Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0806900 | XP_024639624.1 | 100.000 | 156 | 0 | 0 | 1 | 156 | 313 | 468 | 2.58e-101 | 308 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0806900 | sp|Q7X7S8|COLD1_ORYSJ | 85.897 | 156 | 22 | 0 | 1 | 156 | 313 | 468 | 1.19e-89 | 271 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0806900 | A0A396HIW2 | 100.000 | 156 | 0 | 0 | 1 | 156 | 313 | 468 | 1.67e-101 | 309 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0752000 | Msa0806900 | 0.818570 | 1.829446e-52 | -8.615850e-47 |
| Msa0797990 | Msa0806900 | 0.837418 | 5.259657e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0806900 | MtrunA17_Chr5g0393971 | 100.000 | 156 | 0 | 0 | 1 | 156 | 313 | 468 | 3.22e-105 | 309 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0806900 | AT1G64990.1 | 87.821 | 156 | 19 | 0 | 1 | 156 | 313 | 468 | 1.64e-82 | 251 |
| Msa0806900 | AT1G64990.2 | 87.821 | 156 | 19 | 0 | 1 | 156 | 313 | 468 | 1.64e-82 | 251 |
| Msa0806900 | AT4G27630.6 | 91.667 | 156 | 13 | 0 | 1 | 156 | 193 | 348 | 2.82e-80 | 241 |
| Msa0806900 | AT4G27630.1 | 91.667 | 156 | 13 | 0 | 1 | 156 | 193 | 348 | 2.82e-80 | 241 |
| Msa0806900 | AT4G27630.2 | 91.667 | 156 | 13 | 0 | 1 | 156 | 312 | 467 | 1.60e-78 | 240 |
| Msa0806900 | AT4G27630.3 | 91.667 | 156 | 13 | 0 | 1 | 156 | 336 | 491 | 2.43e-78 | 240 |
| Msa0806900 | AT4G27630.5 | 88.710 | 62 | 7 | 0 | 1 | 62 | 193 | 254 | 9.40e-31 | 112 |
| Msa0806900 | AT4G27630.7 | 88.710 | 62 | 7 | 0 | 1 | 62 | 312 | 373 | 1.28e-29 | 111 |
| Msa0806900 | AT4G27630.4 | 88.710 | 62 | 7 | 0 | 1 | 62 | 312 | 373 | 1.32e-29 | 111 |
Find 57 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTGGATGTTTATCAATT+TGG | 0.155871 | 5_3:-27644004 | None:intergenic |
| TCACATTGACAATTATTTAA+AGG | 0.188036 | 5_3:+27644851 | Msa0806900:three_prime_UTR |
| ATATTTCCCGGCAGCAAATT+TGG | 0.268611 | 5_3:-27644502 | None:intergenic |
| AATTTGGTCCTCGTTGTTAA+AGG | 0.273017 | 5_3:-27644486 | None:intergenic |
| ACCGGTGATAAAAGTCAAAT+TGG | 0.292591 | 5_3:-27643911 | None:intergenic |
| GACACTAACCTGAGATAATA+AGG | 0.315088 | 5_3:-27641489 | None:intergenic |
| TAGAAACTATACATGTATAT+AGG | 0.338300 | 5_3:-27644161 | None:intergenic |
| TGCTGCCGGGAAATATTTGC+AGG | 0.348392 | 5_3:+27644509 | Msa0806900:three_prime_UTR |
| GATTATCATTACAGAGGTAT+TGG | 0.353524 | 5_3:+27643878 | Msa0806900:CDS |
| GCACATACTGCCAAGTCTAT+TGG | 0.358239 | 5_3:+27644378 | Msa0806900:three_prime_UTR |
| AACACACTTATACCTGTATT+CGG | 0.368811 | 5_3:-27643202 | None:intergenic |
| AGAAACTATACATGTATATA+GGG | 0.386494 | 5_3:-27644160 | None:intergenic |
| ATTATCATTACAGAGGTATT+GGG | 0.393721 | 5_3:+27643879 | Msa0806900:CDS |
| TTCTCATTGATGATCTCTTC+CGG | 0.407244 | 5_3:-27644323 | None:intergenic |
| GCATAATATCAATTTACAAA+AGG | 0.410480 | 5_3:-27644606 | None:intergenic |
| CGGTTGATTTCAGTTTGGTT+CGG | 0.422332 | 5_3:-27644439 | None:intergenic |
| ATTTGGTCCTCGTTGTTAAA+GGG | 0.426086 | 5_3:-27644485 | None:intergenic |
| CATAATATCAATTTACAAAA+GGG | 0.436626 | 5_3:-27644605 | None:intergenic |
| GTGAACTTTAAAAGTAGGTT+CGG | 0.441147 | 5_3:-27644459 | None:intergenic |
| ATGGTCCTGCAAATATTTCC+CGG | 0.445847 | 5_3:-27644514 | None:intergenic |
| TATATTTCCTTGCTATTCAT+CGG | 0.456786 | 5_3:+27642409 | Msa0806900:CDS |
