGAAAACAAAAT+TGG | 0.302168 | 5_3:-27337450 | Msa0806850:exon |
| GCACTCAGGTTTGTTCGAAT+TGG | 0.314114 | 5_3:-27339758 | Msa0806850:intron |
| TGGTCCAAGACAAGACAAAA+AGG | 0.376327 | 5_3:+27339633 | None:intergenic |
| CATACTTGCTTTAATATTCT+GGG | 0.380439 | 5_3:-27341899 | Msa0806850:CDS |
| AGAGTGGCAAACAATGGATT+TGG | 0.383955 | 5_3:-27343690 | None:intergenic |
| GTTGGTCAAATCTGCGCAAA+AGG | 0.396663 | 5_3:-27337866 | Msa0806850:CDS |
| CTGATGCTTCGGATGCTTGT+TGG | 0.406436 | 5_3:-27337884 | Msa0806850:CDS |
| CAGATGCTTGTCCAATTTCA+AGG | 0.422664 | 5_3:+27337985 | None:intergenic |
| TCGGGCCAGGGAATCAGATA+TGG | 0.427253 | 5_3:-27342135 | Msa0806850:CDS |
| ATGATACGAGAAAGAAGATT+AGG | 0.436397 | 5_3:-27342267 | Msa0806850:CDS |
| CTTGAAATTGGACAAGCATC+TGG | 0.449431 | 5_3:-27337984 | Msa0806850:CDS |
| CATCATTTACTACCCATTCT+GGG | 0.450526 | 5_3:-27339603 | Msa0806850:CDS |
| ATTGGTGGGTGCTGATGCTT+CGG | 0.460019 | 5_3:-27337895 | Msa0806850:CDS |
| ACTGATGTGTTTCTGGAGAT+AGG | 0.473929 | 5_3:-27339707 | Msa0806850:CDS |
| GTTAGTGAAGATATTAGATC+TGG | 0.474457 | 5_3:-27337839 | Msa0806850:intron |
| TCTGGGTTCTTCGAAGTACA+AGG | 0.495871 | 5_3:-27339586 | Msa0806850:intron |
| TTGTTCTTAATATTTATTGG+TGG | 0.510641 | 5_3:-27337910 | Msa0806850:CDS |
| TCTGGCCATATCTGATTCCC+TGG | 0.512470 | 5_3:+27342130 | None:intergenic |
| TGTTCTTAATATTTATTGGT+GGG | 0.517092 | 5_3:-27337909 | Msa0806850:CDS |
| GGGCTGTATATGTATGGTGC+TGG | 0.521303 | 5_3:-27341937 | Msa0806850:CDS |
| TTGGTCAAATCTGCGCAAAA+GGG | 0.554148 | 5_3:-27337865 | Msa0806850:CDS |
| TTGAAGGGGCTGTATATGTA+TGG | 0.554283 | 5_3:-27341943 | Msa0806850:CDS |
| CTACAATATATGACATGCCT+AGG | 0.555475 | 5_3:+27337383 | None:intergenic |
| TACTTCGAAGAACCCAGAAT+GGG | 0.559855 | 5_3:+27339591 | None:intergenic |
| ACACATCAGTAGCGTCGTGA+AGG | 0.571391 | 5_3:+27339720 | None:intergenic |
| CTGCAACATATGATGAACCT+TGG | 0.572580 | 5_3:-27342183 | Msa0806850:CDS |
| CACATCAGTAGCGTCGTGAA+GGG | 0.597324 | 5_3:+27339721 | None:intergenic |
| GTACTTCGAAGAACCCAGAA+TGG | 0.597437 | 5_3:+27339590 | None:intergenic |
| GGAAATTTAAGGAATCAGCA+TGG | 0.606420 | 5_3:-27342246 | Msa0806850:CDS |
| GTAGTAAATGATGCGCAGTA+TGG | 0.606821 | 5_3:+27339613 | None:intergenic |
| ATTTGCAGAAAGTGGCCAGA+CGG | 0.612078 | 5_3:-27342333 | Msa0806850:intron |
| AGAGACAACATGATGTGTCA+TGG | 0.614305 | 5_3:+27341849 | None:intergenic |
| GAAATTGGACAAGCATCTGG+TGG | 0.641961 | 5_3:-27337981 | Msa0806850:CDS |
| GGCAAAATGTCCATATACAG+CGG | 0.676062 | 5_3:-27339686 | Msa0806850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGATTTTCTATAAATATT+TGG | - | chr5_3:27338190-27338209 | Msa0806850:intron | 10.0% |
| !!! | ATGATTTTCTATAAATATTT+GGG | - | chr5_3:27338191-27338210 | Msa0806850:intron | 10.0% |
| !! | AAGTAAAAAAATATTACATT+TGG | - | chr5_3:27342322-27342341 | Msa0806850:CDS | 10.0% |
| !! | ATTAAATTAAATTTGAACAA+TGG | + | chr5_3:27342876-27342895 | None:intergenic | 10.0% |
| !! | AAATTGTTTATAAGCTATAT+TGG | + | chr5_3:27337462-27337481 | None:intergenic | 15.0% |
| !! | AGAAAATAATAATAATGTAG+TGG | - | chr5_3:27337727-27337746 | Msa0806850:intron | 15.0% |
| !!! | TTACTGATACAAAATATTTT+TGG | - | chr5_3:27338772-27338791 | Msa0806850:intron | 15.0% |
| !!! | TACTGATACAAAATATTTTT+GGG | - | chr5_3:27338773-27338792 | Msa0806850:intron | 15.0% |
| !! | TTCAATCTGAAAATTAAAAA+TGG | + | chr5_3:27338967-27338986 | None:intergenic | 15.0% |
| !! | ATATTAAAACGAAAAAAAGA+AGG | - | chr5_3:27339264-27339283 | Msa0806850:intron | 15.0% |
| !! | TATTAAAACGAAAAAAAGAA+GGG | - | chr5_3:27339265-27339284 | Msa0806850:intron | 15.0% |
| !!! | AATTTTGCTTTAAAATAATC+TGG | - | chr5_3:27339932-27339951 | Msa0806850:intron | 15.0% |
| !!! | ATTTTGCTTTAAAATAATCT+GGG | - | chr5_3:27339933-27339952 | Msa0806850:intron | 15.0% |
| !! | TGAAATTCATATTTCAAAAA+AGG | - | chr5_3:27341420-27341439 | Msa0806850:intron | 15.0% |
| !! | AAAAAATAAAAAAAAGAGCA+AGG | + | chr5_3:27341790-27341809 | None:intergenic | 15.0% |
| !! | TATAAGCTTATTAGTATTTA+TGG | - | chr5_3:27342089-27342108 | Msa0806850:intron | 15.0% |
| !! | CATATAAAAGAAAATGTTAA+GGG | + | chr5_3:27343431-27343450 | None:intergenic | 15.0% |
| !!! | TGTTTATATACACTAAATTT+TGG | + | chr5_3:27343606-27343625 | None:intergenic | 15.0% |
| !!! | TTTCAATAAATTCTAGAAGA+AGG | + | chr5_3:27337412-27337431 | None:intergenic | 20.0% |
| !!! | ATAATAATAATGTAGTGGAA+AGG | - | chr5_3:27337732-27337751 | Msa0806850:intron | 20.0% |
| !!! | TAATAATAATGTAGTGGAAA+GGG | - | chr5_3:27337733-27337752 | Msa0806850:intron | 20.0% |
| !! | TGATATGATTATACAGAAAA+AGG | + | chr5_3:27337810-27337829 | None:intergenic | 20.0% |
| !! | AACTTAGAATTGAAAGAAAA+TGG | + | chr5_3:27338024-27338043 | None:intergenic | 20.0% |
| !!! | CATTTGTGAGAATATTTTAA+AGG | - | chr5_3:27338402-27338421 | Msa0806850:intron | 20.0% |
| !!! | ATATTTTAAAGGTTACATTG+AGG | - | chr5_3:27338413-27338432 | Msa0806850:intron | 20.0% |
| !!! | CTTATAATGCTTTGTTTATA+AGG | - | chr5_3:27338483-27338502 | Msa0806850:intron | 20.0% |
| !! | AAAGAAGATTAGGAAATTTA+AGG | - | chr5_3:27338674-27338693 | Msa0806850:intron | 20.0% |
| !!! | AATTTTCAGATTGAAATTGA+AGG | - | chr5_3:27338972-27338991 | Msa0806850:intron | 20.0% |
| !!! | ATTTTCAGATTGAAATTGAA+GGG | - | chr5_3:27338973-27338992 | Msa0806850:intron | 20.0% |
