AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0848730

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0848730 MtrunA17_Chr5g0422621 94.490 363 18 2 1 363 1 361 0.0 688
Msa0848730 MtrunA17_Chr1g0198601 58.908 348 115 11 10 333 1 344 1.63e-124 363
Msa0848730 MtrunA17_Chr4g0062921 38.012 342 148 14 12 310 30 350 1.12e-51 177
Msa0848730 MtrunA17_Chr4g0045361 34.783 345 144 13 16 296 41 368 6.97e-43 154
Msa0848730 MtrunA17_Chr5g0402631 37.849 251 109 7 19 260 63 275 6.20e-37 136
Msa0848730 MtrunA17_Chr5g0400241 49.333 75 34 3 193 266 304 375 8.49e-14 72.4
Msa0848730 MtrunA17_Chr4g0054981 44.211 95 41 3 173 256 273 366 1.25e-13 72.0
Msa0848730 MtrunA17_Chr7g0261911 45.783 83 45 0 175 257 238 320 1.96e-13 71.2
Msa0848730 MtrunA17_Chr3g0137101 33.600 125 77 3 188 307 186 309 2.73e-13 71.2
Msa0848730 MtrunA17_Chr1g0161431 45.333 75 40 1 193 267 194 267 3.16e-13 70.9
Msa0848730 MtrunA17_Chr1g0190301 58.929 56 23 0 197 252 173 228 3.55e-13 70.1
Msa0848730 MtrunA17_Chr2g0291021 58.182 55 23 0 199 253 49 103 4.18e-13 69.7
Msa0848730 MtrunA17_Chr4g0067981 41.053 95 43 3 198 290 214 297 4.52e-13 70.5
Msa0848730 MtrunA17_Chr7g0255711 44.156 77 42 1 181 257 73 148 7.65e-13 68.6
Msa0848730 MtrunA17_Chr7g0254981 55.172 58 26 0 196 253 47 104 8.70e-13 68.2
Msa0848730 MtrunA17_Chr7g0274471 58.929 56 23 0 197 252 216 271 1.19e-12 68.9
Msa0848730 MtrunA17_Chr2g0304841 36.207 116 66 4 197 310 211 320 1.31e-12 68.9
Msa0848730 MtrunA17_Chr1g0175081 40.000 75 44 1 201 274 24 98 1.58e-12 63.2
Msa0848730 MtrunA17_Chr2g0288601 41.111 90 41 2 164 253 48 125 2.20e-12 63.9
Msa0848730 MtrunA17_Chr2g0294911 34.746 118 71 3 198 310 210 326 2.41e-12 68.2
Msa0848730 MtrunA17_Chr2g0321461 41.379 87 46 1 172 253 13 99 2.68e-12 67.4
Msa0848730 MtrunA17_Chr8g0356501 58.182 55 23 0 199 253 37 91 3.69e-12 66.6
Msa0848730 MtrunA17_Chr1g0149841 50.820 61 29 1 197 257 189 248 5.54e-12 67.0
Msa0848730 MtrunA17_Chr5g0417521 54.545 55 25 0 199 253 15 69 5.97e-12 66.2
Msa0848730 MtrunA17_Chr4g0031961 42.105 76 43 1 198 273 130 204 6.02e-12 65.9
Msa0848730 MtrunA17_Chr4g0009901 47.561 82 34 3 185 258 146 226 6.10e-12 65.5
Msa0848730 MtrunA17_Chr1g0149831 48.387 62 28 1 196 257 125 182 7.26e-12 64.7
Msa0848730 MtrunA17_Chr2g0310011 58.182 55 23 0 199 253 35 89 8.54e-12 65.9
Msa0848730 MtrunA17_Chr2g0290991 56.364 55 24 0 199 253 39 93 1.16e-11 65.1
Msa0848730 MtrunA17_Chr1g0175091 41.772 79 37 1 184 253 234 312 1.89e-11 65.1
Msa0848730 MtrunA17_Chr2g0324891 34.951 103 59 2 154 256 123 217 2.02e-11 65.1
Msa0848730 MtrunA17_Chr4g0074411 49.180 61 30 1 197 257 199 258 2.17e-11 65.1
Msa0848730 MtrunA17_Chr7g0243081 55.102 49 22 0 204 252 76 124 4.07e-11 63.5
Msa0848730 MtrunA17_Chr4g0042451 52.727 55 26 0 199 253 17 71 4.63e-11 63.5
Msa0848730 MtrunA17_Chr1g0210911 55.102 49 22 0 204 252 27 75 4.90e-11 63.2
Msa0848730 MtrunA17_Chr4g0040481 45.161 62 33 1 195 256 154 214 6.00e-11 63.5
Msa0848730 MtrunA17_Chr1g0197171 54.545 55 25 0 199 253 44 98 6.68e-11 62.8
Msa0848730 MtrunA17_Chr6g0461641 45.205 73 39 1 199 271 42 113 6.74e-11 63.2
Msa0848730 MtrunA17_Chr6g0479431 50.794 63 28 1 190 252 196 255 8.53e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0848730 AT1G25550.1 47.337 338 138 11 1 320 1 316 1.59e-82 255
Msa0848730 AT1G68670.1 46.686 347 127 13 1 313 2 324 7.61e-77 241
Msa0848730 AT1G25550.2 52.273 264 106 8 1 249 1 259 5.77e-72 226
Msa0848730 AT3G25790.1 42.779 367 148 13 19 359 20 350 1.60e-62 204
Msa0848730 AT1G13300.1 44.444 288 99 9 20 285 20 268 1.98e-61 201
Msa0848730 AT3G25790.2 44.355 248 100 6 19 249 20 246 1.88e-47 162
Msa0848730 AT2G03500.1 34.627 335 154 11 1 294 18 328 1.28e-44 159
Msa0848730 AT4G37180.1 34.572 269 121 7 11 260 39 271 1.06e-32 125
Msa0848730 AT4G37180.2 33.829 269 130 7 11 260 39 278 1.30e-31 122
Msa0848730 AT4G37180.3 34.351 262 109 8 11 249 39 260 5.36e-28 111
Msa0848730 AT1G49560.1 32.246 276 135 10 19 279 30 268 1.47e-25 105
Msa0848730 AT1G49560.2 32.245 245 120 8 19 249 30 242 3.98e-21 92.0
Msa0848730 AT2G25180.1 37.600 125 63 4 197 307 193 316 1.14e-13 72.8
Msa0848730 AT5G58080.1 47.222 72 34 2 189 257 181 251 1.49e-13 72.4
Msa0848730 AT5G18240.2 42.857 91 46 2 168 253 10 99 2.51e-13 71.2
Msa0848730 AT5G18240.3 42.857 91 46 2 168 253 10 99 2.51e-13 71.2
Msa0848730 AT5G18240.5 42.857 91 46 2 168 253 10 99 3.09e-13 70.9
Msa0848730 AT5G18240.1 42.857 91 46 2 168 253 10 99 3.28e-13 70.9
Msa0848730 AT5G18240.4 42.857 91 46 2 168 253 10 99 3.28e-13 70.9
Msa0848730 AT5G05090.1 44.872 78 42 1 180 257 62 138 3.36e-13 69.3
Msa0848730 AT2G01060.1 58.182 55 23 0 199 253 15 69 3.53e-13 69.7
Msa0848730 AT3G10760.1 46.667 75 36 2 186 257 89 162 6.74e-13 69.3
Msa0848730 AT2G06020.1 44.737 76 34 1 186 253 65 140 1.17e-12 68.2
Msa0848730 AT3G16857.3 47.945 73 35 2 187 257 153 224 2.27e-12 68.6
Msa0848730 AT3G16857.2 47.945 73 35 2 187 257 223 294 2.60e-12 68.6
Msa0848730 AT2G40970.1 51.667 60 28 1 198 257 104 162 3.17e-12 66.2