| AAATGCAGCCTTATTATCTC+AGG | 0.465152 | 5_3:+27641481 | Msa0806900:CDS |
| ATTCTTAACAAATTTAATGA+AGG | 0.466176 | 5_3:+27642459 | Msa0806900:CDS |
| AAAGCTTAGCAACCGAATAC+AGG | 0.469068 | 5_3:+27643190 | Msa0806900:CDS |
| GGTTTGTGAACTTTAAAAGT+AGG | 0.482311 | 5_3:-27644464 | None:intergenic |
| CTTGCTATTCATCGGAATGT+TGG | 0.489185 | 5_3:+27642417 | Msa0806900:CDS |
| TTAAATAATTGTCAATGTGA+AGG | 0.493347 | 5_3:-27644848 | None:intergenic |
| AAGTTACACTCACAATCAAT+TGG | 0.502259 | 5_3:-27644020 | None:intergenic |
| AGATACAATGCAATATAATA+CGG | 0.512261 | 5_3:-27644783 | None:intergenic |
| GCTGTTTCAAGAGTTGGAAG+TGG | 0.519122 | 5_3:+27643090 | Msa0806900:CDS |
| AATGCGCAGATAGTAAAAGT+AGG | 0.522155 | 5_3:-27643971 | None:intergenic |
| AGGTTCGGTTGATTTCAGTT+TGG | 0.526179 | 5_3:-27644444 | None:intergenic |
| GTGGTTTGATGCAATATTTG+TGG | 0.542218 | 5_3:+27643932 | Msa0806900:CDS |
| CTATTGGAATATCCATGTCT+AGG | 0.545109 | 5_3:+27644394 | Msa0806900:three_prime_UTR |
| AAAATATGTTCCCATTATCT+CGG | 0.545480 | 5_3:-27643142 | None:intergenic |
| CATGGATATTCCAATAGACT+TGG | 0.545545 | 5_3:-27644388 | None:intergenic |
| ACGAGGACCAAATTTGCTGC+CGG | 0.548053 | 5_3:+27644495 | Msa0806900:three_prime_UTR |
| ATTGTATCTTCAGACTTCAC+AGG | 0.551705 | 5_3:+27644797 | Msa0806900:three_prime_UTR |
| CGAGGACCAAATTTGCTGCC+GGG | 0.553919 | 5_3:+27644496 | Msa0806900:three_prime_UTR |
| ATGCGCAGATAGTAAAAGTA+GGG | 0.557128 | 5_3:-27643970 | None:intergenic |
| TGCAATATAATACGGATACA+TGG | 0.565878 | 5_3:-27644775 | None:intergenic |
| ATACTTATCATCCTTGTCAC+GGG | 0.571650 | 5_3:-27641431 | None:intergenic |
| GGGTCTAAGTTGTGTTGTGT+TGG | 0.574357 | 5_3:+27644705 | Msa0806900:three_prime_UTR |
| TATACTTATCATCCTTGTCA+CGG | 0.589557 | 5_3:-27641432 | None:intergenic |
| CAGATAGTAAAAGTAGGGAA+AGG | 0.591096 | 5_3:-27643965 | None:intergenic |
| TGCTGACTAGAAATTCATAC+CGG | 0.595756 | 5_3:+27644304 | Msa0806900:three_prime_UTR |
| TTAGACCCGTAAATAAAACT+AGG | 0.601286 | 5_3:-27644690 | None:intergenic |
| TAAAATGTTTCGTCAAACAA+TGG | 0.606340 | 5_3:-27644533 | None:intergenic |
| CAAATATTGCATCAAACCAC+CGG | 0.610784 | 5_3:-27643929 | None:intergenic |
| GGAAGAGATCATCAATGAGA+AGG | 0.619170 | 5_3:+27644325 | Msa0806900:three_prime_UTR |
| GTTCAGTTGATCCCGTGACA+AGG | 0.624543 | 5_3:+27641420 | Msa0806900:CDS |
| CAACATTCCGATGAATAGCA+AGG | 0.630088 | 5_3:-27642416 | None:intergenic |
| ATCATTACAGAGGTATTGGG+CGG | 0.644393 | 5_3:+27643882 | Msa0806900:CDS |
| ATAGTTTCTACTGCAACGAA+AGG | 0.645020 | 5_3:+27644174 | Msa0806900:three_prime_UTR |
| TGACAGGATTATCATTACAG+AGG | 0.676858 | 5_3:+27643872 | Msa0806900:intron |
| TTGGTTGTGATATCAGTGCG+TGG | 0.694691 | 5_3:+27642436 | Msa0806900:CDS |
| TCACAAACCCTTTAACAACG+AGG | 0.764309 | 5_3:+27644478 | Msa0806900:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATCAAATAGAAAAAAAT+AGG | - | chr5_3:27642523-27642542 | None:intergenic | 10.0% |
| !! | AAAAGAATAAAATATGATAT+AGG | + | chr5_3:27642662-27642681 | Msa0806900:intron | 10.0% |
| !! | AAAGAAAATTATTGAATATA+AGG | + | chr5_3:27642820-27642839 | Msa0806900:intron | 10.0% |
| !! | GGAAAAAAAGTAATTATATT+TGG | - | chr5_3:27641333-27641352 | None:intergenic | 15.0% |
| !! | ATATTTATCCTAATCAATTT+AGG | - | chr5_3:27641680-27641699 | None:intergenic | 15.0% |