| !! | AAATAAAATAAAGTTAGTGC+AGG | + | chr5_3:27339216-27339235 | None:intergenic | 20.0% |
| !!! | TTTAGGTTTGTTCTTTAATT+GGG | + | chr5_3:27339321-27339340 | None:intergenic | 20.0% |
| !!! | TTTTAGGTTTGTTCTTTAAT+TGG | + | chr5_3:27339322-27339341 | None:intergenic | 20.0% |
| !! | TAAAGAACAAACCTAAAATT+AGG | - | chr5_3:27339324-27339343 | Msa0806850:intron | 20.0% |
| !!! | TTCATACATATTTTTAGAGT+AGG | + | chr5_3:27339465-27339484 | None:intergenic | 20.0% |
| !!! | TTCATACATATTTTAAGAGT+AGG | + | chr5_3:27339567-27339586 | None:intergenic | 20.0% |
| !!! | GAATTTTCAGTTTGAATTAT+AGG | - | chr5_3:27339872-27339891 | Msa0806850:intron | 20.0% |
| !!! | AACTTTAACTTATCTAGAAT+AGG | - | chr5_3:27340549-27340568 | Msa0806850:intron | 20.0% |
| !!! | TTTTTGCTTGAAAGATTATT+TGG | + | chr5_3:27340922-27340941 | None:intergenic | 20.0% |
| !! | AGGAAAACAAAATGTAAATT+CGG | + | chr5_3:27341388-27341407 | None:intergenic | 20.0% |
| !!! | TTTGAAATATGAATTTCAAC+AGG | + | chr5_3:27341418-27341437 | None:intergenic | 20.0% |
| !!! | TTCTGTTTTGAACATAATTT+TGG | + | chr5_3:27341509-27341528 | None:intergenic | 20.0% |
| !!! | CAGGTTTTTTTATTCATAAA+CGG | + | chr5_3:27341609-27341628 | None:intergenic | 20.0% |
| !! | AATTGAACTTCCAATTTAAA+GGG | + | chr5_3:27341723-27341742 | None:intergenic | 20.0% |
| !! | AAATTGAACTTCCAATTTAA+AGG | + | chr5_3:27341724-27341743 | None:intergenic | 20.0% |
| !! | TTACCATTGCATAAAAATTA+AGG | + | chr5_3:27341754-27341773 | None:intergenic | 20.0% |
| !!! | TCTTGATGATTTACTATTAT+AGG | - | chr5_3:27341882-27341901 | Msa0806850:CDS | 20.0% |
| !! | TTTATATAATCACTTAATGC+AGG | - | chr5_3:27341918-27341937 | Msa0806850:CDS | 20.0% |
| !!! | AATCTGAAGTAGTAAATTTA+TGG | - | chr5_3:27342043-27342062 | Msa0806850:intron | 20.0% |
| !!! | TTAGGTTTCCAATTTTTTAT+TGG | - | chr5_3:27342713-27342732 | Msa0806850:intron | 20.0% |
| !!! | TAGGTTTCCAATTTTTTATT+GGG | - | chr5_3:27342714-27342733 | Msa0806850:intron | 20.0% |
| !! | TTTCAAACCCAATAAAAAAT+TGG | + | chr5_3:27342724-27342743 | None:intergenic | 20.0% |
| !! | TGCTTGTTCTTAATATTTAT+TGG | - | chr5_3:27343018-27343037 | Msa0806850:intron | 20.0% |
| !! | TTGTTCTTAATATTTATTGG+TGG | - | chr5_3:27343021-27343040 | Msa0806850:intron | 20.0% |
| !! | TGTTCTTAATATTTATTGGT+GGG | - | chr5_3:27343022-27343041 | Msa0806850:intron | 20.0% |
| !! | CTAAATATCCATTACATATA+TGG | - | chr5_3:27343119-27343138 | Msa0806850:intron | 20.0% |
| !! | GACTATATAACTACTATATA+TGG | - | chr5_3:27343325-27343344 | Msa0806850:intron | 20.0% |
| !! | ATATAACTACTATATATGGA+CGG | - | chr5_3:27343329-27343348 | Msa0806850:intron | 20.0% |
| !!! | CTGTTTAAAAAAGTTTTAAC+TGG | - | chr5_3:27343384-27343403 | Msa0806850:intron | 20.0% |
| !! | GCATATAAAAGAAAATGTTA+AGG | + | chr5_3:27343432-27343451 | None:intergenic | 20.0% |
| ! | TATAATGCAGAAATCATGAA+AGG | + | chr5_3:27337312-27337331 | None:intergenic | 25.0% |
| !!! | CACTTCTATTTTTACAGATA+AGG | + | chr5_3:27337498-27337517 | None:intergenic | 25.0% |
| ! | TCCAAATAAATTAACCCATT+TGG | - | chr5_3:27337838-27337857 | Msa0806850:intron | 25.0% |
| ! | ATGTTAGGATGAACAATAAT+TGG | - | chr5_3:27337908-27337927 | Msa0806850:CDS | 25.0% |
| ! | TGTTAGGATGAACAATAATT+GGG | - | chr5_3:27337909-27337928 | Msa0806850:CDS | 25.0% |
| ! | GATGCATAAATAGTTAAACA+AGG | - | chr5_3:27337966-27337985 | Msa0806850:CDS | 25.0% |
| ! | AAGGAGATATCTTTGTTAAA+TGG | - | chr5_3:27337985-27338004 | Msa0806850:CDS | 25.0% |
| ! | TGTGAATCTATGAATGTAAT+TGG | - | chr5_3:27338081-27338100 | Msa0806850:intron | 25.0% |
| ! | AATCTATGAATGTAATTGGA+TGG | - | chr5_3:27338085-27338104 | Msa0806850:intron | 25.0% |
| !!! | ACTAGGAATTTTGAGTAAAA+TGG | - | chr5_3:27338108-27338127 | Msa0806850:intron | 25.0% |
| !!! | AATTTTGAGTAAAATGGCTA+AGG | - | chr5_3:27338114-27338133 | Msa0806850:intron | 25.0% |
| ! | TAATGATGCATAGATAAAGT+TGG | - | chr5_3:27338144-27338163 | Msa0806850:intron | 25.0% |
| !!! | TAATGCTTTGTTTATAAGGA+TGG | - | chr5_3:27338487-27338506 | Msa0806850:intron | 25.0% |
| ! | ATATCAACACAAATTGCAAA+TGG | + | chr5_3:27338544-27338563 | None:intergenic | 25.0% |
| !! | TATTTTGTATCAGTAAACCA+AGG | + | chr5_3:27338768-27338787 | None:intergenic | 25.0% |
| !!! | GATACAAAATATTTTTGGGT+CGG | - | chr5_3:27338777-27338796 | Msa0806850:intron | 25.0% |
| !!! | ATACAAAATATTTTTGGGTC+GGG | - | chr5_3:27338778-27338797 | Msa0806850:intron | 25.0% |
| !! | TCTTACTTAATCTTTTGATC+TGG | + | chr5_3:27338822-27338841 | None:intergenic | 25.0% |
| ! | ACTGCTGAATTAATAAACTT+AGG | + | chr5_3:27338942-27338961 | None:intergenic | 25.0% |
| !! | TTTTCAGATTGAAATTGAAG+GGG | - | chr5_3:27338974-27338993 | Msa0806850:intron | 25.0% |
| ! | CATACTTGCTTTAATATTCT+GGG | - | chr5_3:27339032-27339051 | Msa0806850:intron | 25.0% |
| !! | TTGTGTTATCGTACATTTTT+AGG | - | chr5_3:27339115-27339134 | Msa0806850:intron | 25.0% |
| !! | TTCTACTTTAGAGATTTGTT+AGG | + | chr5_3:27339354-27339373 | None:intergenic | 25.0% |
| !!! | AACAAATCTCTAAAGTAGAA+AGG | - | chr5_3:27339354-27339373 | Msa0806850:intron | 25.0% |
| !!! | GTTTTTTGACAAAGTTACAA+AGG | + | chr5_3:27339906-27339925 | None:intergenic | 25.0% |
| ! | ATAGCAGATTATACATTAGA+TGG | + | chr5_3:27339971-27339990 | None:intergenic | 25.0% |
| ! | AAGAAAACATGATGAACAAT+TGG | - | chr5_3:27340159-27340178 | Msa0806850:intron | 25.0% |
