Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0809020 | G7K8W6 | 98.182 | 110 | 2 | 0 | 1 | 110 | 1 | 110 | 2.83e-70 | 214 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0730610 | Msa0809020 | 0.840579 | 7.985063e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0809020 | MtrunA17_Chr5g0424191 | 92.727 | 110 | 8 | 0 | 1 | 110 | 7 | 116 | 6.05e-70 | 204 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0809020 | AT4G08230.1 | 72.566 | 113 | 28 | 1 | 1 | 110 | 1 | 113 | 5.57e-36 | 119 |
| Msa0809020 | AT4G08230.2 | 73.611 | 72 | 16 | 1 | 42 | 110 | 1 | 72 | 1.04e-11 | 56.2 |
Find 50 sgRNAs with CRISPR-Local
Find 327 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGGTGGTGGTGGCGGTGG+TGG | 0.245455 | 5_3:+34555078 | Msa0809020:CDS |
| TCTTACCAGCAGAACCTTTC+CGG | 0.270030 | 5_3:-34555035 | None:intergenic |
| GACCATATGGTGGCGGTCCT+CGG | 0.303454 | 5_3:+34555103 | Msa0809020:CDS |
| GTGGTGGTGGTGGCGGTGGT+GGG | 0.326929 | 5_3:+34555079 | Msa0809020:CDS |
| GGTGGTGGTGGCGGTGGTGG+GGG | 0.330183 | 5_3:+34555081 | Msa0809020:CDS |
| ACCATATGGTGGCGGTCCTC+GGG | 0.331631 | 5_3:+34555104 | Msa0809020:CDS |
| TGGTGGTGGTGGCGGTGGTG+GGG | 0.349873 | 5_3:+34555080 | Msa0809020:CDS |
| GGAGGTCCTGGTGGTGGTGG+TGG | 0.353019 | 5_3:+34555069 | Msa0809020:CDS |
| TCATAGGCTATTTAAATAGT+AGG | 0.359573 | 5_3:+34555546 | Msa0809020:three_prime_UTR |
| TGGGCCATTGTCAACTTCAT+AGG | 0.363056 | 5_3:+34554866 | Msa0809020:CDS |
| CGCTCTCTATATTACAGTTA+TGG | 0.374914 | 5_3:-34551311 | None:intergenic |
| GGTTCTGCTGGTAAGAAATA+TGG | 0.392186 | 5_3:+34555042 | Msa0809020:CDS |
| GGTGGAGGTCCTGGTGGTGG+TGG | 0.408303 | 5_3:+34555066 | Msa0809020:CDS |
| ACCAACAAATATTGACAAAT+CGG | 0.415272 | 5_3:-34555349 | None:intergenic |
| TCCGATTTGTCAATATTTGT+TGG | 0.423463 | 5_3:+34555348 | Msa0809020:three_prime_UTR |
| TTAAATCAAAGCGATCAATA+TGG | 0.429926 | 5_3:+34554816 | Msa0809020:CDS |
| AAATATGGCGGTGGAGGTCC+TGG | 0.450929 | 5_3:+34555057 | Msa0809020:CDS |
| CCCCGAGGACCGCCACCATA+TGG | 0.456053 | 5_3:-34555105 | None:intergenic |
| GGCGGTGGAGGTCCTGGTGG+TGG | 0.456240 | 5_3:+34555063 | Msa0809020:CDS |
| CCACCGCCACCACCACCACC+AGG | 0.481874 | 5_3:-34555075 | None:intergenic |
| ACCCATGTGCGCATATAGCT+TGG | 0.487487 | 5_3:-34555441 | None:intergenic |
| GCCTACCGGAAAGGTTCTGC+TGG | 0.490954 | 5_3:+34555030 | Msa0809020:CDS |
| ATTGTCATGCTTAATCTCAT+AGG | 0.494130 | 5_3:+34555530 | Msa0809020:three_prime_UTR |
| GGTAAGAAATATGGCGGTGG+AGG | 0.533644 | 5_3:+34555051 | Msa0809020:CDS |
| CCTGCATGCGGCTCATGCTG+TGG | 0.545668 | 5_3:+34555309 | Msa0809020:CDS |
| CCACAGCATGAGCCGCATGC+AGG | 0.547108 | 5_3:-34555309 | None:intergenic |
| GGTGGCCTTGACAATGTTCG+TGG | 0.550925 | 5_3:+34555138 | Msa0809020:CDS |
| TTCCAAGCTATATGCGCACA+TGG | 0.558112 | 5_3:+34555439 | Msa0809020:three_prime_UTR |