Msa0848730 AT3G16857.1 47.945 73 35 2 187 257 223 294 3.29e-12 68.2
Msa0848730 AT2G20400.2 59.259 54 22 0 199 252 231 284 3.96e-12 67.4
Msa0848730 AT2G20400.1 59.259 54 22 0 199 252 231 284 4.13e-12 67.4
Msa0848730 AT3G04030.1 43.678 87 43 2 172 253 14 99 4.30e-12 67.4
Msa0848730 AT3G04030.3 43.678 87 43 2 172 253 14 99 4.68e-12 67.0
Msa0848730 AT2G01760.1 31.707 164 96 5 198 361 199 346 5.04e-12 67.0
Msa0848730 AT4G13640.2 58.182 55 23 0 199 253 37 91 5.72e-12 66.2
Msa0848730 AT4G13640.1 58.182 55 23 0 199 253 37 91 5.89e-12 66.2
Msa0848730 AT2G01760.2 31.707 164 96 5 198 361 227 374 5.92e-12 67.0
Msa0848730 AT2G01760.3 31.707 164 96 5 198 361 134 281 6.53e-12 66.2
Msa0848730 AT3G24120.1 58.182 55 23 0 199 253 41 95 7.42e-12 65.9
Msa0848730 AT3G24120.2 58.182 55 23 0 199 253 41 95 7.75e-12 65.9
Msa0848730 AT4G28610.1 47.761 67 35 0 186 252 212 278 8.17e-12 66.6
Msa0848730 AT5G59570.2 47.619 63 32 1 195 257 137 198 8.42e-12 65.9
Msa0848730 AT5G59570.1 47.619 63 32 1 195 257 137 198 8.42e-12 65.9
Msa0848730 AT1G79430.2 58.182 55 23 0 199 253 34 88 1.33e-11 65.5
Msa0848730 AT3G46640.3 42.105 76 43 1 198 273 143 217 1.44e-11 65.1
Msa0848730 AT3G46640.2 42.105 76 43 1 198 273 143 217 1.47e-11 65.1
Msa0848730 AT3G46640.1 42.105 76 43 1 198 273 143 217 1.47e-11 65.1
Msa0848730 AT3G12730.1 56.364 55 24 0 199 253 23 77 1.91e-11 63.9
Msa0848730 AT4G04605.1 53.846 52 24 0 201 252 16 67 2.09e-11 63.5
Msa0848730 AT3G04450.3 55.556 54 24 0 199 252 238 291 2.43e-11 64.3
Msa0848730 AT4G31920.1 48.571 70 34 2 189 257 172 240 2.56e-11 65.5
Msa0848730 AT5G29000.4 45.833 72 39 0 181 252 213 284 2.72e-11 64.3
Msa0848730 AT3G04450.1 55.556 54 24 0 199 252 238 291 4.36e-11 64.3
Msa0848730 AT3G04450.4 55.556 54 24 0 199 252 198 251 4.50e-11 64.3
Msa0848730 AT3G04450.2 55.556 54 24 0 199 252 198 251 4.50e-11 64.3
Msa0848730 AT4G18020.8 41.573 89 47 3 182 268 277 362 4.54e-11 64.3
Msa0848730 AT4G18020.11 41.573 89 47 3 182 268 277 362 4.54e-11 64.3
Msa0848730 AT4G18020.4 41.573 89 47 3 182 268 277 362 4.54e-11 64.3
Msa0848730 AT4G18020.5 41.573 89 47 3 182 268 277 362 4.54e-11 64.3
Msa0848730 AT4G18020.10 41.573 89 47 3 182 268 277 362 4.54e-11 64.3
Msa0848730 AT4G18020.7 41.573 89 47 3 182 268 277 362 4.54e-11 64.3
Msa0848730 AT4G18020.3 41.573 89 47 3 182 268 277 362 4.86e-11 64.3
Msa0848730 AT4G18020.2 41.573 89 47 3 182 268 277 362 4.86e-11 64.3
Msa0848730 AT4G18020.1 41.573 89 47 3 182 268 277 362 4.86e-11 64.3
Msa0848730 AT4G18020.6 41.573 89 47 3 182 268 277 362 4.86e-11 64.3
Msa0848730 AT4G18020.9 41.573 89 47 3 182 268 277 362 4.86e-11 64.3
Msa0848730 AT5G06800.3 50.909 55 27 0 199 253 192 246 4.99e-11 63.2
Msa0848730 AT3G13040.3 44.872 78 42 1 176 253 219 295 7.06e-11 63.9
Msa0848730 AT3G13040.1 44.872 78 42 1 176 253 219 295 7.06e-11 63.9
Msa0848730 AT3G13040.2 44.872 78 42 1 176 253 219 295 7.06e-11 63.9
Msa0848730 AT5G29000.2 45.833 72 39 0 181 252 213 284 7.63e-11 63.5
Msa0848730 AT5G29000.1 45.833 72 39 0 181 252 170 241 9.54e-11 63.2
Msa0848730 AT5G29000.3 45.833 72 39 0 181 252 170 241 9.54e-11 63.2

Find 94 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTGAACAGAATCAAATTT+TGG 0.168091 5_4:+34365888 None:intergenic
GGATCCACCAATGAAGAATA+TGG 0.224409 5_4:+34365864 None:intergenic
TTAGAATTGTTGTGAATTAT+TGG 0.251586 5_4:+34364070 None:intergenic
TTCTCCTGACACTGTTGTTT+TGG 0.263091 5_4:+34363976 None:intergenic
TAAAATGCACTCGCATAAAA+TGG 0.284993 5_4:-34365716 Msa0848730:CDS
AAACCAGGCAAGAATATTAA+AGG 0.309301 5_4:-34365986 None:intergenic
CAGCAGCGATTTCCTCTTTG+TGG 0.314629 5_4:+34364814 None:intergenic
TTTCAGCATCTTGAAGTTGT+AGG 0.327142 5_4:+34363773 None:intergenic
ATTAGTTCCCGGATCTGTTT+CGG 0.330999 5_4:+34364496 None:intergenic
TTGTTGCCGCTTTCAACAAC+TGG 0.346746 5_4:+34364717 None:intergenic
TAGAATTGTTGTGAATTATT+GGG 0.348297 5_4:+34364071 None:intergenic
GAGGGTAAGGATGAATATAT+AGG 0.358023 5_4:+34365807 None:intergenic
TGAAGTCAAAAGTCATTTGC+AGG 0.374794 5_4:-34364449 Msa0848730:intron
ACAGCTCCTATGTTCTTAGT+AGG 0.381283 5_4:-34364040 Msa0848730:CDS
TGGCTTATAAACATTGAGTT+CGG 0.387647 5_4:+34365933 None:intergenic
ACGTGTAAGCAACAGTTGTT+TGG 0.397960 5_4:-34365456 Msa0848730:CDS
GGCTTATAAACATTGAGTTC+GGG 0.399400 5_4:+34365934 None:intergenic
AGAGAAAGAGGAAGGTCTCT+AGG 0.412125 5_4:+34365637 None:intergenic
TCAGATCCCATATTCTTCAT+TGG 0.415956 5_4:-34365871 Msa0848730:five_prime_UTR
GGGGAAACAGTTTGAGGAAG+AGG 0.418107 5_4:+34365788 None:intergenic
GCAGCGTCGGTGCTGGTCAC+AGG 0.421709 5_4:-34364670 Msa0848730:CDS
TATGTCCAACCACAAGAATA+TGG 0.427221 5_4:-34364010 Msa0848730:CDS
TATACCTCTTTAGCAGATGA+AGG 0.432154 5_4:+34365234 None:intergenic
TAAACTTTCAAGAGAGAGAA+TGG 0.433021 5_4:+34365913 None:intergenic
CTGCCACGCCGAAACAGATC+CGG 0.438655 5_4:-34364504 Msa0848730:CDS
TGGAACACAATCGGAGTGTT+CGG 0.442544 5_4:-34365436 Msa0848730:CDS
ACCACAGTTACTACTCCAAC+AGG 0.442991 5_4:-34363950 Msa0848730:CDS