| !! | TTTTCAAACCACTTAATGAA+GGG | + | chr5_3:27340311-27340330 | None:intergenic | 25.0% |
| ! | ATAAAAATATTTGTGTGGAG+TGG | + | chr5_3:27340378-27340397 | None:intergenic | 25.0% |
| ! | CTTGCATAAAAATATTTGTG+TGG | + | chr5_3:27340383-27340402 | None:intergenic | 25.0% |
| ! | TTTCCTTCAGAATTTATACT+TGG | + | chr5_3:27340434-27340453 | None:intergenic | 25.0% |
| ! | GAACACCTAGATATATAAAA+GGG | - | chr5_3:27340600-27340619 | Msa0806850:intron | 25.0% |
| ! | AACACCTAGATATATAAAAG+GGG | - | chr5_3:27340601-27340620 | Msa0806850:intron | 25.0% |
| !! | TTTTTCTGCAGTTTATGAAT+TGG | - | chr5_3:27340687-27340706 | Msa0806850:intron | 25.0% |
| ! | AGCAAGAAAAATCAATAATC+AGG | - | chr5_3:27340947-27340966 | Msa0806850:intron | 25.0% |
| ! | CATTCAACAAACAAAGTTTA+GGG | - | chr5_3:27340974-27340993 | Msa0806850:intron | 25.0% |
| !! | ATCTTTGTTTCAGAGAAATT+TGG | + | chr5_3:27341075-27341094 | None:intergenic | 25.0% |
| ! | AACAAAATGTAAATTCGGAA+CGG | + | chr5_3:27341383-27341402 | None:intergenic | 25.0% |
| ! | TACCTTCTTTATCATCTAAA+GGG | + | chr5_3:27341579-27341598 | None:intergenic | 25.0% |
| ! | TTACCTTCTTTATCATCTAA+AGG | + | chr5_3:27341580-27341599 | None:intergenic | 25.0% |
| !! | TCATACTTTTCCCTTTAAAT+TGG | - | chr5_3:27341710-27341729 | Msa0806850:intron | 25.0% |
| !! | AGTCCTTAATTTTTATGCAA+TGG | - | chr5_3:27341748-27341767 | Msa0806850:intron | 25.0% |
| ! | TTTCTTAAGCAGAAAAAGTT+TGG | - | chr5_3:27341944-27341963 | Msa0806850:CDS | 25.0% |
| ! | AATTTACTACTTCAGATTAC+AGG | + | chr5_3:27342041-27342060 | None:intergenic | 25.0% |
| !!! | TATAAGAACTTTTTTGTCAG+TGG | + | chr5_3:27342073-27342092 | None:intergenic | 25.0% |
| ! | AATAACAATTTGTACAAGTG+TGG | + | chr5_3:27342166-27342185 | None:intergenic | 25.0% |
| ! | AAATATTACATTTGGCAGTT+AGG | - | chr5_3:27342330-27342349 | Msa0806850:intron | 25.0% |
| !!! | AATATTTTTGACAGCATTCA+TGG | + | chr5_3:27342576-27342595 | None:intergenic | 25.0% |
| !!! | AAATCAGCCTTTACTTTTAA+AGG | + | chr5_3:27342672-27342691 | None:intergenic | 25.0% |
| ! | GAAGAAAACAATTAAACAGA+AGG | + | chr5_3:27342899-27342918 | None:intergenic | 25.0% |
| ! | TTAGAAAGCCATATATGTAA+TGG | + | chr5_3:27343130-27343149 | None:intergenic | 25.0% |
| !! | TTAATTCCATTTAGAGTTTG+AGG | + | chr5_3:27343197-27343216 | None:intergenic | 25.0% |
| ! | ATGGAATTAAGCAAACAATT+TGG | - | chr5_3:27343207-27343226 | Msa0806850:intron | 25.0% |
| ! | AATGAGCATGAAAACAAAAT+TGG | - | chr5_3:27343481-27343500 | Msa0806850:intron | 25.0% |
| !!! | TATTGTCTCACTTTTTGAAA+TGG | - | chr5_3:27343505-27343524 | Msa0806850:intron | 25.0% |
| AATAAGTTGTTTATCCAAGC+AGG | - | chr5_3:27337536-27337555 | Msa0806850:intron | 30.0% | |
| !!! | ATAATTTTCGAGTCAGAAAC+TGG | + | chr5_3:27337632-27337651 | None:intergenic | 30.0% |
| TCGAAAATTATTACGATAGC+AGG | - | chr5_3:27337641-27337660 | Msa0806850:intron | 30.0% | |
| ! | AAAAGCTGTAAGTGAGATTT+TGG | - | chr5_3:27337691-27337710 | Msa0806850:intron | 30.0% |
| ATGAACACCAACAATGAATT+TGG | - | chr5_3:27337768-27337787 | Msa0806850:intron | 30.0% | |
| !! | GCCAAATGGGTTAATTTATT+TGG | + | chr5_3:27337842-27337861 | None:intergenic | 30.0% |
| AATTGGGAATTCGAGTATTT+AGG | - | chr5_3:27337925-27337944 | Msa0806850:CDS | 30.0% | |
| ATTGGGAATTCGAGTATTTA+GGG | - | chr5_3:27337926-27337945 | Msa0806850:CDS | 30.0% | |
| GAAGGAAAATGATTGAATAG+AGG | + | chr5_3:27338221-27338240 | None:intergenic | 30.0% | |
| ! | ATTTTCCTTCTTCTTGTTAC+TGG | - | chr5_3:27338231-27338250 | Msa0806850:intron | 30.0% |
| TATATCCAGTAACAAGAAGA+AGG | + | chr5_3:27338239-27338258 | None:intergenic | 30.0% | |
| ! | GTTTTGTACATAGTTCAAAC+AGG | - | chr5_3:27338298-27338317 | Msa0806850:intron | 30.0% |
| ACAAATGTACCATTTGTTTG+GGG | + | chr5_3:27338389-27338408 | None:intergenic | 30.0% | |
| CACAAATGTACCATTTGTTT+GGG | + | chr5_3:27338390-27338409 | None:intergenic | 30.0% | |
| TCACAAATGTACCATTTGTT+TGG | + | chr5_3:27338391-27338410 | None:intergenic | 30.0% | |
| ATGTCTGTGTCTATTCTATA+TGG | - | chr5_3:27338453-27338472 | Msa0806850:intron | 30.0% | |
| TGTCTGTGTCTATTCTATAT+GGG | - | chr5_3:27338454-27338473 | Msa0806850:intron | 30.0% | |
| AAATCTCTCAGCATCTTATA+AGG | + | chr5_3:27338518-27338537 | None:intergenic | 30.0% | |
| TGAATGAAATTTGCAGAAAG+TGG | - | chr5_3:27338590-27338609 | Msa0806850:intron | 30.0% | |
| ATGATACGAGAAAGAAGATT+AGG | - | chr5_3:27338664-27338683 | Msa0806850:intron | 30.0% | |
| !! | GAAGTGCGTTTATTTTCTAT+CGG | - | chr5_3:27338707-27338726 | Msa0806850:intron | 30.0% |
| CCAGAATATTAAAGCAAGTA+TGG | + | chr5_3:27339034-27339053 | None:intergenic | 30.0% | |
| CCATACTTGCTTTAATATTC+TGG | - | chr5_3:27339031-27339050 | Msa0806850:intron | 30.0% | |
| TTCTTAATGCCTTTACCTAA+AGG | - | chr5_3:27339150-27339169 | Msa0806850:intron | 30.0% | |
| AAAAAGAAGGGTTACAAGAT+TGG | - | chr5_3:27339277-27339296 | Msa0806850:intron | 30.0% | |
| AAAAGAAGGGTTACAAGATT+GGG | - | chr5_3:27339278-27339297 | Msa0806850:intron | 30.0% | |
| ! | TGTTAGGTTTGCCTAATTTT+AGG | + | chr5_3:27339338-27339357 | None:intergenic | 30.0% |
| TGGCAATTTGACTACTAAAT+TGG | + | chr5_3:27339836-27339855 | None:intergenic | 30.0% | |
| AAACTGAAAATTCTCTCAAC+TGG | + | chr5_3:27339865-27339884 | None:intergenic | 30.0% | |
| ATTATACATTAGATGGCAGA+TGG | + | chr5_3:27339964-27339983 | None:intergenic | 30.0% | |
