AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0807880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0807880 MtrunA17_Chr5g0422621 96.961 362 10 1 1 362 1 361 0.0 725
Msa0807880 MtrunA17_Chr1g0198601 59.078 347 115 10 10 332 1 344 2.76e-126 367
Msa0807880 MtrunA17_Chr4g0062921 38.012 342 148 14 12 310 30 350 1.23e-51 177
Msa0807880 MtrunA17_Chr4g0045361 34.783 345 144 13 16 296 41 368 6.95e-43 154
Msa0807880 MtrunA17_Chr5g0402631 37.849 251 109 7 19 260 63 275 6.19e-37 136
Msa0807880 MtrunA17_Chr5g0400241 49.333 75 34 3 193 266 304 375 7.41e-14 72.8
Msa0807880 MtrunA17_Chr4g0054981 44.211 95 41 3 173 256 273 366 1.16e-13 72.0
Msa0807880 MtrunA17_Chr7g0261911 45.783 83 45 0 175 257 238 320 1.96e-13 71.2
Msa0807880 MtrunA17_Chr3g0137101 33.600 125 77 3 188 307 186 309 2.73e-13 71.2
Msa0807880 MtrunA17_Chr1g0190301 58.929 56 23 0 197 252 173 228 3.49e-13 70.1
Msa0807880 MtrunA17_Chr1g0161431 45.333 75 40 1 193 267 194 267 3.51e-13 70.9
Msa0807880 MtrunA17_Chr2g0291021 58.182 55 23 0 199 253 49 103 4.11e-13 69.7
Msa0807880 MtrunA17_Chr4g0067981 41.053 95 43 3 198 290 214 297 4.52e-13 70.5
Msa0807880 MtrunA17_Chr7g0255711 44.156 77 42 1 181 257 73 148 7.67e-13 68.6
Msa0807880 MtrunA17_Chr7g0254981 55.172 58 26 0 196 253 47 104 8.97e-13 67.8
Msa0807880 MtrunA17_Chr7g0274471 58.929 56 23 0 197 252 216 271 1.17e-12 68.9
Msa0807880 MtrunA17_Chr2g0304841 36.207 116 66 4 197 310 211 320 1.27e-12 68.9
Msa0807880 MtrunA17_Chr1g0175081 40.000 75 44 1 201 274 24 98 1.57e-12 63.2
Msa0807880 MtrunA17_Chr2g0288601 41.111 90 41 2 164 253 48 125 2.19e-12 63.9
Msa0807880 MtrunA17_Chr2g0321461 41.379 87 46 1 172 253 13 99 2.56e-12 67.4
Msa0807880 MtrunA17_Chr2g0294911 34.746 118 71 3 198 310 210 326 2.66e-12 68.2
Msa0807880 MtrunA17_Chr8g0356501 58.182 55 23 0 199 253 37 91 3.59e-12 67.0
Msa0807880 MtrunA17_Chr1g0149841 50.820 61 29 1 197 257 189 248 5.54e-12 67.0
Msa0807880 MtrunA17_Chr5g0417521 54.545 55 25 0 199 253 15 69 6.03e-12 66.2
Msa0807880 MtrunA17_Chr4g0031961 42.105 76 43 1 198 273 130 204 6.04e-12 65.9
Msa0807880 MtrunA17_Chr4g0009901 47.561 82 34 3 185 258 146 226 6.11e-12 65.5
Msa0807880 MtrunA17_Chr1g0149831 48.387 62 28 1 196 257 125 182 7.43e-12 64.7
Msa0807880 MtrunA17_Chr2g0310011 58.182 55 23 0 199 253 35 89 8.48e-12 65.9
Msa0807880 MtrunA17_Chr2g0290991 56.364 55 24 0 199 253 39 93 1.14e-11 65.1
Msa0807880 MtrunA17_Chr1g0175091 41.772 79 37 1 184 253 234 312 1.86e-11 65.1
Msa0807880 MtrunA17_Chr2g0324891 34.951 103 59 2 154 256 123 217 1.88e-11 65.1
Msa0807880 MtrunA17_Chr4g0074411 49.180 61 30 1 197 257 199 258 1.98e-11 65.5
Msa0807880 MtrunA17_Chr7g0243081 55.102 49 22 0 204 252 76 124 4.19e-11 63.5
Msa0807880 MtrunA17_Chr4g0042451 52.727 55 26 0 199 253 17 71 4.39e-11 63.5
Msa0807880 MtrunA17_Chr1g0210911 55.102 49 22 0 204 252 27 75 4.78e-11 63.2
Msa0807880 MtrunA17_Chr4g0040481 45.161 62 33 1 195 256 154 214 5.80e-11 63.5
Msa0807880 MtrunA17_Chr1g0197171 54.545 55 25 0 199 253 44 98 6.40e-11 62.8
Msa0807880 MtrunA17_Chr6g0461641 45.205 73 39 1 199 271 42 113 7.19e-11 63.2
Msa0807880 MtrunA17_Chr6g0479431 50.794 63 28 1 190 252 196 255 8.78e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0807880 AT1G25550.1 47.337 338 138 11 1 320 1 316 1.57e-82 255
Msa0807880 AT1G68670.1 46.686 347 127 13 1 313 2 324 7.61e-77 241
Msa0807880 AT1G25550.2 52.273 264 106 8 1 249 1 259 5.25e-72 226
Msa0807880 AT3G25790.1 43.089 369 143 14 19 358 20 350 2.12e-63 206
Msa0807880 AT1G13300.1 44.444 288 99 9 20 285 20 268 2.07e-61 201
Msa0807880 AT3G25790.2 44.355 248 100 6 19 249 20 246 1.59e-47 162
Msa0807880 AT2G03500.1 34.627 335 154 11 1 294 18 328 1.23e-44 159
Msa0807880 AT4G37180.1 34.572 269 121 7 11 260 39 271 1.03e-32 125
Msa0807880 AT4G37180.2 33.829 269 130 7 11 260 39 278 1.04e-31 123
Msa0807880 AT4G37180.3 34.351 262 109 8 11 249 39 260 4.81e-28 111
Msa0807880 AT1G49560.1 32.246 276 135 10 19 279 30 268 1.32e-25 105
Msa0807880 AT1G49560.2 32.245 245 120 8 19 249 30 242 3.67e-21 92.0
Msa0807880 AT2G25180.1 37.600 125 63 4 197 307 193 316 1.05e-13 72.8
Msa0807880 AT5G58080.1 47.222 72 34 2 189 257 181 251 1.50e-13 72.4
Msa0807880 AT5G18240.2 42.857 91 46 2 168 253 10 99 2.49e-13 71.2
Msa0807880 AT5G18240.3 42.857 91 46 2 168 253 10 99 2.49e-13 71.2
Msa0807880 AT5G18240.5 42.857 91 46 2 168 253 10 99 3.06e-13 70.9
Msa0807880 AT5G18240.1 42.857 91 46 2 168 253 10 99 3.14e-13 70.9
Msa0807880 AT5G18240.4 42.857 91 46 2 168 253 10 99 3.14e-13 70.9
Msa0807880 AT5G05090.1 44.872 78 42 1 180 257 62 138 3.40e-13 69.3
Msa0807880 AT2G01060.1 58.182 55 23 0 199 253 15 69 3.57e-13 69.7
Msa0807880 AT3G10760.1 46.667 75 36 2 186 257 89 162 6.87e-13 69.3
Msa0807880 AT2G06020.1 44.737 76 34 1 186 253 65 140 1.14e-12 68.2
Msa0807880 AT3G16857.3 47.945 73 35 2 187 257 153 224 2.25e-12 68.6
Msa0807880 AT3G16857.2 47.945 73 35 2 187 257 223 294 2.60e-12 68.6
Msa0807880 AT2G01760.1 32.515 163 95 5 198 360 199 346 2.89e-12 67.8