CAACCCTTCATCTGCTAAAG+AGG 0.450187 5_4:-34365238 Msa0848730:intron
CATCGACTTTCATTAGTTCC+CGG 0.451625 5_4:+34364485 None:intergenic
ACAGTTTGAGGAAGAGGGTA+AGG 0.452074 5_4:+34365794 None:intergenic
AGTTTATTCCTATCAAGAAA+AGG 0.453926 5_4:-34365377 Msa0848730:CDS
AGCAGGTACTTGAGGCGAAC+TGG 0.464004 5_4:+34364755 None:intergenic
CATGCCCTTCAACAACTTGG+CGG 0.464333 5_4:-34364627 Msa0848730:CDS
TCTTTAGCAGATGAAGGGTT+GGG 0.465236 5_4:+34365240 None:intergenic
GATCCCATATTCTTCATTGG+TGG 0.473401 5_4:-34365868 Msa0848730:five_prime_UTR
GTTTATTCCTATCAAGAAAA+GGG 0.474072 5_4:-34365376 Msa0848730:CDS
CACATAAGATGAAATCTGAT+TGG 0.476812 5_4:-34365287 Msa0848730:CDS
TTGCATGCCCTTCAACAACT+TGG 0.479053 5_4:-34364630 Msa0848730:CDS
AGAGGAAGCAGCGTCGGTGC+TGG 0.486844 5_4:-34364677 Msa0848730:CDS
CTCTTTAGCAGATGAAGGGT+TGG 0.487382 5_4:+34365239 None:intergenic
GCCACCAAAACAACAGTGTC+AGG 0.487737 5_4:-34363980 Msa0848730:CDS
ATAACTGTTGTTGTAGATGA+AGG 0.491980 5_4:+34363902 None:intergenic
TTGAACCGCCAAGTTGTTGA+AGG 0.494195 5_4:+34364622 None:intergenic
GAGAAAGAGGAAGGTCTCTA+GGG 0.495572 5_4:+34365638 None:intergenic
GCGATTTCCTCTTTGTGGAA+TGG 0.495901 5_4:+34364819 None:intergenic
ACAGTTGTTTGGAACACAAT+CGG 0.495980 5_4:-34365445 Msa0848730:CDS
AGGGTAAGGATGAATATATA+GGG 0.496998 5_4:+34365808 None:intergenic
GTAACAAGCTCAAGAGAAAG+AGG 0.505480 5_4:+34365625 None:intergenic
GGGAAACAGTTTGAGGAAGA+GGG 0.507538 5_4:+34365789 None:intergenic
TGTTGAGGGGAAACAGTTTG+AGG 0.513525 5_4:+34365782 None:intergenic
AGAAGAAAAGAAGAAAATCC+AGG 0.515271 5_4:-34365665 Msa0848730:CDS
CTGCACCATATTCTTGTGGT+TGG 0.520262 5_4:+34364005 None:intergenic
GATCCACCAATGAAGAATAT+GGG 0.523876 5_4:+34365865 None:intergenic
GAAGGTCTCTAGGGAAAACC+TGG 0.528167 5_4:+34365647 None:intergenic
TGCCACGCCGAAACAGATCC+GGG 0.529744 5_4:-34364503 Msa0848730:CDS
GGCTAAGATCTGTTCAGTTG+TGG 0.535273 5_4:-34365266 Msa0848730:CDS
GTTGTAGAAGTGAAGAGAAA+TGG 0.535669 5_4:-34364855 Msa0848730:CDS
TTATGTGAATGTGTTGTTGA+GGG 0.540485 5_4:+34365768 None:intergenic
CTGTTGCTTACACGTTTCGA+TGG 0.543399 5_4:+34365464 None:intergenic
GGCAACAAAAGAGACGATAA+AGG 0.545011 5_4:-34364702 Msa0848730:CDS
ATTTCAACCATTCCACAAAG+AGG 0.547227 5_4:-34364826 Msa0848730:CDS
CAGCTCCTATGTTCTTAGTA+GGG 0.547398 5_4:-34364039 Msa0848730:CDS
GAACAGACATCAACTGATGA+AGG 0.553875 5_4:-34365414 Msa0848730:CDS
ATACCTCTTTAGCAGATGAA+GGG 0.556739 5_4:+34365235 None:intergenic
TGAACCGCCAAGTTGTTGAA+GGG 0.566682 5_4:+34364623 None:intergenic
TTTATGTGAATGTGTTGTTG+AGG 0.568338 5_4:+34365767 None:intergenic
GCTACTGCACCATATTCTTG+TGG 0.569246 5_4:+34364001 None:intergenic
TGAGTGGAACATGATGAGGC+AGG 0.570388 5_4:+34363800 None:intergenic
TCGTGACTATATCCTAGCAT+TGG 0.570432 5_4:-34365689 Msa0848730:CDS
GAGTGGAACATGATGAGGCA+GGG 0.580949 5_4:+34363801 None:intergenic
ACAGGTGCATAAATTCCTGT+TGG 0.585331 5_4:+34363935 None:intergenic
CAAGCTCAAGAGAAAGAGGA+AGG 0.593272 5_4:+34365629 None:intergenic
ATGTTCCCTACTAAGAACAT+AGG 0.593541 5_4:+34364034 None:intergenic
AGTGGAACATGATGAGGCAG+GGG 0.594079 5_4:+34363802 None:intergenic
AACAGGAATTTATGCACCTG+TGG 0.600669 5_4:-34363933 Msa0848730:CDS
GAACTTGTAGCAGGTACTTG+AGG 0.602704 5_4:+34364747 None:intergenic
TGTTTGTTCAGGAAGTGCCT+AGG 0.604873 5_4:-34364887 Msa0848730:intron
ACTGAACCAGTTGTTGAAAG+CGG 0.609363 5_4:-34364723 Msa0848730:CDS
AATTTCGTCTGCACACGAGA+AGG 0.610345 5_4:-34364096 Msa0848730:CDS
TATGTGAATGTGTTGTTGAG+GGG 0.612609 5_4:+34365769 None:intergenic
TCTCTTGAGCTTGTTACACA+AGG 0.614804 5_4:-34365619 Msa0848730:intron
GTAGAAGTGAAGAGAAATGG+TGG 0.614913 5_4:-34364852 Msa0848730:CDS
AAGGTCAGAGGAAGCAGCGT+CGG 0.617450 5_4:-34364683 Msa0848730:CDS
GGTTCAGTAGAACTTGTAGC+AGG 0.619585 5_4:+34364738 None:intergenic
AAAGAGACGATAAAGGTCAG+AGG 0.623540 5_4:-34364695 Msa0848730:CDS
CGGGAACTAATGAAAGTCGA+TGG 0.628624 5_4:-34364484 Msa0848730:CDS
GGTACTTGAGGCGAACTGGT+TGG 0.629043 5_4:+34364759 None:intergenic
GAATATATAGGGAATGAATG+AGG 0.643737 5_4:+34365819 None:intergenic
TGAAGTTGTAGGTGTATGAG+TGG 0.650979 5_4:+34363784 None:intergenic
GATGAAGGATGTGTAGCCAC+AGG 0.668784 5_4:+34363917 None:intergenic
CAATTGCGATGAAAATGATG+AGG 0.674430 5_4:-34365343 Msa0848730:CDS
TCCTGTTGGAGTAGTAACTG+TGG 0.676951 5_4:+34363949 None:intergenic
TTCCCGGATCTGTTTCGGCG+TGG 0.690024 5_4:+34364501 None:intergenic
TGTATGAGTGGAACATGATG+AGG 0.702899 5_4:+34363796 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAACATAAGGAAAAAAAAA+AGG + chr5_4:34364252-34364271 None:intergenic 15.0%
!! TTAATCATAGAAAATTACAT+TGG - chr5_4:34364578-34364597 Msa0848730:intron 15.0%
!! TCATTTATTAAAATCAACTT+TGG + chr5_4:34364659-34364678 None:intergenic 15.0%
!!! ATTTTTTCTTTGTTTCATAA+TGG - chr5_4:34364819-34364838 Msa0848730:CDS 15.0%
!!! GTCTAACTTTTTTTAATTTT+CGG - chr5_4:34365623-34365642 Msa0848730:CDS 15.0%
!!! TCAAATTTTTTCTTAAACTT+TGG + chr5_4:34365881-34365900 None:intergenic 15.0%
!! ATAACATAAGGAAAAAAAAA+AGG + chr5_4:34364252-34364271 None:intergenic 15.0%
!! TTAATCATAGAAAATTACAT+TGG - chr5_4:34364578-34364597 Msa0848730:intron 15.0%
