AlfalfaGEDB | Msa0807880

M. sativa cultivar zhongmu-4 / Msa0807880

KEGG: -
GO: GO:0000156 GO:0000160 GO:0001101 GO:0001763 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009267 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009737 GO:0009755 GO:0009787 GO:0009788 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009966 GO:0009968 GO:0009987 GO:0009991 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010223 GO:0010346 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016036 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031537 GO:0031667 GO:0031668 GO:0031669 GO:0032101 GO:0032104 GO:0032107 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033993 GO:0035556 GO:0040008 GO:0042221 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048519 GO:0048523 GO:0048532 GO:0048580 GO:0048583 GO:0048585 GO:0048638 GO:0048646 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051172 GO:0051193 GO:0051239 GO:0051252 GO:0051253 GO:0051716 GO:0055062 GO:0055081 GO:0055083 GO:0060089 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071496 GO:0072505 GO:0072506 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0090506 GO:0090548 GO:0097159 GO:0097305 GO:0098727 GO:0098771 GO:0099402 GO:0140110 GO:1901363 GO:1901401 GO:1901419 GO:1901420 GO:1901463 GO:1901698 GO:1901699 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905393 GO:1905957 GO:1905958 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000280 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0807880	XP_003614475.2	96.961	362	10	1	1	362	1	361	0.0	725

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0807880	sp\|Q9FPE8\|HHO3_ARATH	47.337	338	138	11	1	320	1	316	1.55e-81	255

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0807880	G7JYB4	96.961	362	10	1	1	362	1	361	0.0	725

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TFs/TRs:

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Gene ID	Type	Classification
Msa0807880	TF	GARP-G2-like

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0807880	Msa0848730	0.954976	8.744360e-113	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0807880	MtrunA17_Chr5g0422621	96.961	362	10	1	1	362	1	361	0.0	725
Msa0807880	MtrunA17_Chr1g0198601	59.078	347	115	10	10	332	1	344	2.76e-126	367
Msa0807880	MtrunA17_Chr4g0062921	38.012	342	148	14	12	310	30	350	1.23e-51	177
Msa0807880	MtrunA17_Chr4g0045361	34.783	345	144	13	16	296	41	368	6.95e-43	154
Msa0807880	MtrunA17_Chr5g0402631	37.849	251	109	7	19	260	63	275	6.19e-37	136
Msa0807880	MtrunA17_Chr5g0400241	49.333	75	34	3	193	266	304	375	7.41e-14	72.8
Msa0807880	MtrunA17_Chr4g0054981	44.211	95	41	3	173	256	273	366	1.16e-13	72.0
Msa0807880	MtrunA17_Chr7g0261911	45.783	83	45	0	175	257	238	320	1.96e-13	71.2
Msa0807880	MtrunA17_Chr3g0137101	33.600	125	77	3	188	307	186	309	2.73e-13	71.2
Msa0807880	MtrunA17_Chr1g0190301	58.929	56	23	0	197	252	173	228	3.49e-13	70.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0807880	AT1G25550.1	47.337	338	138	11	1	320	1	316	1.57e-82	255
Msa0807880	AT1G68670.1	46.686	347	127	13	1	313	2	324	7.61e-77	241
Msa0807880	AT1G25550.2	52.273	264	106	8	1	249	1	259	5.25e-72	226
Msa0807880	AT3G25790.1	43.089	369	143	14	19	358	20	350	2.12e-63	206
Msa0807880	AT1G13300.1	44.444	288	99	9	20	285	20	268	2.07e-61	201
Msa0807880	AT3G25790.2	44.355	248	100	6	19	249	20	246	1.59e-47	162
Msa0807880	AT2G03500.1	34.627	335	154	11	1	294	18	328	1.23e-44	159
Msa0807880	AT4G37180.1	34.572	269	121	7	11	260	39	271	1.03e-32	125
Msa0807880	AT4G37180.2	33.829	269	130	7	11	260	39	278	1.04e-31	123
Msa0807880	AT4G37180.3	34.351	262	109	8	11	249	39	260	4.81e-28	111