| ! | CATCATGTTTTCTTTCCATT+TGG | + | chr5_3:27340153-27340172 | None:intergenic | 30.0% |
| CAATTGGATTATTGTTCCTT+AGG | - | chr5_3:27340175-27340194 | Msa0806850:intron | 30.0% | |
| ! | TTTTACCGACAAAGATCAAT+GGG | + | chr5_3:27340223-27340242 | None:intergenic | 30.0% |
| ! | ATTTTACCGACAAAGATCAA+TGG | + | chr5_3:27340224-27340243 | None:intergenic | 30.0% |
| CGGTAAAATAATTCCAACAT+AGG | - | chr5_3:27340235-27340254 | Msa0806850:intron | 30.0% | |
| ! | GTTTTCAAACCACTTAATGA+AGG | + | chr5_3:27340312-27340331 | None:intergenic | 30.0% |
| AATCAAGCTATTGAAGGAAT+TGG | + | chr5_3:27340409-27340428 | None:intergenic | 30.0% | |
| AATTCCTTCAATAGCTTGAT+TGG | - | chr5_3:27340408-27340427 | Msa0806850:intron | 30.0% | |
| TAAAGTTGAAACTTGCAACT+TGG | + | chr5_3:27340536-27340555 | None:intergenic | 30.0% | |
| GGAACACCTAGATATATAAA+AGG | - | chr5_3:27340599-27340618 | Msa0806850:intron | 30.0% | |
| !! | ATTCAAGAATCTTTGAGACA+TGG | + | chr5_3:27340640-27340659 | None:intergenic | 30.0% |
| TTCCACTTTGTTCTTACAAA+GGG | + | chr5_3:27340779-27340798 | None:intergenic | 30.0% | |
| TTTCCACTTTGTTCTTACAA+AGG | + | chr5_3:27340780-27340799 | None:intergenic | 30.0% | |
| TGTAAGAACAAAGTGGAAAT+TGG | - | chr5_3:27340781-27340800 | Msa0806850:intron | 30.0% | |
| ! | CCTAAACTTTGTTTGTTGAA+TGG | + | chr5_3:27340976-27340995 | None:intergenic | 30.0% |
| CCATTCAACAAACAAAGTTT+AGG | - | chr5_3:27340973-27340992 | Msa0806850:intron | 30.0% | |
| ATTTCGGAATGAAATGTCAT+CGG | - | chr5_3:27341032-27341051 | Msa0806850:intron | 30.0% | |
| TTTGTTTCAGAGAAATTTGG+AGG | + | chr5_3:27341072-27341091 | None:intergenic | 30.0% | |
| ATTATTTGTTCAATGCACTC+AGG | - | chr5_3:27341159-27341178 | Msa0806850:intron | 30.0% | |
| ! | TTATCCTTTTTGTCTTGTCT+TGG | - | chr5_3:27341294-27341313 | Msa0806850:intron | 30.0% |
| TTCCCTTTAGATGATAAAGA+AGG | - | chr5_3:27341574-27341593 | Msa0806850:intron | 30.0% | |
| TAACTAATCATGGATACGTT+AGG | - | chr5_3:27341650-27341669 | Msa0806850:intron | 30.0% | |
| CAAGCACTTAATTGGTAAAA+TGG | + | chr5_3:27341854-27341873 | None:intergenic | 30.0% | |
| ! | CATTTTACCAATTAAGTGCT+TGG | - | chr5_3:27341852-27341871 | Msa0806850:CDS | 30.0% |
| ! | TGATTTTCCAAGCACTTAAT+TGG | + | chr5_3:27341862-27341881 | None:intergenic | 30.0% |
| GTTAGAAGCTAATCTAAACT+GGG | + | chr5_3:27342009-27342028 | None:intergenic | 30.0% | |
| AGTTAGAAGCTAATCTAAAC+TGG | + | chr5_3:27342010-27342029 | None:intergenic | 30.0% | |
| TTGAAGCAGCAAAATATGAA+TGG | + | chr5_3:27342262-27342281 | None:intergenic | 30.0% | |
| TGGAAATCATTATATCCTGT+AGG | - | chr5_3:27342377-27342396 | Msa0806850:intron | 30.0% | |
| ATCATTATATCCTGTAGGAT+AGG | - | chr5_3:27342382-27342401 | Msa0806850:intron | 30.0% | |
| TAATAATAACTGACTGCTAC+TGG | + | chr5_3:27342450-27342469 | None:intergenic | 30.0% | |
| GAGAACTCTTTGTTAAGAAT+GGG | - | chr5_3:27342517-27342536 | Msa0806850:intron | 30.0% | |
| ! | TTTCTGGCCTTTAAAAGTAA+AGG | - | chr5_3:27342662-27342681 | Msa0806850:intron | 30.0% |
| TGATATCCAAGTCTGATATT+AGG | - | chr5_3:27342695-27342714 | Msa0806850:intron | 30.0% | |
| AACCAAGTAAAGTTTGTCTT+TGG | + | chr5_3:27342757-27342776 | None:intergenic | 30.0% | |
| AGACAAACTTTACTTGGTTT+AGG | - | chr5_3:27342758-27342777 | Msa0806850:intron | 30.0% | |
| GACAAACTTTACTTGGTTTA+GGG | - | chr5_3:27342759-27342778 | Msa0806850:intron | 30.0% | |
| TGAATCACAGAATAAACTTC+AGG | + | chr5_3:27342829-27342848 | None:intergenic | 30.0% | |
| GTTAGTGAAGATATTAGATC+TGG | - | chr5_3:27343092-27343111 | Msa0806850:intron | 30.0% | |
| AAGATACCAACTACAAGAAA+TGG | - | chr5_3:27343169-27343188 | Msa0806850:intron | 30.0% | |
| ! | GGGTAATTTTTATGTGAAAG+TGG | - | chr5_3:27343293-27343312 | Msa0806850:intron | 30.0% |
| !!! | TGTGATTTTTTTAGTCGTCA+TGG | + | chr5_3:27343361-27343380 | None:intergenic | 30.0% |
| !!! | TAGATTTTTTACATGCACCT+AGG | - | chr5_3:27343531-27343550 | Msa0806850:intron | 30.0% |
| AACCTACCGGAATAAAGATT+CGG | + | chr5_3:27337667-27337686 | None:intergenic | 35.0% | |
| !!! | ACAGCTTTTTTCTAACCTAC+CGG | + | chr5_3:27337680-27337699 | None:intergenic | 35.0% |
| AACACCAACAATGAATTTGG+AGG | - | chr5_3:27337771-27337790 | Msa0806850:intron | 35.0% | |
| ACACCAACAATGAATTTGGA+GGG | - | chr5_3:27337772-27337791 | Msa0806850:intron | 35.0% | |
| ATTCCCTCCAAATTCATTGT+TGG | + | chr5_3:27337778-27337797 | None:intergenic | 35.0% | |
| !! | GCTTGGTTCTCATATTTTCT+TGG | - | chr5_3:27337873-27337892 | Msa0806850:CDS | 35.0% |
| ! | GGTTCTCATATTTTCTTGGA+TGG | - | chr5_3:27337877-27337896 | Msa0806850:CDS | 35.0% |
| TGGATGGAAGTTGTTATGTT+AGG | - | chr5_3:27337893-27337912 | Msa0806850:CDS | 35.0% | |
| CGAGTATTTAGGGAGAAATA+AGG | - | chr5_3:27337936-27337955 | Msa0806850:CDS | 35.0% | |
| ! | TGAATGTAATTGGATGGACT+AGG | - | chr5_3:27338091-27338110 | Msa0806850:intron | 35.0% |
| CATAGATAAAGTTGGAGTTG+TGG | - | chr5_3:27338152-27338171 | Msa0806850:intron | 35.0% | |
| ! | TTTTCGAAAAATCAACCGTC+TGG | + | chr5_3:27338616-27338635 | None:intergenic | 35.0% |
| !! | AGACGGTTGATTTTTCGAAA+AGG | - | chr5_3:27338615-27338634 | Msa0806850:intron | 35.0% |
| !! | GACGGTTGATTTTTCGAAAA+GGG | - | chr5_3:27338616-27338635 | Msa0806850:intron | 35.0% |
| GGAAATTTAAGGAATCAGCA+TGG | - | chr5_3:27338685-27338704 | Msa0806850:intron | 35.0% | |
| AGGTTGACAATTAAAGTCAC+TGG | + | chr5_3:27338922-27338941 | None:intergenic | 35.0% | |