!! TCATTTATTAAAATCAACTT+TGG + chr5_4:34364659-34364678 None:intergenic 15.0%
!!! ATTTTTTCTTTGTTTCATAA+TGG - chr5_4:34364819-34364838 Msa0848730:CDS 15.0%
!!! GTCTAACTTTTTTTAATTTT+CGG - chr5_4:34365623-34365642 Msa0848730:CDS 15.0%
!!! TCAAATTTTTTCTTAAACTT+TGG + chr5_4:34365881-34365900 None:intergenic 15.0%
!!! CACATTCACATAAATTTTAA+TGG - chr5_4:34363995-34364014 Msa0848730:CDS 20.0%
!!! AGTGTATATTTTTTTTCTTC+TGG + chr5_4:34364173-34364192 None:intergenic 20.0%
!! TATTCACAAAACATAACATA+AGG + chr5_4:34364264-34364283 None:intergenic 20.0%
!! TCTTCTTGATTGTTAAATTA+TGG - chr5_4:34365601-34365620 Msa0848730:intron 20.0%
!! TAGAATTGTTGTGAATTATT+GGG + chr5_4:34365685-34365704 None:intergenic 20.0%
!! TTAGAATTGTTGTGAATTAT+TGG + chr5_4:34365686-34365705 None:intergenic 20.0%
!!! CACATTCACATAAATTTTAA+TGG - chr5_4:34363995-34364014 Msa0848730:CDS 20.0%
!!! AGTGTATATTTTTTTTCTTC+TGG + chr5_4:34364173-34364192 None:intergenic 20.0%
!! TATTCACAAAACATAACATA+AGG + chr5_4:34364264-34364283 None:intergenic 20.0%
!! TCTTCTTGATTGTTAAATTA+TGG - chr5_4:34365601-34365620 Msa0848730:intron 20.0%
!! TAGAATTGTTGTGAATTATT+GGG + chr5_4:34365685-34365704 None:intergenic 20.0%
!! TTAGAATTGTTGTGAATTAT+TGG + chr5_4:34365686-34365705 None:intergenic 20.0%
!! ATCTGAACAGAATCAAATTT+TGG + chr5_4:34363868-34363887 None:intergenic 25.0%
! TTTGTCCAAATACAGAAAAA+CGG + chr5_4:34363913-34363932 None:intergenic 25.0%
! CAATGAAAGAAACATTAACA+TGG + chr5_4:34364206-34364225 None:intergenic 25.0%
! CATGTTAATGTTTCTTTCAT+TGG - chr5_4:34364204-34364223 Msa0848730:intron 25.0%
! AGTTTATTCCTATCAAGAAA+AGG - chr5_4:34364376-34364395 Msa0848730:intron 25.0%
! GTTTATTCCTATCAAGAAAA+GGG - chr5_4:34364377-34364396 Msa0848730:intron 25.0%
!! AGAATTTGAAATGTTTGTTC+AGG - chr5_4:34364855-34364874 Msa0848730:CDS 25.0%
! ACACAATTCACATTTAGATT+CGG + chr5_4:34365215-34365234 None:intergenic 25.0%
! AAAAAATCAAAACGATGAAG+TGG + chr5_4:34365338-34365357 None:intergenic 25.0%
! GACAAGGAAAATTATACAAA+TGG + chr5_4:34365364-34365383 None:intergenic 25.0%
! GATATACTTTAAGCTTGATT+TGG + chr5_4:34365476-34365495 None:intergenic 25.0%
!!! CTTTTTTTAATTTTCGGACA+TGG - chr5_4:34365629-34365648 Msa0848730:CDS 25.0%
!! ATCTGAACAGAATCAAATTT+TGG + chr5_4:34363868-34363887 None:intergenic 25.0%
! TTTGTCCAAATACAGAAAAA+CGG + chr5_4:34363913-34363932 None:intergenic 25.0%
! CAATGAAAGAAACATTAACA+TGG + chr5_4:34364206-34364225 None:intergenic 25.0%
! CATGTTAATGTTTCTTTCAT+TGG - chr5_4:34364204-34364223 Msa0848730:intron 25.0%
! AGTTTATTCCTATCAAGAAA+AGG - chr5_4:34364376-34364395 Msa0848730:intron 25.0%
! GTTTATTCCTATCAAGAAAA+GGG - chr5_4:34364377-34364396 Msa0848730:intron 25.0%
!! AGAATTTGAAATGTTTGTTC+AGG - chr5_4:34364855-34364874 Msa0848730:CDS 25.0%
! ACACAATTCACATTTAGATT+CGG + chr5_4:34365215-34365234 None:intergenic 25.0%
! AAAAAATCAAAACGATGAAG+TGG + chr5_4:34365338-34365357 None:intergenic 25.0%
! GACAAGGAAAATTATACAAA+TGG + chr5_4:34365364-34365383 None:intergenic 25.0%
! GATATACTTTAAGCTTGATT+TGG + chr5_4:34365476-34365495 None:intergenic 25.0%
!!! CTTTTTTTAATTTTCGGACA+TGG - chr5_4:34365629-34365648 Msa0848730:CDS 25.0%
TGGCTTATAAACATTGAGTT+CGG + chr5_4:34363823-34363842 None:intergenic 30.0%
TAAACTTTCAAGAGAGAGAA+TGG + chr5_4:34363843-34363862 None:intergenic 30.0%
GAATATATAGGGAATGAATG+AGG + chr5_4:34363937-34363956 None:intergenic 30.0%
AGGGTAAGGATGAATATATA+GGG + chr5_4:34363948-34363967 None:intergenic 30.0%
! TTATGTGAATGTGTTGTTGA+GGG + chr5_4:34363988-34364007 None:intergenic 30.0%
! TTTATGTGAATGTGTTGTTG+AGG + chr5_4:34363989-34364008 None:intergenic 30.0%
TAAAATGCACTCGCATAAAA+TGG - chr5_4:34364037-34364056 Msa0848730:CDS 30.0%
AGAAGAAAAGAAGAAAATCC+AGG - chr5_4:34364088-34364107 Msa0848730:CDS 30.0%
!! TGTTTCTTTCATTGGTTTCT+TGG - chr5_4:34364212-34364231 Msa0848730:intron 30.0%
GAATAAACTCCTCAAAAACA+AGG + chr5_4:34364365-34364384 None:intergenic 30.0%
! TCATCATTTTCATCGCAATT+GGG + chr5_4:34364411-34364430 None:intergenic 30.0%
CACATAAGATGAAATCTGAT+TGG - chr5_4:34364466-34364485 Msa0848730:CDS 30.0%
CGTACAAAAAAATTCGACTT+TGG + chr5_4:34364556-34364575 None:intergenic 30.0%
GAAAATTACATTGGACTGAA+AGG - chr5_4:34364587-34364606 Msa0848730:intron 30.0%
!! GAACTGTGAAACTTTTGATT+AGG - chr5_4:34364720-34364739 Msa0848730:CDS 30.0%
!! TCTACAACATTTGTTTTCCT+AGG + chr5_4:34364886-34364905 None:intergenic 30.0%
TTACTAACCACGTATAATCT+TGG + chr5_4:34365392-34365411 None:intergenic 30.0%
AGATGTCTAATCTTCATCTA+CGG + chr5_4:34365438-34365457 None:intergenic 30.0%
ATAACTGTTGTTGTAGATGA+AGG + chr5_4:34365854-34365873 None:intergenic 30.0%
TGGCTTATAAACATTGAGTT+CGG + chr5_4:34363823-34363842 None:intergenic 30.0%
TAAACTTTCAAGAGAGAGAA+TGG + chr5_4:34363843-34363862 None:intergenic 30.0%
GAATATATAGGGAATGAATG+AGG + chr5_4:34363937-34363956 None:intergenic 30.0%
AGGGTAAGGATGAATATATA+GGG + chr5_4:34363948-34363967 None:intergenic 30.0%
! TTATGTGAATGTGTTGTTGA+GGG + chr5_4:34363988-34364007 None:intergenic 30.0%
