AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0900630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0900630 MtrunA17_Chr6g0486801 89.865 148 14 1 1 148 1 147 1.81e-88 254
Msa0900630 MtrunA17_Chr7g0265411 90.164 122 12 0 1 122 1 122 4.28e-80 233
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0900630 AT3G18760.1 64.122 131 46 1 1 131 1 130 6.77e-56 172
Msa0900630 AT3G18760.2 59.701 134 48 2 1 134 1 128 9.59e-50 156

Find 43 sgRNAs with CRISPR-Local

Find 615 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAGCTCTTTGTTGATTTC+GGG 0.181534 6_1:+96849536 None:intergenic
ATGCAGCTCTTTGTTGATTT+CGG 0.208605 6_1:+96849535 None:intergenic
GTCACTGAGGTTAAGAGTTT+TGG 0.239764 6_1:-96851029 Msa0900630:CDS
TAGATAATTTCTTTATAGTT+TGG 0.260210 6_1:-96849143 Msa0900630:three_prime_UTR
TCATGCTCACTTGCATCATT+TGG 0.288871 6_1:+96849567 None:intergenic
CTCTAATTGGTTTAGTTTCA+AGG 0.335670 6_1:-96851085 Msa0900630:CDS
AAATAAAGTGAACTAAAATA+TGG 0.363176 6_1:-96849321 Msa0900630:exon
TTGGTTTAGTTTCAAGGATT+GGG 0.366475 6_1:-96851079 Msa0900630:CDS
AACATGTGTGTAAAAGAAAT+GGG 0.380053 6_1:-96851055 Msa0900630:CDS
ATTGGTTTAGTTTCAAGGAT+TGG 0.385789 6_1:-96851080 Msa0900630:CDS
GCGTGATGGCAGATTCTATC+AGG 0.387307 6_1:-96850976 Msa0900630:intron
GTAGTTTGTCCTCCTTGTTT+AGG 0.396913 6_1:+96849510 None:intergenic
GGAACGATGCAGTTGGGTTA+TGG 0.403450 6_1:-96851008 Msa0900630:CDS
TTAGAAGGCAATATATTTAG+TGG 0.427305 6_1:+96848998 None:intergenic
ACTATCAATAAGCACATGTT+TGG 0.443485 6_1:+96849236 None:intergenic
CAGTTTACTAAACATCTTCA+AGG 0.445754 6_1:+96849184 None:intergenic
AAACATGTGTGTAAAAGAAA+TGG 0.446983 6_1:-96851056 Msa0900630:CDS
CAAACTACTGCGTTGGCTAC+TGG 0.454974 6_1:-96849495 Msa0900630:CDS
AACAAAAGCATGCAATCATA+AGG 0.460708 6_1:+96851131 None:intergenic
GTTGATACTATAGTGTTAAA+CGG 0.467880 6_1:+96860834 None:intergenic
GTATCACTATCCTCGCCATC+AGG 0.482219 6_1:+96849386 None:intergenic
CTTGAGTTCATGGGAGATGA+AGG 0.503780 6_1:-96849446 Msa0900630:CDS
ATGATTGATTCACAAATGTA+CGG 0.519292 6_1:-96849116 Msa0900630:three_prime_UTR
AACTTATGCCACCAGGTGAT+CGG 0.520839 6_1:+96849065 None:intergenic
AAAATTGGGCTTGAGTTCAT+GGG 0.544552 6_1:-96849455 Msa0900630:CDS
TCTGAAATAAATAGACCTGA+TGG 0.565799 6_1:-96849401 Msa0900630:CDS
CTTGAGCTAATCCGATCACC+TGG 0.575409 6_1:-96849076 Msa0900630:three_prime_UTR
TTGTTTGTTTCCATTAGGAG+AGG 0.579555 6_1:-96849284 Msa0900630:three_prime_UTR
AGGAGGACAAACTACTGCGT+TGG 0.582013 6_1:-96849502 Msa0900630:CDS
ACTCCGGCGAGCTCAGTAGA+CGG 0.588707 6_1:+96860791 Msa0900650:CDS
AGATATCAACTTATGCCACC+AGG 0.617848 6_1:+96849058 None:intergenic
AATAAATAGACCTGATGGCG+AGG 0.631134 6_1:-96849396 Msa0900630:CDS
AAGAAATGGGGTTGTCACTG+AGG 0.631658 6_1:-96851042 Msa0900630:CDS
GGCGAGGATAGTGATACAGA+CGG 0.636843 6_1:-96849380 Msa0900630:CDS
TCTCCGTCTACTGAGCTCGC+CGG 0.639520 6_1:-96860794 Msa0900630:five_prime_UTR
ATGAACGATGATGATAACTC+CGG 0.654481 6_1:+96860775 Msa0900650:CDS
AAAAGCATGCAATCATAAGG+TGG 0.660043 6_1:+96851134 None:intergenic
AATGATGCAAGTGAGCATGA+TGG 0.687340 6_1:-96849564 Msa0900630:CDS
ACATGTGTGTAAAAGAAATG+GGG 0.688446 6_1:-96851054 Msa0900630:CDS
GTATCAACTCAACAGCGCTG+TGG 0.689577 6_1:-96860819 Msa0900630:five_prime_UTR
AGAGCTGCATTACCTAAACA+AGG 0.691182 6_1:-96849522 Msa0900630:CDS
GAGCTAATCCGATCACCTGG+TGG 0.701855 6_1:-96849073 Msa0900630:three_prime_UTR
GCTGCATTACCTAAACAAGG+AGG 0.778109 6_1:-96849519 Msa0900630:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATTTTTTTTTTATTTTT+TGG - chr6_1:96857038-96857057 Msa0900630:intron 0.0%
!! AAATAAATATATCAAGATAT+AGG - chr6_1:96849934-96849953 Msa0900630:intron 10.0%
!! TATATAAATATAAACAACAT+AGG + chr6_1:96850356-96850375 None:intergenic 10.0%
!! AAGAAGTAAAAAAAAAAATT+AGG - chr6_1:96852942-96852961 Msa0900630:intron 10.0%
!!! AAATTTAGATACATTTTTTT+AGG + chr6_1:96852997-96853016 None:intergenic 10.0%
!!! TTGAAATTTTATTATTAAAG+AGG + chr6_1:96853081-96853100 None:intergenic 10.0%
!!! TTTTTAAATGTGATTTTTTT+AGG - chr6_1:96853165-96853184 Msa0900630:intron 10.0%
!!! TTTTAAATGTGATTTTTTTA+GGG - chr6_1:96853166-96853185 Msa0900630:intron 10.0%
!!! TTTTTTTAACATATAACAAT+CGG - chr6_1:96853491-96853510 Msa0900630:intron 10.0%
!!! ACTAAATATTAATTTTCAAA+TGG + chr6_1:96853747-96853766 None:intergenic 10.0%
!!! TGACTTTTTTTTAATATTTA+CGG + chr6_1:96856288-96856307 None:intergenic 10.0%
!!! GATATAATATTTTTTTATCA+GGG + chr6_1:96856525-96856544 None:intergenic 10.0%
!!! TGATATAATATTTTTTTATC+AGG + chr6_1:96856526-96856545 None:intergenic 10.0%
!!! ATATTTTTTTATATTGCAAA+TGG + chr6_1:96856744-96856763 None:intergenic 10.0%
!!! TTTTATATAGGAAAATTTTT+TGG + chr6_1:96856772-96856791 None:intergenic 10.0%
!!! ATATTTTTTGGATTTTATAT+AGG + chr6_1:96856784-96856803 None:intergenic 10.0%
!!! ATACAAAAAATAAGTTATTT+TGG - chr6_1:96857101-96857120 Msa0900630:intron 10.0%
!!! TTTTTTTTTTTTGGATTTTT+TGG + chr6_1:96857717-96857736 Msa0900650:CDS 10.0%
!!! AATCGTTTTTTTTTTTTTTT+TGG + chr6_1:96857726-96857745 Msa0900650:CDS 10.0%
!! TTAAATAGATTATTTGTATT+TGG - chr6_1:96859482-96859501 Msa0900630:intron 10.0%
!! AAAAAAAAAAATACATTAGA+AGG + chr6_1:96860837-96860856 None:intergenic 10.0%
!!! ATTTTTTTTTTTTTTTGAAG+AGG - chr6_1:96860845-96860864 Msa0900630:five_prime_UTR 10.0%
!! AGCTTATATTACATTTAAAT+CGG + chr6_1:96849175-96849194 None:intergenic 15.0%
!!! CAATGTTCTTTTAAATTTAT+TGG - chr6_1:96849496-96849515 Msa0900630:CDS 15.0%
!! TCAATACATAATACTAATAT+AGG - chr6_1:96850545-96850564 Msa0900630:intron 15.0%
!!! CTTTAAAAAAAAACTAATAG+AGG - chr6_1:96850685-96850704 Msa0900630:intron 15.0%
!!! GTATTAATATTTACTTTTTG+TGG - chr6_1:96850717-96850736 Msa0900630:intron 15.0%
!!! CTTTAAAAAAAAACTAATAG+AGG - chr6_1:96850685-96850704 Msa0900630:intron 15.0%
!!! GTATTAATATTTACTTTTTG+TGG - chr6_1:96850717-96850736 Msa0900630:intron 15.0%
!!! ACTTTTTTCAATTTTACATT+TGG - chr6_1:96851954-96851973 Msa0900630:intron 15.0%
!!! GAAAAAGTGTATATAAATAA+AGG - chr6_1:96852208-96852227 Msa0900630:intron 15.0%
!! TCTCATACAAAATTTATTTA+TGG + chr6_1:96852453-96852472 None:intergenic 15.0%
!! TGTATAAGAGTTTATATTTA+TGG + chr6_1:96852625-96852644 None:intergenic 15.0%
!!! TAATTTGTCTTAAAATATGA+AGG - chr6_1:96852698-96852717 Msa0900630:intron 15.0%
!! TAAATGAACTAAATGTTAAA+TGG + chr6_1:96853023-96853042 None:intergenic 15.0%
!!! ATAAGTTTTAAATAAGACAA+AGG - chr6_1:96853392-96853411 Msa0900630:intron 15.0%
!!! TTTTTTAACATATAACAATC+GGG - chr6_1:96853492-96853511 Msa0900630:intron 15.0%
!!! ATGATTAGAGATATTTTTTT+TGG + chr6_1:96853559-96853578 None:intergenic 15.0%
!!! GATTAGTAAAAAAATCATTT+TGG + chr6_1:96853587-96853606 None:intergenic 15.0%
!! AATAATAACTCAATAATACT+TGG - chr6_1:96853639-96853658 Msa0900630:intron 15.0%