Msa0807880 AT2G01760.2 32.515 163 95 5 198 360 227 374 3.00e-12 67.8
Msa0807880 AT2G40970.1 51.667 60 28 1 198 257 104 162 3.03e-12 66.2
Msa0807880 AT3G16857.1 47.945 73 35 2 187 257 223 294 3.32e-12 68.2
Msa0807880 AT2G01760.3 32.515 163 95 5 198 360 134 281 3.39e-12 67.0
Msa0807880 AT2G20400.2 59.259 54 22 0 199 252 231 284 4.04e-12 67.4
Msa0807880 AT3G04030.1 43.678 87 43 2 172 253 14 99 4.19e-12 67.4
Msa0807880 AT2G20400.1 59.259 54 22 0 199 252 231 284 4.25e-12 67.4
Msa0807880 AT3G04030.3 43.678 87 43 2 172 253 14 99 4.82e-12 67.0
Msa0807880 AT4G13640.2 58.182 55 23 0 199 253 37 91 5.58e-12 66.2
Msa0807880 AT4G13640.1 58.182 55 23 0 199 253 37 91 5.75e-12 66.2
Msa0807880 AT3G24120.1 58.182 55 23 0 199 253 41 95 7.72e-12 65.9
Msa0807880 AT3G24120.2 58.182 55 23 0 199 253 41 95 7.77e-12 65.9
Msa0807880 AT5G59570.2 47.619 63 32 1 195 257 137 198 8.14e-12 65.9
Msa0807880 AT5G59570.1 47.619 63 32 1 195 257 137 198 8.14e-12 65.9
Msa0807880 AT4G28610.1 47.761 67 35 0 186 252 212 278 8.26e-12 66.6
Msa0807880 AT1G79430.2 58.182 55 23 0 199 253 34 88 1.40e-11 65.5
Msa0807880 AT3G46640.2 42.105 76 43 1 198 273 143 217 1.42e-11 65.1
Msa0807880 AT3G46640.1 42.105 76 43 1 198 273 143 217 1.42e-11 65.1
Msa0807880 AT3G46640.3 42.105 76 43 1 198 273 143 217 1.43e-11 65.1
Msa0807880 AT3G12730.1 56.364 55 24 0 199 253 23 77 1.85e-11 63.9
Msa0807880 AT4G04605.1 53.846 52 24 0 201 252 16 67 2.12e-11 63.5
Msa0807880 AT3G04450.3 55.556 54 24 0 199 252 238 291 2.32e-11 64.7
Msa0807880 AT5G29000.4 45.833 72 39 0 181 252 213 284 2.62e-11 64.3
Msa0807880 AT4G31920.1 48.571 70 34 2 189 257 172 240 2.63e-11 65.5
Msa0807880 AT3G04450.1 55.556 54 24 0 199 252 238 291 4.25e-11 64.3
Msa0807880 AT4G18020.8 41.573 89 47 3 182 268 277 362 4.30e-11 64.7
Msa0807880 AT4G18020.11 41.573 89 47 3 182 268 277 362 4.30e-11 64.7
Msa0807880 AT4G18020.4 41.573 89 47 3 182 268 277 362 4.30e-11 64.7
Msa0807880 AT4G18020.5 41.573 89 47 3 182 268 277 362 4.30e-11 64.7
Msa0807880 AT4G18020.10 41.573 89 47 3 182 268 277 362 4.30e-11 64.7
Msa0807880 AT4G18020.7 41.573 89 47 3 182 268 277 362 4.30e-11 64.7
Msa0807880 AT3G04450.4 55.556 54 24 0 199 252 198 251 4.35e-11 64.3
Msa0807880 AT3G04450.2 55.556 54 24 0 199 252 198 251 4.35e-11 64.3
Msa0807880 AT4G18020.3 41.573 89 47 3 182 268 277 362 4.57e-11 64.7
Msa0807880 AT4G18020.2 41.573 89 47 3 182 268 277 362 4.57e-11 64.7
Msa0807880 AT4G18020.1 41.573 89 47 3 182 268 277 362 4.57e-11 64.7
Msa0807880 AT4G18020.6 41.573 89 47 3 182 268 277 362 4.57e-11 64.7
Msa0807880 AT4G18020.9 41.573 89 47 3 182 268 277 362 4.57e-11 64.7
Msa0807880 AT5G06800.3 50.909 55 27 0 199 253 192 246 4.65e-11 63.2
Msa0807880 AT3G13040.3 44.872 78 42 1 176 253 219 295 7.53e-11 63.5
Msa0807880 AT3G13040.1 44.872 78 42 1 176 253 219 295 7.53e-11 63.5
Msa0807880 AT3G13040.2 44.872 78 42 1 176 253 219 295 7.53e-11 63.5
Msa0807880 AT5G29000.2 45.833 72 39 0 181 252 213 284 8.67e-11 63.5
Msa0807880 AT5G29000.1 55.556 54 24 0 199 252 188 241 9.74e-11 63.2
Msa0807880 AT5G29000.3 55.556 54 24 0 199 252 188 241 9.74e-11 63.2

Find 95 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTGAACAGAATCAAATTT+TGG 0.168091 5_3:+31168880 None:intergenic
GGATCCACCAATGAAGAATA+TGG 0.224409 5_3:+31168856 None:intergenic
TTAGAATTGTTGTGAATTAT+TGG 0.251586 5_3:+31167062 None:intergenic
TTCTCCTGACACTGTTGTTT+TGG 0.263091 5_3:+31166968 None:intergenic
TAAAATGCACTCGCATAAAA+TGG 0.284993 5_3:-31168708 Msa0807880:CDS
AACTCAAATTTCTTAAACTT+TGG 0.298267 5_3:+31166867 None:intergenic
AAACCAGGCAAGAATATTAA+AGG 0.309301 5_3:-31168978 None:intergenic
CAGCAGCGATTTCCTCTTTG+TGG 0.314629 5_3:+31167806 None:intergenic
TTTCAGCATCTTGAAGTTGT+AGG 0.327142 5_3:+31166768 None:intergenic
ATTAGTTCCCGGATCTGTTT+CGG 0.330999 5_3:+31167488 None:intergenic
TTGTTGCCGCTTTCAACAAC+TGG 0.346746 5_3:+31167709 None:intergenic
TAGAATTGTTGTGAATTATT+GGG 0.348297 5_3:+31167063 None:intergenic
GAGGGTAAGGATGAATATAT+AGG 0.358023 5_3:+31168799 None:intergenic
TGAAGTCAAAAGTCATTTGC+AGG 0.374794 5_3:-31167441 Msa0807880:intron
ACAGCTCCTATGTTCTTAGT+AGG 0.381283 5_3:-31167032 Msa0807880:CDS
TGGCTTATAAACATTGAGTT+CGG 0.387647 5_3:+31168925 None:intergenic
ACGTGTAAGCAACAGTTGTT+TGG 0.397960 5_3:-31168448 Msa0807880:CDS
GGCTTATAAACATTGAGTTC+GGG 0.399400 5_3:+31168926 None:intergenic
AGAGAAAGAGGAAGGTCTCT+AGG 0.412125 5_3:+31168629 None:intergenic
TCAGATCCCATATTCTTCAT+TGG 0.415956 5_3:-31168863 Msa0807880:five_prime_UTR
GGGGAAACAGTTTGAGGAAG+AGG 0.418107 5_3:+31168780 None:intergenic
GCAGCGTCGGTGCTGGTCAC+AGG 0.421709 5_3:-31167662 Msa0807880:CDS
TATGTCCAACCACAAGAATA+TGG 0.427221 5_3:-31167002 Msa0807880:CDS
TATACCTCTTTAGCAGATGA+AGG 0.432154 5_3:+31168226 None:intergenic
TAAACTTTCAAGAGAGAGAA+TGG 0.433021 5_3:+31168905 None:intergenic
CTGCCACGCCGAAACAGATC+CGG 0.438655 5_3:-31167496 Msa0807880:CDS
TGGAACACAATCGGAGTGTT+CGG 0.442544 5_3:-31168428 Msa0807880:CDS
ACCACAGTTACTACTCCAAC+AGG 0.442991 5_3:-31166942 Msa0807880:CDS