! TTTATGTGAATGTGTTGTTG+AGG + chr5_4:34363989-34364008 None:intergenic 30.0%
TAAAATGCACTCGCATAAAA+TGG - chr5_4:34364037-34364056 Msa0848730:CDS 30.0%
AGAAGAAAAGAAGAAAATCC+AGG - chr5_4:34364088-34364107 Msa0848730:CDS 30.0%
!! TGTTTCTTTCATTGGTTTCT+TGG - chr5_4:34364212-34364231 Msa0848730:intron 30.0%
GAATAAACTCCTCAAAAACA+AGG + chr5_4:34364365-34364384 None:intergenic 30.0%
! TCATCATTTTCATCGCAATT+GGG + chr5_4:34364411-34364430 None:intergenic 30.0%
CACATAAGATGAAATCTGAT+TGG - chr5_4:34364466-34364485 Msa0848730:CDS 30.0%
CGTACAAAAAAATTCGACTT+TGG + chr5_4:34364556-34364575 None:intergenic 30.0%
GAAAATTACATTGGACTGAA+AGG - chr5_4:34364587-34364606 Msa0848730:intron 30.0%
!! GAACTGTGAAACTTTTGATT+AGG - chr5_4:34364720-34364739 Msa0848730:CDS 30.0%
!! TCTACAACATTTGTTTTCCT+AGG + chr5_4:34364886-34364905 None:intergenic 30.0%
TTACTAACCACGTATAATCT+TGG + chr5_4:34365392-34365411 None:intergenic 30.0%
AGATGTCTAATCTTCATCTA+CGG + chr5_4:34365438-34365457 None:intergenic 30.0%
ATAACTGTTGTTGTAGATGA+AGG + chr5_4:34365854-34365873 None:intergenic 30.0%
GGCTTATAAACATTGAGTTC+GGG + chr5_4:34363822-34363841 None:intergenic 35.0%
TCAGATCCCATATTCTTCAT+TGG - chr5_4:34363882-34363901 Msa0848730:CDS 35.0%
GATCCACCAATGAAGAATAT+GGG + chr5_4:34363891-34363910 None:intergenic 35.0%
!! TGGATCCGTTTTTCTGTATT+TGG - chr5_4:34363905-34363924 Msa0848730:CDS 35.0%
GAGGGTAAGGATGAATATAT+AGG + chr5_4:34363949-34363968 None:intergenic 35.0%
! TATGTGAATGTGTTGTTGAG+GGG + chr5_4:34363987-34364006 None:intergenic 35.0%
! TCTTTTCTTCTTCCAATGCT+AGG + chr5_4:34364079-34364098 None:intergenic 35.0%
! ACAGTTGTTTGGAACACAAT+CGG - chr5_4:34364308-34364327 Msa0848730:intron 35.0%
! ATCATTTTCATCGCAATTGG+GGG + chr5_4:34364409-34364428 None:intergenic 35.0%
! CATCATTTTCATCGCAATTG+GGG + chr5_4:34364410-34364429 None:intergenic 35.0%
! CTCATCATTTTCATCGCAAT+TGG + chr5_4:34364412-34364431 None:intergenic 35.0%
CAATTGCGATGAAAATGATG+AGG - chr5_4:34364410-34364429 Msa0848730:intron 35.0%
ATACCTCTTTAGCAGATGAA+GGG + chr5_4:34364521-34364540 None:intergenic 35.0%
TATACCTCTTTAGCAGATGA+AGG + chr5_4:34364522-34364541 None:intergenic 35.0%
GTTGTAGAAGTGAAGAGAAA+TGG - chr5_4:34364898-34364917 Msa0848730:intron 35.0%
ATTTCAACCATTCCACAAAG+AGG - chr5_4:34364927-34364946 Msa0848730:intron 35.0%
!!! ATGACTTTTGACTTCATCGT+TGG + chr5_4:34365300-34365319 None:intergenic 35.0%
TGAAGTCAAAAGTCATTTGC+AGG - chr5_4:34365304-34365323 Msa0848730:CDS 35.0%
! TATAATCTTGGTCTGAGACA+AGG + chr5_4:34365380-34365399 None:intergenic 35.0%
AAGTATATCTCGAATACGAG+CGG - chr5_4:34365487-34365506 Msa0848730:intron 35.0%
CGGTCTAACCTTTAATCTAA+CGG - chr5_4:34365507-34365526 Msa0848730:intron 35.0%
GATCTTGACCGTTAGATTAA+AGG + chr5_4:34365518-34365537 None:intergenic 35.0%
ATGTTCCCTACTAAGAACAT+AGG + chr5_4:34365722-34365741 None:intergenic 35.0%
TATGTCCAACCACAAGAATA+TGG - chr5_4:34365743-34365762 Msa0848730:exon 35.0%
GGCTTATAAACATTGAGTTC+GGG + chr5_4:34363822-34363841 None:intergenic 35.0%
TCAGATCCCATATTCTTCAT+TGG - chr5_4:34363882-34363901 Msa0848730:CDS 35.0%
GATCCACCAATGAAGAATAT+GGG + chr5_4:34363891-34363910 None:intergenic 35.0%
!! TGGATCCGTTTTTCTGTATT+TGG - chr5_4:34363905-34363924 Msa0848730:CDS 35.0%
GAGGGTAAGGATGAATATAT+AGG + chr5_4:34363949-34363968 None:intergenic 35.0%
! TATGTGAATGTGTTGTTGAG+GGG + chr5_4:34363987-34364006 None:intergenic 35.0%
! TCTTTTCTTCTTCCAATGCT+AGG + chr5_4:34364079-34364098 None:intergenic 35.0%
! ACAGTTGTTTGGAACACAAT+CGG - chr5_4:34364308-34364327 Msa0848730:intron 35.0%
! ATCATTTTCATCGCAATTGG+GGG + chr5_4:34364409-34364428 None:intergenic 35.0%
! CATCATTTTCATCGCAATTG+GGG + chr5_4:34364410-34364429 None:intergenic 35.0%
! CTCATCATTTTCATCGCAAT+TGG + chr5_4:34364412-34364431 None:intergenic 35.0%
CAATTGCGATGAAAATGATG+AGG - chr5_4:34364410-34364429 Msa0848730:intron 35.0%
ATACCTCTTTAGCAGATGAA+GGG + chr5_4:34364521-34364540 None:intergenic 35.0%
TATACCTCTTTAGCAGATGA+AGG + chr5_4:34364522-34364541 None:intergenic 35.0%
GTTGTAGAAGTGAAGAGAAA+TGG - chr5_4:34364898-34364917 Msa0848730:intron 35.0%
ATTTCAACCATTCCACAAAG+AGG - chr5_4:34364927-34364946 Msa0848730:intron 35.0%
!!! ATGACTTTTGACTTCATCGT+TGG + chr5_4:34365300-34365319 None:intergenic 35.0%
TGAAGTCAAAAGTCATTTGC+AGG - chr5_4:34365304-34365323 Msa0848730:CDS 35.0%
! TATAATCTTGGTCTGAGACA+AGG + chr5_4:34365380-34365399 None:intergenic 35.0%
AAGTATATCTCGAATACGAG+CGG - chr5_4:34365487-34365506 Msa0848730:intron 35.0%
CGGTCTAACCTTTAATCTAA+CGG - chr5_4:34365507-34365526 Msa0848730:intron 35.0%
GATCTTGACCGTTAGATTAA+AGG + chr5_4:34365518-34365537 None:intergenic 35.0%
ATGTTCCCTACTAAGAACAT+AGG + chr5_4:34365722-34365741 None:intergenic 35.0%
TATGTCCAACCACAAGAATA+TGG - chr5_4:34365743-34365762 Msa0848730:exon 35.0%
GATCCCATATTCTTCATTGG+TGG - chr5_4:34363885-34363904 Msa0848730:CDS 40.0%
GGATCCACCAATGAAGAATA+TGG + chr5_4:34363892-34363911 None:intergenic 40.0%
TCGTGACTATATCCTAGCAT+TGG - chr5_4:34364064-34364083 Msa0848730:CDS 40.0%