!!! ACTTTTTGTAATTTTACATT+TGG - chr6_1:96855735-96855754 Msa0900630:intron 15.0%
!! TTAAGAAGATGTATAAATAA+AGG - chr6_1:96855978-96855997 Msa0900630:intron 15.0%
!!! TCTGATGATTTTTTTTTTTT+TGG - chr6_1:96856588-96856607 Msa0900630:intron 15.0%
!!! TGATTTTAGAATTTAAGAAT+TGG + chr6_1:96857258-96857277 None:intergenic 15.0%
!!! GCATTTTCATATAAAAAATA+GGG + chr6_1:96857332-96857351 None:intergenic 15.0%
!!! AGCATTTTCATATAAAAAAT+AGG + chr6_1:96857333-96857352 None:intergenic 15.0%
!! ATCTAAAAGAAGAAAAAAAA+TGG + chr6_1:96857475-96857494 None:intergenic 15.0%
!!! GAAAATTAAATTTTTAACTG+AGG + chr6_1:96857661-96857680 None:intergenic 15.0%
!! AGCTTATATTACATTTAAAT+CGG + chr6_1:96849175-96849194 None:intergenic 15.0%
!!! TCATTTTCTCAAATTATTAT+CGG - chr6_1:96858296-96858315 Msa0900630:intron 15.0%
!! AATAAATAAATAAATCATGC+AGG + chr6_1:96859058-96859077 Msa0900650:intron 15.0%
!! TATAAAAATAGAATTTGACA+TGG - chr6_1:96859553-96859572 Msa0900630:intron 15.0%
!!! TGTTTTTATAAACTATCTTA+AGG - chr6_1:96859629-96859648 Msa0900630:intron 15.0%
!!! TTCTATTTTTTAATGAATGT+AGG - chr6_1:96860226-96860245 Msa0900630:intron 15.0%
!!! TCTATTTTTTAATGAATGTA+GGG - chr6_1:96860227-96860246 Msa0900630:intron 15.0%
!! AAATAAAGTGAACTAAAATA+TGG - chr6_1:96860496-96860515 Msa0900630:intron 15.0%
!! TAGATAATTTCTTTATAGTT+TGG - chr6_1:96860674-96860693 Msa0900630:intron 15.0%
!!! AATTTATTGGTTAACTTGTT+AGG - chr6_1:96849509-96849528 Msa0900630:CDS 20.0%
!!! TTTTTTTGAACAAGCAAAAA+TGG + chr6_1:96850383-96850402 None:intergenic 20.0%
!! AAAAAAATGTTACAGAAACA+CGG - chr6_1:96850399-96850418 Msa0900630:intron 20.0%
!!! AATATTTACTTTTTGTGGTT+TGG - chr6_1:96850722-96850741 Msa0900630:intron 20.0%
!!! ATCGATTTACGATTTTATTT+TGG - chr6_1:96850849-96850868 Msa0900630:intron 20.0%
!!! TTTACGATTTTATTTTGGAT+CGG - chr6_1:96850854-96850873 Msa0900630:intron 20.0%
!!! AATATTTACTTTTTGTGGTT+TGG - chr6_1:96850722-96850741 Msa0900630:intron 20.0%
!!! ATCGATTTACGATTTTATTT+TGG - chr6_1:96850849-96850868 Msa0900630:intron 20.0%
!!! TTTACGATTTTATTTTGGAT+CGG - chr6_1:96850854-96850873 Msa0900630:intron 20.0%
!! ATCATATAGATTATCAATAG+AGG - chr6_1:96851594-96851613 Msa0900630:intron 20.0%
!! TTTGATAGATAAAATATGCA+AGG + chr6_1:96852070-96852089 None:intergenic 20.0%
!!! TGGAGTTTTTTAAATGTTTA+CGG + chr6_1:96852433-96852452 None:intergenic 20.0%
!! CAAATTAGTAGTATTAATAG+AGG + chr6_1:96852685-96852704 None:intergenic 20.0%
!! AATGAAGAAAAATGAAATGA+AGG + chr6_1:96852842-96852861 None:intergenic 20.0%
!!! AGTTTAATTTAAATTGTGCT+TGG - chr6_1:96852896-96852915 Msa0900630:intron 20.0%
!!! TCTTTGAAATTTTAAAGAGA+AGG + chr6_1:96852926-96852945 None:intergenic 20.0%
!! AAAAAAAAAATTAGGCCAAA+TGG - chr6_1:96852950-96852969 Msa0900630:intron 20.0%
!! TTATTATTAAAGAGGATTGA+TGG + chr6_1:96853073-96853092 None:intergenic 20.0%
!!! TTTTAGGGAATGAATTTTTT+TGG - chr6_1:96853181-96853200 Msa0900630:intron 20.0%
!!! TTTAGGGAATGAATTTTTTT+GGG - chr6_1:96853182-96853201 Msa0900630:intron 20.0%
!!! AAAAAGAAAGAGACATTTTT+TGG + chr6_1:96853527-96853546 None:intergenic 20.0%
!!! ATTTATCAAGTAATTTGTTG+GGG + chr6_1:96854522-96854541 Msa0900640:CDS 20.0%
!!! GATTTATCAAGTAATTTGTT+GGG + chr6_1:96854523-96854542 Msa0900640:CDS 20.0%
!!! AGATTTATCAAGTAATTTGT+TGG + chr6_1:96854524-96854543 Msa0900640:CDS 20.0%
!! TATAAATAAAGGATTGAGAA+AGG - chr6_1:96855989-96856008 Msa0900630:intron 20.0%
!! TGTAAAAAAATGTCTTTGAT+AGG + chr6_1:96856373-96856392 None:intergenic 20.0%
!!! ATCTGATGAAAATTTTGAAA+TGG - chr6_1:96856617-96856636 Msa0900630:intron 20.0%
!!! CAAATGGATTCTATATTTTT+TGG + chr6_1:96856796-96856815 None:intergenic 20.0%
!! AATTTATAGGGGAAAAAATT+TGG + chr6_1:96856853-96856872 None:intergenic 20.0%
!! ATTATGTTGTAGTTTAGTAA+AGG - chr6_1:96857152-96857171 Msa0900630:intron 20.0%
!! TTGTATTATAAAAGTCGATT+TGG + chr6_1:96857428-96857447 None:intergenic 20.0%
!!! AATTTATTTTGGATTTTGAG+GGG + chr6_1:96857768-96857787 Msa0900650:CDS 20.0%
!!! GAATTTATTTTGGATTTTGA+GGG + chr6_1:96857769-96857788 Msa0900650:CDS 20.0%
!!! AGAATTTATTTTGGATTTTG+AGG + chr6_1:96857770-96857789 Msa0900650:CDS 20.0%
!!! CTATACGATAGAATTTATTT+TGG + chr6_1:96857779-96857798 Msa0900650:CDS 20.0%
!! AAAATTGAAAGCAAAAATGA+CGG + chr6_1:96858044-96858063 Msa0900650:CDS 20.0%
!! TTTAATGTAATTACATTCGT+CGG + chr6_1:96858271-96858290 Msa0900650:CDS 20.0%
!! TAGAGAATTTCAATCAAATA+CGG + chr6_1:96859256-96859275 Msa0900650:intron 20.0%
!! ATAGTTTATAAAAACAGTGT+AGG + chr6_1:96859625-96859644 Msa0900650:intron 20.0%
!!! AGTCTTTTAGATTTATAACA+TGG + chr6_1:96859721-96859740 Msa0900650:intron 20.0%
! GTTGATACTATAGTGTTAAA+CGG + chr6_1:96848986-96849005 None:intergenic 25.0%
!!! CATATATTTGTTTTCTGTCA+TGG - chr6_1:96849138-96849157 Msa0900630:three_prime_UTR 25.0%
! TTCTATTCAAGTGTAAGTAA+TGG + chr6_1:96849242-96849261 None:intergenic 25.0%
! ATTACTTACACTTGAATAGA+AGG - chr6_1:96849241-96849260 Msa0900630:three_prime_UTR 25.0%
! AGTTGAAAACAACTTATCAA+CGG + chr6_1:96849755-96849774 None:intergenic 25.0%
!!! TTTGCAAATTGGTTTTTGAA+GGG + chr6_1:96849980-96849999 None:intergenic 25.0%
! CAAATTAAACCGCATATATT+TGG + chr6_1:96850226-96850245 None:intergenic 25.0%
! CAAATATATGCGGTTTAATT+TGG - chr6_1:96850224-96850243 Msa0900630:intron 25.0%
!!! GTTTAATTTGGATCAGTTTT+TGG - chr6_1:96850236-96850255 Msa0900630:intron 25.0%
! AACACGGTAAAATAATAAGT+TGG - chr6_1:96850415-96850434 Msa0900630:intron 25.0%
! CACATATAATTGTAGATCAA+TGG + chr6_1:96851384-96851403 None:intergenic 25.0%
! CATTGATCTACAATTATATG+TGG - chr6_1:96851382-96851401 Msa0900630:intron 25.0%
!!! ATCTTTTGAAAACTTTGTTG+AGG + chr6_1:96851461-96851480 None:intergenic 25.0%
!! TCAACAAAGTTTTCAAAAGA+TGG - chr6_1:96851460-96851479 Msa0900630:intron 25.0%
!! AGTTTTCAAAAGATGGAAAA+TGG - chr6_1:96851467-96851486 Msa0900630:intron 25.0%
!!! AACATTTCTTCCTTTTTCAT+TGG - chr6_1:96851703-96851722 Msa0900630:intron 25.0%
!!! AGCATTTTTAAGATTCGTTA+TGG + chr6_1:96852130-96852149 None:intergenic 25.0%
! ATTATCTACTCAAATTCACT+CGG + chr6_1:96852161-96852180 None:intergenic 25.0%
!!! AGAGTGTTGATTTAAAAAGA+AGG - chr6_1:96852186-96852205 Msa0900630:intron 25.0%
!!! GTGGAGTTATTTAATTTTTC+CGG + chr6_1:96852381-96852400 None:intergenic 25.0%
! ACGAGAACAAAATTTATTTG+TGG + chr6_1:96852400-96852419 None:intergenic 25.0%
!! GTATTAATAGAGGTATGTTT+AGG + chr6_1:96852675-96852694 None:intergenic 25.0%
!!! TGAAATTTTAAAGAGAAGGT+AGG + chr6_1:96852922-96852941 None:intergenic 25.0%
!!! ATTCCTTTTTTTTTCTTCTG+AGG - chr6_1:96853136-96853155 Msa0900630:intron 25.0%
! ATACCTCAGAAGAAAAAAAA+AGG + chr6_1:96853142-96853161 None:intergenic 25.0%
! ACTATGTTAAATATCTATCC+AGG - chr6_1:96853229-96853248 Msa0900630:intron 25.0%
! CTATGTTAAATATCTATCCA+GGG - chr6_1:96853230-96853249 Msa0900630:intron 25.0%