| ACCTCGTTCAACGTAAGCCA+TGG | 0.571060 | 5_3:-34551389 | None:intergenic |
| CCATATGGTGGCGGTCCTCG+GGG | 0.575277 | 5_3:+34555105 | Msa0809020:CDS |
| AAATCAGATGCCTACCGGAA+AGG | 0.583765 | 5_3:+34555021 | Msa0809020:CDS |
| TATGGCGGTGGAGGTCCTGG+TGG | 0.603077 | 5_3:+34555060 | Msa0809020:CDS |
| TCAGGTTCATTGCCTGCATG+CGG | 0.608267 | 5_3:+34555297 | Msa0809020:intron |
| GGTCCTCGGGGACCTCCTCG+TGG | 0.609583 | 5_3:+34555117 | Msa0809020:CDS |
| GCTGGTAAGAAATATGGCGG+TGG | 0.624855 | 5_3:+34555048 | Msa0809020:CDS |
| TCCATGGCTTACGTTGAACG+AGG | 0.632346 | 5_3:+34551388 | Msa0809020:exon |
| ACTCACTATGATCACGTCCA+CGG | 0.649901 | 5_3:-34555173 | None:intergenic |
| ACCAGCAGAACCTTTCCGGT+AGG | 0.651291 | 5_3:-34555031 | None:intergenic |
| CCTCGGGGACCTCCTCGTGG+TGG | 0.657075 | 5_3:+34555120 | Msa0809020:CDS |
| CCACCACGAGGAGGTCCCCG+AGG | 0.664737 | 5_3:-34555120 | None:intergenic |
| GTGGCCTTGACAATGTTCGT+GGG | 0.667407 | 5_3:+34555139 | Msa0809020:CDS |
| TCCAAGCTATATGCGCACAT+GGG | 0.667669 | 5_3:+34555440 | Msa0809020:three_prime_UTR |
| GTATAAATAAATTAAAATCG+AGG | 0.668769 | 5_3:+34551287 | None:intergenic |
| CACGCCTATGAAGTTGACAA+TGG | 0.673174 | 5_3:-34554870 | None:intergenic |
| CTAGCCCACGAACATTGTCA+AGG | 0.673652 | 5_3:-34555143 | None:intergenic |
| AATCAAAGCGATCAATATGG+CGG | 0.683201 | 5_3:+34554819 | Msa0809020:CDS |
| TTGTCAAGGCCACCACGAGG+AGG | 0.693765 | 5_3:-34555129 | None:intergenic |
| CGTGGGCTAGATAGTATCCG+TGG | 0.707220 | 5_3:+34555156 | Msa0809020:CDS |
| TCTGCTGGTAAGAAATATGG+CGG | 0.710033 | 5_3:+34555045 | Msa0809020:CDS |
| ACATTGTCAAGGCCACCACG+AGG | 0.771312 | 5_3:-34555132 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGAATTGAAAAAAAAAA+AGG | - | chr5_3:34551352-34551371 | None:intergenic | 10.0% |
| !!! | TATAGATTTTAATTTTATGA+TGG | + | chr5_3:34554940-34554959 | Msa0809020:intron | 10.0% |
| !! | TTCTTTAAATATAAGATTGT+CGG | - | chr5_3:34551573-34551592 | None:intergenic | 15.0% |
| !! | TGATATCAAATTTAAAAGTT+TGG | - | chr5_3:34552317-34552336 | None:intergenic | 15.0% |
| !! | TAAATATTAAGATAATTGTG+TGG | + | chr5_3:34552990-34553009 | Msa0809020:intron | 15.0% |
| !! | AAATATTAAGATAATTGTGT+GGG | + | chr5_3:34552991-34553010 | Msa0809020:intron | 15.0% |
| !!! | TTGATATTAGGTTTTATATT+GGG | - | chr5_3:34553905-34553924 | None:intergenic | 15.0% |
| !!! | TTTGATATTAGGTTTTATAT+TGG | - | chr5_3:34553906-34553925 | None:intergenic | 15.0% |
| !! | ATTAAACATATTACCAAATA+TGG | - | chr5_3:34555264-34555283 | None:intergenic | 15.0% |
| !!! | ATTTATGATTATCACTGATT+AGG | + | chr5_3:34551449-34551468 | Msa0809020:intron | 20.0% |
| !!! | TTTATGATTATCACTGATTA+GGG | + | chr5_3:34551450-34551469 | Msa0809020:intron | 20.0% |
| !! | TTTAGTGTAATTATATGTGT+CGG | + | chr5_3:34551680-34551699 | Msa0809020:intron | 20.0% |
| !! | ATTGTTAATTACATTAAAGC+TGG | + | chr5_3:34551823-34551842 | Msa0809020:intron | 20.0% |