| CTTAAGTGTCCTTTAGGTAA+AGG | + | chr5_3:27339162-27339181 | None:intergenic | 35.0% | |
| TACCTAAAGGACACTTAAGT+TGG | - | chr5_3:27339163-27339182 | Msa0806850:intron | 35.0% | |
| AACCAACTTAAGTGTCCTTT+AGG | + | chr5_3:27339168-27339187 | None:intergenic | 35.0% | |
| !!! | TTGGTTTTGTGAGCACATTA+TGG | - | chr5_3:27339182-27339201 | Msa0806850:intron | 35.0% |
| TAGAAAGGTCTAGTGAAACT+AGG | - | chr5_3:27339369-27339388 | Msa0806850:intron | 35.0% | |
| AAGAGTAGGTAATGTCCATA+TGG | + | chr5_3:27339553-27339572 | None:intergenic | 35.0% | |
| AACCATATGGACATTGCTAA+AGG | - | chr5_3:27339650-27339669 | Msa0806850:CDS | 35.0% | |
| TAAAGGCCAATACAACATTC+TGG | - | chr5_3:27339667-27339686 | Msa0806850:CDS | 35.0% | |
| AAAGGCCAATACAACATTCT+GGG | - | chr5_3:27339668-27339687 | Msa0806850:CDS | 35.0% | |
| TGATTCCCAGAATGTTGTAT+TGG | + | chr5_3:27339676-27339695 | None:intergenic | 35.0% | |
| !! | TGTGGAGATTTTTCTAGCAA+GGG | + | chr5_3:27339723-27339742 | None:intergenic | 35.0% |
| !! | TTGTGGAGATTTTTCTAGCA+AGG | + | chr5_3:27339724-27339743 | None:intergenic | 35.0% |
| TCTCCACAAAACAAAAGTTC+TGG | - | chr5_3:27339735-27339754 | Msa0806850:CDS | 35.0% | |
| ! | CACAAAACAAAAGTTCTGGT+GGG | - | chr5_3:27339739-27339758 | Msa0806850:CDS | 35.0% |
| ATTCTAGCATCACTTTCAAC+TGG | + | chr5_3:27339795-27339814 | None:intergenic | 35.0% | |
| ATTCTCTCAACTGGAATAGA+TGG | + | chr5_3:27339856-27339875 | None:intergenic | 35.0% | |
| TTCAGCTCATGATGAATTGT+GGG | - | chr5_3:27339998-27340017 | Msa0806850:intron | 35.0% | |
| ! | GTTCTGAACTGATAAGTGAA+TGG | + | chr5_3:27340056-27340075 | None:intergenic | 35.0% |
| ATGCTTAATTCCATGCCAAA+TGG | - | chr5_3:27340135-27340154 | Msa0806850:intron | 35.0% | |
| ! | TGTTTTCTTTCCATTTGGCA+TGG | + | chr5_3:27340148-27340167 | None:intergenic | 35.0% |
| GTCAGCTATAACTATCAATG+AGG | + | chr5_3:27340274-27340293 | None:intergenic | 35.0% | |
| ACAAAATTTCTACTGTGGCT+TGG | + | chr5_3:27340341-27340360 | None:intergenic | 35.0% | |
| ! | AGCCACAGTAGAAATTTTGT+TGG | - | chr5_3:27340341-27340360 | Msa0806850:intron | 35.0% |
| CACCAACAAAATTTCTACTG+TGG | + | chr5_3:27340346-27340365 | None:intergenic | 35.0% | |
| TGGCCAAGTATAAATTCTGA+AGG | - | chr5_3:27340428-27340447 | Msa0806850:intron | 35.0% | |
| AGTGATAACTGATAACTAGC+AGG | + | chr5_3:27340466-27340485 | None:intergenic | 35.0% | |
| TTGAAACTTGCAACTTGGAA+GGG | + | chr5_3:27340531-27340550 | None:intergenic | 35.0% | |
| ! | ATCTAGAATAGGCCAAAGAT+AGG | - | chr5_3:27340560-27340579 | Msa0806850:intron | 35.0% |
| TTCAAAGGGAAACCTATCTT+TGG | + | chr5_3:27340575-27340594 | None:intergenic | 35.0% | |
| ! | ATAGGTTTCCCTTTGAAGAT+GGG | - | chr5_3:27340578-27340597 | Msa0806850:intron | 35.0% |
| ACCTAGATATATAAAAGGGG+TGG | - | chr5_3:27340604-27340623 | Msa0806850:intron | 35.0% | |
| ! | ACCACCCCTTTTATATATCT+AGG | + | chr5_3:27340608-27340627 | None:intergenic | 35.0% |
| ! | TGAGTCTCTTTTCATAGCTA+TGG | + | chr5_3:27340725-27340744 | None:intergenic | 35.0% |
| GCTATGAAAAGAGACTCATA+AGG | - | chr5_3:27340727-27340746 | Msa0806850:intron | 35.0% | |
| TCCACTTTGTTCTTACAAAG+GGG | + | chr5_3:27340778-27340797 | None:intergenic | 35.0% | |
| !! | AAAGTGGAAATTGGCTTTCA+TGG | - | chr5_3:27340790-27340809 | Msa0806850:intron | 35.0% |
| TTCACAGCTTTCATGGAAAT+TGG | - | chr5_3:27340856-27340875 | Msa0806850:intron | 35.0% | |
| CATCATTTACTACCCATTCT+GGG | - | chr5_3:27341328-27341347 | Msa0806850:intron | 35.0% | |
| GAATTTCAACAGGTGACAAA+AGG | + | chr5_3:27341408-27341427 | None:intergenic | 35.0% | |
| CGCTTCTTCAGAATATGAAT+AGG | + | chr5_3:27341461-27341480 | None:intergenic | 35.0% | |
| CACGTAGACAAAATATCAAC+AGG | + | chr5_3:27341628-27341647 | None:intergenic | 35.0% | |
| TCTACGTGCTTAACTAATCA+TGG | - | chr5_3:27341640-27341659 | Msa0806850:intron | 35.0% | |
| CTTAAGCAGAAAAAGTTTGG+TGG | - | chr5_3:27341947-27341966 | Msa0806850:CDS | 35.0% | |
| GAAATGTATCCAAGCTAACT+AGG | - | chr5_3:27342232-27342251 | Msa0806850:CDS | 35.0% | |
| ATAATCTCATCCTATCCTAC+AGG | + | chr5_3:27342395-27342414 | None:intergenic | 35.0% | |
| AGGATAGGATGAGATTATGA+TGG | - | chr5_3:27342397-27342416 | Msa0806850:intron | 35.0% | |
| GGATAGGATGAGATTATGAT+GGG | - | chr5_3:27342398-27342417 | Msa0806850:intron | 35.0% | |
| ! | CTGCATTGTAAGTCTGAAAT+TGG | - | chr5_3:27342495-27342514 | Msa0806850:intron | 35.0% |
| GGAGAACTCTTTGTTAAGAA+TGG | - | chr5_3:27342516-27342535 | Msa0806850:intron | 35.0% | |
| CCAGAAATAACATGTCAAGA+AGG | + | chr5_3:27342649-27342668 | None:intergenic | 35.0% | |
| !! | CCTTCTTGACATGTTATTTC+TGG | - | chr5_3:27342646-27342665 | Msa0806850:intron | 35.0% |
| TGGAAACCTAATATCAGACT+TGG | + | chr5_3:27342704-27342723 | None:intergenic | 35.0% | |
| AGCCAAAGACAAACTTTACT+TGG | - | chr5_3:27342752-27342771 | Msa0806850:intron | 35.0% | |
| !!! | TCTTCTTTTTTGCAGCTATG+AGG | - | chr5_3:27342914-27342933 | Msa0806850:intron | 35.0% |
| TTCTAATGTGACTTCTTGAC+TGG | - | chr5_3:27343144-27343163 | Msa0806850:intron | 35.0% | |
| ATGGTACCTCAAACTCTAAA+TGG | - | chr5_3:27343188-27343207 | Msa0806850:intron | 35.0% | |
| TAGGAAATGTATCTTGTGAG+AGG | - | chr5_3:27343272-27343291 | Msa0806850:intron | 35.0% | |
| AGGAAATGTATCTTGTGAGA+GGG | - | chr5_3:27343273-27343292 | Msa0806850:intron | 35.0% | |