| !! | TATAAACAAAAAGAATTCTT+AGG | - | chr5_3:27642038-27642057 | None:intergenic | 15.0% |
| !!! | TTATCATTATTTTTTACCTT+AGG | + | chr5_3:27642181-27642200 | Msa0806900:intron | 15.0% |
| !! | ATTCTTAACAAATTTAATGA+AGG | + | chr5_3:27642459-27642478 | Msa0806900:CDS | 15.0% |
| !!! | TTTTTCTATTTGATATTTCT+TGG | + | chr5_3:27642526-27642545 | Msa0806900:intron | 15.0% |
| !!! | AATATTTTAATTGATATGCA+TGG | + | chr5_3:27643357-27643376 | Msa0806900:intron | 15.0% |
| !!! | TAAATTTATTTGATAACTGA+TGG | + | chr5_3:27644249-27644268 | Msa0806900:intron | 15.0% |
| !! | AAATGAAAAACAATATTAAC+AGG | + | chr5_3:27644565-27644584 | Msa0806900:three_prime_UTR | 15.0% |
| !! | AATGAAAAACAATATTAACA+GGG | + | chr5_3:27644566-27644585 | Msa0806900:three_prime_UTR | 15.0% |
| !! | CATAATATCAATTTACAAAA+GGG | - | chr5_3:27644608-27644627 | None:intergenic | 15.0% |
| !!! | TTTTAACCTAGTTTTATTTA+CGG | + | chr5_3:27644684-27644703 | Msa0806900:three_prime_UTR | 15.0% |
| !!! | ATACACAATTTTAGAAATAT+AGG | - | chr5_3:27644755-27644774 | None:intergenic | 15.0% |
| !! | TCTTTAAATAAGAATGCATT+AGG | - | chr5_3:27641558-27641577 | None:intergenic | 20.0% |
| !! | AGCAACAAAAAAGAAATTTA+AGG | - | chr5_3:27641777-27641796 | None:intergenic | 20.0% |
| !!! | AATACATATTGGAAGTTTTA+AGG | + | chr5_3:27642608-27642627 | Msa0806900:intron | 20.0% |
| !!! | TTCTTTTGTTTTATTTAAGC+TGG | - | chr5_3:27642967-27642986 | None:intergenic | 20.0% |
| !! | CAAAACAAAAATTTGAACTT+AGG | - | chr5_3:27643053-27643072 | None:intergenic | 20.0% |
| !!! | CTAAGTTCAAATTTTTGTTT+TGG | + | chr5_3:27643051-27643070 | Msa0806900:intron | 20.0% |
| !!! | TATCTTCTATTCTTTTAATC+AGG | + | chr5_3:27643166-27643185 | Msa0806900:CDS | 20.0% |
| !! | AAATCAGAAATACTGAATTT+AGG | + | chr5_3:27643405-27643424 | Msa0806900:intron | 20.0% |
| !! | TATTATTCATATATTGTCTC+CGG | - | chr5_3:27643453-27643472 | None:intergenic | 20.0% |
| !! | GAGACAATATATGAATAATA+GGG | + | chr5_3:27643453-27643472 | Msa0806900:intron | 20.0% |
| !! | TAGATATAAATAGGATTGAA+AGG | - | chr5_3:27643662-27643681 | None:intergenic | 20.0% |
| !! | CTGAATGTATAGATATAAAT+AGG | - | chr5_3:27643671-27643690 | None:intergenic | 20.0% |
| !! | TGTTTATTTCAATGTAAAAC+AGG | + | chr5_3:27644126-27644145 | Msa0806900:intron | 20.0% |
| !! | AGAAACTATACATGTATATA+GGG | - | chr5_3:27644163-27644182 | None:intergenic | 20.0% |
| !! | TAGAAACTATACATGTATAT+AGG | - | chr5_3:27644164-27644183 | None:intergenic | 20.0% |
| !! | GCATAATATCAATTTACAAA+AGG | - | chr5_3:27644609-27644628 | None:intergenic | 20.0% |
| !!! | TTTAACCTAGTTTTATTTAC+GGG | + | chr5_3:27644685-27644704 | Msa0806900:three_prime_UTR | 20.0% |
| !! | AGATACAATGCAATATAATA+CGG | - | chr5_3:27644786-27644805 | None:intergenic | 20.0% |
| !! | TTAAATAATTGTCAATGTGA+AGG | - | chr5_3:27644851-27644870 | None:intergenic | 20.0% |
| !! | TCACATTGACAATTATTTAA+AGG | + | chr5_3:27644851-27644870 | Msa0806900:three_prime_UTR | 20.0% |
| !! | CTGATAATGTGTTTCAATAT+AGG | + | chr5_3:27641394-27641413 | Msa0806900:intron | 25.0% |
| !!! | TTCCTACAGTTTTTTGATAT+AGG | + | chr5_3:27641455-27641474 | Msa0806900:CDS | 25.0% |
| ! | TTCCTATATCAAAAAACTGT+AGG | - | chr5_3:27641460-27641479 | None:intergenic | 25.0% |
| ! | TAAGAATGCATTAGGTTTAA+GGG | - | chr5_3:27641550-27641569 | None:intergenic | 25.0% |