!! TTTTACTAATCAACGACAAA+CGG - chr6_1:96853596-96853615 Msa0900630:intron 25.0%
! GACTCATGTTTAAAAATACA+TGG - chr6_1:96853675-96853694 Msa0900630:intron 25.0%
! AAAGTAGTCAACAAATAACA+TGG - chr6_1:96853971-96853990 Msa0900630:intron 25.0%
! TGTTTATGTTTAGTGATCAT+GGG + chr6_1:96854051-96854070 Msa0900640:CDS 25.0%
! TTGTTTATGTTTAGTGATCA+TGG + chr6_1:96854052-96854071 Msa0900640:CDS 25.0%
! GAAAAGAAATGCATGTAAAA+AGG - chr6_1:96854080-96854099 Msa0900630:intron 25.0%
! ATCTTGTAAAAAGTAGAACA+CGG - chr6_1:96854540-96854559 Msa0900630:intron 25.0%
!! AATAAATCAATTGATGATCG+TGG + chr6_1:96854630-96854649 Msa0900640:CDS 25.0%
! AACAAAATTTAGAGAGCAAA+AGG - chr6_1:96854768-96854787 Msa0900630:intron 25.0%
!! ATTCCCAAAAGAAATTTTTG+TGG - chr6_1:96854974-96854993 Msa0900630:intron 25.0%
!! TTCCCAAAAGAAATTTTTGT+GGG - chr6_1:96854975-96854994 Msa0900630:intron 25.0%
!! AACCCACAAAAATTTCTTTT+GGG + chr6_1:96854980-96854999 Msa0900640:CDS 25.0%
!! AAACCCACAAAAATTTCTTT+TGG + chr6_1:96854981-96855000 Msa0900640:CDS 25.0%
! AAAGATTGCTGAGAAAAATA+TGG + chr6_1:96855005-96855024 Msa0900640:CDS 25.0%
! CATATATAATTGCAGAACAA+TGG + chr6_1:96855084-96855103 None:intergenic 25.0%
! CATTGTTCTGCAATTATATA+TGG - chr6_1:96855082-96855101 Msa0900630:intron 25.0%
!! AACCTTTCTTTATTTGTCAA+TGG - chr6_1:96855484-96855503 Msa0900630:intron 25.0%
!!! TTATATTGATTTACTCTCGT+TGG + chr6_1:96856687-96856706 None:intergenic 25.0%
! TGCAAATGTTATATTGCAAA+TGG + chr6_1:96856812-96856831 None:intergenic 25.0%
! TGAGGTAAACGTAATTTATA+GGG + chr6_1:96856865-96856884 None:intergenic 25.0%
! TTGAGGTAAACGTAATTTAT+AGG + chr6_1:96856866-96856885 None:intergenic 25.0%
!! TTTTTCCAATTTTGTCATTG+AGG + chr6_1:96856883-96856902 None:intergenic 25.0%
! GAATTTGTGCTAATATAGTT+CGG + chr6_1:96857549-96857568 None:intergenic 25.0%
! ATACATGTTACAAACAACTT+TGG + chr6_1:96857571-96857590 None:intergenic 25.0%
! GTTGATACTATAGTGTTAAA+CGG + chr6_1:96848986-96849005 None:intergenic 25.0%
!!! CATATATTTGTTTTCTGTCA+TGG - chr6_1:96849138-96849157 Msa0900630:three_prime_UTR 25.0%
! TTCTATTCAAGTGTAAGTAA+TGG + chr6_1:96849242-96849261 None:intergenic 25.0%
! ATTACTTACACTTGAATAGA+AGG - chr6_1:96849241-96849260 Msa0900630:three_prime_UTR 25.0%
! TCATTGAACAAATTGAGAAA+AGG + chr6_1:96858246-96858265 Msa0900650:CDS 25.0%
! ATGACATAACAAGTTAACTA+TGG + chr6_1:96858630-96858649 Msa0900650:intron 25.0%
! AAACATGTGTGTAAAAGAAA+TGG - chr6_1:96858761-96858780 Msa0900630:intron 25.0%
! AACATGTGTGTAAAAGAAAT+GGG - chr6_1:96858762-96858781 Msa0900630:intron 25.0%
!! AATTTTGCAAAACATGTATC+CGG + chr6_1:96858893-96858912 Msa0900650:intron 25.0%
!! TGTTTTGCAAAATTGACTAT+TGG - chr6_1:96858899-96858918 Msa0900630:intron 25.0%
! TTTAATTAAAGAGAGACAAG+AGG - chr6_1:96859015-96859034 Msa0900630:intron 25.0%
!!! ATAGACAGGGTTTTAAAAAA+TGG - chr6_1:96859148-96859167 Msa0900630:intron 25.0%
! TTATTGGATGTTTAAATAGC+AGG - chr6_1:96859424-96859443 Msa0900630:intron 25.0%
! TTGTATTTGGATATATGCAT+TGG - chr6_1:96859495-96859514 Msa0900630:intron 25.0%
! AAATAGAATTTGACATGGAT+AGG - chr6_1:96859558-96859577 Msa0900630:intron 25.0%
! TTAAGGATGAAATCAATTCA+TGG - chr6_1:96859646-96859665 Msa0900630:intron 25.0%
! TAAGGATGAAATCAATTCAT+GGG - chr6_1:96859647-96859666 Msa0900630:intron 25.0%
! CTATTTAACAATACTGAGAA+TGG + chr6_1:96859781-96859800 Msa0900650:intron 25.0%
! GTATTGGAATTTGAACAAAT+TGG - chr6_1:96859812-96859831 Msa0900630:intron 25.0%
! GAATTTGAACAAATTGGTAT+TGG - chr6_1:96859818-96859837 Msa0900630:intron 25.0%
! TTGTACTAAATATCGTATCA+CGG + chr6_1:96859867-96859886 Msa0900650:intron 25.0%
!!! TGACTTTTAGAACTTTCAAT+AGG + chr6_1:96860032-96860051 Msa0900650:intron 25.0%
!! ATAAAATCGTTTTGCATCAT+AGG - chr6_1:96860556-96860575 Msa0900630:intron 25.0%
!! ATGATTGATTCACAAATGTA+CGG - chr6_1:96860701-96860720 Msa0900630:intron 25.0%
! TTAGAAGGCAATATATTTAG+TGG + chr6_1:96860822-96860841 Msa0900650:CDS 25.0%
TTTCGTGAAAGCAAAAATGA+CGG + chr6_1:96849108-96849127 None:intergenic 30.0%
CTTTCTACATAGAGTTCAAA+AGG + chr6_1:96849371-96849390 None:intergenic 30.0%
!! CCATTTACTTTTGACACTTT+CGG + chr6_1:96849418-96849437 None:intergenic 30.0%
ACATCACTAATACTAACATG+TGG - chr6_1:96849543-96849562 Msa0900630:CDS 30.0%
!! TTGGACTATTGGTGTTAAAT+AGG - chr6_1:96849813-96849832 Msa0900630:intron 30.0%
!! TGGACTATTGGTGTTAAATA+GGG - chr6_1:96849814-96849833 Msa0900630:intron 30.0%
!! TTTGCGAGTTGGATTTTTAA+GGG - chr6_1:96849841-96849860 Msa0900630:intron 30.0%
!! AGTTGGATTTTTAAGGGTTT+GGG - chr6_1:96849847-96849866 Msa0900630:intron 30.0%
!!! TTGCAAATTGGTTTTTGAAG+GGG + chr6_1:96849979-96849998 None:intergenic 30.0%
!!! GTTTGCAAATTGGTTTTTGA+AGG + chr6_1:96849981-96850000 None:intergenic 30.0%
! ACACATCCATAGAATTTGTT+TGG - chr6_1:96849999-96850018 Msa0900630:intron 30.0%
GTCAATCCAAACAAATTCTA+TGG + chr6_1:96850008-96850027 None:intergenic 30.0%
!!! TAGCTTGTTTTCATAAGTTG+TGG - chr6_1:96850116-96850135 Msa0900630:intron 30.0%
GTAACACCAATTCTTCAAAA+TGG + chr6_1:96850157-96850176 None:intergenic 30.0%
!! TGAAGAATTGGTGTTACATA+TGG - chr6_1:96850160-96850179 Msa0900630:intron 30.0%
TAAACCGCATATATTTGGAT+CGG + chr6_1:96850221-96850240 None:intergenic 30.0%
ATATAGGAATAAAACCCACT+TGG - chr6_1:96850561-96850580 Msa0900630:intron 30.0%
TATAGGAATAAAACCCACTT+GGG - chr6_1:96850562-96850581 Msa0900630:intron 30.0%
TCTCTAGTGTCAATTTAAGT+GGG - chr6_1:96850650-96850669 Msa0900630:intron 30.0%
!!! TGGTTTGGTTTGATTTTGTT+TGG - chr6_1:96850737-96850756 Msa0900630:intron 30.0%
AAAATTCGATCCAATCTTAG+CGG - chr6_1:96850777-96850796 Msa0900630:intron 30.0%
TTTGTAAAAACCGCTAAGAT+TGG + chr6_1:96850790-96850809 None:intergenic 30.0%
!!! TCCATAAGTATCCGTTTTTT+TGG - chr6_1:96850826-96850845 Msa0900630:intron 30.0%
TCCAAAAAAACGGATACTTA+TGG + chr6_1:96850830-96850849 None:intergenic 30.0%
CGTAAATCGATCCAAAAAAA+CGG + chr6_1:96850840-96850859 None:intergenic 30.0%
!!! GATTTTATTTTGGATCGGTT+TGG - chr6_1:96850859-96850878 Msa0900630:intron 30.0%
!!! TGGTTTGGTTTGATTTTGTT+TGG - chr6_1:96850737-96850756 Msa0900630:intron 30.0%
AAAATTCGATCCAATCTTAG+CGG - chr6_1:96850777-96850796 Msa0900630:intron 30.0%
TTTGTAAAAACCGCTAAGAT+TGG + chr6_1:96850790-96850809 None:intergenic 30.0%
!!! TCCATAAGTATCCGTTTTTT+TGG - chr6_1:96850826-96850845 Msa0900630:intron 30.0%
TCCAAAAAAACGGATACTTA+TGG + chr6_1:96850830-96850849 None:intergenic 30.0%
CGTAAATCGATCCAAAAAAA+CGG + chr6_1:96850840-96850859 None:intergenic 30.0%
!!! GATTTTATTTTGGATCGGTT+TGG - chr6_1:96850859-96850878 Msa0900630:intron 30.0%
ATCACCTATTATCATTACTC+GGG + chr6_1:96851218-96851237 None:intergenic 30.0%
CATCACCTATTATCATTACT+CGG + chr6_1:96851219-96851238 None:intergenic 30.0%
!!! ATTTTTAGAACTTCCCAACT+TGG - chr6_1:96851243-96851262 Msa0900630:intron 30.0%