| AAAGAAAATGTTAAGGGCAG+CGG | + | chr5_3:27343425-27343444 | None:intergenic | 35.0% | |
| CTACAATATATGACATGCCT+AGG | + | chr5_3:27343551-27343570 | None:intergenic | 35.0% | |
| TGCAGAAATCATGAAAGGCA+GGG | + | chr5_3:27337307-27337326 | None:intergenic | 40.0% | |
| ATGCAGAAATCATGAAAGGC+AGG | + | chr5_3:27337308-27337327 | None:intergenic | 40.0% | |
| CAAGAAGAAAACGAAGGGAA+GGG | + | chr5_3:27337355-27337374 | None:intergenic | 40.0% | |
| TCAAGAAGAAAACGAAGGGA+AGG | + | chr5_3:27337356-27337375 | None:intergenic | 40.0% | |
| GCTGTCAAGAAGAAAACGAA+GGG | + | chr5_3:27337360-27337379 | None:intergenic | 40.0% | |
| AGCTGTCAAGAAGAAAACGA+AGG | + | chr5_3:27337361-27337380 | None:intergenic | 40.0% | |
| TCTTGACAGCTTCATCTTTG+AGG | - | chr5_3:27337370-27337389 | Msa0806850:three_prime_UTR | 40.0% | |
| AGTCAGAAACTGGACAAGTT+GGG | + | chr5_3:27337622-27337641 | None:intergenic | 40.0% | |
| ACCCATTTGGCTATATACTG+AGG | - | chr5_3:27337851-27337870 | Msa0806850:CDS | 40.0% | |
| GCCTCAGTATATAGCCAAAT+GGG | + | chr5_3:27337855-27337874 | None:intergenic | 40.0% | |
| AGCCTCAGTATATAGCCAAA+TGG | + | chr5_3:27337856-27337875 | None:intergenic | 40.0% | |
| TTTGGCTATATACTGAGGCT+TGG | - | chr5_3:27337856-27337875 | Msa0806850:CDS | 40.0% | |
| TTGGAGTTGTGGATAAGACT+AGG | - | chr5_3:27338163-27338182 | Msa0806850:intron | 40.0% | |
| ! | AGGTCAAATCTAGTTGATGC+TGG | - | chr5_3:27338318-27338337 | Msa0806850:intron | 40.0% |
| AATCTGACACCCCAAACAAA+TGG | - | chr5_3:27338377-27338396 | Msa0806850:intron | 40.0% | |
| CTGCAACATATGATGAACCT+TGG | - | chr5_3:27338748-27338767 | Msa0806850:intron | 40.0% | |
| TTGAAGGGGCTGTATATGTA+TGG | - | chr5_3:27338988-27339007 | Msa0806850:intron | 40.0% | |
| AGAGACAACATGATGTGTCA+TGG | + | chr5_3:27339085-27339104 | None:intergenic | 40.0% | |
| ACAATCTCTCTGATGAGCTA+TGG | + | chr5_3:27339407-27339426 | None:intergenic | 40.0% | |
| ATAGCTCATCAGAGAGATTG+TGG | - | chr5_3:27339406-27339425 | Msa0806850:intron | 40.0% | |
| TAACTGCATTGTTGATGCCT+TGG | + | chr5_3:27339442-27339461 | None:intergenic | 40.0% | |
| GTAATGTCCATATGGTTCCT+TGG | + | chr5_3:27339545-27339564 | None:intergenic | 40.0% | |
| !!! | CCACCAGAACTTTTGTTTTG+TGG | + | chr5_3:27339741-27339760 | None:intergenic | 40.0% |
| ! | CCACAAAACAAAAGTTCTGG+TGG | - | chr5_3:27339738-27339757 | Msa0806850:CDS | 40.0% |
| ! | AAAACAAAAGTTCTGGTGGG+CGG | - | chr5_3:27339742-27339761 | Msa0806850:CDS | 40.0% |
| TCAACTGGTGCAAACTGATA+TGG | + | chr5_3:27339780-27339799 | None:intergenic | 40.0% | |
| GTTCAGCTCATGATGAATTG+TGG | - | chr5_3:27339997-27340016 | Msa0806850:intron | 40.0% | |
| ATTTCCTTCACCTATGTTCC+AGG | - | chr5_3:27340084-27340103 | Msa0806850:intron | 40.0% | |
| CAATCTATGCTAATGCTACC+TGG | + | chr5_3:27340105-27340124 | None:intergenic | 40.0% | |
| TATGCAGAGCTAGATTCCTA+AGG | + | chr5_3:27340194-27340213 | None:intergenic | 40.0% | |
| AAGTGCCCATTGATCTTTGT+CGG | - | chr5_3:27340215-27340234 | Msa0806850:intron | 40.0% | |
| ATGAAGGGAGCTTAGCTATA+AGG | + | chr5_3:27340296-27340315 | None:intergenic | 40.0% | |
| ! | AAATTTCTACTGTGGCTTGG+AGG | + | chr5_3:27340338-27340357 | None:intergenic | 40.0% |
| TTGGCCAATCAAGCTATTGA+AGG | + | chr5_3:27340415-27340434 | None:intergenic | 40.0% | |
| !! | CCTTCTGACTATAATGGACA+GGG | + | chr5_3:27340505-27340524 | None:intergenic | 40.0% |
| CCTGTCCATTATAGTCAGAA+GGG | - | chr5_3:27340503-27340522 | Msa0806850:intron | 40.0% | |
| TGAAACTTGCAACTTGGAAG+GGG | + | chr5_3:27340530-27340549 | None:intergenic | 40.0% | |
| GTTGAAACTTGCAACTTGGA+AGG | + | chr5_3:27340532-27340551 | None:intergenic | 40.0% | |
| ! | GATAGGTTTCCCTTTGAAGA+TGG | - | chr5_3:27340577-27340596 | Msa0806850:intron | 40.0% |
| TAGGTGTTCCCATCTTCAAA+GGG | + | chr5_3:27340589-27340608 | None:intergenic | 40.0% | |
| !! | ATCTTTGAGACATGGCACAT+TGG | + | chr5_3:27340632-27340651 | None:intergenic | 40.0% |
| CATAGCTATGGTGAGTATTC+TGG | + | chr5_3:27340713-27340732 | None:intergenic | 40.0% | |
| TTGTTCTTACAAAGGGGGTT+CGG | + | chr5_3:27340772-27340791 | None:intergenic | 40.0% | |
| CCACTTTGTTCTTACAAAGG+GGG | + | chr5_3:27340777-27340796 | None:intergenic | 40.0% | |
| AAACGTCTTCACAGCTTTCA+TGG | - | chr5_3:27340849-27340868 | Msa0806850:intron | 40.0% | |
| !! | ATGGAAATTGGCTTTCAGTG+TGG | - | chr5_3:27340868-27340887 | Msa0806850:intron | 40.0% |
| CTTGAAAGATTATTTGGCCG+TGG | + | chr5_3:27340916-27340935 | None:intergenic | 40.0% | |
| !! | ACTGATGTGTTTCTGGAGAT+AGG | - | chr5_3:27341224-27341243 | Msa0806850:intron | 40.0% |
| TGGTCCAAGACAAGACAAAA+AGG | + | chr5_3:27341301-27341320 | None:intergenic | 40.0% | |
| GTAGTAAATGATGCGCAGTA+TGG | + | chr5_3:27341321-27341340 | None:intergenic | 40.0% | |
| GCATCATTTACTACCCATTC+TGG | - | chr5_3:27341327-27341346 | Msa0806850:intron | 40.0% | |
| TACTTCGAAGAACCCAGAAT+GGG | + | chr5_3:27341343-27341362 | None:intergenic | 40.0% | |
| ! | TATTCTGAAGAAGCGACCAT+TGG | - | chr5_3:27341466-27341485 | Msa0806850:intron | 40.0% |
| ! | ATTCTGAAGAAGCGACCATT+GGG | - | chr5_3:27341467-27341486 | Msa0806850:intron | 40.0% |
| !! | AGAAGAGTACTTATCCCCAA+TGG | + | chr5_3:27341485-27341504 | None:intergenic | 40.0% |
| AATGGATGACCTAGTTAGCT+TGG | + | chr5_3:27342244-27342263 | None:intergenic | 40.0% | |
| !! | TTTTGCTGCTTCAAACTGAG+AGG | - | chr5_3:27342268-27342287 | Msa0806850:CDS | 40.0% |