CAACCCTTCATCTGCTAAAG+AGG 0.450187 5_3:-31168230 Msa0807880:intron
CATCGACTTTCATTAGTTCC+CGG 0.451625 5_3:+31167477 None:intergenic
ACAGTTTGAGGAAGAGGGTA+AGG 0.452074 5_3:+31168786 None:intergenic
AGTTTATTCCTATCAAGAAA+AGG 0.453926 5_3:-31168369 Msa0807880:CDS
AGCAGGTACTTGAGGCGAAC+TGG 0.464004 5_3:+31167747 None:intergenic
CATGCCCTTCAACAACTTGG+CGG 0.464333 5_3:-31167619 Msa0807880:CDS
TCTTTAGCAGATGAAGGGTT+GGG 0.465236 5_3:+31168232 None:intergenic
GATCCCATATTCTTCATTGG+TGG 0.473401 5_3:-31168860 Msa0807880:five_prime_UTR
GTTTATTCCTATCAAGAAAA+GGG 0.474072 5_3:-31168368 Msa0807880:CDS
CACATAAGATGAAATCTGAT+TGG 0.476812 5_3:-31168279 Msa0807880:CDS
TTGCATGCCCTTCAACAACT+TGG 0.479053 5_3:-31167622 Msa0807880:CDS
AGAGGAAGCAGCGTCGGTGC+TGG 0.486844 5_3:-31167669 Msa0807880:CDS
CTCTTTAGCAGATGAAGGGT+TGG 0.487382 5_3:+31168231 None:intergenic
GCCACCAAAACAACAGTGTC+AGG 0.487737 5_3:-31166972 Msa0807880:CDS
ATAACTGTTGTTGTAGATGA+AGG 0.491980 5_3:+31166894 None:intergenic
TTGAACCGCCAAGTTGTTGA+AGG 0.494195 5_3:+31167614 None:intergenic
GAGAAAGAGGAAGGTCTCTA+GGG 0.495572 5_3:+31168630 None:intergenic
GCGATTTCCTCTTTGTGGAA+TGG 0.495901 5_3:+31167811 None:intergenic
ACAGTTGTTTGGAACACAAT+CGG 0.495980 5_3:-31168437 Msa0807880:CDS
AGGGTAAGGATGAATATATA+GGG 0.496998 5_3:+31168800 None:intergenic
GTAACAAGCTCAAGAGAAAG+AGG 0.505480 5_3:+31168617 None:intergenic
GGGAAACAGTTTGAGGAAGA+GGG 0.507538 5_3:+31168781 None:intergenic
TGTTGAGGGGAAACAGTTTG+AGG 0.513525 5_3:+31168774 None:intergenic
AGAAGAAAAGAAGAAAATCC+AGG 0.515271 5_3:-31168657 Msa0807880:CDS
CTGCACCATATTCTTGTGGT+TGG 0.520262 5_3:+31166997 None:intergenic
GATCCACCAATGAAGAATAT+GGG 0.523876 5_3:+31168857 None:intergenic
GAAGGTCTCTAGGGAAAACC+TGG 0.528167 5_3:+31168639 None:intergenic
TGCCACGCCGAAACAGATCC+GGG 0.529744 5_3:-31167495 Msa0807880:CDS
GGCTAAGATCTGTTCAGTTG+TGG 0.535273 5_3:-31168258 Msa0807880:CDS
GTTGTAGAAGTGAAGAGAAA+TGG 0.535669 5_3:-31167847 Msa0807880:CDS
TTATGTGAATGTGTTGTTGA+GGG 0.540485 5_3:+31168760 None:intergenic
CTGTTGCTTACACGTTTCGA+TGG 0.543399 5_3:+31168456 None:intergenic
GGCAACAAAAGAGACGATAA+AGG 0.545011 5_3:-31167694 Msa0807880:CDS
ATTTCAACCATTCCACAAAG+AGG 0.547227 5_3:-31167818 Msa0807880:CDS
CAGCTCCTATGTTCTTAGTA+GGG 0.547398 5_3:-31167031 Msa0807880:CDS
GAACAGACATCAACTGATGA+AGG 0.553875 5_3:-31168406 Msa0807880:CDS
ATACCTCTTTAGCAGATGAA+GGG 0.556739 5_3:+31168227 None:intergenic
TGAACCGCCAAGTTGTTGAA+GGG 0.566682 5_3:+31167615 None:intergenic
TTTATGTGAATGTGTTGTTG+AGG 0.568338 5_3:+31168759 None:intergenic
GCTACTGCACCATATTCTTG+TGG 0.569246 5_3:+31166993 None:intergenic
TGAGTGGAACATGATGAGGC+AGG 0.570388 5_3:+31166795 None:intergenic
TCGTGACTATATCCTAGCAT+TGG 0.570432 5_3:-31168681 Msa0807880:CDS
GAGTGGAACATGATGAGGCA+GGG 0.580949 5_3:+31166796 None:intergenic
ACAGGTGCATAAATTCCTGT+TGG 0.585331 5_3:+31166927 None:intergenic
CAAGCTCAAGAGAAAGAGGA+AGG 0.593272 5_3:+31168621 None:intergenic
ATGTTCCCTACTAAGAACAT+AGG 0.593541 5_3:+31167026 None:intergenic
AGTGGAACATGATGAGGCAG+GGG 0.594079 5_3:+31166797 None:intergenic
AACAGGAATTTATGCACCTG+TGG 0.600669 5_3:-31166925 Msa0807880:CDS
GAACTTGTAGCAGGTACTTG+AGG 0.602704 5_3:+31167739 None:intergenic
TGTTTGTTCAGGAAGTGCCT+AGG 0.604873 5_3:-31167879 Msa0807880:intron
ACTGAACCAGTTGTTGAAAG+CGG 0.609363 5_3:-31167715 Msa0807880:CDS
AATTTCGTCTGCACACGAGA+AGG 0.610345 5_3:-31167088 Msa0807880:CDS
TATGTGAATGTGTTGTTGAG+GGG 0.612609 5_3:+31168761 None:intergenic
TCTCTTGAGCTTGTTACACA+AGG 0.614804 5_3:-31168611 Msa0807880:intron
GTAGAAGTGAAGAGAAATGG+TGG 0.614913 5_3:-31167844 Msa0807880:CDS
AAGGTCAGAGGAAGCAGCGT+CGG 0.617450 5_3:-31167675 Msa0807880:CDS
GGTTCAGTAGAACTTGTAGC+AGG 0.619585 5_3:+31167730 None:intergenic
AAAGAGACGATAAAGGTCAG+AGG 0.623540 5_3:-31167687 Msa0807880:CDS
CGGGAACTAATGAAAGTCGA+TGG 0.628624 5_3:-31167476 Msa0807880:CDS
GGTACTTGAGGCGAACTGGT+TGG 0.629043 5_3:+31167751 None:intergenic
GAATATATAGGGAATGAATG+AGG 0.643737 5_3:+31168811 None:intergenic
TGAAGTTGTAGGTGTATGAG+TGG 0.650979 5_3:+31166779 None:intergenic
GATGAAGGATGTGTAGCCAC+AGG 0.668784 5_3:+31166909 None:intergenic
CAATTGCGATGAAAATGATG+AGG 0.674430 5_3:-31168335 Msa0807880:CDS
TCCTGTTGGAGTAGTAACTG+TGG 0.676951 5_3:+31166941 None:intergenic
TTCCCGGATCTGTTTCGGCG+TGG 0.690024 5_3:+31167493 None:intergenic
TGTATGAGTGGAACATGATG+AGG 0.702899 5_3:+31166791 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAACATAAGGAAAAAAAAA+AGG + chr5_3:31167247-31167266 None:intergenic 15.0%
!! TTAATCATAGAAAATTACAT+TGG - chr5_3:31167573-31167592 Msa0807880:intron 15.0%
!! TCATTTATTAAAATCAACTT+TGG + chr5_3:31167654-31167673 None:intergenic 15.0%
!!! ATTTTTTCTTTGTTTCATAA+TGG - chr5_3:31167814-31167833 Msa0807880:CDS 15.0%
!!! GTCTAACTTTTTTTAATTTT+CGG - chr5_3:31168618-31168637 Msa0807880:CDS 15.0%
!! ATAACATAAGGAAAAAAAAA+AGG + chr5_3:31167247-31167266 None:intergenic 15.0%
!! TTAATCATAGAAAATTACAT+TGG - chr5_3:31167573-31167592 Msa0807880:intron 15.0%
!! TCATTTATTAAAATCAACTT+TGG + chr5_3:31167654-31167673 None:intergenic 15.0%