GTAACAAGCTCAAGAGAAAG+AGG + chr5_4:34364131-34364150 None:intergenic 40.0%
!! TCTCTTGAGCTTGTTACACA+AGG - chr5_4:34364134-34364153 Msa0848730:intron 40.0%
ACGTGTAAGCAACAGTTGTT+TGG - chr5_4:34364297-34364316 Msa0848730:intron 40.0%
GAACAGACATCAACTGATGA+AGG - chr5_4:34364339-34364358 Msa0848730:intron 40.0%
!!! TGATGAAGGCCTTGTTTTTG+AGG - chr5_4:34364353-34364372 Msa0848730:intron 40.0%
! GACAATGCCCTTTTCTTGAT+AGG + chr5_4:34364387-34364406 None:intergenic 40.0%
TCTTTAGCAGATGAAGGGTT+GGG + chr5_4:34364516-34364535 None:intergenic 40.0%
GTATCAAGCAAGCAGACAAT+AGG + chr5_4:34364775-34364794 None:intergenic 40.0%
GTAGAAGTGAAGAGAAATGG+TGG - chr5_4:34364901-34364920 Msa0848730:intron 40.0%
ACTGAACCAGTTGTTGAAAG+CGG - chr5_4:34365030-34365049 Msa0848730:intron 40.0%
GGCAACAAAAGAGACGATAA+AGG - chr5_4:34365051-34365070 Msa0848730:intron 40.0%
AAAGAGACGATAAAGGTCAG+AGG - chr5_4:34365058-34365077 Msa0848730:intron 40.0%
ATTAGTTCCCGGATCTGTTT+CGG + chr5_4:34365260-34365279 None:intergenic 40.0%
!! CATCGACTTTCATTAGTTCC+CGG + chr5_4:34365271-34365290 None:intergenic 40.0%
!!! TTTTGACTTCATCGTTGGTG+AGG + chr5_4:34365295-34365314 None:intergenic 40.0%
TCTCAGACCAAGATTATACG+TGG - chr5_4:34365382-34365401 Msa0848730:CDS 40.0%
TTAGTAAACCCTGCAATCCA+CGG - chr5_4:34365405-34365424 Msa0848730:CDS 40.0%
! GTAAAAATCCGTGGATTGCA+GGG + chr5_4:34365416-34365435 None:intergenic 40.0%
TCATCTACGGTAAAAATCCG+TGG + chr5_4:34365425-34365444 None:intergenic 40.0%
AGTCGCAATTCTGATAGTCA+AGG + chr5_4:34365540-34365559 None:intergenic 40.0%
ACAGCTCCTATGTTCTTAGT+AGG - chr5_4:34365713-34365732 Msa0848730:CDS 40.0%
CAGCTCCTATGTTCTTAGTA+GGG - chr5_4:34365714-34365733 Msa0848730:CDS 40.0%
!! TTCTCCTGACACTGTTGTTT+TGG + chr5_4:34365780-34365799 None:intergenic 40.0%
ACAGGTGCATAAATTCCTGT+TGG + chr5_4:34365821-34365840 None:intergenic 40.0%
AACAGGAATTTATGCACCTG+TGG - chr5_4:34365820-34365839 Msa0848730:five_prime_UTR 40.0%
TGTATGAGTGGAACATGATG+AGG + chr5_4:34365960-34365979 None:intergenic 40.0%
TGAAGTTGTAGGTGTATGAG+TGG + chr5_4:34365972-34365991 None:intergenic 40.0%
GATCCCATATTCTTCATTGG+TGG - chr5_4:34363885-34363904 Msa0848730:CDS 40.0%
GGATCCACCAATGAAGAATA+TGG + chr5_4:34363892-34363911 None:intergenic 40.0%
TCGTGACTATATCCTAGCAT+TGG - chr5_4:34364064-34364083 Msa0848730:CDS 40.0%
GTAACAAGCTCAAGAGAAAG+AGG + chr5_4:34364131-34364150 None:intergenic 40.0%
!! TCTCTTGAGCTTGTTACACA+AGG - chr5_4:34364134-34364153 Msa0848730:intron 40.0%
ACGTGTAAGCAACAGTTGTT+TGG - chr5_4:34364297-34364316 Msa0848730:intron 40.0%
GAACAGACATCAACTGATGA+AGG - chr5_4:34364339-34364358 Msa0848730:intron 40.0%
!!! TGATGAAGGCCTTGTTTTTG+AGG - chr5_4:34364353-34364372 Msa0848730:intron 40.0%
! GACAATGCCCTTTTCTTGAT+AGG + chr5_4:34364387-34364406 None:intergenic 40.0%
TCTTTAGCAGATGAAGGGTT+GGG + chr5_4:34364516-34364535 None:intergenic 40.0%
GTATCAAGCAAGCAGACAAT+AGG + chr5_4:34364775-34364794 None:intergenic 40.0%
GTAGAAGTGAAGAGAAATGG+TGG - chr5_4:34364901-34364920 Msa0848730:intron 40.0%
ACTGAACCAGTTGTTGAAAG+CGG - chr5_4:34365030-34365049 Msa0848730:intron 40.0%
GGCAACAAAAGAGACGATAA+AGG - chr5_4:34365051-34365070 Msa0848730:intron 40.0%
AAAGAGACGATAAAGGTCAG+AGG - chr5_4:34365058-34365077 Msa0848730:intron 40.0%
ATTAGTTCCCGGATCTGTTT+CGG + chr5_4:34365260-34365279 None:intergenic 40.0%
!! CATCGACTTTCATTAGTTCC+CGG + chr5_4:34365271-34365290 None:intergenic 40.0%
!!! TTTTGACTTCATCGTTGGTG+AGG + chr5_4:34365295-34365314 None:intergenic 40.0%
TCTCAGACCAAGATTATACG+TGG - chr5_4:34365382-34365401 Msa0848730:CDS 40.0%
TTAGTAAACCCTGCAATCCA+CGG - chr5_4:34365405-34365424 Msa0848730:CDS 40.0%
! GTAAAAATCCGTGGATTGCA+GGG + chr5_4:34365416-34365435 None:intergenic 40.0%
TCATCTACGGTAAAAATCCG+TGG + chr5_4:34365425-34365444 None:intergenic 40.0%
AGTCGCAATTCTGATAGTCA+AGG + chr5_4:34365540-34365559 None:intergenic 40.0%
ACAGCTCCTATGTTCTTAGT+AGG - chr5_4:34365713-34365732 Msa0848730:CDS 40.0%
CAGCTCCTATGTTCTTAGTA+GGG - chr5_4:34365714-34365733 Msa0848730:CDS 40.0%
!! TTCTCCTGACACTGTTGTTT+TGG + chr5_4:34365780-34365799 None:intergenic 40.0%
ACAGGTGCATAAATTCCTGT+TGG + chr5_4:34365821-34365840 None:intergenic 40.0%
AACAGGAATTTATGCACCTG+TGG - chr5_4:34365820-34365839 Msa0848730:five_prime_UTR 40.0%
TGTATGAGTGGAACATGATG+AGG + chr5_4:34365960-34365979 None:intergenic 40.0%
TGAAGTTGTAGGTGTATGAG+TGG + chr5_4:34365972-34365991 None:intergenic 40.0%
ACAGTTTGAGGAAGAGGGTA+AGG + chr5_4:34363962-34363981 None:intergenic 45.0%
GGGAAACAGTTTGAGGAAGA+GGG + chr5_4:34363967-34363986 None:intergenic 45.0%
TGTTGAGGGGAAACAGTTTG+AGG + chr5_4:34363974-34363993 None:intergenic 45.0%
GAGAAAGAGGAAGGTCTCTA+GGG + chr5_4:34364118-34364137 None:intergenic 45.0%
AGAGAAAGAGGAAGGTCTCT+AGG + chr5_4:34364119-34364138 None:intergenic 45.0%
CAAGCTCAAGAGAAAGAGGA+AGG + chr5_4:34364127-34364146 None:intergenic 45.0%
! CTGTTGCTTACACGTTTCGA+TGG + chr5_4:34364292-34364311 None:intergenic 45.0%