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Find 95 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAGGCAAGAATATTAA+AGG	0.309301	5_3:-31168978	None:intergenic
AAAGAGACGATAAAGGTCAG+AGG	0.623540	5_3:-31167687	Msa0807880:CDS
AACAGGAATTTATGCACCTG+TGG	0.600669	5_3:-31166925	Msa0807880:CDS
AACTCAAATTTCTTAAACTT+TGG	0.298267	5_3:+31166867	None:intergenic
AAGGTCAGAGGAAGCAGCGT+CGG	0.617450	5_3:-31167675	Msa0807880:CDS
AATTTCGTCTGCACACGAGA+AGG	0.610345	5_3:-31167088	Msa0807880:CDS
ACAGCTCCTATGTTCTTAGT+AGG	0.381283	5_3:-31167032	Msa0807880:CDS
ACAGGTGCATAAATTCCTGT+TGG	0.585331	5_3:+31166927	None:intergenic
ACAGTTGTTTGGAACACAAT+CGG	0.495980	5_3:-31168437	Msa0807880:CDS
ACAGTTTGAGGAAGAGGGTA+AGG	0.452074	5_3:+31168786	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGGCTTATAAACATTGAGTT+CGG	+	chr5_3:31166818-31166837	None:intergenic	30.0%
TAAACTTTCAAGAGAGAGAA+TGG	+	chr5_3:31166838-31166857	None:intergenic	30.0%
GAATATATAGGGAATGAATG+AGG	+	chr5_3:31166932-31166951	None:intergenic	30.0%
AGGGTAAGGATGAATATATA+GGG	+	chr5_3:31166943-31166962	None:intergenic	30.0%
TAAAATGCACTCGCATAAAA+TGG	-	chr5_3:31167032-31167051	Msa0807880:CDS	30.0%
AGAAGAAAAGAAGAAAATCC+AGG	-	chr5_3:31167083-31167102	Msa0807880:CDS	30.0%
GAATAAACTCCTCAAAAACA+AGG	+	chr5_3:31167360-31167379	None:intergenic	30.0%
CACATAAGATGAAATCTGAT+TGG	-	chr5_3:31167461-31167480	Msa0807880:CDS	30.0%
CGTACAAAAAAATTCGACTT+TGG	+	chr5_3:31167551-31167570	None:intergenic	30.0%
GAAAATTACATTGGACTGAA+AGG	-	chr5_3:31167582-31167601	Msa0807880:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	31166770	31168992	31166770	ID=Msa0807880;Name=Msa0807880
chr5_3	mRNA	31166770	31168992	31166770	ID=Msa0807880-mRNA-1;Parent=Msa0807880;Name=Msa0807880-mRNA-1;_AED=0.08;_eAED=0.08;_QI=239\|1\|0.8\|1\|1\|1\|5\|0\|362
chr5_3	exon	31166770	31167111	31166770	ID=Msa0807880-mRNA-1:exon:10372;Parent=Msa0807880-mRNA-1
chr5_3	exon	31167442	31167518	31167442	ID=Msa0807880-mRNA-1:exon:10371;Parent=Msa0807880-mRNA-1
chr5_3	exon	31167611	31167890	31167611	ID=Msa0807880-mRNA-1:exon:10370;Parent=Msa0807880-mRNA-1
chr5_3	exon	31168231	31168478	31168231	ID=Msa0807880-mRNA-1:exon:10369;Parent=Msa0807880-mRNA-1
chr5_3	exon	31168612	31168992	31168612	ID=Msa0807880-mRNA-1:exon:10368;Parent=Msa0807880-mRNA-1
chr5_3	five_prime_UTR	31168754	31168992	31168754	ID=Msa0807880-mRNA-1:five_prime_utr;Parent=Msa0807880-mRNA-1
chr5_3	CDS	31168612	31168753	31168612	ID=Msa0807880-mRNA-1:cds;Parent=Msa0807880-mRNA-1
chr5_3	CDS	31168231	31168478	31168231	ID=Msa0807880-mRNA-1:cds;Parent=Msa0807880-mRNA-1
chr5_3	CDS	31167611	31167890	31167611	ID=Msa0807880-mRNA-1:cds;Parent=Msa0807880-mRNA-1
chr5_3	CDS	31167442	31167518	31167442	ID=Msa0807880-mRNA-1:cds;Parent=Msa0807880-mRNA-1
chr5_3	CDS	31166770	31167111	31166770	ID=Msa0807880-mRNA-1:cds;Parent=Msa0807880-mRNA-1