!!! ATTTTTTCTTTGTTTCATAA+TGG - chr5_3:31167814-31167833 Msa0807880:CDS 15.0%
!!! GTCTAACTTTTTTTAATTTT+CGG - chr5_3:31168618-31168637 Msa0807880:CDS 15.0%
!!! CACATTCACATAAATTTTAA+TGG - chr5_3:31166990-31167009 Msa0807880:CDS 20.0%
!!! AGTGTATATTTTTTTTCTTC+TGG + chr5_3:31167168-31167187 None:intergenic 20.0%
!! TATTCACAAAACATAACATA+AGG + chr5_3:31167259-31167278 None:intergenic 20.0%
!! TCTTCTTGATTGTTAAATTA+TGG - chr5_3:31168596-31168615 Msa0807880:intron 20.0%
!! TAGAATTGTTGTGAATTATT+GGG + chr5_3:31168680-31168699 None:intergenic 20.0%
!! TTAGAATTGTTGTGAATTAT+TGG + chr5_3:31168681-31168700 None:intergenic 20.0%
!! AACTCAAATTTCTTAAACTT+TGG + chr5_3:31168876-31168895 None:intergenic 20.0%
!!! CACATTCACATAAATTTTAA+TGG - chr5_3:31166990-31167009 Msa0807880:CDS 20.0%
!!! AGTGTATATTTTTTTTCTTC+TGG + chr5_3:31167168-31167187 None:intergenic 20.0%
!! TATTCACAAAACATAACATA+AGG + chr5_3:31167259-31167278 None:intergenic 20.0%
!! TCTTCTTGATTGTTAAATTA+TGG - chr5_3:31168596-31168615 Msa0807880:intron 20.0%
!! TAGAATTGTTGTGAATTATT+GGG + chr5_3:31168680-31168699 None:intergenic 20.0%
!! TTAGAATTGTTGTGAATTAT+TGG + chr5_3:31168681-31168700 None:intergenic 20.0%
!! AACTCAAATTTCTTAAACTT+TGG + chr5_3:31168876-31168895 None:intergenic 20.0%
!! ATCTGAACAGAATCAAATTT+TGG + chr5_3:31166863-31166882 None:intergenic 25.0%
! TTTGTCCAAATACAGAAAAA+CGG + chr5_3:31166908-31166927 None:intergenic 25.0%
! CAATGAAAGAAACATTAACA+TGG + chr5_3:31167201-31167220 None:intergenic 25.0%
! CATGTTAATGTTTCTTTCAT+TGG - chr5_3:31167199-31167218 Msa0807880:intron 25.0%
! AGTTTATTCCTATCAAGAAA+AGG - chr5_3:31167371-31167390 Msa0807880:intron 25.0%
! GTTTATTCCTATCAAGAAAA+GGG - chr5_3:31167372-31167391 Msa0807880:intron 25.0%
!! AGAATTTGAAATGTTTGTTC+AGG - chr5_3:31167850-31167869 Msa0807880:CDS 25.0%
! ACACAATTCACATTTAGATT+CGG + chr5_3:31168210-31168229 None:intergenic 25.0%
! AAAAAATCAAAACGATGAAG+TGG + chr5_3:31168333-31168352 None:intergenic 25.0%
! GACAAGGAAAATTATACAAA+TGG + chr5_3:31168359-31168378 None:intergenic 25.0%
! GATATACTTTAAGCTTGATT+TGG + chr5_3:31168471-31168490 None:intergenic 25.0%
!!! CTTTTTTTAATTTTCGGACA+TGG - chr5_3:31168624-31168643 Msa0807880:CDS 25.0%
!! ATCTGAACAGAATCAAATTT+TGG + chr5_3:31166863-31166882 None:intergenic 25.0%
! TTTGTCCAAATACAGAAAAA+CGG + chr5_3:31166908-31166927 None:intergenic 25.0%
! CAATGAAAGAAACATTAACA+TGG + chr5_3:31167201-31167220 None:intergenic 25.0%
! CATGTTAATGTTTCTTTCAT+TGG - chr5_3:31167199-31167218 Msa0807880:intron 25.0%
! AGTTTATTCCTATCAAGAAA+AGG - chr5_3:31167371-31167390 Msa0807880:intron 25.0%
! GTTTATTCCTATCAAGAAAA+GGG - chr5_3:31167372-31167391 Msa0807880:intron 25.0%
!! AGAATTTGAAATGTTTGTTC+AGG - chr5_3:31167850-31167869 Msa0807880:CDS 25.0%
! ACACAATTCACATTTAGATT+CGG + chr5_3:31168210-31168229 None:intergenic 25.0%
! AAAAAATCAAAACGATGAAG+TGG + chr5_3:31168333-31168352 None:intergenic 25.0%
! GACAAGGAAAATTATACAAA+TGG + chr5_3:31168359-31168378 None:intergenic 25.0%
! GATATACTTTAAGCTTGATT+TGG + chr5_3:31168471-31168490 None:intergenic 25.0%
!!! CTTTTTTTAATTTTCGGACA+TGG - chr5_3:31168624-31168643 Msa0807880:CDS 25.0%
TGGCTTATAAACATTGAGTT+CGG + chr5_3:31166818-31166837 None:intergenic 30.0%
TAAACTTTCAAGAGAGAGAA+TGG + chr5_3:31166838-31166857 None:intergenic 30.0%
GAATATATAGGGAATGAATG+AGG + chr5_3:31166932-31166951 None:intergenic 30.0%
AGGGTAAGGATGAATATATA+GGG + chr5_3:31166943-31166962 None:intergenic 30.0%
! TTATGTGAATGTGTTGTTGA+GGG + chr5_3:31166983-31167002 None:intergenic 30.0%
! TTTATGTGAATGTGTTGTTG+AGG + chr5_3:31166984-31167003 None:intergenic 30.0%
TAAAATGCACTCGCATAAAA+TGG - chr5_3:31167032-31167051 Msa0807880:CDS 30.0%
AGAAGAAAAGAAGAAAATCC+AGG - chr5_3:31167083-31167102 Msa0807880:CDS 30.0%
!! TGTTTCTTTCATTGGTTTCT+TGG - chr5_3:31167207-31167226 Msa0807880:intron 30.0%
GAATAAACTCCTCAAAAACA+AGG + chr5_3:31167360-31167379 None:intergenic 30.0%
! TCATCATTTTCATCGCAATT+GGG + chr5_3:31167406-31167425 None:intergenic 30.0%
CACATAAGATGAAATCTGAT+TGG - chr5_3:31167461-31167480 Msa0807880:CDS 30.0%
CGTACAAAAAAATTCGACTT+TGG + chr5_3:31167551-31167570 None:intergenic 30.0%
GAAAATTACATTGGACTGAA+AGG - chr5_3:31167582-31167601 Msa0807880:intron 30.0%
!! GAACTGTGAAACTTTTGATT+AGG - chr5_3:31167715-31167734 Msa0807880:CDS 30.0%
!! TCTACAACATTTGTTTTCCT+AGG + chr5_3:31167881-31167900 None:intergenic 30.0%
TTACTAACCACGTATAATCT+TGG + chr5_3:31168387-31168406 None:intergenic 30.0%
AGATGTCTAATCTTCATCTA+CGG + chr5_3:31168433-31168452 None:intergenic 30.0%
TAACAATCAAGAAGATCGTA+TGG + chr5_3:31168591-31168610 None:intergenic 30.0%
ATAACTGTTGTTGTAGATGA+AGG + chr5_3:31168849-31168868 None:intergenic 30.0%
TGGCTTATAAACATTGAGTT+CGG + chr5_3:31166818-31166837 None:intergenic 30.0%
TAAACTTTCAAGAGAGAGAA+TGG + chr5_3:31166838-31166857 None:intergenic 30.0%
GAATATATAGGGAATGAATG+AGG + chr5_3:31166932-31166951 None:intergenic 30.0%
AGGGTAAGGATGAATATATA+GGG + chr5_3:31166943-31166962 None:intergenic 30.0%