ATTGAACCTATTACCAAGTT+GGG + chr6_1:96851259-96851278 None:intergenic 30.0%
AATTGAACCTATTACCAAGT+TGG + chr6_1:96851260-96851279 None:intergenic 30.0%
AATGTTGTTCAAAATTGCAG+AGG + chr6_1:96851689-96851708 None:intergenic 30.0%
GAACATAAAGGAAATGCATT+TGG - chr6_1:96851742-96851761 Msa0900630:intron 30.0%
ATTGATGCTGAAAATATCAC+TGG - chr6_1:96852096-96852115 Msa0900630:intron 30.0%
TGAGAAAGAAAGTGAATTAG+TGG - chr6_1:96852233-96852252 Msa0900630:intron 30.0%
!!! GATTTTCGTTTTGATTGAAC+CGG - chr6_1:96852359-96852378 Msa0900630:intron 30.0%
CTTACTTTACAACAACTTCT+CGG + chr6_1:96852795-96852814 None:intergenic 30.0%
TAAGTTTCGTTCATACCATT+TGG + chr6_1:96852968-96852987 None:intergenic 30.0%
! TATTTGAAGTCCAATCGTAA+TGG + chr6_1:96853623-96853642 None:intergenic 30.0%
GGTTCAACTATTTACAAAGA+AGG - chr6_1:96853992-96854011 Msa0900630:intron 30.0%
TCTTGTTGAAAAAACACTGT+AGG + chr6_1:96854191-96854210 Msa0900640:CDS 30.0%
!!! TACAGTGTTTTTTCAACAAG+AGG - chr6_1:96854190-96854209 Msa0900630:intron 30.0%
!!! ACAGTGTTTTTTCAACAAGA+GGG - chr6_1:96854191-96854210 Msa0900630:intron 30.0%
AAGAGATGAAGAAAAGCTTA+AGG + chr6_1:96854460-96854479 Msa0900640:CDS 30.0%
TCTTCCATAGTAATGATAGT+AGG - chr6_1:96854914-96854933 Msa0900630:intron 30.0%
GTTACCTACTATCATTACTA+TGG + chr6_1:96854921-96854940 Msa0900640:CDS 30.0%
ATAGTAGGTAACTTGATATG+AGG - chr6_1:96854929-96854948 Msa0900630:intron 30.0%
!!! GGAGTTGATGTAGAAATTTT+AGG - chr6_1:96854950-96854969 Msa0900630:intron 30.0%
GCATTGTATTTGTGAATGAT+TGG + chr6_1:96855054-96855073 Msa0900640:CDS 30.0%
TTTGTTCAGATTTCTGATGT+TGG - chr6_1:96855117-96855136 Msa0900630:intron 30.0%
! ATCTTTTGACAACTTTGTTG+AGG + chr6_1:96855161-96855180 None:intergenic 30.0%
TCAACAAAGTTGTCAAAAGA+TGG - chr6_1:96855160-96855179 Msa0900630:intron 30.0%
AGTTGTCAAAAGATGGAAAA+TGG - chr6_1:96855167-96855186 Msa0900630:intron 30.0%
! TCATCTTCTAAAAGATGTAC+AGG - chr6_1:96855268-96855287 Msa0900630:intron 30.0%
! AATGAGAGAAATGGATTCAA+AGG - chr6_1:96855300-96855319 Msa0900630:intron 30.0%
! ATGAGAGAAATGGATTCAAA+GGG - chr6_1:96855301-96855320 Msa0900630:intron 30.0%
AGGGTTCATGTTTATTAGAA+TGG - chr6_1:96855320-96855339 Msa0900630:intron 30.0%
GGGTTCATGTTTATTAGAAT+GGG - chr6_1:96855321-96855340 Msa0900630:intron 30.0%
! TTAGAATGGGAGTTGATTAT+AGG - chr6_1:96855334-96855353 Msa0900630:intron 30.0%
!!! AGGAGTTTTTTGAGGATTTT+GGG - chr6_1:96855363-96855382 Msa0900630:intron 30.0%
TTGCTTCAAGAGTTGAAATA+TGG - chr6_1:96855416-96855435 Msa0900630:intron 30.0%
TGCTTCAAGAGTTGAAATAT+GGG - chr6_1:96855417-96855436 Msa0900630:intron 30.0%
GTCCATTGACAAATAAAGAA+AGG + chr6_1:96855489-96855508 None:intergenic 30.0%
! TCTTTATTTGTCAATGGACT+AGG - chr6_1:96855490-96855509 Msa0900630:intron 30.0%
GAATGTAGAGGATATACATT+TGG - chr6_1:96855523-96855542 Msa0900630:intron 30.0%
CCTGATAAATCAAATATGCA+AGG + chr6_1:96855851-96855870 None:intergenic 30.0%
! CCTTGCATATTTGATTTATC+AGG - chr6_1:96855848-96855867 Msa0900630:intron 30.0%
ATTGATGCAGAAAAAATCAC+CGG - chr6_1:96855877-96855896 Msa0900630:intron 30.0%
! TACATAGCATGATTCTAGTT+TGG - chr6_1:96856256-96856275 Msa0900630:intron 30.0%
GAGGTAAACGTAATTTATAG+GGG + chr6_1:96856864-96856883 None:intergenic 30.0%
GTTTACCTCAATGACAAAAT+TGG - chr6_1:96856875-96856894 Msa0900630:intron 30.0%
TAAAAGACGTGCAAAAAACT+TGG - chr6_1:96856904-96856923 Msa0900630:intron 30.0%
! GAAAATGCTCATGTGATTTT+TGG - chr6_1:96857344-96857363 Msa0900630:intron 30.0%
!!! TTTTTTCACCCCAAAACAAA+GGG + chr6_1:96857393-96857412 None:intergenic 30.0%
!!! TTTTTTTCACCCCAAAACAA+AGG + chr6_1:96857394-96857413 None:intergenic 30.0%
TACAAACACCCCAAAAAATA+TGG - chr6_1:96857443-96857462 Msa0900630:intron 30.0%
AATTCGAACACCCTAATTTA+GGG - chr6_1:96857500-96857519 Msa0900630:intron 30.0%
AACTGTTATCCCCTAAATTA+GGG + chr6_1:96857513-96857532 None:intergenic 30.0%
TAACTGTTATCCCCTAAATT+AGG + chr6_1:96857514-96857533 None:intergenic 30.0%
ACTACTTAATAAGATTGCTC+CGG - chr6_1:96857683-96857702 Msa0900630:intron 30.0%
!!! GGATTTTTTGGAAAAAGTTC+CGG + chr6_1:96857705-96857724 None:intergenic 30.0%
GAACAAATTGAGAAAAGGTT+TGG + chr6_1:96858241-96858260 Msa0900650:CDS 30.0%
CAAATTAAGCTGATGAAACA+GGG - chr6_1:96858604-96858623 Msa0900630:intron 30.0%
! AACAAAAGCATGCAATCATA+AGG + chr6_1:96858689-96858708 Msa0900650:intron 30.0%
!!! AGAGCTTCTTTTTTCACATT+CGG + chr6_1:96858716-96858735 Msa0900650:intron 30.0%
! GTGAAAAAAGAAGCTCTAAT+TGG - chr6_1:96858719-96858738 Msa0900630:intron 30.0%
! CTCTAATTGGTTTAGTTTCA+AGG - chr6_1:96858732-96858751 Msa0900630:intron 30.0%
! ATTGGTTTAGTTTCAAGGAT+TGG - chr6_1:96858737-96858756 Msa0900630:intron 30.0%
! TTGGTTTAGTTTCAAGGATT+GGG - chr6_1:96858738-96858757 Msa0900630:intron 30.0%
ACATGTGTGTAAAAGAAATG+GGG - chr6_1:96858763-96858782 Msa0900630:intron 30.0%
AAATAAATCATGCAGGCATT+GGG + chr6_1:96859051-96859070 Msa0900650:intron 30.0%
TAAATAAATCATGCAGGCAT+TGG + chr6_1:96859052-96859071 Msa0900650:intron 30.0%
ATATAATCTAGGTGATGTGA+TGG - chr6_1:96859085-96859104 Msa0900630:intron 30.0%
CTATATGCATCACACTAATT+TGG + chr6_1:96859132-96859151 Msa0900650:intron 30.0%
CAACAACATAATTGTGATTG+AGG - chr6_1:96859221-96859240 Msa0900630:intron 30.0%
TGAAATTCTCTACAACATCA+AGG - chr6_1:96859264-96859283 Msa0900630:intron 30.0%
!!! CTATGCAGAGTTTTAAACAA+CGG + chr6_1:96859320-96859339 Msa0900650:intron 30.0%
GATGTTTAAATAGCAGGTTA+TGG - chr6_1:96859430-96859449 Msa0900630:intron 30.0%
ATACTTGTTTAGGTAGTGTT+TGG + chr6_1:96859693-96859712 Msa0900650:intron 30.0%
CATGGCATAAATACTTGTTT+AGG + chr6_1:96859703-96859722 Msa0900650:intron 30.0%
TTGTTAAATAGCAGCTATAG+TGG - chr6_1:96859790-96859809 Msa0900630:intron 30.0%
TCATAGATTGTGGAAAATAG+CGG + chr6_1:96859953-96859972 Msa0900650:intron 30.0%
AGTGTTGTAATCATAGATTG+TGG + chr6_1:96859963-96859982 Msa0900650:intron 30.0%
! TCTGAAATAAATAGACCTGA+TGG - chr6_1:96860416-96860435 Msa0900630:intron 30.0%
!!! CTGTTTTGTTTGTTTCCATT+AGG - chr6_1:96860528-96860547 Msa0900630:intron 30.0%
ACTATCAATAAGCACATGTT+TGG + chr6_1:96860584-96860603 Msa0900650:intron 30.0%
CAGTTTACTAAACATCTTCA+AGG + chr6_1:96860636-96860655 Msa0900650:intron 30.0%
ATGAACGATGATGATAACTC+CGG + chr6_1:96849045-96849064 None:intergenic 35.0%
!! TCGTTCATTTTGATATCCTC+AGG - chr6_1:96849057-96849076 Msa0900630:three_prime_UTR 35.0%
!! CCGAAAGTGTCAAAAGTAAA+TGG - chr6_1:96849415-96849434 Msa0900630:CDS 35.0%
GTTAGTATTAGTGATGTGTC+TGG + chr6_1:96849540-96849559 None:intergenic 35.0%
ACCTCGATACTTCAAATTGA+AGG + chr6_1:96849647-96849666 None:intergenic 35.0%
ACTCCTTCAATTTGGACTAT+TGG - chr6_1:96849802-96849821 Msa0900630:intron 35.0%
ACACCAATAGTCCAAATTGA+AGG + chr6_1:96849808-96849827 None:intergenic 35.0%