Gene Sequence

>Msa0807880

ATGGTTTCAATGCAATTCGATGATAAAATGCACTCGCATAAAATGGAATTTCGTGACTATATCCTAGCATTGGAAGAAGAAAAGAAGAAAATCCAGGTTTTCCCTAGAGACCTTCCTCTTTCTCTTGAGCTTGTTACACAAGCCATCGAAACGTGTAAGCAACAGTTGTTTGGAACACAATCGGAGTGTTCGGAACAGACATCAACTGATGAAGGCCTTGTTTTTGAGGAGTTTATTCCTATCAAGAAAAGGGCATTGTCCCCCAATTGCGATGAAAATGATGAGGAAGATGATGATGATAATGATGAGCAACATTCATCACATAAGATGAAATCTGATTGGCTAAGATCTGTTCAGTTGTGGAATCCCAACCCTTCATCTGCTAAAGAGGAAGTGCCTAGGAAAACAAATGTTGTAGAAGTGAAGAGAAATGGTGGAGCATTTCAACCATTCCACAAAGAGGAAATCGCTGCTGAAAAAGATAATGCGTTAGAAAGTGATAAAGCACCAACCAGTTCGCCTCAAGTACCTGCTACAAGTTCTACTGAACCAGTTGTTGAAAGCGGCAACAAAAGAGACGATAAAGGTCAGAGGAAGCAGCGTCGGTGCTGGTCACAGGAATTGCACAAACGCTTCTTGCATGCCCTTCAACAACTTGGCGGTTCAAATTCTGCCACGCCGAAACAGATCCGGGAACTAATGAAAGTCGATGGCCTCACCAACGATGAAGTCAAAAGTCATTTGCAGAAATTTCGTCTGCACACGAGAAGGAGCCCAATAATTCACAACAATTCTAATTCACATACAGCTCCTATGTTCTTAGTAGGGAACATTTATGTCCAACCACAAGAATATGGTGCAGTAGCCACCAAAACAACAGTGTCAGGAGAATTGACCACAGTTACTACTCCAACAGGAATTTATGCACCTGTGGCTACACATCCTTCATCTACAACAACAGTTATAAAACCAAAGTTTAAGAAATTTGAGTTGAGTGAGAATTCACATTCTGTAGAAAGAGTTGTTGCTCATTCTAACTCCCCTGCCTCATCATGTTCCACTCATACACCTACAACTTCAAGATGCTGA

Protein sequence

>Msa0807880

MVSMQFDDKMHSHKMEFRDYILALEEEKKKIQVFPRDLPLSLELVTQAIETCKQQLFGTQSECSEQTSTDEGLVFEEFIPIKKRALSPNCDENDEEDDDDNDEQHSSHKMKSDWLRSVQLWNPNPSSAKEEVPRKTNVVEVKRNGGAFQPFHKEEIAAEKDNALESDKAPTSSPQVPATSSTEPVVESGNKRDDKGQRKQRRCWSQELHKRFLHALQQLGGSNSATPKQIRELMKVDGLTNDEVKSHLQKFRLHTRRSPIIHNNSNSHTAPMFLVGNIYVQPQEYGAVATKTTVSGELTTVTTPTGIYAPVATHPSSTTTVIKPKFKKFELSENSHSVERVVAHSNSPASSCSTHTPTTSRC*