| !!! | ATTTTGACTTAAAATGGTTA+TGG | + | chr5_3:34551946-34551965 | Msa0809020:intron | 20.0% |
| !!! | TTTTTAATAATGAAGGAACT+TGG | + | chr5_3:34552144-34552163 | Msa0809020:intron | 20.0% |
| !! | TATCAAATTTAAAAGTTTGG+AGG | - | chr5_3:34552314-34552333 | None:intergenic | 20.0% |
| !! | TTGATATCAATTTATCAAAC+AGG | + | chr5_3:34552328-34552347 | Msa0809020:intron | 20.0% |
| !! | TGATATCAATTTATCAAACA+GGG | + | chr5_3:34552329-34552348 | Msa0809020:intron | 20.0% |
| !!! | TCAATTTTCTATTTCTATCT+AGG | - | chr5_3:34552516-34552535 | None:intergenic | 20.0% |
| !! | ATAAATTGGATAAACTGATA+AGG | - | chr5_3:34552658-34552677 | None:intergenic | 20.0% |
| !!! | TTATTTTGTTACTTTGAAAG+GGG | - | chr5_3:34552768-34552787 | None:intergenic | 20.0% |
| !!! | GTTATTTTGTTACTTTGAAA+GGG | - | chr5_3:34552769-34552788 | None:intergenic | 20.0% |
| !! | AACTATTAAGAAAGATGAAT+TGG | - | chr5_3:34553606-34553625 | None:intergenic | 20.0% |
| !!! | TTTTCTATGAAAAGTGATTT+GGG | + | chr5_3:34553758-34553777 | Msa0809020:intron | 20.0% |
| !! | GTGTCTAATAATTTGATATT+AGG | - | chr5_3:34553917-34553936 | None:intergenic | 20.0% |
| !! | ATTGTAAGAATACATCAATT+TGG | - | chr5_3:34554977-34554996 | None:intergenic | 20.0% |
| !! | TCTAAATAACCAAAATATCA+AGG | - | chr5_3:34555215-34555234 | None:intergenic | 20.0% |
| !! | AGGTTTTGCTTATTTGATTA+TGG | + | chr5_3:34551475-34551494 | Msa0809020:intron | 25.0% |
| !! | AATATTGTGAATTTGAAGCA+CGG | + | chr5_3:34551600-34551619 | Msa0809020:intron | 25.0% |
| ! | TCTCAAATTATTAACAGTGT+CGG | - | chr5_3:34551649-34551668 | None:intergenic | 25.0% |
| ! | AGTCAGTTGTTAATAATCAT+AGG | + | chr5_3:34551862-34551881 | Msa0809020:intron | 25.0% |
| !!! | GACGTTTAACTAATTTGTTT+CGG | - | chr5_3:34551899-34551918 | None:intergenic | 25.0% |
| !!! | TGCTCAATTTTGACTTAAAA+TGG | + | chr5_3:34551940-34551959 | Msa0809020:intron | 25.0% |
| !! | AAGGTGGTTTTTAATAATGA+AGG | + | chr5_3:34552137-34552156 | Msa0809020:intron | 25.0% |
| !!! | AGTAAGTTATTTGGTGTTAT+TGG | + | chr5_3:34552167-34552186 | Msa0809020:intron | 25.0% |
| ! | GGAGATTAACAAAAAGAAAT+TGG | - | chr5_3:34552225-34552244 | None:intergenic | 25.0% |
| !! | ATTTCTTTTTGTTAATCTCC+AGG | + | chr5_3:34552225-34552244 | Msa0809020:intron | 25.0% |
| !! | TTTCTTTTTGTTAATCTCCA+GGG | + | chr5_3:34552226-34552245 | Msa0809020:intron | 25.0% |
| !!! | TGTTCAAGTCATTTTCTTAA+AGG | + | chr5_3:34552376-34552395 | Msa0809020:intron | 25.0% |
| !!! | GTTCAAGTCATTTTCTTAAA+GGG | + | chr5_3:34552377-34552396 | Msa0809020:intron | 25.0% |
| ! | GTATTAATATTACCGAATAC+CGG | + | chr5_3:34552441-34552460 | Msa0809020:intron | 25.0% |
| ! | TTGAATGAATGATTGTGAAT+AGG | + | chr5_3:34552567-34552586 | Msa0809020:intron | 25.0% |
| !! | TAACGAAGTGAGATTAATTT+TGG | - | chr5_3:34552600-34552619 | None:intergenic | 25.0% |
| ! | AGAGTTATTAGCATTAGTTA+GGG | - | chr5_3:34552713-34552732 | None:intergenic | 25.0% |