!! GTTTGCGAGTTGGATTTTTA+AGG - chr6_1:96849840-96849859 Msa0900630:intron 35.0%
!! GAGTTGGATTTTTAAGGGTT+TGG - chr6_1:96849846-96849865 Msa0900630:intron 35.0%
!!! AAATTGGTTTTTGAAGGGGA+TGG + chr6_1:96849975-96849994 None:intergenic 35.0%
CTATGGATGTGTTTGCAAAT+TGG + chr6_1:96849991-96850010 None:intergenic 35.0%
CAAACAGTCTCAAGTGTTTA+TGG + chr6_1:96850051-96850070 None:intergenic 35.0%
!! ACACCTCCATTTTGAAGAAT+TGG - chr6_1:96850148-96850167 Msa0900630:intron 35.0%
ACACCAATTCTTCAAAATGG+AGG + chr6_1:96850154-96850173 None:intergenic 35.0%
! GGTGTTACATATGGTATGTT+TGG - chr6_1:96850169-96850188 Msa0900630:intron 35.0%
CTCTCTAGTGTCAATTTAAG+TGG - chr6_1:96850649-96850668 Msa0900630:intron 35.0%
TTTAAACACCTCTACCTAAG+TGG - chr6_1:96850883-96850902 Msa0900630:intron 35.0%
TTAAACACCTCTACCTAAGT+GGG - chr6_1:96850884-96850903 Msa0900630:intron 35.0%
TCTTCCCGAGTAATGATAAT+AGG - chr6_1:96851211-96851230 Msa0900630:intron 35.0%
ATGTGGACAAAAGATTGTTG+AGG + chr6_1:96851314-96851333 None:intergenic 35.0%
ATGAACATCAATGTGGAATG+TGG + chr6_1:96851331-96851350 None:intergenic 35.0%
TGATTGGATGAACATCAATG+TGG + chr6_1:96851338-96851357 None:intergenic 35.0%
!! GCATTGCTTTTGTGAATGAT+TGG + chr6_1:96851354-96851373 None:intergenic 35.0%
! AGTTTTTCATCAGAGACACT+AGG - chr6_1:96851523-96851542 Msa0900630:intron 35.0%
CCTCATATTTCAACTCTTGA+AGG + chr6_1:96851625-96851644 None:intergenic 35.0%
CCTTCAAGAGTTGAAATATG+AGG - chr6_1:96851622-96851641 Msa0900630:intron 35.0%
CCTCATATTTCAACTCTTGA+AGG + chr6_1:96851625-96851644 None:intergenic 35.0%
CCTTCAAGAGTTGAAATATG+AGG - chr6_1:96851622-96851641 Msa0900630:intron 35.0%
!! TTCTTCCTTTTTCATTGGAC+TGG - chr6_1:96851708-96851727 Msa0900630:intron 35.0%
CAATACCAGTCCAATGAAAA+AGG + chr6_1:96851716-96851735 None:intergenic 35.0%
!! TTTCATTGGACTGGTATTGA+TGG - chr6_1:96851717-96851736 Msa0900630:intron 35.0%
!! TTCATTGGACTGGTATTGAT+GGG - chr6_1:96851718-96851737 Msa0900630:intron 35.0%
! GTATTGATGGGAGAACATAA+AGG - chr6_1:96851730-96851749 Msa0900630:intron 35.0%
ATTCATAATACGAATGCGTC+TGG + chr6_1:96851778-96851797 None:intergenic 35.0%
CGCATTCGTATTATGAATGT+TGG - chr6_1:96851780-96851799 Msa0900630:intron 35.0%
! TTGGAAGTAGAGAGTGTATA+CGG - chr6_1:96851856-96851875 Msa0900630:intron 35.0%
AAGTGAATTAGTGGTCTTCT+CGG - chr6_1:96852242-96852261 Msa0900630:intron 35.0%
! TAGTAGGACAATGGTCTTTT+GGG - chr6_1:96852310-96852329 Msa0900630:intron 35.0%
CATAGTTTCATCCTTGCAAA+AGG + chr6_1:96852500-96852519 None:intergenic 35.0%
! TACAGTAACTTGTATATCCC+TGG + chr6_1:96853250-96853269 None:intergenic 35.0%
!! AGTGATTAGCCTCAAAAGTT+AGG - chr6_1:96853795-96853814 Msa0900630:intron 35.0%
! TAGTTGAAGCCTAACTTTTG+AGG + chr6_1:96853807-96853826 None:intergenic 35.0%
TCATCTACATGACCTAACAA+AGG - chr6_1:96854015-96854034 Msa0900630:intron 35.0%
CATCGAAATCATGATTACGA+AGG + chr6_1:96854156-96854175 Msa0900640:CDS 35.0%
! CAAGAGGGCTTTTCTTTTAT+AGG - chr6_1:96854206-96854225 Msa0900630:intron 35.0%
ATGTCACACAAAGGATTTGA+AGG + chr6_1:96854335-96854354 Msa0900640:CDS 35.0%
TCTACTAGTACATGTGTGAT+GGG + chr6_1:96854433-96854452 Msa0900640:CDS 35.0%
! CTGGTTTGAGTAATTTGACA+TGG - chr6_1:96854575-96854594 Msa0900630:intron 35.0%
GAGTAATTTGACATGGTTCA+AGG - chr6_1:96854582-96854601 Msa0900630:intron 35.0%
ATTTAGAGAGCAAAAGGTCA+AGG - chr6_1:96854774-96854793 Msa0900630:intron 35.0%
TTTAGAGAGCAAAAGGTCAA+GGG - chr6_1:96854775-96854794 Msa0900630:intron 35.0%
!! TGCACTAGTTTGCTTTGAAT+TGG - chr6_1:96854869-96854888 Msa0900630:intron 35.0%
!! ACTAGTTTGCTTTGAATTGG+TGG - chr6_1:96854872-96854891 Msa0900630:intron 35.0%
! CTTTTGTCCACATTTCACAT+TGG - chr6_1:96855021-96855040 Msa0900630:intron 35.0%
ATGAACACCAATGTGAAATG+TGG + chr6_1:96855031-96855050 Msa0900640:CDS 35.0%
AAAGATGGAAAATGGAGATG+TGG - chr6_1:96855175-96855194 Msa0900630:intron 35.0%
AGTAGTTGCAATGAGAGAAA+TGG - chr6_1:96855291-96855310 Msa0900630:intron 35.0%
!!! GAGGAGTTTTTTGAGGATTT+TGG - chr6_1:96855362-96855381 Msa0900630:intron 35.0%
!! CCTTGTTGATAATCCTGAAA+TGG + chr6_1:96855392-96855411 None:intergenic 35.0%
CCATTTCAGGATTATCAACA+AGG - chr6_1:96855389-96855408 Msa0900630:intron 35.0%
GCTTCAAGAGTTGAAATATG+GGG - chr6_1:96855418-96855437 Msa0900630:intron 35.0%
GAGGATATACATTTGGAAGT+TGG - chr6_1:96855530-96855549 Msa0900630:intron 35.0%
! ATGTTAGAAGCTCTAGCAAT+AGG - chr6_1:96855577-96855596 Msa0900630:intron 35.0%
!! TTTAGCGAGATTTGTTATGG+CGG + chr6_1:96855908-96855927 None:intergenic 35.0%
!! CCATTTAGCGAGATTTGTTA+TGG + chr6_1:96855911-96855930 None:intergenic 35.0%
CCATAACAAATCTCGCTAAA+TGG - chr6_1:96855908-96855927 Msa0900630:intron 35.0%
AAATCTCGCTAAATGGTGAA+TGG - chr6_1:96855915-96855934 Msa0900630:intron 35.0%
AATCTCGCTAAATGGTGAAT+GGG - chr6_1:96855916-96855935 Msa0900630:intron 35.0%
! TATCCCTTTGGTTCATTATG+AGG - chr6_1:96856065-96856084 Msa0900630:intron 35.0%
TGTCCTCATAATGAACCAAA+GGG + chr6_1:96856071-96856090 None:intergenic 35.0%
TTGTCCTCATAATGAACCAA+AGG + chr6_1:96856072-96856091 None:intergenic 35.0%
GTTCATTATGAGGACAACAA+TGG - chr6_1:96856075-96856094 Msa0900630:intron 35.0%
CATAGTTTCATCCATGCAAA+AGG + chr6_1:96856224-96856243 None:intergenic 35.0%
GACATGACATGACAAATTAG+TGG + chr6_1:96857202-96857221 None:intergenic 35.0%
AATAGGGTGCATGAGAAAAT+AGG + chr6_1:96857316-96857335 None:intergenic 35.0%
!! TATTGAGTTCCCCTTTGTTT+TGG - chr6_1:96857380-96857399 Msa0900630:intron 35.0%
!!! ATTGAGTTCCCCTTTGTTTT+GGG - chr6_1:96857381-96857400 Msa0900630:intron 35.0%
! TTTTTCACCCCAAAACAAAG+GGG + chr6_1:96857392-96857411 None:intergenic 35.0%
!!! TGGAACGCACCATATTTTTT+GGG + chr6_1:96857455-96857474 None:intergenic 35.0%
!!! ATGGAACGCACCATATTTTT+TGG + chr6_1:96857456-96857475 None:intergenic 35.0%
GAATTCGAACACCCTAATTT+AGG - chr6_1:96857499-96857518 Msa0900630:intron 35.0%
ATTCGAACACCCTAATTTAG+GGG - chr6_1:96857501-96857520 Msa0900630:intron 35.0%
!!! TTATTTTGGATTTTGAGGGG+CGG + chr6_1:96857765-96857784 Msa0900650:CDS 35.0%
TTCGAACCTGATGATAACTA+CGG + chr6_1:96858002-96858021 Msa0900650:CDS 35.0%
CAAATTGAGAAAAGGTTTGG+CGG + chr6_1:96858238-96858257 Msa0900650:CDS 35.0%
CTCAAATAAGCTATGAAGCA+TGG + chr6_1:96858357-96858376 Msa0900650:CDS 35.0%
GCAAATTAAGCTGATGAAAC+AGG - chr6_1:96858603-96858622 Msa0900630:intron 35.0%
! AAAAGCATGCAATCATAAGG+TGG + chr6_1:96858686-96858705 Msa0900650:intron 35.0%
! CTCACACTCATTATTTTCAC+CGG - chr6_1:96858871-96858890 Msa0900630:intron 35.0%
TTAGTGTGATGCATATAGAC+AGG - chr6_1:96859134-96859153 Msa0900630:intron 35.0%
TAGTGTGATGCATATAGACA+GGG - chr6_1:96859135-96859154 Msa0900630:intron 35.0%
AATTGTGATTGAGGTTGCAT+TGG - chr6_1:96859230-96859249 Msa0900630:intron 35.0%
! CGTTGTTTAAAACTCTGCAT+AGG - chr6_1:96859318-96859337 Msa0900630:intron 35.0%