| ! | ATAAGAATGCATTAGGTTTA+AGG | - | chr5_3:27641551-27641570 | None:intergenic | 25.0% |
| ! | CAAAGACATAAAATAGTGAA+TGG | - | chr5_3:27641746-27641765 | None:intergenic | 25.0% |
| ! | TATAAACCCATTTGATATCT+TGG | + | chr5_3:27641931-27641950 | Msa0806900:intron | 25.0% |
| ! | TAAGTTCCAAGATATCAAAT+GGG | - | chr5_3:27641940-27641959 | None:intergenic | 25.0% |
| ! | ATAAGTTCCAAGATATCAAA+TGG | - | chr5_3:27641941-27641960 | None:intergenic | 25.0% |
| ! | TCTTAGGAAATTACATTCAA+TGG | - | chr5_3:27642022-27642041 | None:intergenic | 25.0% |
| ! | TCATGTGAAACTTTCTTATT+TGG | + | chr5_3:27642068-27642087 | Msa0806900:intron | 25.0% |
| ! | TATTCTGTTATGATCATATG+CGG | + | chr5_3:27642106-27642125 | Msa0806900:intron | 25.0% |
| ! | ATACAAATTCTAGTCAACAA+AGG | - | chr5_3:27642334-27642353 | None:intergenic | 25.0% |
| !! | TTTGTTGACTAGAATTTGTA+TGG | + | chr5_3:27642333-27642352 | Msa0806900:intron | 25.0% |
| !!! | TATATTTCCTTGCTATTCAT+CGG | + | chr5_3:27642409-27642428 | Msa0806900:CDS | 25.0% |
| ! | ACCATTTACGAAATACATAT+TGG | + | chr5_3:27642597-27642616 | Msa0806900:intron | 25.0% |
| ! | TCCAATATGTATTTCGTAAA+TGG | - | chr5_3:27642601-27642620 | None:intergenic | 25.0% |
| ! | AATGAATAATATACCTCTTC+TGG | + | chr5_3:27642729-27642748 | Msa0806900:intron | 25.0% |
| ! | AGAGCATATCAATATTGTTT+GGG | - | chr5_3:27642776-27642795 | None:intergenic | 25.0% |
| !! | AAGAGCATATCAATATTGTT+TGG | - | chr5_3:27642777-27642796 | None:intergenic | 25.0% |
| !!! | CTTGTTATTTTTCAACTTGA+CGG | - | chr5_3:27642992-27643011 | None:intergenic | 25.0% |
| ! | AAAATATGTTCCCATTATCT+CGG | - | chr5_3:27643145-27643164 | None:intergenic | 25.0% |
| ! | AATAAATAGTTTCTGTTGAG+TGG | - | chr5_3:27643262-27643281 | None:intergenic | 25.0% |
| !! | TTTATTCCTTTCTTGTTTAC+TGG | + | chr5_3:27643276-27643295 | Msa0806900:intron | 25.0% |
| ! | GGAGACAATATATGAATAAT+AGG | + | chr5_3:27643452-27643471 | Msa0806900:intron | 25.0% |
| ! | ATTCATATTCTCCATGAAAA+TGG | - | chr5_3:27643577-27643596 | None:intergenic | 25.0% |
| ! | AAGGTTTACTTAAACGTTAT+TGG | - | chr5_3:27643643-27643662 | None:intergenic | 25.0% |
| !! | ATTGTTTAGAATTCAACTCA+AGG | + | chr5_3:27643704-27643723 | Msa0806900:intron | 25.0% |
| !!! | TGTGTTGATTGATTCAAATT+TGG | + | chr5_3:27643768-27643787 | Msa0806900:intron | 25.0% |
| !!! | ATTATCATTACAGAGGTATT+GGG | + | chr5_3:27643879-27643898 | Msa0806900:CDS | 25.0% |
| ! | CAATTGGATGTTTATCAATT+TGG | - | chr5_3:27644007-27644026 | None:intergenic | 25.0% |
| !!! | ATATGAGCTAATCCTTTTTT+AGG | + | chr5_3:27644049-27644068 | Msa0806900:intron | 25.0% |
| ! | TAATTCACAATGCCTAAAAA+AGG | - | chr5_3:27644064-27644083 | None:intergenic | 25.0% |
| ! | TTTAAATGCATCAATCTAGA+AGG | - | chr5_3:27644233-27644252 | None:intergenic | 25.0% |
| ! | TAAAATGTTTCGTCAAACAA+TGG | - | chr5_3:27644536-27644555 | None:intergenic | 25.0% |
| !! | CAAAAGGGTTAAAGAATTTT+TGG | - | chr5_3:27644593-27644612 | None:intergenic | 25.0% |
| ATGAGATTCAGACTAAAAGA+TGG | - | chr5_3:27641354-27641373 | None:intergenic | 30.0% | |
| TAATGTGTTTCAATATAGGC+TGG | + | chr5_3:27641398-27641417 | Msa0806900:intron | 30.0% | |
| TATACTTATCATCCTTGTCA+CGG | - | chr5_3:27641435-27641454 | None:intergenic | 30.0% | |
| TTGCATTGTAGAATAGATGA+TGG | + | chr5_3:27641515-27641534 | Msa0806900:intron | 30.0% | |