| ! | TAGAGTTATTAGCATTAGTT+AGG | - | chr5_3:34552714-34552733 | None:intergenic | 25.0% |
| !!! | GGTTATTTTGTTACTTTGAA+AGG | - | chr5_3:34552770-34552789 | None:intergenic | 25.0% |
| ! | TAACAAAATAACCTTGTTCT+CGG | + | chr5_3:34552777-34552796 | Msa0809020:intron | 25.0% |
| ! | AACTGAAATTATTGATCACA+TGG | - | chr5_3:34552932-34552951 | None:intergenic | 25.0% |
| ! | ATGTGATCAATAATTTCAGT+TGG | + | chr5_3:34552931-34552950 | Msa0809020:intron | 25.0% |
| ! | AGATTCACGATAGAAAAAAT+GGG | - | chr5_3:34552971-34552990 | None:intergenic | 25.0% |
| ! | TAGATTCACGATAGAAAAAA+TGG | - | chr5_3:34552972-34552991 | None:intergenic | 25.0% |
| ! | CTATGGATGTGTTATATAAA+TGG | + | chr5_3:34553106-34553125 | Msa0809020:intron | 25.0% |
| ! | TGTAGACATAAAGTTTAAAC+AGG | - | chr5_3:34553230-34553249 | None:intergenic | 25.0% |
| ! | TGATATATGGTAGAACATTA+TGG | - | chr5_3:34553574-34553593 | None:intergenic | 25.0% |
| ! | TTGGTTATAGGTATGATATA+TGG | - | chr5_3:34553587-34553606 | None:intergenic | 25.0% |
| ! | AAGAAAGATGAATTGGTTAT+AGG | - | chr5_3:34553599-34553618 | None:intergenic | 25.0% |
| !! | ACTTTTCATAGAAAAGATAG+TGG | - | chr5_3:34553753-34553772 | None:intergenic | 25.0% |
| !! | CTTTTCTATGAAAAGTGATT+TGG | + | chr5_3:34553757-34553776 | Msa0809020:intron | 25.0% |
| ! | CTTAAAACAATGATGAAACA+TGG | - | chr5_3:34554005-34554024 | None:intergenic | 25.0% |
| !!! | TTTTTGAGTGCTTATTTAGT+CGG | + | chr5_3:34554164-34554183 | Msa0809020:intron | 25.0% |
| ! | GAATTCAACATTACATAGAA+AGG | - | chr5_3:34554298-34554317 | None:intergenic | 25.0% |
| ! | TGTAATGTTGAATTCAGATT+TGG | + | chr5_3:34554303-34554322 | Msa0809020:intron | 25.0% |
| ! | ACATTGCAAAATGATTAATG+TGG | + | chr5_3:34554771-34554790 | Msa0809020:intron | 25.0% |
| ! | CATTGCAAAATGATTAATGT+GGG | + | chr5_3:34554772-34554791 | Msa0809020:intron | 25.0% |
| ! | TTAAATCAAAGCGATCAATA+TGG | + | chr5_3:34554816-34554835 | Msa0809020:CDS | 25.0% |
| !! | ATCTGATTTTTCCATCTAAT+GGG | - | chr5_3:34555010-34555029 | None:intergenic | 25.0% |
| !! | TTCTATATGCCTTGATATTT+TGG | + | chr5_3:34555203-34555222 | Msa0809020:intron | 25.0% |
| ! | ACCAACAAATATTGACAAAT+CGG | - | chr5_3:34555352-34555371 | None:intergenic | 25.0% |
| !! | ATTTGTATGACTTTTAGACA+CGG | - | chr5_3:34555503-34555522 | None:intergenic | 25.0% |
| ! | TCATAGGCTATTTAAATAGT+AGG | + | chr5_3:34555546-34555565 | Msa0809020:three_prime_UTR | 25.0% |
| GAATTGAAAGAATTGAGAAG+AGG | - | chr5_3:34551420-34551439 | None:intergenic | 30.0% | |
| ! | TTTTCCAGTTTTCTATGTTG+AGG | + | chr5_3:34551749-34551768 | Msa0809020:intron | 30.0% |
| TGACTTAAAATGGTTATGGT+TGG | + | chr5_3:34551950-34551969 | Msa0809020:intron | 30.0% | |
| TTAAAATGGTTATGGTTGGT+TGG | + | chr5_3:34551954-34551973 | Msa0809020:intron | 30.0% | |
| !! | GTTGGTGTTTCCATTTTTAA+CGG | + | chr5_3:34551972-34551991 | Msa0809020:intron | 30.0% |