GTTTCACATAACACAACTCT+TGG - chr6_1:96859383-96859402 Msa0900630:intron 35.0%
ACATAACACAACTCTTGGTT+TGG - chr6_1:96859388-96859407 Msa0900630:intron 35.0%
CATAACACAACTCTTGGTTT+GGG - chr6_1:96859389-96859408 Msa0900630:intron 35.0%
! ATAACACAACTCTTGGTTTG+GGG - chr6_1:96859390-96859409 Msa0900630:intron 35.0%
! TGGGGTAGAAGTTGATTTAT+TGG - chr6_1:96859408-96859427 Msa0900630:intron 35.0%
AGAATGGTAATATCCACATG+GGG + chr6_1:96859765-96859784 Msa0900650:intron 35.0%
GAGAATGGTAATATCCACAT+GGG + chr6_1:96859766-96859785 Msa0900650:intron 35.0%
TGAGAATGGTAATATCCACA+TGG + chr6_1:96859767-96859786 Msa0900650:intron 35.0%
AATAGCAGCTATAGTGGTAT+TGG - chr6_1:96859796-96859815 Msa0900630:intron 35.0%
! TTAGTTTGAGAGTCTGTCTT+TGG - chr6_1:96860130-96860149 Msa0900630:intron 35.0%
!! ATGCAGCTCTTTGTTGATTT+CGG + chr6_1:96860285-96860304 Msa0900650:intron 35.0%
AAAAATTGGGCTTGAGTTCA+TGG - chr6_1:96860361-96860380 Msa0900630:intron 35.0%
AAAATTGGGCTTGAGTTCAT+GGG - chr6_1:96860362-96860381 Msa0900630:intron 35.0%
TTGTTTGTTTCCATTAGGAG+AGG - chr6_1:96860533-96860552 Msa0900630:intron 35.0%
! ACGATTTTATCCTCTCCTAA+TGG + chr6_1:96860546-96860565 Msa0900650:intron 35.0%
AGAAGATAGATTCGAACCTG+AGG + chr6_1:96849076-96849095 None:intergenic 40.0%
ACACTTGAATAGAAGGCAAG+CGG - chr6_1:96849248-96849267 Msa0900630:three_prime_UTR 40.0%
!!! GTTGCACTGCAAAGCTTTTT+TGG - chr6_1:96849278-96849297 Msa0900630:three_prime_UTR 40.0%
!!! CACTGCAAAGCTTTTTTGGA+TGG - chr6_1:96849282-96849301 Msa0900630:three_prime_UTR 40.0%
CCATGAATGTTGTGTTTACG+AGG + chr6_1:96849318-96849337 None:intergenic 40.0%
CCTCGTAAACACAACATTCA+TGG - chr6_1:96849315-96849334 Msa0900630:exon 40.0%
AACACAACATTCATGGACCT+AGG - chr6_1:96849322-96849341 Msa0900630:exon 40.0%
ATAGCAATGTCATGTCTCCT+AGG + chr6_1:96849342-96849361 None:intergenic 40.0%
TGTAGAAAGTCAATAGCCTC+TGG - chr6_1:96849382-96849401 Msa0900630:CDS 40.0%
!! GCCTTCAATTTGAAGTATCG+AGG - chr6_1:96849643-96849662 Msa0900630:intron 40.0%
!! TGAAGTATCGAGGTTGCATA+AGG - chr6_1:96849653-96849672 Msa0900630:intron 40.0%
!! TGGATTTTTAAGGGTTTGGG+AGG - chr6_1:96849850-96849869 Msa0900630:intron 40.0%
!! GGATTTTTAAGGGTTTGGGA+GGG - chr6_1:96849851-96849870 Msa0900630:intron 40.0%
GTCTCAAGTGTTTATGGCAA+TGG + chr6_1:96850045-96850064 None:intergenic 40.0%
CAAGCCGATCCAAATATATG+CGG - chr6_1:96850214-96850233 Msa0900630:intron 40.0%
! TTGGGTTGTTCTGATGGTAT+TGG - chr6_1:96850580-96850599 Msa0900630:intron 40.0%
!! TTGTTCTGATGGTATTGGCT+TGG - chr6_1:96850585-96850604 Msa0900630:intron 40.0%
!! TGTTCTGATGGTATTGGCTT+GGG - chr6_1:96850586-96850605 Msa0900630:intron 40.0%
AAATTAGCCCACTTAGGTAG+AGG + chr6_1:96850894-96850913 None:intergenic 40.0%
GAAGCTAAATTAGCCCACTT+AGG + chr6_1:96850666-96850685 None:intergenic 40.0%
TGGATTTAAACACCTCTACC+TGG - chr6_1:96850879-96850898 Msa0900630:intron 40.0%
! GAACTTCCCAACTTGGTAAT+AGG - chr6_1:96851250-96851269 Msa0900630:intron 40.0%
AAAACTTTGTTGAGGAGCTG+AGG + chr6_1:96851453-96851472 None:intergenic 40.0%
TTGGAAGGAGAGTTAGAGTA+AGG - chr6_1:96851895-96851914 Msa0900630:intron 40.0%
! CTAGTAGGACAATGGTCTTT+TGG - chr6_1:96852309-96852328 Msa0900630:intron 40.0%
GTTTCATCCTTGCAAAAGGT+CGG + chr6_1:96852496-96852515 None:intergenic 40.0%
!!! TTTTTTTGGGTGTGCGTGTT+AGG - chr6_1:96853195-96853214 Msa0900630:intron 40.0%
!!! TTTTTTGGGTGTGCGTGTTA+GGG - chr6_1:96853196-96853215 Msa0900630:intron 40.0%
! GGTAGCTAGTTTCCTTTGTT+AGG + chr6_1:96854030-96854049 Msa0900640:CDS 40.0%
GTATCATGAATCCTCGCTTT+CGG - chr6_1:96854109-96854128 Msa0900630:intron 40.0%
TATCATGAATCCTCGCTTTC+GGG - chr6_1:96854110-96854129 Msa0900630:intron 40.0%
ATGAGATGCATGTCACACAA+AGG + chr6_1:96854344-96854363 Msa0900640:CDS 40.0%
GTCTACTAGTACATGTGTGA+TGG + chr6_1:96854434-96854453 Msa0900640:CDS 40.0%
ACTCAAACCAGACAACTTTG+TGG + chr6_1:96854566-96854585 Msa0900640:CDS 40.0%
CAAAGAAGATCTTGACAGTC+TGG + chr6_1:96854837-96854856 Msa0900640:CDS 40.0%
CAGACTGTCAAGATCTTCTT+TGG - chr6_1:96854835-96854854 Msa0900630:intron 40.0%
ACTGTCAAGATCTTCTTTGG+TGG - chr6_1:96854838-96854857 Msa0900630:intron 40.0%
TGGTGGAGTGAAATTCATTG+TGG - chr6_1:96854889-96854908 Msa0900630:intron 40.0%
GGTGGAGTGAAATTCATTGT+GGG - chr6_1:96854890-96854909 Msa0900630:intron 40.0%
ACAACTTTGTTGAGGAGCTA+AGG + chr6_1:96855153-96855172 None:intergenic 40.0%
AGATTCCCATCAGAGACAAT+AGG - chr6_1:96855223-96855242 Msa0900630:intron 40.0%
CATCACCTATTGTCTCTGAT+GGG + chr6_1:96855231-96855250 None:intergenic 40.0%
ACATCACCTATTGTCTCTGA+TGG + chr6_1:96855232-96855251 None:intergenic 40.0%
TCAGAGACAATAGGTGATGT+TGG - chr6_1:96855232-96855251 Msa0900630:intron 40.0%
! TGGGAGTTGATTATAGGAGA+TGG - chr6_1:96855340-96855359 Msa0900630:intron 40.0%
! GAGTTGATTATAGGAGATGG+AGG - chr6_1:96855343-96855362 Msa0900630:intron 40.0%
!!! GGATTTTGGGATACCATTTC+AGG - chr6_1:96855376-96855395 Msa0900630:intron 40.0%
AGAGTAGTACTTAGCACTTG+TGG - chr6_1:96855442-96855461 Msa0900630:intron 40.0%
!! TGTCAATGGACTAGGAATGA+TGG - chr6_1:96855498-96855517 Msa0900630:intron 40.0%
!! GTCAATGGACTAGGAATGAT+GGG - chr6_1:96855499-96855518 Msa0900630:intron 40.0%
! TTAGAAGCTCTAGCAATAGG+AGG - chr6_1:96855580-96855599 Msa0900630:intron 40.0%
CTTCATCATTTAGCGAGACA+AGG + chr6_1:96855811-96855830 None:intergenic 40.0%
TGTCTCGCTAAATGATGAAG+TGG - chr6_1:96855811-96855830 Msa0900630:intron 40.0%
! AGTGAAGTGAGTGGTTTTCA+CGG - chr6_1:96856013-96856032 Msa0900630:intron 40.0%
GTTGAGTGAAAGGAAAAGAC+AGG - chr6_1:96856035-96856054 Msa0900630:intron 40.0%
ACAGGACACAAATATCCCTT+TGG - chr6_1:96856053-96856072 Msa0900630:intron 40.0%
! TTCAAAACCGTCCTTTTGCA+TGG - chr6_1:96856210-96856229 Msa0900630:intron 40.0%
GTTTCATCCATGCAAAAGGA+CGG + chr6_1:96856220-96856239 None:intergenic 40.0%
GATAGGTTCATCCATGCAAA+AGG + chr6_1:96856356-96856375 None:intergenic 40.0%
ACATGACAAATTAGTGGTCG+AGG + chr6_1:96857196-96857215 None:intergenic 40.0%
GGTGCATGAGAAAATAGGTA+AGG + chr6_1:96857311-96857330 None:intergenic 40.0%
!!! TTGAGTTCCCCTTTGTTTTG+GGG - chr6_1:96857382-96857401 Msa0900630:intron 40.0%
!!! GGAACGCACCATATTTTTTG+GGG + chr6_1:96857454-96857473 None:intergenic 40.0%
! AAATGACGGAAGAGAAAGAG+AGG + chr6_1:96849094-96849113 None:intergenic 40.0%
! TGCAGATTTCGTTTTCGTGA+TGG + chr6_1:96849120-96849139 None:intergenic 40.0%
ACACTTGAATAGAAGGCAAG+TGG - chr6_1:96849248-96849267 Msa0900630:three_prime_UTR 40.0%
CACTTGAATAGAAGGCAAGT+GGG - chr6_1:96858200-96858219 Msa0900630:intron 40.0%
! GTCACTGAGGTTAAGAGTTT+TGG - chr6_1:96858788-96858807 Msa0900630:intron 40.0%
!!! AGTTTTGGAACGATGCAGTT+GGG - chr6_1:96858803-96858822 Msa0900630:intron 40.0%
! TATGGTGTGAAAAAGCGTGA+TGG - chr6_1:96858827-96858846 Msa0900630:intron 40.0%
! GCAACACAATGCTTTTGATG+TGG - chr6_1:96859192-96859211 Msa0900630:intron 40.0%