| !!! | CTTTTTTGTTGCTTTGTATG+AGG | + | chr5_3:27641784-27641803 | Msa0806900:intron | 30.0% |
| CTTGTTTACTGAAGAATGTA+AGG | + | chr5_3:27641826-27641845 | Msa0806900:intron | 30.0% | |
| TAATAGAGATCTCAGTACAA+TGG | - | chr5_3:27641904-27641923 | None:intergenic | 30.0% | |
| GTACATGTGATAAGTAACTA+GGG | - | chr5_3:27642146-27642165 | None:intergenic | 30.0% | |
| AGTACATGTGATAAGTAACT+AGG | - | chr5_3:27642147-27642166 | None:intergenic | 30.0% | |
| ! | AAAGCACCACATATAAACTA+GGG | - | chr5_3:27642247-27642266 | None:intergenic | 30.0% |
| ATTCTAGTCAACAAAGGAAA+AGG | - | chr5_3:27642328-27642347 | None:intergenic | 30.0% | |
| TATTTCTTGGATAGTTGCTA+AGG | + | chr5_3:27642539-27642558 | Msa0806900:intron | 30.0% | |
| ! | ATTCTTTTGTATATCATCCC+AGG | - | chr5_3:27642650-27642669 | None:intergenic | 30.0% |
| ! | ATCAATATTGTTTGGGACTT+GGG | - | chr5_3:27642769-27642788 | None:intergenic | 30.0% |
| ! | TATCAATATTGTTTGGGACT+TGG | - | chr5_3:27642770-27642789 | None:intergenic | 30.0% |
| CATTATTTCAGTGGTGATAA+GGG | - | chr5_3:27642925-27642944 | None:intergenic | 30.0% | |
| !! | CGTCAAGTTGAAAAATAACA+AGG | + | chr5_3:27642990-27643009 | Msa0806900:intron | 30.0% |
| !!! | TTTTTTGCTGTTTCAAGAGT+TGG | + | chr5_3:27643084-27643103 | Msa0806900:CDS | 30.0% |
| AACACACTTATACCTGTATT+CGG | - | chr5_3:27643205-27643224 | None:intergenic | 30.0% | |
| ! | ATACAGGTATAAGTGTGTTT+TGG | + | chr5_3:27643206-27643225 | Msa0806900:intron | 30.0% |
| ! | TTCAGTATTTCTGATTTAGC+AGG | - | chr5_3:27643402-27643421 | None:intergenic | 30.0% |
| TATGAATAATAGGGTAAGAG+AGG | + | chr5_3:27643462-27643481 | Msa0806900:intron | 30.0% | |
| !!! | CAAGATTTGTTTTGACAGAA+TGG | + | chr5_3:27643507-27643526 | Msa0806900:intron | 30.0% |
| GTGTAGGAATAGTTATAGTT+TGG | + | chr5_3:27643794-27643813 | Msa0806900:intron | 30.0% | |
| ATAGTTTGGATAAACATCCT+AGG | + | chr5_3:27643808-27643827 | Msa0806900:intron | 30.0% | |
| ! | GATTATCATTACAGAGGTAT+TGG | + | chr5_3:27643878-27643897 | Msa0806900:CDS | 30.0% |
| !! | TCCAATTTGACTTTTATCAC+CGG | + | chr5_3:27643910-27643929 | Msa0806900:CDS | 30.0% |
| AAGTTACACTCACAATCAAT+TGG | - | chr5_3:27644023-27644042 | None:intergenic | 30.0% | |
| ! | GTGAACTTTAAAAGTAGGTT+CGG | - | chr5_3:27644462-27644481 | None:intergenic | 30.0% |
| ! | GGTTTGTGAACTTTAAAAGT+AGG | - | chr5_3:27644467-27644486 | None:intergenic | 30.0% |
| !! | TTGACGAAACATTTTAGAGA+AGG | + | chr5_3:27644540-27644559 | Msa0806900:three_prime_UTR | 30.0% |
| TTAGACCCGTAAATAAAACT+AGG | - | chr5_3:27644693-27644712 | None:intergenic | 30.0% | |
| !!! | CACAGCACAATTTTTTTGAA+TGG | - | chr5_3:27644731-27644750 | None:intergenic | 30.0% |
| TGCAATATAATACGGATACA+TGG | - | chr5_3:27644778-27644797 | None:intergenic | 30.0% | |
| !!! | GCAAAGTGTTGTTTTCAAAC+AGG | + | chr5_3:27641272-27641291 | Msa0806900:CDS | 35.0% |
| ATACTTATCATCCTTGTCAC+GGG | - | chr5_3:27641434-27641453 | None:intergenic | 35.0% | |
| !! | AAATGCAGCCTTATTATCTC+AGG | + | chr5_3:27641481-27641500 | Msa0806900:CDS | 35.0% |
| GACACTAACCTGAGATAATA+AGG | - | chr5_3:27641492-27641511 | None:intergenic | 35.0% | |
| CATCTATTCTACAATGCAAC+TGG | - | chr5_3:27641514-27641533 | None:intergenic | 35.0% | |
| TATGAGCTGACGTTATTAAG+TGG | + | chr5_3:27641622-27641641 | Msa0806900:intron | 35.0% | |
| ATGAGCTGACGTTATTAAGT+GGG | + | chr5_3:27641623-27641642 | Msa0806900:intron | 35.0% | |