| AAACTGAGAGGTCAGGATTA+AGG | - | chr5_3:27342280-27342299 | Msa0806850:CDS | 40.0% | |
| GAGGACATTGTGTGTATGTT+TGG | - | chr5_3:27342357-27342376 | Msa0806850:intron | 40.0% | |
| !!! | ACAGCTCTAGCGTTACTTTT+GGG | + | chr5_3:27342853-27342872 | None:intergenic | 40.0% |
| GGTGATTGACACCTTGAAAT+TGG | - | chr5_3:27342935-27342954 | Msa0806850:intron | 40.0% | |
| CAGATGCTTGTCCAATTTCA+AGG | + | chr5_3:27342949-27342968 | None:intergenic | 40.0% | |
| CTTGAAATTGGACAAGCATC+TGG | - | chr5_3:27342947-27342966 | Msa0806850:intron | 40.0% | |
| TTGGTCAAATCTGCGCAAAA+GGG | - | chr5_3:27343066-27343085 | Msa0806850:intron | 40.0% | |
| ! | GAGGTACCATTTCTTGTAGT+TGG | + | chr5_3:27343178-27343197 | None:intergenic | 40.0% |
| ATTTGCGCAGAAACGTGTAT+AGG | - | chr5_3:27343253-27343272 | Msa0806850:intron | 40.0% | |
| ! | AACAACTGACTTCCCTTGAC+TGG | - | chr5_3:27337267-27337286 | Msa0806850:three_prime_UTR | 45.0% |
| GGATTCTTGTTGCCAGTCAA+GGG | + | chr5_3:27337282-27337301 | None:intergenic | 45.0% | |
| AGGATTCTTGTTGCCAGTCA+AGG | + | chr5_3:27337283-27337302 | None:intergenic | 45.0% | |
| GAAATCATGAAAGGCAGGGT+AGG | + | chr5_3:27337303-27337322 | None:intergenic | 45.0% | |
| GGGAAGAAAAGAGCGAAGAT+AGG | + | chr5_3:27337335-27337354 | None:intergenic | 45.0% | |
| ! | TCAGAAACTGGACAAGTTGG+GGG | + | chr5_3:27337620-27337639 | None:intergenic | 45.0% |
| GTCAGAAACTGGACAAGTTG+GGG | + | chr5_3:27337621-27337640 | None:intergenic | 45.0% | |
| GAGTCAGAAACTGGACAAGT+TGG | + | chr5_3:27337623-27337642 | None:intergenic | 45.0% | |
| AGCAGGCCGAATCTTTATTC+CGG | - | chr5_3:27337658-27337677 | Msa0806850:intron | 45.0% | |
| ! | TCTAGTTGATGCTGGTTGCT+TGG | - | chr5_3:27338326-27338345 | Msa0806850:intron | 45.0% |
| ! | ATGCTGGTTGCTTGGATGAT+AGG | - | chr5_3:27338334-27338353 | Msa0806850:intron | 45.0% |
| AGGTTACATTGAGGTGTGTG+TGG | - | chr5_3:27338422-27338441 | Msa0806850:intron | 45.0% | |
| ATTTGCAGAAAGTGGCCAGA+CGG | - | chr5_3:27338598-27338617 | Msa0806850:intron | 45.0% | |
| !!! | AAATATTTTTGGGTCGGGCC+AGG | - | chr5_3:27338783-27338802 | Msa0806850:intron | 45.0% |
| !!! | AATATTTTTGGGTCGGGCCA+GGG | - | chr5_3:27338784-27338803 | Msa0806850:intron | 45.0% |
| AGAAGGGTTACAAGATTGGG+AGG | - | chr5_3:27339281-27339300 | Msa0806850:intron | 45.0% | |
| ATCTCTCTGATGAGCTATGG+TGG | + | chr5_3:27339404-27339423 | None:intergenic | 45.0% | |
| ATATGGTTCCTTGGACCACA+AGG | + | chr5_3:27339536-27339555 | None:intergenic | 45.0% | |
| TTGTGGTCCAAGGAACCATA+TGG | - | chr5_3:27339535-27339554 | Msa0806850:intron | 45.0% | |
| ATATGGTTCCTTGGACCACA+AGG | + | chr5_3:27339536-27339555 | None:intergenic | 45.0% | |
| TTGTGGTCCAAGGAACCATA+TGG | - | chr5_3:27339535-27339554 | Msa0806850:intron | 45.0% | |
| GCAATGTCCATATGGTTCCT+TGG | + | chr5_3:27339647-27339666 | None:intergenic | 45.0% | |
| GGCCTTTAGCAATGTCCATA+TGG | + | chr5_3:27339655-27339674 | None:intergenic | 45.0% | |
| GCAAGGGCTGGAATAACTTA+TGG | + | chr5_3:27339707-27339726 | None:intergenic | 45.0% | |
| !! | GAGATTTTTCTAGCAAGGGC+TGG | + | chr5_3:27339719-27339738 | None:intergenic | 45.0% |
| GCTAATGCTACCTGGAACAT+AGG | + | chr5_3:27340097-27340116 | None:intergenic | 45.0% | |
| CTGCTATGTTGCACCTATGT+TGG | + | chr5_3:27340251-27340270 | None:intergenic | 45.0% | |
| GCTAAGCTCCCTTCATTAAG+TGG | - | chr5_3:27340300-27340319 | Msa0806850:intron | 45.0% | |
| !! | TATAATGGACAGGGTACAGC+TGG | + | chr5_3:27340496-27340515 | None:intergenic | 45.0% |
| CCCTGTCCATTATAGTCAGA+AGG | - | chr5_3:27340502-27340521 | Msa0806850:intron | 45.0% | |
| !! | CCCTTCTGACTATAATGGAC+AGG | + | chr5_3:27340506-27340525 | None:intergenic | 45.0% |
| CTAGGTGTTCCCATCTTCAA+AGG | + | chr5_3:27340590-27340609 | None:intergenic | 45.0% | |
| TCGGTAAGTGCAAATGTGGA+AGG | + | chr5_3:27340753-27340772 | None:intergenic | 45.0% | |
| CCCCCTTTGTAAGAACAAAG+TGG | - | chr5_3:27340774-27340793 | Msa0806850:intron | 45.0% | |
| !! | GTGGAAATTGGCTTTCATGG+AGG | - | chr5_3:27340793-27340812 | Msa0806850:intron | 45.0% |
| ! | TTGGCTTTCAGTGTGGATTC+CGG | - | chr5_3:27340875-27340894 | Msa0806850:intron | 45.0% |
| ! | TATTTGGCCGTGGAAGCTTT+TGG | + | chr5_3:27340906-27340925 | None:intergenic | 45.0% |
| ! | AGTTTAGGGCTTGATCAGAG+AGG | - | chr5_3:27340988-27341007 | Msa0806850:intron | 45.0% |
| ! | GCACTCAGGTTTGTTCGAAT+TGG | - | chr5_3:27341173-27341192 | Msa0806850:intron | 45.0% |
| TGATTCTGCACCGCTGTATA+TGG | + | chr5_3:27341258-27341277 | None:intergenic | 45.0% | |
| GTACTTCGAAGAACCCAGAA+TGG | + | chr5_3:27341344-27341363 | None:intergenic | 45.0% | |
| TCTGGGTTCTTCGAAGTACA+AGG | - | chr5_3:27341345-27341364 | Msa0806850:intron | 45.0% | |
| ! | TTCTGAAGAAGCGACCATTG+GGG | - | chr5_3:27341468-27341487 | Msa0806850:intron | 45.0% |
| CATTTGGCAGTTAGGCTAAG+AGG | - | chr5_3:27342338-27342357 | Msa0806850:intron | 45.0% | |
| !! | GACAGCTCTAGCGTTACTTT+TGG | + | chr5_3:27342854-27342873 | None:intergenic | 45.0% |
| GAAATTGGACAAGCATCTGG+TGG | - | chr5_3:27342950-27342969 | Msa0806850:intron | 45.0% | |
| GTTGGTCAAATCTGCGCAAA+AGG | - | chr5_3:27343065-27343084 | Msa0806850:intron | 45.0% | |
| GCAAATGCATGTAGCAAGGT+AGG | + | chr5_3:27343239-27343258 | None:intergenic | 45.0% | |
| TGTTTATCCAAGCAGGCCCT+TGG | - | chr5_3:27337543-27337562 | Msa0806850:intron | 50.0% | |
| AAGCAGGCCCTTGGTCTATA+GGG | - | chr5_3:27337552-27337571 | Msa0806850:intron | 50.0% | |