CATGGATAGGAGACAAAAAG+TGG - chr6_1:96859571-96859590 Msa0900630:intron 40.0%
AAAAGAGTTGCACGTTCTTC+TGG - chr6_1:96860160-96860179 Msa0900630:intron 40.0%
TCATGCTCACTTGCATCATT+TGG + chr6_1:96860253-96860272 Msa0900650:intron 40.0%
AATGATGCAAGTGAGCATGA+TGG - chr6_1:96860253-96860272 Msa0900630:intron 40.0%
!! TGCAGCTCTTTGTTGATTTC+GGG + chr6_1:96860284-96860303 Msa0900650:intron 40.0%
AGAGCTGCATTACCTAAACA+AGG - chr6_1:96860295-96860314 Msa0900630:intron 40.0%
! GTAGTTTGTCCTCCTTGTTT+AGG + chr6_1:96860310-96860329 Msa0900650:intron 40.0%
AAGCAGCGTGACACAAAAAT+TGG - chr6_1:96860347-96860366 Msa0900630:intron 40.0%
AGCAGCGTGACACAAAAATT+GGG - chr6_1:96860348-96860367 Msa0900630:intron 40.0%
! AATAAATAGACCTGATGGCG+AGG - chr6_1:96860421-96860440 Msa0900630:intron 40.0%
AGATATCAACTTATGCCACC+AGG + chr6_1:96860762-96860781 Msa0900650:CDS 40.0%
CACTTGAATAGAAGGCAAGC+GGG - chr6_1:96849249-96849268 Msa0900630:three_prime_UTR 45.0%
GAGGTTGCATAAGGTCAGTT+TGG - chr6_1:96849662-96849681 Msa0900630:intron 45.0%
CTCACGACACTCCTTCAATT+TGG - chr6_1:96849794-96849813 Msa0900630:intron 45.0%
AATAGGGTGTGTTTGCGAGT+TGG - chr6_1:96849830-96849849 Msa0900630:intron 45.0%
TTTAAGGGTTTGGGAGGGAA+AGG - chr6_1:96849856-96849875 Msa0900630:intron 45.0%
ACCATCAGAACAACCCAAGT+GGG + chr6_1:96850578-96850597 None:intergenic 45.0%
TACCATCAGAACAACCCAAG+TGG + chr6_1:96850579-96850598 None:intergenic 45.0%
GAATTGAACCTGAGACCTCA+AGG + chr6_1:96850630-96850649 None:intergenic 45.0%
CGGATACTTATGGATGCGTT+TGG + chr6_1:96850820-96850839 None:intergenic 45.0%
CGGATACTTATGGATGCGTT+TGG + chr6_1:96850820-96850839 None:intergenic 45.0%
AGATCTTGACAACCAGGTAG+AGG + chr6_1:96851128-96851147 None:intergenic 45.0%
TGACGAAGATCTTGACAACC+AGG + chr6_1:96851134-96851153 None:intergenic 45.0%
GTTGTCAAGATCTTCGTCAG+CGG - chr6_1:96851135-96851154 Msa0900630:CDS 45.0%
TGGTCGAGTGGAATTCATTG+TGG - chr6_1:96851186-96851205 Msa0900630:intron 45.0%
GGTCGAGTGGAATTCATTGT+GGG - chr6_1:96851187-96851206 Msa0900630:intron 45.0%
TCAGAGACACTAGGTGATGT+TGG - chr6_1:96851532-96851551 Msa0900630:intron 45.0%
! ATGTTGGAAGCTCTAGCAAC+AGG - chr6_1:96851796-96851815 Msa0900630:intron 45.0%
GAAGGAGAGTTAGAGTAAGG+AGG - chr6_1:96851898-96851917 Msa0900630:intron 45.0%
CGTCTCGCTAAATGATCAAG+TGG - chr6_1:96852030-96852049 Msa0900630:intron 45.0%
TCTCGGTTGAGTGAAAGGAA+AGG - chr6_1:96852259-96852278 Msa0900630:intron 45.0%
CTCGGTTGAGTGAAAGGAAA+GGG - chr6_1:96852260-96852279 Msa0900630:intron 45.0%
TCGGTTCACTAGTAGGACAA+TGG - chr6_1:96852301-96852320 Msa0900630:intron 45.0%
! CTTCAAACCGACCTTTTGCA+AGG - chr6_1:96852486-96852505 Msa0900630:intron 45.0%
GACAAACGGACCATTACGAT+TGG - chr6_1:96853610-96853629 Msa0900630:intron 45.0%
ACTCTGATGAGCTCGATAGA+CGG + chr6_1:96853878-96853897 None:intergenic 45.0%
TCGAAAATATCCCGAAAGCG+AGG + chr6_1:96854123-96854142 Msa0900640:CDS 45.0%
GGATATATGTGTCGCACAGA+AGG + chr6_1:96854278-96854297 Msa0900640:CDS 45.0%
!! CAAAAGTGTTCAGCTAGCGA+TGG + chr6_1:96854374-96854393 Msa0900640:CDS 45.0%
AGTTGTGTGTCATGCAGCTA+AGG + chr6_1:96854403-96854422 Msa0900640:CDS 45.0%
TCTCCTCACTGAAACACCAA+CGG - chr6_1:96854488-96854507 Msa0900630:intron 45.0%
GAAGAGCAATCATGCGTACA+AGG + chr6_1:96854608-96854627 Msa0900640:CDS 45.0%
!!! GGAGATGGAGGAGTTTTTTG+AGG - chr6_1:96855355-96855374 Msa0900630:intron 45.0%
! GGAATGATGGGAGAATGTAG+AGG - chr6_1:96855511-96855530 Msa0900630:intron 45.0%
TAGATGGAGACGCTGACAAA+AGG - chr6_1:96855608-96855627 Msa0900630:intron 45.0%
AGATGGAGACGCTGACAAAA+GGG - chr6_1:96855609-96855628 Msa0900630:intron 45.0%
! TTGGAAGGAGAGAGTGTAGA+CGG - chr6_1:96855637-96855656 Msa0900630:intron 45.0%
TTGGAAGGAGAGTGAGAGTA+AGG - chr6_1:96855676-96855695 Msa0900630:intron 45.0%
!! ATTTGTTATGGCGGAGCAAC+CGG + chr6_1:96855899-96855918 None:intergenic 45.0%
GAGAAAGGAAGTGAAGTGAG+TGG - chr6_1:96856004-96856023 Msa0900630:intron 45.0%
! GGTTTTCACGGTTGAGTGAA+AGG - chr6_1:96856025-96856044 Msa0900630:intron 45.0%
! CTTCAAACCGTCCTTTTGCA+TGG - chr6_1:96856342-96856361 Msa0900630:intron 45.0%
GGTTCATCCATGCAAAAGGA+CGG + chr6_1:96856352-96856371 None:intergenic 45.0%
TGACGTGTTCGTATTGTGTC+CGG - chr6_1:96858322-96858341 Msa0900630:intron 45.0%
TGAAGCATGGACACAAACAC+CGG + chr6_1:96858344-96858363 Msa0900650:CDS 45.0%
AAGAAATGGGGTTGTCACTG+AGG - chr6_1:96858775-96858794 Msa0900630:intron 45.0%
!!! GAGTTTTGGAACGATGCAGT+TGG - chr6_1:96858802-96858821 Msa0900630:intron 45.0%
ATGGTTCGATTCTGTAGCAC+AGG - chr6_1:96859167-96859186 Msa0900630:intron 45.0%
AACGGTCAGTGTATCTGTTG+TGG + chr6_1:96859302-96859321 Msa0900650:intron 45.0%
CTGCATAGGTAGATGCGAAT+TGG - chr6_1:96859332-96859351 Msa0900630:intron 45.0%
!! CGTTCTTCTGGAACTTCGAA+TGG - chr6_1:96860172-96860191 Msa0900630:intron 45.0%
GCTGCATTACCTAAACAAGG+AGG - chr6_1:96860298-96860317 Msa0900630:intron 45.0%
CTTGAGTTCATGGGAGATGA+AGG - chr6_1:96860371-96860390 Msa0900630:intron 45.0%
AACTTATGCCACCAGGTGAT+CGG + chr6_1:96860755-96860774 Msa0900650:CDS 45.0%
!!! TTGATATTTTTAAAAAATTA+AGG + chr6_1:96849916-96849935 None:intergenic 5.0%
!! ATATAATAATAAATAAATCT+TGG - chr6_1:96852539-96852558 Msa0900630:intron 5.0%
!! TATAATAATAAATAAATCTT+GGG - chr6_1:96852540-96852559 Msa0900630:intron 5.0%
!!! TGTTTTTTTAAAAAATTTTA+CGG + chr6_1:96856155-96856174 None:intergenic 5.0%
!! ATTATTATTATTATTATTGA+AGG + chr6_1:96856415-96856434 None:intergenic 5.0%
!! AATAATAAATAAATAAATCT+TGG - chr6_1:96856459-96856478 Msa0900630:intron 5.0%
!! TAAAAAAAAAAAGATTTATA+AGG - chr6_1:96856944-96856963 Msa0900630:intron 5.0%
!! AAAAAAAAAAAGATTTATAA+GGG - chr6_1:96856945-96856964 Msa0900630:intron 5.0%
!! TATTTATTTATATATAATCT+AGG - chr6_1:96859074-96859093 Msa0900630:intron 5.0%
GTATCAACTCAACAGCGCTG+TGG - chr6_1:96848998-96849017 Msa0900630:three_prime_UTR 50.0%
AGTCAATAGCCTCTGGTGCT+AGG - chr6_1:96849389-96849408 Msa0900630:CDS 50.0%
TTTCGGTTTCCTAGCACCAG+AGG + chr6_1:96849401-96849420 None:intergenic 50.0%
TTGAAGGGGATGGCTTTCGA+GGG + chr6_1:96849965-96849984 None:intergenic 50.0%
TTTGAAGGGGATGGCTTTCG+AGG + chr6_1:96849966-96849985 None:intergenic 50.0%
! CAAAATGGAGGTGTGTCGTG+TGG + chr6_1:96850142-96850161 None:intergenic 50.0%
! ACCCACTTGGGTTGTTCTGA+TGG - chr6_1:96850574-96850593 Msa0900630:intron 50.0%
! TCAAGGAAGAGCACACTCTC+AGG + chr6_1:96850613-96850632 None:intergenic 50.0%
! TGAGAGTGTGCTCTTCCTTG+AGG - chr6_1:96850612-96850631 Msa0900630:intron 50.0%
!! TGCACTGGTTGGCTCTGAAT+TGG - chr6_1:96851166-96851185 Msa0900630:intron 50.0%
!! TTGGCTCTGAATTGGTCGAG+TGG - chr6_1:96851174-96851193 Msa0900630:intron 50.0%
! TTGGAAGCTCTAGCAACAGG+AGG - chr6_1:96851799-96851818 Msa0900630:intron 50.0%
TAGATGGAGACGCTGACGAA+AGG - chr6_1:96851827-96851846 Msa0900630:intron 50.0%