| GCATGTGTCCTAAATTGATT+AGG | + | chr5_3:27641669-27641688 | Msa0806900:intron | 35.0% | |
| ATAATGAAGTTGACTGCCTA+AGG | - | chr5_3:27642200-27642219 | None:intergenic | 35.0% | |
| !! | GAAAGCACCACATATAAACT+AGG | - | chr5_3:27642248-27642267 | None:intergenic | 35.0% |
| !! | GGCATTTTCGATCTTTTTTG+TGG | + | chr5_3:27642560-27642579 | Msa0806900:intron | 35.0% |
| TATTTCGTAAATGGTTACGC+TGG | - | chr5_3:27642592-27642611 | None:intergenic | 35.0% | |
| GAGTAGACAATTTACATTCC+TGG | + | chr5_3:27642686-27642705 | Msa0806900:intron | 35.0% | |
| ATTATTCCTTTATCCATGCC+AGG | - | chr5_3:27642707-27642726 | None:intergenic | 35.0% | |
| AAATGTCCACTTTGACAGAA+TGG | + | chr5_3:27642875-27642894 | Msa0806900:intron | 35.0% | |
| CCATTATTTCAGTGGTGATA+AGG | - | chr5_3:27642926-27642945 | None:intergenic | 35.0% | |
| CCTTATCACCACTGAAATAA+TGG | + | chr5_3:27642923-27642942 | Msa0806900:intron | 35.0% | |
| !!! | TCTGTTTTTGTCCGAGATAA+TGG | + | chr5_3:27643131-27643150 | Msa0806900:CDS | 35.0% |
| !!! | CTGTTTTTGTCCGAGATAAT+GGG | + | chr5_3:27643132-27643151 | Msa0806900:CDS | 35.0% |
| AATAGTTTCTGTTGAGTGGA+TGG | - | chr5_3:27643258-27643277 | None:intergenic | 35.0% | |
| CTAATGCACAGATTACTAGT+AGG | - | chr5_3:27643336-27643355 | None:intergenic | 35.0% | |
| CGAGAGAAAAGTGAAACATA+AGG | + | chr5_3:27643545-27643564 | Msa0806900:intron | 35.0% | |
| !!! | TAAGGTTGTTGCCATTTTCA+TGG | + | chr5_3:27643563-27643582 | Msa0806900:intron | 35.0% |
| AGATAAATGCTGATCATCCT+AGG | - | chr5_3:27643828-27643847 | None:intergenic | 35.0% | |
| TCTGATCTGAATTCATTGAC+AGG | + | chr5_3:27643856-27643875 | Msa0806900:intron | 35.0% | |
| TGACAGGATTATCATTACAG+AGG | + | chr5_3:27643872-27643891 | Msa0806900:intron | 35.0% | |
| ACCGGTGATAAAAGTCAAAT+TGG | - | chr5_3:27643914-27643933 | None:intergenic | 35.0% | |
| !! | AATTTGACTTTTATCACCGG+TGG | + | chr5_3:27643913-27643932 | Msa0806900:CDS | 35.0% |
| CAAATATTGCATCAAACCAC+CGG | - | chr5_3:27643932-27643951 | None:intergenic | 35.0% | |
| GTGGTTTGATGCAATATTTG+TGG | + | chr5_3:27643932-27643951 | Msa0806900:CDS | 35.0% | |
| CAGATAGTAAAAGTAGGGAA+AGG | - | chr5_3:27643968-27643987 | None:intergenic | 35.0% | |
| ATGCGCAGATAGTAAAAGTA+GGG | - | chr5_3:27643973-27643992 | None:intergenic | 35.0% | |
| AATGCGCAGATAGTAAAAGT+AGG | - | chr5_3:27643974-27643993 | None:intergenic | 35.0% | |
| ATAGTTTCTACTGCAACGAA+AGG | + | chr5_3:27644174-27644193 | Msa0806900:three_prime_UTR | 35.0% | |
| !! | ATTTCTAGTCAGCAATTCAC+TGG | - | chr5_3:27644298-27644317 | None:intergenic | 35.0% |
| ! | TGCTGACTAGAAATTCATAC+CGG | + | chr5_3:27644304-27644323 | Msa0806900:three_prime_UTR | 35.0% |
| ! | TTCTCATTGATGATCTCTTC+CGG | - | chr5_3:27644326-27644345 | None:intergenic | 35.0% |
| CATGGATATTCCAATAGACT+TGG | - | chr5_3:27644391-27644410 | None:intergenic | 35.0% | |
| CTATTGGAATATCCATGTCT+AGG | + | chr5_3:27644394-27644413 | Msa0806900:three_prime_UTR | 35.0% | |
| ! | ATTTTGAACAGTCCTAGACA+TGG | - | chr5_3:27644409-27644428 | None:intergenic | 35.0% |
| ATTTGGTCCTCGTTGTTAAA+GGG | - | chr5_3:27644488-27644507 | None:intergenic | 35.0% | |
| AATTTGGTCCTCGTTGTTAA+AGG | - | chr5_3:27644489-27644508 | None:intergenic | 35.0% | |
| ATTGTATCTTCAGACTTCAC+AGG | + | chr5_3:27644797-27644816 | Msa0806900:three_prime_UTR | 35.0% | |