! TTATGTGAATGTGTTGTTGA+GGG + chr5_3:31166983-31167002 None:intergenic 30.0%
! TTTATGTGAATGTGTTGTTG+AGG + chr5_3:31166984-31167003 None:intergenic 30.0%
TAAAATGCACTCGCATAAAA+TGG - chr5_3:31167032-31167051 Msa0807880:CDS 30.0%
AGAAGAAAAGAAGAAAATCC+AGG - chr5_3:31167083-31167102 Msa0807880:CDS 30.0%
!! TGTTTCTTTCATTGGTTTCT+TGG - chr5_3:31167207-31167226 Msa0807880:intron 30.0%
GAATAAACTCCTCAAAAACA+AGG + chr5_3:31167360-31167379 None:intergenic 30.0%
! TCATCATTTTCATCGCAATT+GGG + chr5_3:31167406-31167425 None:intergenic 30.0%
CACATAAGATGAAATCTGAT+TGG - chr5_3:31167461-31167480 Msa0807880:CDS 30.0%
CGTACAAAAAAATTCGACTT+TGG + chr5_3:31167551-31167570 None:intergenic 30.0%
GAAAATTACATTGGACTGAA+AGG - chr5_3:31167582-31167601 Msa0807880:intron 30.0%
!! GAACTGTGAAACTTTTGATT+AGG - chr5_3:31167715-31167734 Msa0807880:CDS 30.0%
!! TCTACAACATTTGTTTTCCT+AGG + chr5_3:31167881-31167900 None:intergenic 30.0%
TTACTAACCACGTATAATCT+TGG + chr5_3:31168387-31168406 None:intergenic 30.0%
AGATGTCTAATCTTCATCTA+CGG + chr5_3:31168433-31168452 None:intergenic 30.0%
TAACAATCAAGAAGATCGTA+TGG + chr5_3:31168591-31168610 None:intergenic 30.0%
ATAACTGTTGTTGTAGATGA+AGG + chr5_3:31168849-31168868 None:intergenic 30.0%
GGCTTATAAACATTGAGTTC+GGG + chr5_3:31166817-31166836 None:intergenic 35.0%
TCAGATCCCATATTCTTCAT+TGG - chr5_3:31166877-31166896 Msa0807880:CDS 35.0%
GATCCACCAATGAAGAATAT+GGG + chr5_3:31166886-31166905 None:intergenic 35.0%
!! TGGATCCGTTTTTCTGTATT+TGG - chr5_3:31166900-31166919 Msa0807880:CDS 35.0%
GAGGGTAAGGATGAATATAT+AGG + chr5_3:31166944-31166963 None:intergenic 35.0%
! TATGTGAATGTGTTGTTGAG+GGG + chr5_3:31166982-31167001 None:intergenic 35.0%
! TCTTTTCTTCTTCCAATGCT+AGG + chr5_3:31167074-31167093 None:intergenic 35.0%
! ACAGTTGTTTGGAACACAAT+CGG - chr5_3:31167303-31167322 Msa0807880:intron 35.0%
! ATCATTTTCATCGCAATTGG+GGG + chr5_3:31167404-31167423 None:intergenic 35.0%
! CATCATTTTCATCGCAATTG+GGG + chr5_3:31167405-31167424 None:intergenic 35.0%
! CTCATCATTTTCATCGCAAT+TGG + chr5_3:31167407-31167426 None:intergenic 35.0%
CAATTGCGATGAAAATGATG+AGG - chr5_3:31167405-31167424 Msa0807880:intron 35.0%
ATACCTCTTTAGCAGATGAA+GGG + chr5_3:31167516-31167535 None:intergenic 35.0%
TATACCTCTTTAGCAGATGA+AGG + chr5_3:31167517-31167536 None:intergenic 35.0%
GTTGTAGAAGTGAAGAGAAA+TGG - chr5_3:31167893-31167912 Msa0807880:intron 35.0%
ATTTCAACCATTCCACAAAG+AGG - chr5_3:31167922-31167941 Msa0807880:intron 35.0%
!!! ATGACTTTTGACTTCATCGT+TGG + chr5_3:31168295-31168314 None:intergenic 35.0%
TGAAGTCAAAAGTCATTTGC+AGG - chr5_3:31168299-31168318 Msa0807880:CDS 35.0%
! TATAATCTTGGTCTGAGACA+AGG + chr5_3:31168375-31168394 None:intergenic 35.0%
AAGTATATCTCGAATACGAG+CGG - chr5_3:31168482-31168501 Msa0807880:intron 35.0%
CGGTCTAACCTTTAATCTAA+CGG - chr5_3:31168502-31168521 Msa0807880:intron 35.0%
GATCTTGACCGTTAGATTAA+AGG + chr5_3:31168513-31168532 None:intergenic 35.0%
ATGTTCCCTACTAAGAACAT+AGG + chr5_3:31168717-31168736 None:intergenic 35.0%
TATGTCCAACCACAAGAATA+TGG - chr5_3:31168738-31168757 Msa0807880:exon 35.0%
GGCTTATAAACATTGAGTTC+GGG + chr5_3:31166817-31166836 None:intergenic 35.0%
TCAGATCCCATATTCTTCAT+TGG - chr5_3:31166877-31166896 Msa0807880:CDS 35.0%
GATCCACCAATGAAGAATAT+GGG + chr5_3:31166886-31166905 None:intergenic 35.0%
!! TGGATCCGTTTTTCTGTATT+TGG - chr5_3:31166900-31166919 Msa0807880:CDS 35.0%
GAGGGTAAGGATGAATATAT+AGG + chr5_3:31166944-31166963 None:intergenic 35.0%
! TATGTGAATGTGTTGTTGAG+GGG + chr5_3:31166982-31167001 None:intergenic 35.0%
! TCTTTTCTTCTTCCAATGCT+AGG + chr5_3:31167074-31167093 None:intergenic 35.0%
! ACAGTTGTTTGGAACACAAT+CGG - chr5_3:31167303-31167322 Msa0807880:intron 35.0%
! ATCATTTTCATCGCAATTGG+GGG + chr5_3:31167404-31167423 None:intergenic 35.0%
! CATCATTTTCATCGCAATTG+GGG + chr5_3:31167405-31167424 None:intergenic 35.0%
! CTCATCATTTTCATCGCAAT+TGG + chr5_3:31167407-31167426 None:intergenic 35.0%
CAATTGCGATGAAAATGATG+AGG - chr5_3:31167405-31167424 Msa0807880:intron 35.0%
ATACCTCTTTAGCAGATGAA+GGG + chr5_3:31167516-31167535 None:intergenic 35.0%
TATACCTCTTTAGCAGATGA+AGG + chr5_3:31167517-31167536 None:intergenic 35.0%
GTTGTAGAAGTGAAGAGAAA+TGG - chr5_3:31167893-31167912 Msa0807880:intron 35.0%
ATTTCAACCATTCCACAAAG+AGG - chr5_3:31167922-31167941 Msa0807880:intron 35.0%
!!! ATGACTTTTGACTTCATCGT+TGG + chr5_3:31168295-31168314 None:intergenic 35.0%
TGAAGTCAAAAGTCATTTGC+AGG - chr5_3:31168299-31168318 Msa0807880:CDS 35.0%
! TATAATCTTGGTCTGAGACA+AGG + chr5_3:31168375-31168394 None:intergenic 35.0%
AAGTATATCTCGAATACGAG+CGG - chr5_3:31168482-31168501 Msa0807880:intron 35.0%
CGGTCTAACCTTTAATCTAA+CGG - chr5_3:31168502-31168521 Msa0807880:intron 35.0%
GATCTTGACCGTTAGATTAA+AGG + chr5_3:31168513-31168532 None:intergenic 35.0%
ATGTTCCCTACTAAGAACAT+AGG + chr5_3:31168717-31168736 None:intergenic 35.0%
TATGTCCAACCACAAGAATA+TGG - chr5_3:31168738-31168757 Msa0807880:exon 35.0%
GATCCCATATTCTTCATTGG+TGG - chr5_3:31166880-31166899 Msa0807880:CDS 40.0%