| GCTAACGCCCTATAGACCAA+GGG | + | chr5_3:27337562-27337581 | None:intergenic | 50.0% | |
| TGCTAACGCCCTATAGACCA+AGG | + | chr5_3:27337563-27337582 | None:intergenic | 50.0% | |
| GGCCGAATCTTTATTCCGGT+AGG | - | chr5_3:27337662-27337681 | Msa0806850:intron | 50.0% | |
| TCTGGCCATATCTGATTCCC+TGG | + | chr5_3:27338804-27338823 | None:intergenic | 50.0% | |
| GGGCTGTATATGTATGGTGC+TGG | - | chr5_3:27338994-27339013 | Msa0806850:intron | 50.0% | |
| ATTGTGGCCATGCTTAGCCA+AGG | - | chr5_3:27339422-27339441 | Msa0806850:intron | 50.0% | |
| GTTGATGCCTTGGCTAAGCA+TGG | + | chr5_3:27339432-27339451 | None:intergenic | 50.0% | |
| CCATCTCCATGCAATTGCTC+CGG | - | chr5_3:27339505-27339524 | Msa0806850:intron | 50.0% | |
| CCATCTCCATGCAATTGCTC+CGG | - | chr5_3:27339505-27339524 | Msa0806850:intron | 50.0% | |
| GCTACCTGGAACATAGGTGA+AGG | + | chr5_3:27340091-27340110 | None:intergenic | 50.0% | |
| GGGGTCCCTTCTGACTATAA+TGG | + | chr5_3:27340511-27340530 | None:intergenic | 50.0% | |
| ! | GGGTTCGGTAAGTGCAAATG+TGG | + | chr5_3:27340757-27340776 | None:intergenic | 50.0% |
| CCAACAGAACGCAGCGATTT+CGG | - | chr5_3:27341016-27341035 | Msa0806850:intron | 50.0% | |
| CACATCAGTAGCGTCGTGAA+GGG | + | chr5_3:27341213-27341232 | None:intergenic | 50.0% | |
| ACACATCAGTAGCGTCGTGA+AGG | + | chr5_3:27341214-27341233 | None:intergenic | 50.0% | |
| CGACGCTACTGATGTGTTTC+TGG | - | chr5_3:27341217-27341236 | Msa0806850:intron | 50.0% | |
| CTGCTTCAAACTGAGAGGTC+AGG | - | chr5_3:27342273-27342292 | Msa0806850:CDS | 50.0% | |
| !! | ATTGGTGGGTGCTGATGCTT+CGG | - | chr5_3:27343036-27343055 | Msa0806850:intron | 50.0% |
| CTGATGCTTCGGATGCTTGT+TGG | - | chr5_3:27343047-27343066 | Msa0806850:intron | 50.0% | |
| CTGCGCAAATGCATGTAGCA+AGG | + | chr5_3:27343243-27343262 | None:intergenic | 50.0% | |
| CTATAGACCAAGGGCCTGCT+TGG | + | chr5_3:27337553-27337572 | None:intergenic | 55.0% | |
| CAAGCAGGCCCTTGGTCTAT+AGG | - | chr5_3:27337551-27337570 | Msa0806850:intron | 55.0% | |
| ! | GACAAGTTGGGGGAGTAGAG+AGG | + | chr5_3:27337610-27337629 | None:intergenic | 55.0% |
| TCGGGCCAGGGAATCAGATA+TGG | - | chr5_3:27338796-27338815 | Msa0806850:intron | 55.0% | |
| CCGGAGCAATTGCATGGAGA+TGG | + | chr5_3:27339508-27339527 | None:intergenic | 55.0% | |
| GAATCGCCGGAGCAATTGCA+TGG | + | chr5_3:27339514-27339533 | None:intergenic | 55.0% | |
| ATTGCTCCGGCGATTCCTTG+TGG | - | chr5_3:27339518-27339537 | Msa0806850:intron | 55.0% | |
| CTTGGACCACAAGGAATCGC+CGG | + | chr5_3:27339527-27339546 | None:intergenic | 55.0% | |
| CCGGAGCAATTGCATGGAGA+TGG | + | chr5_3:27339508-27339527 | None:intergenic | 55.0% | |
| GAATCGCCGGAGCAATTGCA+TGG | + | chr5_3:27339514-27339533 | None:intergenic | 55.0% | |
| ATTGCTCCGGCGATTCCTTG+TGG | - | chr5_3:27339518-27339537 | Msa0806850:intron | 55.0% | |
| CTTGGACCACAAGGAATCGC+CGG | + | chr5_3:27339527-27339546 | None:intergenic | 55.0% | |
| GCTGTGAAGACGTTTGCGCA+TGG | + | chr5_3:27340844-27340863 | None:intergenic | 55.0% | |
| GCTTTCAGTGTGGATTCCGG+CGG | - | chr5_3:27340878-27340897 | Msa0806850:intron | 55.0% | |
| CCGAAATCGCTGCGTTCTGT+TGG | + | chr5_3:27341019-27341038 | None:intergenic | 55.0% | |
| CGGCGATTCCTTGTGGTCCA+AGG | - | chr5_3:27339525-27339544 | Msa0806850:intron | 60.0% | |
| CGGCGATTCCTTGTGGTCCA+AGG | - | chr5_3:27339525-27339544 | Msa0806850:intron | 60.0% | |
| !!! | GTGGAAGCTTTTGGCTCCGC+CGG | + | chr5_3:27340897-27340916 | None:intergenic | 60.0% |
| GGCGGAGCCAAAAGCTTCCA+CGG | - | chr5_3:27340896-27340915 | Msa0806850:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 27337254 | 27343699 | 27337254 | ID=Msa0806850;Name=Msa0806850 |
| chr5_3 | mRNA | 27337254 | 27343699 | 27337254 | ID=Msa0806850-mRNA-1;Parent=Msa0806850;Name=Msa0806850-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|0.8|0.83|1|0.4|0.5|6|214|265 |
| chr5_3 | exon | 27337254 | 27337499 | 27337254 | ID=Msa0806850-mRNA-1:exon:9735;Parent=Msa0806850-mRNA-1 |
| chr5_3 | exon | 27337840 | 27338024 | 27337840 | ID=Msa0806850-mRNA-1:exon:9734;Parent=Msa0806850-mRNA-1 |
| chr5_3 | exon | 27339587 | 27339772 | 27339587 | ID=Msa0806850-mRNA-1:exon:9733;Parent=Msa0806850-mRNA-1 |
| chr5_3 | exon | 27341817 | 27341972 | 27341817 | ID=Msa0806850-mRNA-1:exon:9732;Parent=Msa0806850-mRNA-1 |
| chr5_3 | exon | 27342118 | 27342347 | 27342118 | ID=Msa0806850-mRNA-1:exon:9731;Parent=Msa0806850-mRNA-1 |
| chr5_3 | exon | 27343691 | 27343699 | 27343691 | ID=Msa0806850-mRNA-1:exon:9730;Parent=Msa0806850-mRNA-1 |
| chr5_3 | CDS | 27343691 | 27343699 | 27343691 | ID=Msa0806850-mRNA-1:cds;Parent=Msa0806850-mRNA-1 |
| chr5_3 | CDS | 27342118 | 27342347 | 27342118 | ID=Msa0806850-mRNA-1:cds;Parent=Msa0806850-mRNA-1 |
| chr5_3 | CDS | 27341817 | 27341972 | 27341817 | ID=Msa0806850-mRNA-1:cds;Parent=Msa0806850-mRNA-1 |
| chr5_3 | CDS | 27339587 | 27339772 | 27339587 | ID=Msa0806850-mRNA-1:cds;Parent=Msa0806850-mRNA-1 |
| chr5_3 | CDS | 27337840 | 27338024 | 27337840 | ID=Msa0806850-mRNA-1:cds;Parent=Msa0806850-mRNA-1 |
| chr5_3 | CDS | 27337468 | 27337499 | 27337468 | ID=Msa0806850-mRNA-1:cds;Parent=Msa0806850-mRNA-1 |
| chr5_3 | three_prime_UTR | 27337254 | 27337467 | 27337254 | ID=Msa0806850-mRNA-1:three_prime_utr;Parent=Msa0806850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