| !! | TACAATGGCTCTGATTAGTG+GGG | - | chr5_3:27641889-27641908 | None:intergenic | 40.0% |
| !! | GTACAATGGCTCTGATTAGT+GGG | - | chr5_3:27641890-27641909 | None:intergenic | 40.0% |
| !! | AGTACAATGGCTCTGATTAG+TGG | - | chr5_3:27641891-27641910 | None:intergenic | 40.0% |
| AGCTCTCCCTAGTTTATATG+TGG | + | chr5_3:27642238-27642257 | Msa0806900:intron | 40.0% | |
| AGGAGAGTAACAGAAGACTA+TGG | - | chr5_3:27642288-27642307 | None:intergenic | 40.0% | |
| AGGTGTATGAGAGAAGAACT+AGG | - | chr5_3:27642308-27642327 | None:intergenic | 40.0% | |
| CAACATTCCGATGAATAGCA+AGG | - | chr5_3:27642419-27642438 | None:intergenic | 40.0% | |
| !! | CTTGCTATTCATCGGAATGT+TGG | + | chr5_3:27642417-27642436 | Msa0806900:CDS | 40.0% |
| GCTGAATTTGCATACAACCT+GGG | + | chr5_3:27642630-27642649 | Msa0806900:intron | 40.0% | |
| GACAATTTACATTCCTGGCA+TGG | + | chr5_3:27642691-27642710 | Msa0806900:intron | 40.0% | |
| TACATTCCTGGCATGGATAA+AGG | + | chr5_3:27642698-27642717 | Msa0806900:intron | 40.0% | |
| AGATTGTCTAGTACCAGAAG+AGG | - | chr5_3:27642745-27642764 | None:intergenic | 40.0% | |
| TTCGATGGCCATTATTTCAG+TGG | - | chr5_3:27642934-27642953 | None:intergenic | 40.0% | |
| CAAAAACAGAACAACGTTGC+TGG | - | chr5_3:27643121-27643140 | None:intergenic | 40.0% | |
| AAAGCTTAGCAACCGAATAC+AGG | + | chr5_3:27643190-27643209 | Msa0806900:CDS | 40.0% | |
| CCAAAGCCAGTAAACAAGAA+AGG | - | chr5_3:27643285-27643304 | None:intergenic | 40.0% | |
| !! | CCTTTCTTGTTTACTGGCTT+TGG | + | chr5_3:27643282-27643301 | Msa0806900:intron | 40.0% |
| GCGCAATTAGTTCACAAACA+TGG | + | chr5_3:27643310-27643329 | Msa0806900:intron | 40.0% | |
| TTCTGATTTAGCAGGATTGC+TGG | - | chr5_3:27643394-27643413 | None:intergenic | 40.0% | |
| GTGTGCTTGATATTTACCTG+TGG | + | chr5_3:27643427-27643446 | Msa0806900:intron | 40.0% | |
| AAACAACCAGACTCTTGCTT+CGG | - | chr5_3:27643740-27643759 | None:intergenic | 40.0% | |
| GATTCAAATTTGGCACGTGT+AGG | + | chr5_3:27643778-27643797 | Msa0806900:intron | 40.0% | |
| !! | ATCATTACAGAGGTATTGGG+CGG | + | chr5_3:27643882-27643901 | Msa0806900:CDS | 40.0% |
| !! | TGCAACGAAAGGTATTGTTC+AGG | + | chr5_3:27644185-27644204 | Msa0806900:intron | 40.0% |
| !! | GCAACGAAAGGTATTGTTCA+GGG | + | chr5_3:27644186-27644205 | Msa0806900:intron | 40.0% |
| GGAAGAGATCATCAATGAGA+AGG | + | chr5_3:27644325-27644344 | Msa0806900:three_prime_UTR | 40.0% | |
| ! | CGGTTGATTTCAGTTTGGTT+CGG | - | chr5_3:27644442-27644461 | None:intergenic | 40.0% |
| ! | AGGTTCGGTTGATTTCAGTT+TGG | - | chr5_3:27644447-27644466 | None:intergenic | 40.0% |
| TCACAAACCCTTTAACAACG+AGG | + | chr5_3:27644478-27644497 | Msa0806900:three_prime_UTR | 40.0% | |
| ATATTTCCCGGCAGCAAATT+TGG | - | chr5_3:27644505-27644524 | None:intergenic | 40.0% | |
| ATGGTCCTGCAAATATTTCC+CGG | - | chr5_3:27644517-27644536 | None:intergenic | 40.0% | |
| TTGGTTGTGATATCAGTGCG+TGG | + | chr5_3:27642436-27642455 | Msa0806900:CDS | 45.0% | |
| GGCTGAATTTGCATACAACC+TGG | + | chr5_3:27642629-27642648 | Msa0806900:intron | 45.0% | |
| GTTCTGCCATTCTGTCAAAG+TGG | - | chr5_3:27642884-27642903 | None:intergenic | 45.0% | |
| AGGGTAGCATCTCACAATAG+AGG | - | chr5_3:27642906-27642925 | None:intergenic | 45.0% | |
| !! | GCTGGAAAGTTGATGTTCGA+TGG | - | chr5_3:27642949-27642968 | None:intergenic | 45.0% |