GGATCCACCAATGAAGAATA+TGG + chr5_3:31166887-31166906 None:intergenic 40.0%
TCGTGACTATATCCTAGCAT+TGG - chr5_3:31167059-31167078 Msa0807880:CDS 40.0%
GTAACAAGCTCAAGAGAAAG+AGG + chr5_3:31167126-31167145 None:intergenic 40.0%
!! TCTCTTGAGCTTGTTACACA+AGG - chr5_3:31167129-31167148 Msa0807880:intron 40.0%
ACGTGTAAGCAACAGTTGTT+TGG - chr5_3:31167292-31167311 Msa0807880:intron 40.0%
GAACAGACATCAACTGATGA+AGG - chr5_3:31167334-31167353 Msa0807880:intron 40.0%
!!! TGATGAAGGCCTTGTTTTTG+AGG - chr5_3:31167348-31167367 Msa0807880:intron 40.0%
! GACAATGCCCTTTTCTTGAT+AGG + chr5_3:31167382-31167401 None:intergenic 40.0%
TCTTTAGCAGATGAAGGGTT+GGG + chr5_3:31167511-31167530 None:intergenic 40.0%
GTATCAAGCAAGCAGACAAT+AGG + chr5_3:31167770-31167789 None:intergenic 40.0%
GTAGAAGTGAAGAGAAATGG+TGG - chr5_3:31167896-31167915 Msa0807880:intron 40.0%
ACTGAACCAGTTGTTGAAAG+CGG - chr5_3:31168025-31168044 Msa0807880:intron 40.0%
GGCAACAAAAGAGACGATAA+AGG - chr5_3:31168046-31168065 Msa0807880:intron 40.0%
AAAGAGACGATAAAGGTCAG+AGG - chr5_3:31168053-31168072 Msa0807880:intron 40.0%
ATTAGTTCCCGGATCTGTTT+CGG + chr5_3:31168255-31168274 None:intergenic 40.0%
!! CATCGACTTTCATTAGTTCC+CGG + chr5_3:31168266-31168285 None:intergenic 40.0%
!!! TTTTGACTTCATCGTTGGTG+AGG + chr5_3:31168290-31168309 None:intergenic 40.0%
TCTCAGACCAAGATTATACG+TGG - chr5_3:31168377-31168396 Msa0807880:CDS 40.0%
TTAGTAAACCCTGCAATCCA+CGG - chr5_3:31168400-31168419 Msa0807880:CDS 40.0%
! GTAAAAATCCGTGGATTGCA+GGG + chr5_3:31168411-31168430 None:intergenic 40.0%
TCATCTACGGTAAAAATCCG+TGG + chr5_3:31168420-31168439 None:intergenic 40.0%
AGTCGCAATTCTGATAGTCA+AGG + chr5_3:31168535-31168554 None:intergenic 40.0%
ACAGCTCCTATGTTCTTAGT+AGG - chr5_3:31168708-31168727 Msa0807880:CDS 40.0%
CAGCTCCTATGTTCTTAGTA+GGG - chr5_3:31168709-31168728 Msa0807880:CDS 40.0%
!! TTCTCCTGACACTGTTGTTT+TGG + chr5_3:31168775-31168794 None:intergenic 40.0%
ACAGGTGCATAAATTCCTGT+TGG + chr5_3:31168816-31168835 None:intergenic 40.0%
AACAGGAATTTATGCACCTG+TGG - chr5_3:31168815-31168834 Msa0807880:five_prime_UTR 40.0%
TGTATGAGTGGAACATGATG+AGG + chr5_3:31168952-31168971 None:intergenic 40.0%
TGAAGTTGTAGGTGTATGAG+TGG + chr5_3:31168964-31168983 None:intergenic 40.0%
GATCCCATATTCTTCATTGG+TGG - chr5_3:31166880-31166899 Msa0807880:CDS 40.0%
GGATCCACCAATGAAGAATA+TGG + chr5_3:31166887-31166906 None:intergenic 40.0%
TCGTGACTATATCCTAGCAT+TGG - chr5_3:31167059-31167078 Msa0807880:CDS 40.0%
GTAACAAGCTCAAGAGAAAG+AGG + chr5_3:31167126-31167145 None:intergenic 40.0%
!! TCTCTTGAGCTTGTTACACA+AGG - chr5_3:31167129-31167148 Msa0807880:intron 40.0%
ACGTGTAAGCAACAGTTGTT+TGG - chr5_3:31167292-31167311 Msa0807880:intron 40.0%
GAACAGACATCAACTGATGA+AGG - chr5_3:31167334-31167353 Msa0807880:intron 40.0%
!!! TGATGAAGGCCTTGTTTTTG+AGG - chr5_3:31167348-31167367 Msa0807880:intron 40.0%
! GACAATGCCCTTTTCTTGAT+AGG + chr5_3:31167382-31167401 None:intergenic 40.0%
TCTTTAGCAGATGAAGGGTT+GGG + chr5_3:31167511-31167530 None:intergenic 40.0%
GTATCAAGCAAGCAGACAAT+AGG + chr5_3:31167770-31167789 None:intergenic 40.0%
GTAGAAGTGAAGAGAAATGG+TGG - chr5_3:31167896-31167915 Msa0807880:intron 40.0%
ACTGAACCAGTTGTTGAAAG+CGG - chr5_3:31168025-31168044 Msa0807880:intron 40.0%
GGCAACAAAAGAGACGATAA+AGG - chr5_3:31168046-31168065 Msa0807880:intron 40.0%
AAAGAGACGATAAAGGTCAG+AGG - chr5_3:31168053-31168072 Msa0807880:intron 40.0%
ATTAGTTCCCGGATCTGTTT+CGG + chr5_3:31168255-31168274 None:intergenic 40.0%
!! CATCGACTTTCATTAGTTCC+CGG + chr5_3:31168266-31168285 None:intergenic 40.0%
!!! TTTTGACTTCATCGTTGGTG+AGG + chr5_3:31168290-31168309 None:intergenic 40.0%
TCTCAGACCAAGATTATACG+TGG - chr5_3:31168377-31168396 Msa0807880:CDS 40.0%
TTAGTAAACCCTGCAATCCA+CGG - chr5_3:31168400-31168419 Msa0807880:CDS 40.0%
! GTAAAAATCCGTGGATTGCA+GGG + chr5_3:31168411-31168430 None:intergenic 40.0%
TCATCTACGGTAAAAATCCG+TGG + chr5_3:31168420-31168439 None:intergenic 40.0%
AGTCGCAATTCTGATAGTCA+AGG + chr5_3:31168535-31168554 None:intergenic 40.0%
ACAGCTCCTATGTTCTTAGT+AGG - chr5_3:31168708-31168727 Msa0807880:CDS 40.0%
CAGCTCCTATGTTCTTAGTA+GGG - chr5_3:31168709-31168728 Msa0807880:CDS 40.0%
!! TTCTCCTGACACTGTTGTTT+TGG + chr5_3:31168775-31168794 None:intergenic 40.0%
ACAGGTGCATAAATTCCTGT+TGG + chr5_3:31168816-31168835 None:intergenic 40.0%
AACAGGAATTTATGCACCTG+TGG - chr5_3:31168815-31168834 Msa0807880:five_prime_UTR 40.0%
TGTATGAGTGGAACATGATG+AGG + chr5_3:31168952-31168971 None:intergenic 40.0%
TGAAGTTGTAGGTGTATGAG+TGG + chr5_3:31168964-31168983 None:intergenic 40.0%
ACAGTTTGAGGAAGAGGGTA+AGG + chr5_3:31166957-31166976 None:intergenic 45.0%
GGGAAACAGTTTGAGGAAGA+GGG + chr5_3:31166962-31166981 None:intergenic 45.0%
TGTTGAGGGGAAACAGTTTG+AGG + chr5_3:31166969-31166988 None:intergenic 45.0%
GAGAAAGAGGAAGGTCTCTA+GGG + chr5_3:31167113-31167132 None:intergenic 45.0%
AGAGAAAGAGGAAGGTCTCT+AGG + chr5_3:31167114-31167133 None:intergenic 45.0%
CAAGCTCAAGAGAAAGAGGA+AGG + chr5_3:31167122-31167141 None:intergenic 45.0%
! CTGTTGCTTACACGTTTCGA+TGG + chr5_3:31167287-31167306 None:intergenic 45.0%