! TGGAACACAATCGGAGTGTT+CGG - chr5_4:34364317-34364336 Msa0848730:intron 45.0%
GGCTAAGATCTGTTCAGTTG+TGG - chr5_4:34364487-34364506 Msa0848730:CDS 45.0%
CTCTTTAGCAGATGAAGGGT+TGG + chr5_4:34364517-34364536 None:intergenic 45.0%
CAACCCTTCATCTGCTAAAG+AGG - chr5_4:34364515-34364534 Msa0848730:intron 45.0%
TTGGTTTCGCCATCCAGAAA+CGG + chr5_4:34364640-34364659 None:intergenic 45.0%
CAAGCAGACAATAGGCTTGA+TGG + chr5_4:34364767-34364786 None:intergenic 45.0%
!! TGTTTGTTCAGGAAGTGCCT+AGG - chr5_4:34364866-34364885 Msa0848730:CDS 45.0%
GCGATTTCCTCTTTGTGGAA+TGG + chr5_4:34364937-34364956 None:intergenic 45.0%
GAACTTGTAGCAGGTACTTG+AGG + chr5_4:34365009-34365028 None:intergenic 45.0%
GGTTCAGTAGAACTTGTAGC+AGG + chr5_4:34365018-34365037 None:intergenic 45.0%
!! TTGTTGCCGCTTTCAACAAC+TGG + chr5_4:34365039-34365058 None:intergenic 45.0%
TTGCATGCCCTTCAACAACT+TGG - chr5_4:34365123-34365142 Msa0848730:intron 45.0%
TGAACCGCCAAGTTGTTGAA+GGG + chr5_4:34365133-34365152 None:intergenic 45.0%
TTGAACCGCCAAGTTGTTGA+AGG + chr5_4:34365134-34365153 None:intergenic 45.0%
CGGGAACTAATGAAAGTCGA+TGG - chr5_4:34365269-34365288 Msa0848730:CDS 45.0%
! GGTAAAAATCCGTGGATTGC+AGG + chr5_4:34365417-34365436 None:intergenic 45.0%
AATTTCGTCTGCACACGAGA+AGG - chr5_4:34365657-34365676 Msa0848730:CDS 45.0%
CTGCACCATATTCTTGTGGT+TGG + chr5_4:34365751-34365770 None:intergenic 45.0%
GCTACTGCACCATATTCTTG+TGG + chr5_4:34365755-34365774 None:intergenic 45.0%
!!! TCCTGACACTGTTGTTTTGG+TGG + chr5_4:34365777-34365796 None:intergenic 45.0%
ACCACAGTTACTACTCCAAC+AGG - chr5_4:34365803-34365822 Msa0848730:five_prime_UTR 45.0%
TCCTGTTGGAGTAGTAACTG+TGG + chr5_4:34365807-34365826 None:intergenic 45.0%
ACAGTTTGAGGAAGAGGGTA+AGG + chr5_4:34363962-34363981 None:intergenic 45.0%
GGGAAACAGTTTGAGGAAGA+GGG + chr5_4:34363967-34363986 None:intergenic 45.0%
TGTTGAGGGGAAACAGTTTG+AGG + chr5_4:34363974-34363993 None:intergenic 45.0%
GAGAAAGAGGAAGGTCTCTA+GGG + chr5_4:34364118-34364137 None:intergenic 45.0%
AGAGAAAGAGGAAGGTCTCT+AGG + chr5_4:34364119-34364138 None:intergenic 45.0%
CAAGCTCAAGAGAAAGAGGA+AGG + chr5_4:34364127-34364146 None:intergenic 45.0%
! CTGTTGCTTACACGTTTCGA+TGG + chr5_4:34364292-34364311 None:intergenic 45.0%
! TGGAACACAATCGGAGTGTT+CGG - chr5_4:34364317-34364336 Msa0848730:intron 45.0%
GGCTAAGATCTGTTCAGTTG+TGG - chr5_4:34364487-34364506 Msa0848730:CDS 45.0%
CTCTTTAGCAGATGAAGGGT+TGG + chr5_4:34364517-34364536 None:intergenic 45.0%
CAACCCTTCATCTGCTAAAG+AGG - chr5_4:34364515-34364534 Msa0848730:intron 45.0%
TTGGTTTCGCCATCCAGAAA+CGG + chr5_4:34364640-34364659 None:intergenic 45.0%
CAAGCAGACAATAGGCTTGA+TGG + chr5_4:34364767-34364786 None:intergenic 45.0%
!! TGTTTGTTCAGGAAGTGCCT+AGG - chr5_4:34364866-34364885 Msa0848730:CDS 45.0%
GCGATTTCCTCTTTGTGGAA+TGG + chr5_4:34364937-34364956 None:intergenic 45.0%
GAACTTGTAGCAGGTACTTG+AGG + chr5_4:34365009-34365028 None:intergenic 45.0%
GGTTCAGTAGAACTTGTAGC+AGG + chr5_4:34365018-34365037 None:intergenic 45.0%
!! TTGTTGCCGCTTTCAACAAC+TGG + chr5_4:34365039-34365058 None:intergenic 45.0%
TTGCATGCCCTTCAACAACT+TGG - chr5_4:34365123-34365142 Msa0848730:intron 45.0%
TGAACCGCCAAGTTGTTGAA+GGG + chr5_4:34365133-34365152 None:intergenic 45.0%
TTGAACCGCCAAGTTGTTGA+AGG + chr5_4:34365134-34365153 None:intergenic 45.0%
CGGGAACTAATGAAAGTCGA+TGG - chr5_4:34365269-34365288 Msa0848730:CDS 45.0%
! GGTAAAAATCCGTGGATTGC+AGG + chr5_4:34365417-34365436 None:intergenic 45.0%
AATTTCGTCTGCACACGAGA+AGG - chr5_4:34365657-34365676 Msa0848730:CDS 45.0%
CTGCACCATATTCTTGTGGT+TGG + chr5_4:34365751-34365770 None:intergenic 45.0%
GCTACTGCACCATATTCTTG+TGG + chr5_4:34365755-34365774 None:intergenic 45.0%
!!! TCCTGACACTGTTGTTTTGG+TGG + chr5_4:34365777-34365796 None:intergenic 45.0%
ACCACAGTTACTACTCCAAC+AGG - chr5_4:34365803-34365822 Msa0848730:five_prime_UTR 45.0%
TCCTGTTGGAGTAGTAACTG+TGG + chr5_4:34365807-34365826 None:intergenic 45.0%
GGGGAAACAGTTTGAGGAAG+AGG + chr5_4:34363968-34363987 None:intergenic 50.0%
! GAAGGTCTCTAGGGAAAACC+TGG + chr5_4:34364109-34364128 None:intergenic 50.0%
!! GCTTGATGGATTGAGTGACG+CGG + chr5_4:34364753-34364772 None:intergenic 50.0%
CAGCAGCGATTTCCTCTTTG+TGG + chr5_4:34364942-34364961 None:intergenic 50.0%
CATGCCCTTCAACAACTTGG+CGG - chr5_4:34365126-34365145 Msa0848730:intron 50.0%
GCCACCAAAACAACAGTGTC+AGG - chr5_4:34365773-34365792 Msa0848730:five_prime_UTR 50.0%
GATGAAGGATGTGTAGCCAC+AGG + chr5_4:34365839-34365858 None:intergenic 50.0%
AGTGGAACATGATGAGGCAG+GGG + chr5_4:34365954-34365973 None:intergenic 50.0%
GAGTGGAACATGATGAGGCA+GGG + chr5_4:34365955-34365974 None:intergenic 50.0%
TGAGTGGAACATGATGAGGC+AGG + chr5_4:34365956-34365975 None:intergenic 50.0%
GGGGAAACAGTTTGAGGAAG+AGG + chr5_4:34363968-34363987 None:intergenic 50.0%
! GAAGGTCTCTAGGGAAAACC+TGG + chr5_4:34364109-34364128 None:intergenic 50.0%
!! GCTTGATGGATTGAGTGACG+CGG + chr5_4:34364753-34364772 None:intergenic 50.0%
CAGCAGCGATTTCCTCTTTG+TGG + chr5_4:34364942-34364961 None:intergenic 50.0%