| ! | GCTGTTTCAAGAGTTGGAAG+TGG | + | chr5_3:27643090-27643109 | Msa0806900:CDS | 45.0% |
| GCTTGATATTTACCTGTGGC+CGG | + | chr5_3:27643431-27643450 | Msa0806900:intron | 45.0% | |
| ! | GTTCAGGGCACTAAACATGA+TGG | + | chr5_3:27644201-27644220 | Msa0806900:intron | 45.0% |
| AGTCAGCAATTCACTGGCAT+AGG | - | chr5_3:27644292-27644311 | None:intergenic | 45.0% | |
| GCACATACTGCCAAGTCTAT+TGG | + | chr5_3:27644378-27644397 | Msa0806900:three_prime_UTR | 45.0% | |
| GGGTCTAAGTTGTGTTGTGT+TGG | + | chr5_3:27644705-27644724 | Msa0806900:three_prime_UTR | 45.0% | |
| GTTCAGTTGATCCCGTGACA+AGG | + | chr5_3:27641420-27641439 | Msa0806900:CDS | 50.0% | |
| !! | AATGGCTCTGATTAGTGGGG+AGG | - | chr5_3:27641886-27641905 | None:intergenic | 50.0% |
| TGGATGGCACTTCGAGAGAT+TGG | - | chr5_3:27643242-27643261 | None:intergenic | 50.0% | |
| CATATATTGTCTCCGGCCAC+AGG | - | chr5_3:27643446-27643465 | None:intergenic | 50.0% | |
| AGCAAACCGAAGCAAGAGTC+TGG | + | chr5_3:27643731-27643750 | Msa0806900:intron | 50.0% | |
| !! | ACGAGGACCAAATTTGCTGC+CGG | + | chr5_3:27644495-27644514 | Msa0806900:three_prime_UTR | 50.0% |
| TGCTGCCGGGAAATATTTGC+AGG | + | chr5_3:27644509-27644528 | Msa0806900:three_prime_UTR | 50.0% | |
| !! | CGAGGACCAAATTTGCTGCC+GGG | + | chr5_3:27644496-27644515 | Msa0806900:three_prime_UTR | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 27641267 | 27644891 | 27641267 | ID=Msa0806900;Name=Msa0806900 |
| chr5_3 | mRNA | 27641267 | 27644891 | 27641267 | ID=Msa0806900-mRNA-1;Parent=Msa0806900;Name=Msa0806900-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|1|0.85|1|0.66|0.57|7|639|156 |
| chr5_3 | exon | 27641267 | 27641293 | 27641267 | ID=Msa0806900-mRNA-1:exon:9755;Parent=Msa0806900-mRNA-1 |
| chr5_3 | exon | 27641416 | 27641502 | 27641416 | ID=Msa0806900-mRNA-1:exon:9756;Parent=Msa0806900-mRNA-1 |
| chr5_3 | exon | 27642409 | 27642480 | 27642409 | ID=Msa0806900-mRNA-1:exon:9757;Parent=Msa0806900-mRNA-1 |
| chr5_3 | exon | 27643081 | 27643211 | 27643081 | ID=Msa0806900-mRNA-1:exon:9758;Parent=Msa0806900-mRNA-1 |
| chr5_3 | exon | 27643878 | 27644029 | 27643878 | ID=Msa0806900-mRNA-1:exon:9759;Parent=Msa0806900-mRNA-1 |
| chr5_3 | exon | 27644148 | 27644195 | 27644148 | ID=Msa0806900-mRNA-1:exon:9760;Parent=Msa0806900-mRNA-1 |
| chr5_3 | exon | 27644299 | 27644891 | 27644299 | ID=Msa0806900-mRNA-1:exon:9761;Parent=Msa0806900-mRNA-1 |
| chr5_3 | CDS | 27641267 | 27641293 | 27641267 | ID=Msa0806900-mRNA-1:cds;Parent=Msa0806900-mRNA-1 |
| chr5_3 | CDS | 27641416 | 27641502 | 27641416 | ID=Msa0806900-mRNA-1:cds;Parent=Msa0806900-mRNA-1 |
| chr5_3 | CDS | 27642409 | 27642480 | 27642409 | ID=Msa0806900-mRNA-1:cds;Parent=Msa0806900-mRNA-1 |
| chr5_3 | CDS | 27643081 | 27643211 | 27643081 | ID=Msa0806900-mRNA-1:cds;Parent=Msa0806900-mRNA-1 |
| chr5_3 | CDS | 27643878 | 27644029 | 27643878 | ID=Msa0806900-mRNA-1:cds;Parent=Msa0806900-mRNA-1 |
| chr5_3 | CDS | 27644148 | 27644149 | 27644148 | ID=Msa0806900-mRNA-1:cds;Parent=Msa0806900-mRNA-1 |
| chr5_3 | three_prime_UTR | 27644150 | 27644195 | 27644150 | ID=Msa0806900-mRNA-1:three_prime_utr;Parent=Msa0806900-mRNA-1 |
| chr5_3 | three_prime_UTR | 27644299 | 27644891 | 27644299 | ID=Msa0806900-mRNA-1:three_prime_utr;Parent=Msa0806900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