! TGGAACACAATCGGAGTGTT+CGG - chr5_3:31167312-31167331 Msa0807880:intron 45.0%
GGCTAAGATCTGTTCAGTTG+TGG - chr5_3:31167482-31167501 Msa0807880:CDS 45.0%
CTCTTTAGCAGATGAAGGGT+TGG + chr5_3:31167512-31167531 None:intergenic 45.0%
CAACCCTTCATCTGCTAAAG+AGG - chr5_3:31167510-31167529 Msa0807880:intron 45.0%
TTGGTTTCGCCATCCAGAAA+CGG + chr5_3:31167635-31167654 None:intergenic 45.0%
CAAGCAGACAATAGGCTTGA+TGG + chr5_3:31167762-31167781 None:intergenic 45.0%
!! TGTTTGTTCAGGAAGTGCCT+AGG - chr5_3:31167861-31167880 Msa0807880:CDS 45.0%
GCGATTTCCTCTTTGTGGAA+TGG + chr5_3:31167932-31167951 None:intergenic 45.0%
GAACTTGTAGCAGGTACTTG+AGG + chr5_3:31168004-31168023 None:intergenic 45.0%
GGTTCAGTAGAACTTGTAGC+AGG + chr5_3:31168013-31168032 None:intergenic 45.0%
!! TTGTTGCCGCTTTCAACAAC+TGG + chr5_3:31168034-31168053 None:intergenic 45.0%
TTGCATGCCCTTCAACAACT+TGG - chr5_3:31168118-31168137 Msa0807880:intron 45.0%
TGAACCGCCAAGTTGTTGAA+GGG + chr5_3:31168128-31168147 None:intergenic 45.0%
TTGAACCGCCAAGTTGTTGA+AGG + chr5_3:31168129-31168148 None:intergenic 45.0%
CGGGAACTAATGAAAGTCGA+TGG - chr5_3:31168264-31168283 Msa0807880:CDS 45.0%
! GGTAAAAATCCGTGGATTGC+AGG + chr5_3:31168412-31168431 None:intergenic 45.0%
AATTTCGTCTGCACACGAGA+AGG - chr5_3:31168652-31168671 Msa0807880:CDS 45.0%
CTGCACCATATTCTTGTGGT+TGG + chr5_3:31168746-31168765 None:intergenic 45.0%
GCTACTGCACCATATTCTTG+TGG + chr5_3:31168750-31168769 None:intergenic 45.0%
!!! TCCTGACACTGTTGTTTTGG+TGG + chr5_3:31168772-31168791 None:intergenic 45.0%
ACCACAGTTACTACTCCAAC+AGG - chr5_3:31168798-31168817 Msa0807880:five_prime_UTR 45.0%
TCCTGTTGGAGTAGTAACTG+TGG + chr5_3:31168802-31168821 None:intergenic 45.0%
ACAGTTTGAGGAAGAGGGTA+AGG + chr5_3:31166957-31166976 None:intergenic 45.0%
GGGAAACAGTTTGAGGAAGA+GGG + chr5_3:31166962-31166981 None:intergenic 45.0%
TGTTGAGGGGAAACAGTTTG+AGG + chr5_3:31166969-31166988 None:intergenic 45.0%
GAGAAAGAGGAAGGTCTCTA+GGG + chr5_3:31167113-31167132 None:intergenic 45.0%
AGAGAAAGAGGAAGGTCTCT+AGG + chr5_3:31167114-31167133 None:intergenic 45.0%
CAAGCTCAAGAGAAAGAGGA+AGG + chr5_3:31167122-31167141 None:intergenic 45.0%
! CTGTTGCTTACACGTTTCGA+TGG + chr5_3:31167287-31167306 None:intergenic 45.0%
! TGGAACACAATCGGAGTGTT+CGG - chr5_3:31167312-31167331 Msa0807880:intron 45.0%
GGCTAAGATCTGTTCAGTTG+TGG - chr5_3:31167482-31167501 Msa0807880:CDS 45.0%
CTCTTTAGCAGATGAAGGGT+TGG + chr5_3:31167512-31167531 None:intergenic 45.0%
CAACCCTTCATCTGCTAAAG+AGG - chr5_3:31167510-31167529 Msa0807880:intron 45.0%
TTGGTTTCGCCATCCAGAAA+CGG + chr5_3:31167635-31167654 None:intergenic 45.0%
CAAGCAGACAATAGGCTTGA+TGG + chr5_3:31167762-31167781 None:intergenic 45.0%
!! TGTTTGTTCAGGAAGTGCCT+AGG - chr5_3:31167861-31167880 Msa0807880:CDS 45.0%
GCGATTTCCTCTTTGTGGAA+TGG + chr5_3:31167932-31167951 None:intergenic 45.0%
GAACTTGTAGCAGGTACTTG+AGG + chr5_3:31168004-31168023 None:intergenic 45.0%
GGTTCAGTAGAACTTGTAGC+AGG + chr5_3:31168013-31168032 None:intergenic 45.0%
!! TTGTTGCCGCTTTCAACAAC+TGG + chr5_3:31168034-31168053 None:intergenic 45.0%
TTGCATGCCCTTCAACAACT+TGG - chr5_3:31168118-31168137 Msa0807880:intron 45.0%
TGAACCGCCAAGTTGTTGAA+GGG + chr5_3:31168128-31168147 None:intergenic 45.0%
TTGAACCGCCAAGTTGTTGA+AGG + chr5_3:31168129-31168148 None:intergenic 45.0%
CGGGAACTAATGAAAGTCGA+TGG - chr5_3:31168264-31168283 Msa0807880:CDS 45.0%
! GGTAAAAATCCGTGGATTGC+AGG + chr5_3:31168412-31168431 None:intergenic 45.0%
AATTTCGTCTGCACACGAGA+AGG - chr5_3:31168652-31168671 Msa0807880:CDS 45.0%
CTGCACCATATTCTTGTGGT+TGG + chr5_3:31168746-31168765 None:intergenic 45.0%
GCTACTGCACCATATTCTTG+TGG + chr5_3:31168750-31168769 None:intergenic 45.0%
!!! TCCTGACACTGTTGTTTTGG+TGG + chr5_3:31168772-31168791 None:intergenic 45.0%
ACCACAGTTACTACTCCAAC+AGG - chr5_3:31168798-31168817 Msa0807880:five_prime_UTR 45.0%
TCCTGTTGGAGTAGTAACTG+TGG + chr5_3:31168802-31168821 None:intergenic 45.0%
GGGGAAACAGTTTGAGGAAG+AGG + chr5_3:31166963-31166982 None:intergenic 50.0%
! GAAGGTCTCTAGGGAAAACC+TGG + chr5_3:31167104-31167123 None:intergenic 50.0%
!! GCTTGATGGATTGAGTGACG+CGG + chr5_3:31167748-31167767 None:intergenic 50.0%
CAGCAGCGATTTCCTCTTTG+TGG + chr5_3:31167937-31167956 None:intergenic 50.0%
CATGCCCTTCAACAACTTGG+CGG - chr5_3:31168121-31168140 Msa0807880:intron 50.0%
GCCACCAAAACAACAGTGTC+AGG - chr5_3:31168768-31168787 Msa0807880:five_prime_UTR 50.0%
GATGAAGGATGTGTAGCCAC+AGG + chr5_3:31168834-31168853 None:intergenic 50.0%
AGTGGAACATGATGAGGCAG+GGG + chr5_3:31168946-31168965 None:intergenic 50.0%
GAGTGGAACATGATGAGGCA+GGG + chr5_3:31168947-31168966 None:intergenic 50.0%
TGAGTGGAACATGATGAGGC+AGG + chr5_3:31168948-31168967 None:intergenic 50.0%
GGGGAAACAGTTTGAGGAAG+AGG + chr5_3:31166963-31166982 None:intergenic 50.0%
! GAAGGTCTCTAGGGAAAACC+TGG + chr5_3:31167104-31167123 None:intergenic 50.0%
!! GCTTGATGGATTGAGTGACG+CGG + chr5_3:31167748-31167767 None:intergenic 50.0%
CAGCAGCGATTTCCTCTTTG+TGG + chr5_3:31167937-31167956 None:intergenic 50.0%