AGATGGAGACGCTGACGAAA+GGG - chr6_1:96851828-96851847 Msa0900630:intron 50.0%
AGAGTGTATACGGCGACGAA+GGG - chr6_1:96851866-96851885 Msa0900630:intron 50.0%
GGTCTTCTCGGTTGAGTGAA+AGG - chr6_1:96852254-96852273 Msa0900630:intron 50.0%
GTTGAGTGAAAGGAAAGGGC+AGG - chr6_1:96852264-96852283 Msa0900630:intron 50.0%
GCAGGACGTAAACCTCACTT+CGG - chr6_1:96852282-96852301 Msa0900630:intron 50.0%
CCTACTAGTGAACCGAAGTG+AGG + chr6_1:96852297-96852316 None:intergenic 50.0%
CCTCACTTCGGTTCACTAGT+AGG - chr6_1:96852294-96852313 Msa0900630:intron 50.0%
!! GGACAATGGTCTTTTGGGAG+TGG - chr6_1:96852315-96852334 Msa0900630:intron 50.0%
!! GGTCTTTTGGGAGTGGTGTA+AGG - chr6_1:96852322-96852341 Msa0900630:intron 50.0%
TGATGAGCTCGATAGACGGA+TGG + chr6_1:96853874-96853893 None:intergenic 50.0%
TCTCATGCACGATGCACACA+AGG + chr6_1:96854299-96854318 Msa0900640:CDS 50.0%
! TCACCGTTGGTGTTTCAGTG+AGG + chr6_1:96854494-96854513 Msa0900640:CDS 50.0%
TGTTGGGGTATAGTCACCGT+TGG + chr6_1:96854507-96854526 Msa0900640:CDS 50.0%
AACACGGCCACAAAGTTGTC+TGG - chr6_1:96854556-96854575 Msa0900630:intron 50.0%
! GAAGCTCTAGCAATAGGAGG+AGG - chr6_1:96855583-96855602 Msa0900630:intron 50.0%
GACAAAAGGGAGGGTTTGGA+AGG - chr6_1:96855622-96855641 Msa0900630:intron 50.0%
GAAGGAGAGTGAGAGTAAGG+AGG - chr6_1:96855679-96855698 Msa0900630:intron 50.0%
CTCAGTAGACGGATACACCA+CGG + chr6_1:96857975-96857994 Msa0900650:CDS 50.0%
AGCTCGCCGTAGTTATCATC+AGG - chr6_1:96857993-96858012 Msa0900630:intron 50.0%
GGAACGATGCAGTTGGGTTA+TGG - chr6_1:96858809-96858828 Msa0900630:intron 50.0%
GCGTGATGGCAGATTCTATC+AGG - chr6_1:96858841-96858860 Msa0900630:intron 50.0%
! CCACATGGGGCATTTAGAAG+AGG + chr6_1:96859752-96859771 Msa0900650:intron 50.0%
CCTCTTCTAAATGCCCCATG+TGG - chr6_1:96859749-96859768 Msa0900630:intron 50.0%
GCTATAGCACTGTTGCCTAG+TGG - chr6_1:96859915-96859934 Msa0900630:intron 50.0%
CGGTGTGTTCAAACTCCACT+AGG + chr6_1:96859933-96859952 Msa0900650:intron 50.0%
AGGAGGACAAACTACTGCGT+TGG - chr6_1:96860315-96860334 Msa0900630:intron 50.0%
!! CAAACTACTGCGTTGGCTAC+TGG - chr6_1:96860322-96860341 Msa0900630:intron 50.0%
GTATCACTATCCTCGCCATC+AGG + chr6_1:96860434-96860453 Msa0900650:intron 50.0%
GGCGAGGATAGTGATACAGA+CGG - chr6_1:96860437-96860456 Msa0900630:intron 50.0%
CTTGAGCTAATCCGATCACC+TGG - chr6_1:96860741-96860760 Msa0900630:intron 50.0%
GTGCTCTTCCTTGAGGTCTC+AGG - chr6_1:96850619-96850638 Msa0900630:intron 55.0%
! GAAGCTCTAGCAACAGGAGG+AGG - chr6_1:96851802-96851821 Msa0900630:intron 55.0%
CGCTGACGAAAGGGAAGGTT+TGG - chr6_1:96851837-96851856 Msa0900630:intron 55.0%
! GAGAGTGTATACGGCGACGA+AGG - chr6_1:96851865-96851884 Msa0900630:intron 55.0%
GAGTGTATACGGCGACGAAG+GGG - chr6_1:96851867-96851886 Msa0900630:intron 55.0%
! GCAAAAGGTCAAGGGTGTGC+TGG - chr6_1:96854783-96854802 Msa0900630:intron 55.0%
! GCAATAGGAGGAGGCGTAGA+TGG - chr6_1:96855592-96855611 Msa0900630:intron 55.0%
TGGAGACGCTGACAAAAGGG+AGG - chr6_1:96855612-96855631 Msa0900630:intron 55.0%
GGAGACGCTGACAAAAGGGA+GGG - chr6_1:96855613-96855632 Msa0900630:intron 55.0%
CGCTGACAAAAGGGAGGGTT+TGG - chr6_1:96855618-96855637 Msa0900630:intron 55.0%
!! TTTTGAGGGGCGGAGTAAGG+AGG + chr6_1:96857755-96857774 Msa0900650:CDS 55.0%
!! GGATTTTGAGGGGCGGAGTA+AGG + chr6_1:96857758-96857777 Msa0900650:CDS 55.0%
GTATCAACTCAACAGCGCCG+TGG - chr6_1:96857955-96857974 Msa0900630:intron 55.0%
ACTACGGCGAGCTCAGTAGA+CGG + chr6_1:96857986-96858005 Msa0900650:CDS 55.0%
GAGCTAATCCGATCACCTGG+TGG - chr6_1:96860744-96860763 Msa0900630:intron 55.0%
TCTCCGTCTACTGAGCTCGC+CGG - chr6_1:96849023-96849042 Msa0900630:three_prime_UTR 60.0%
ACTCCGGCGAGCTCAGTAGA+CGG + chr6_1:96849029-96849048 None:intergenic 60.0%
TCAGCGGCAGAGAGTTGCAC+TGG - chr6_1:96851151-96851170 Msa0900630:exon 60.0%
! CGGCAGAGAGTTGCACTGGT+TGG - chr6_1:96851155-96851174 Msa0900630:exon 60.0%
! GCAACAGGAGGAGGCGTAGA+TGG - chr6_1:96851811-96851830 Msa0900630:intron 60.0%
GGAGACGCTGACGAAAGGGA+AGG - chr6_1:96851832-96851851 Msa0900630:intron 60.0%
TGTATACGGCGACGAAGGGG+AGG - chr6_1:96851870-96851889 Msa0900630:intron 60.0%
GTATACGGCGACGAAGGGGA+GGG - chr6_1:96851871-96851890 Msa0900630:intron 60.0%
GACGAAGGGGAGGGTTTGGA+AGG - chr6_1:96851880-96851899 Msa0900630:intron 60.0%
! GGAGAGAGTGTAGACGGCGA+CGG - chr6_1:96855643-96855662 Msa0900630:intron 60.0%
AGAGTGTAGACGGCGACGGA+GGG - chr6_1:96855647-96855666 Msa0900630:intron 60.0%
! GAGAGTGTAGACGGCGACGG+AGG - chr6_1:96855646-96855665 Msa0900630:intron 65.0%
GAGTGTAGACGGCGACGGAG+GGG - chr6_1:96855648-96855667 Msa0900630:intron 65.0%
GACGGAGGGGAGGGTTTGGA+AGG - chr6_1:96855661-96855680 Msa0900630:intron 65.0%
CGGCGACGAAGGGGAGGGTT+TGG - chr6_1:96851876-96851895 Msa0900630:intron 70.0%
TGTAGACGGCGACGGAGGGG+AGG - chr6_1:96855651-96855670 Msa0900630:intron 70.0%
GTAGACGGCGACGGAGGGGA+GGG - chr6_1:96855652-96855671 Msa0900630:intron 70.0%
CGGCGACGGAGGGGAGGGTT+TGG - chr6_1:96855657-96855676 Msa0900630:intron 75.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 96848970 96860869 96848970 ID=Msa0900630;Name=Msa0900630
chr6_1 mRNA 96848970 96860869 96848970 ID=Msa0900630-mRNA-1;Parent=Msa0900630;Name=Msa0900630-mRNA-1;_AED=0.04;_eAED=0.04;_QI=132|1|1|1|0.5|0.33|3|358|148
chr6_1 exon 96848970 96849591 96848970 ID=Msa0900630-mRNA-1:exon:16805;Parent=Msa0900630-mRNA-1
chr6_1 exon 96850977 96851182 96850977 ID=Msa0900630-mRNA-1:exon:16804;Parent=Msa0900630-mRNA-1
chr6_1 exon 96860761 96860869 96860761 ID=Msa0900630-mRNA-1:exon:16803;Parent=Msa0900630-mRNA-1
chr6_1 five_prime_UTR 96860761 96860869 96860761 ID=Msa0900630-mRNA-1:five_prime_utr;Parent=Msa0900630-mRNA-1
chr6_1 five_prime_UTR 96851160 96851182 96851160 ID=Msa0900630-mRNA-1:five_prime_utr;Parent=Msa0900630-mRNA-1
chr6_1 CDS 96850977 96851159 96850977 ID=Msa0900630-mRNA-1:cds;Parent=Msa0900630-mRNA-1
chr6_1 CDS 96849328 96849591 96849328 ID=Msa0900630-mRNA-1:cds;Parent=Msa0900630-mRNA-1
chr6_1 three_prime_UTR 96848970 96849327 96848970 ID=Msa0900630-mRNA-1:three_prime_utr;Parent=Msa0900630-mRNA-1
Gene Sequence

>Msa0900630

ATGCCACCTTATGATTGCATGCTTTTGTTCAAGCCGAATGTGAAAAAAGAAGCTCTAATTGGTTTAGTTTCAAGGATTGGGAAACATGTGTGTAAAAGAAATGGGGTTGTCACTGAGGTTAAGAGTTTTGGAACGATGCAGTTGGGTTATGGTGTGAAAAAGCGTGATGGCAGATTCTATCAGGGCCAAATGATGCAAGTGAGCATGATGGCTACACCCGAAATCAACAAAGAGCTGCATTACCTAAACAAGGAGGACAAACTACTGCGTTGGCTACTGGTTAAGCAGCGTGACACAAAAATTGGGCTTGAGTTCATGGGAGATGAAGGTAGATTCGAGCTAAACAGATTCTCTGAAATAAATAGACCTGATGGCGAGGATAGTGATACAGACGGAGATGATGATGATGAATATGAAGTGAATGAAGAAGTAAATAAAGTGAACTAA

Protein sequence

>Msa0900630

MPPYDCMLLFKPNVKKEALIGLVSRIGKHVCKRNGVVTEVKSFGTMQLGYGVKKRDGRFYQGQMMQVSMMATPEINKELHYLNKEDKLLRWLLVKQRDTKIGLEFMGDEGRFELNRFSEINRPDGEDSDTDGDDDDEYEVNEEVNKVN*