CATGCCCTTCAACAACTTGG+CGG - chr5_4:34365126-34365145 Msa0848730:intron 50.0%
GCCACCAAAACAACAGTGTC+AGG - chr5_4:34365773-34365792 Msa0848730:five_prime_UTR 50.0%
GATGAAGGATGTGTAGCCAC+AGG + chr5_4:34365839-34365858 None:intergenic 50.0%
AGTGGAACATGATGAGGCAG+GGG + chr5_4:34365954-34365973 None:intergenic 50.0%
GAGTGGAACATGATGAGGCA+GGG + chr5_4:34365955-34365974 None:intergenic 50.0%
TGAGTGGAACATGATGAGGC+AGG + chr5_4:34365956-34365975 None:intergenic 50.0%
! GTTGTGCCGCTAACCGTTTC+TGG - chr5_4:34364624-34364643 Msa0848730:CDS 55.0%
! TGCCGCTAACCGTTTCTGGA+TGG - chr5_4:34364628-34364647 Msa0848730:CDS 55.0%
CGCCATCCAGAAACGGTTAG+CGG + chr5_4:34364633-34364652 None:intergenic 55.0%
GGTACTTGAGGCGAACTGGT+TGG + chr5_4:34364997-34365016 None:intergenic 55.0%
AGCAGGTACTTGAGGCGAAC+TGG + chr5_4:34365001-34365020 None:intergenic 55.0%
AAGGTCAGAGGAAGCAGCGT+CGG - chr5_4:34365070-34365089 Msa0848730:intron 55.0%
! GTTGTGCCGCTAACCGTTTC+TGG - chr5_4:34364624-34364643 Msa0848730:CDS 55.0%
! TGCCGCTAACCGTTTCTGGA+TGG - chr5_4:34364628-34364647 Msa0848730:CDS 55.0%
CGCCATCCAGAAACGGTTAG+CGG + chr5_4:34364633-34364652 None:intergenic 55.0%
GGTACTTGAGGCGAACTGGT+TGG + chr5_4:34364997-34365016 None:intergenic 55.0%
AGCAGGTACTTGAGGCGAAC+TGG + chr5_4:34365001-34365020 None:intergenic 55.0%
AAGGTCAGAGGAAGCAGCGT+CGG - chr5_4:34365070-34365089 Msa0848730:intron 55.0%
CTGCCACGCCGAAACAGATC+CGG - chr5_4:34365249-34365268 Msa0848730:CDS 60.0%
TGCCACGCCGAAACAGATCC+GGG - chr5_4:34365250-34365269 Msa0848730:CDS 60.0%
TTCCCGGATCTGTTTCGGCG+TGG + chr5_4:34365255-34365274 None:intergenic 60.0%
CTGCCACGCCGAAACAGATC+CGG - chr5_4:34365249-34365268 Msa0848730:CDS 60.0%
TGCCACGCCGAAACAGATCC+GGG - chr5_4:34365250-34365269 Msa0848730:CDS 60.0%
TTCCCGGATCTGTTTCGGCG+TGG + chr5_4:34365255-34365274 None:intergenic 60.0%
!! AGAGGAAGCAGCGTCGGTGC+TGG - chr5_4:34365076-34365095 Msa0848730:intron 65.0%
!! AGAGGAAGCAGCGTCGGTGC+TGG - chr5_4:34365076-34365095 Msa0848730:intron 65.0%
!! GCAGCGTCGGTGCTGGTCAC+AGG - chr5_4:34365083-34365102 Msa0848730:intron 70.0%
!! GCAGCGTCGGTGCTGGTCAC+AGG - chr5_4:34365083-34365102 Msa0848730:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 34363775 34366000 34363775 ID=Msa0848730;Name=Msa0848730
chr5_4 mRNA 34363775 34366000 34363775 ID=Msa0848730-mRNA-1;Parent=Msa0848730;Name=Msa0848730-mRNA-1;_AED=0.08;_eAED=0.08;_QI=239|1|0.8|1|1|1|5|0|363
chr5_4 exon 34363775 34364119 34363775 ID=Msa0848730-mRNA-1:exon:11654;Parent=Msa0848730-mRNA-1
chr5_4 exon 34364450 34364526 34364450 ID=Msa0848730-mRNA-1:exon:11653;Parent=Msa0848730-mRNA-1
chr5_4 exon 34364619 34364898 34364619 ID=Msa0848730-mRNA-1:exon:11652;Parent=Msa0848730-mRNA-1
chr5_4 exon 34365239 34365486 34365239 ID=Msa0848730-mRNA-1:exon:11651;Parent=Msa0848730-mRNA-1
chr5_4 exon 34365620 34366000 34365620 ID=Msa0848730-mRNA-1:exon:11650;Parent=Msa0848730-mRNA-1
chr5_4 five_prime_UTR 34365762 34366000 34365762 ID=Msa0848730-mRNA-1:five_prime_utr;Parent=Msa0848730-mRNA-1
chr5_4 CDS 34365620 34365761 34365620 ID=Msa0848730-mRNA-1:cds;Parent=Msa0848730-mRNA-1
chr5_4 CDS 34365239 34365486 34365239 ID=Msa0848730-mRNA-1:cds;Parent=Msa0848730-mRNA-1
chr5_4 CDS 34364619 34364898 34364619 ID=Msa0848730-mRNA-1:cds;Parent=Msa0848730-mRNA-1
chr5_4 CDS 34364450 34364526 34364450 ID=Msa0848730-mRNA-1:cds;Parent=Msa0848730-mRNA-1
chr5_4 CDS 34363775 34364119 34363775 ID=Msa0848730-mRNA-1:cds;Parent=Msa0848730-mRNA-1
Gene Sequence

>Msa0848730

ATGGTTTCAATGCAATTCGATGATAAAATGCACTCGCATAAAATGGAATTTCGTGACTATATCCTAGCATTGGAAGAAGAAAAGAAGAAAATCCAGGTTTTCCCTAGAGACCTTCCTCTTTCTCTTGAGCTTGTTACACAAGCCATCGAAACGTGTAAGCAACAGTTGTTTGGAACACAATCGGAGTGTTCGGAACAGACATCAACTGATGAAGGCCTTGTTTTTGAGGAGTTTATTCCTATCAAGAAAAGGGCATTGTCCCCCAATTGCGATGAAAATGATGAGGAAGATGATGATGATAATGATGAGCAACATTCATCACATAAGATGAAATCTGATTGGCTAAGATCTGTTCAGTTGTGGAATCCCAACCCTTCATCTGCTAAAGAGGAAGTGCCTAGGAAAACAAATGTTGTAGAAGTGAAGAGAAATGGTGGAGCATTTCAACCATTCCACAAAGAGGAAATCGCTGCTGAAAAAGATAATGCGTTAGAAAGTGATAAAGCACCAACCAGTTCGCCTCAAGTACCTGCTACAAGTTCTACTGAACCAGTTGTTGAAAGCGGCAACAAAAGAGACGATAAAGGTCAGAGGAAGCAGCGTCGGTGCTGGTCACAGGAATTGCACAAACGCTTCTTGCATGCCCTTCAACAACTTGGCGGTTCAAATTCTGCCACGCCGAAACAGATCCGGGAACTAATGAAAGTCGATGGCCTCACCAACGATGAAGTCAAAAGTCATTTGCAGAAATTTCGTCTGCACACGAGAAGGAGCCCAATAATTCACAACAATTCTAATTCACATACAGCTCCTATGTTCTTAGTAGGGAACATTTATGTCCAACCACAAGAATATGGTGCAGTAGCCACCAAAACAACAGTGTCAGGAGAATTGACCACAGTTACTACTCCAACAGGAATTTATGCACCTGTGGCTACACATCCTTCATCTACAACAACAGTTATAAAACCAAAGTTTAAGAAAAAATTTGAGTTGAGTGAGAATTCACATTCTGTAGAAAGAATTGTTGCTCATTCTAACTCCCCTGCCTCATCATGTTCCACTCATACACCTACAACTTCAAGATGCTGA
Protein sequence

>Msa0848730

MVSMQFDDKMHSHKMEFRDYILALEEEKKKIQVFPRDLPLSLELVTQAIETCKQQLFGTQSECSEQTSTDEGLVFEEFIPIKKRALSPNCDENDEEDDDDNDEQHSSHKMKSDWLRSVQLWNPNPSSAKEEVPRKTNVVEVKRNGGAFQPFHKEEIAAEKDNALESDKAPTSSPQVPATSSTEPVVESGNKRDDKGQRKQRRCWSQELHKRFLHALQQLGGSNSATPKQIRELMKVDGLTNDEVKSHLQKFRLHTRRSPIIHNNSNSHTAPMFLVGNIYVQPQEYGAVATKTTVSGELTTVTTPTGIYAPVATHPSSTTTVIKPKFKKKFELSENSHSVERIVAHSNSPASSCSTHTPTTSRC*