CATGCCCTTCAACAACTTGG+CGG - chr5_3:31168121-31168140 Msa0807880:intron 50.0%
GCCACCAAAACAACAGTGTC+AGG - chr5_3:31168768-31168787 Msa0807880:five_prime_UTR 50.0%
GATGAAGGATGTGTAGCCAC+AGG + chr5_3:31168834-31168853 None:intergenic 50.0%
AGTGGAACATGATGAGGCAG+GGG + chr5_3:31168946-31168965 None:intergenic 50.0%
GAGTGGAACATGATGAGGCA+GGG + chr5_3:31168947-31168966 None:intergenic 50.0%
TGAGTGGAACATGATGAGGC+AGG + chr5_3:31168948-31168967 None:intergenic 50.0%
! GTTGTGCCGCTAACCGTTTC+TGG - chr5_3:31167619-31167638 Msa0807880:CDS 55.0%
! TGCCGCTAACCGTTTCTGGA+TGG - chr5_3:31167623-31167642 Msa0807880:CDS 55.0%
CGCCATCCAGAAACGGTTAG+CGG + chr5_3:31167628-31167647 None:intergenic 55.0%
GGTACTTGAGGCGAACTGGT+TGG + chr5_3:31167992-31168011 None:intergenic 55.0%
AGCAGGTACTTGAGGCGAAC+TGG + chr5_3:31167996-31168015 None:intergenic 55.0%
AAGGTCAGAGGAAGCAGCGT+CGG - chr5_3:31168065-31168084 Msa0807880:intron 55.0%
! GTTGTGCCGCTAACCGTTTC+TGG - chr5_3:31167619-31167638 Msa0807880:CDS 55.0%
! TGCCGCTAACCGTTTCTGGA+TGG - chr5_3:31167623-31167642 Msa0807880:CDS 55.0%
CGCCATCCAGAAACGGTTAG+CGG + chr5_3:31167628-31167647 None:intergenic 55.0%
GGTACTTGAGGCGAACTGGT+TGG + chr5_3:31167992-31168011 None:intergenic 55.0%
AGCAGGTACTTGAGGCGAAC+TGG + chr5_3:31167996-31168015 None:intergenic 55.0%
AAGGTCAGAGGAAGCAGCGT+CGG - chr5_3:31168065-31168084 Msa0807880:intron 55.0%
CTGCCACGCCGAAACAGATC+CGG - chr5_3:31168244-31168263 Msa0807880:CDS 60.0%
TGCCACGCCGAAACAGATCC+GGG - chr5_3:31168245-31168264 Msa0807880:CDS 60.0%
TTCCCGGATCTGTTTCGGCG+TGG + chr5_3:31168250-31168269 None:intergenic 60.0%
CTGCCACGCCGAAACAGATC+CGG - chr5_3:31168244-31168263 Msa0807880:CDS 60.0%
TGCCACGCCGAAACAGATCC+GGG - chr5_3:31168245-31168264 Msa0807880:CDS 60.0%
TTCCCGGATCTGTTTCGGCG+TGG + chr5_3:31168250-31168269 None:intergenic 60.0%
!! AGAGGAAGCAGCGTCGGTGC+TGG - chr5_3:31168071-31168090 Msa0807880:intron 65.0%
!! AGAGGAAGCAGCGTCGGTGC+TGG - chr5_3:31168071-31168090 Msa0807880:intron 65.0%
!! GCAGCGTCGGTGCTGGTCAC+AGG - chr5_3:31168078-31168097 Msa0807880:intron 70.0%
!! GCAGCGTCGGTGCTGGTCAC+AGG - chr5_3:31168078-31168097 Msa0807880:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 31166770 31168992 31166770 ID=Msa0807880;Name=Msa0807880
chr5_3 mRNA 31166770 31168992 31166770 ID=Msa0807880-mRNA-1;Parent=Msa0807880;Name=Msa0807880-mRNA-1;_AED=0.08;_eAED=0.08;_QI=239|1|0.8|1|1|1|5|0|362
chr5_3 exon 31166770 31167111 31166770 ID=Msa0807880-mRNA-1:exon:10372;Parent=Msa0807880-mRNA-1
chr5_3 exon 31167442 31167518 31167442 ID=Msa0807880-mRNA-1:exon:10371;Parent=Msa0807880-mRNA-1
chr5_3 exon 31167611 31167890 31167611 ID=Msa0807880-mRNA-1:exon:10370;Parent=Msa0807880-mRNA-1
chr5_3 exon 31168231 31168478 31168231 ID=Msa0807880-mRNA-1:exon:10369;Parent=Msa0807880-mRNA-1
chr5_3 exon 31168612 31168992 31168612 ID=Msa0807880-mRNA-1:exon:10368;Parent=Msa0807880-mRNA-1
chr5_3 five_prime_UTR 31168754 31168992 31168754 ID=Msa0807880-mRNA-1:five_prime_utr;Parent=Msa0807880-mRNA-1
chr5_3 CDS 31168612 31168753 31168612 ID=Msa0807880-mRNA-1:cds;Parent=Msa0807880-mRNA-1
chr5_3 CDS 31168231 31168478 31168231 ID=Msa0807880-mRNA-1:cds;Parent=Msa0807880-mRNA-1
chr5_3 CDS 31167611 31167890 31167611 ID=Msa0807880-mRNA-1:cds;Parent=Msa0807880-mRNA-1
chr5_3 CDS 31167442 31167518 31167442 ID=Msa0807880-mRNA-1:cds;Parent=Msa0807880-mRNA-1
chr5_3 CDS 31166770 31167111 31166770 ID=Msa0807880-mRNA-1:cds;Parent=Msa0807880-mRNA-1
Gene Sequence

>Msa0807880

ATGGTTTCAATGCAATTCGATGATAAAATGCACTCGCATAAAATGGAATTTCGTGACTATATCCTAGCATTGGAAGAAGAAAAGAAGAAAATCCAGGTTTTCCCTAGAGACCTTCCTCTTTCTCTTGAGCTTGTTACACAAGCCATCGAAACGTGTAAGCAACAGTTGTTTGGAACACAATCGGAGTGTTCGGAACAGACATCAACTGATGAAGGCCTTGTTTTTGAGGAGTTTATTCCTATCAAGAAAAGGGCATTGTCCCCCAATTGCGATGAAAATGATGAGGAAGATGATGATGATAATGATGAGCAACATTCATCACATAAGATGAAATCTGATTGGCTAAGATCTGTTCAGTTGTGGAATCCCAACCCTTCATCTGCTAAAGAGGAAGTGCCTAGGAAAACAAATGTTGTAGAAGTGAAGAGAAATGGTGGAGCATTTCAACCATTCCACAAAGAGGAAATCGCTGCTGAAAAAGATAATGCGTTAGAAAGTGATAAAGCACCAACCAGTTCGCCTCAAGTACCTGCTACAAGTTCTACTGAACCAGTTGTTGAAAGCGGCAACAAAAGAGACGATAAAGGTCAGAGGAAGCAGCGTCGGTGCTGGTCACAGGAATTGCACAAACGCTTCTTGCATGCCCTTCAACAACTTGGCGGTTCAAATTCTGCCACGCCGAAACAGATCCGGGAACTAATGAAAGTCGATGGCCTCACCAACGATGAAGTCAAAAGTCATTTGCAGAAATTTCGTCTGCACACGAGAAGGAGCCCAATAATTCACAACAATTCTAATTCACATACAGCTCCTATGTTCTTAGTAGGGAACATTTATGTCCAACCACAAGAATATGGTGCAGTAGCCACCAAAACAACAGTGTCAGGAGAATTGACCACAGTTACTACTCCAACAGGAATTTATGCACCTGTGGCTACACATCCTTCATCTACAACAACAGTTATAAAACCAAAGTTTAAGAAATTTGAGTTGAGTGAGAATTCACATTCTGTAGAAAGAGTTGTTGCTCATTCTAACTCCCCTGCCTCATCATGTTCCACTCATACACCTACAACTTCAAGATGCTGA
Protein sequence

>Msa0807880

MVSMQFDDKMHSHKMEFRDYILALEEEKKKIQVFPRDLPLSLELVTQAIETCKQQLFGTQSECSEQTSTDEGLVFEEFIPIKKRALSPNCDENDEEDDDDNDEQHSSHKMKSDWLRSVQLWNPNPSSAKEEVPRKTNVVEVKRNGGAFQPFHKEEIAAEKDNALESDKAPTSSPQVPATSSTEPVVESGNKRDDKGQRKQRRCWSQELHKRFLHALQQLGGSNSATPKQIRELMKVDGLTNDEVKSHLQKFRLHTRRSPIIHNNSNSHTAPMFLVGNIYVQPQEYGAVATKTTVSGELTTVTTPTGIYAPVATHPSSTTTVIKPKFKKFELSENSHSVERVVAHSNSPASSCSTHTPTTSRC*