| !! | ATGTTTTAAATCTCTCTCTG+AGG | + | chr5_3:34552054-34552073 | Msa0809020:intron | 30.0% |
| !! | TCGTTGTTTTCGATTACTTT+AGG | + | chr5_3:34552086-34552105 | Msa0809020:intron | 30.0% |
| CACAAATACTACCATTACAT+CGG | - | chr5_3:34552113-34552132 | None:intergenic | 30.0% | |
| GATGTAATGGTAGTATTTGT+GGG | + | chr5_3:34552112-34552131 | Msa0809020:intron | 30.0% | |
| ATGTAATGGTAGTATTTGTG+GGG | + | chr5_3:34552113-34552132 | Msa0809020:intron | 30.0% | |
| ATCAATTTATCAAACAGGGT+AGG | + | chr5_3:34552333-34552352 | Msa0809020:intron | 30.0% | |
| ACACTCTTAATAGATGTACT+AGG | + | chr5_3:34552401-34552420 | Msa0809020:intron | 30.0% | |
| CACTCTTAATAGATGTACTA+GGG | + | chr5_3:34552402-34552421 | Msa0809020:intron | 30.0% | |
| CTGCAAAAAATAATACTGTG+AGG | + | chr5_3:34552488-34552507 | Msa0809020:intron | 30.0% | |
| AGGGAATGTCATGTATAAAT+TGG | - | chr5_3:34552672-34552691 | None:intergenic | 30.0% | |
| AACAAAATAACCTTGTTCTC+GGG | + | chr5_3:34552778-34552797 | Msa0809020:intron | 30.0% | |
| ! | TTTTCCTATTTCCATAAGCT+TGG | + | chr5_3:34552905-34552924 | Msa0809020:intron | 30.0% |
| GATTCACGATAGAAAAAATG+GGG | - | chr5_3:34552970-34552989 | None:intergenic | 30.0% | |
| AACACATCCATAGATGATTT+GGG | - | chr5_3:34553099-34553118 | None:intergenic | 30.0% | |
| TAACACATCCATAGATGATT+TGG | - | chr5_3:34553100-34553119 | None:intergenic | 30.0% | |
| ACGAACAAAGTTCTTGAAAT+AGG | - | chr5_3:34553271-34553290 | None:intergenic | 30.0% | |
| CTTAATAGTTTCTCTCATAG+TGG | + | chr5_3:34553616-34553635 | Msa0809020:intron | 30.0% | |
| AAGACGAATAAATCAGATGA+GGG | - | chr5_3:34553677-34553696 | None:intergenic | 30.0% | |
| TAAGACGAATAAATCAGATG+AGG | - | chr5_3:34553678-34553697 | None:intergenic | 30.0% | |
| GACATATCTTTATCCTACAT+AGG | - | chr5_3:34553815-34553834 | None:intergenic | 30.0% | |
| CAATAACGATGTTATTGAAG+GGG | - | chr5_3:34554074-34554093 | None:intergenic | 30.0% | |
| GCAATAACGATGTTATTGAA+GGG | - | chr5_3:34554075-34554094 | None:intergenic | 30.0% | |
| AGCAATAACGATGTTATTGA+AGG | - | chr5_3:34554076-34554095 | None:intergenic | 30.0% | |
| ! | ATCATTTTCTCACTGTTTTC+CGG | + | chr5_3:34554123-34554142 | Msa0809020:intron | 30.0% |
| AGAGAGAACACAAAAATATC+AGG | - | chr5_3:34554589-34554608 | None:intergenic | 30.0% | |
| AGAAGTTACAATCATTAACG+CGG | - | chr5_3:34554629-34554648 | None:intergenic | 30.0% | |
| ATGATTGTAACTTCTGATCA+TGG | + | chr5_3:34554634-34554653 | Msa0809020:intron | 30.0% | |
| TGTATATACAAGCTTCTCTT+TGG | - | chr5_3:34554741-34554760 | None:intergenic | 30.0% | |
| !!! | AGACAATCACTGATTTTTTC+TGG | + | chr5_3:34554846-34554865 | Msa0809020:CDS | 30.0% |
| !!! | GACAATCACTGATTTTTTCT+GGG | + | chr5_3:34554847-34554866 | Msa0809020:CDS | 30.0% |
| !!! | GTTTTTTGCTACAATGTTCT+CGG | + | chr5_3:34554892-34554911 | Msa0809020:CDS | 30.0% |
| ! | CATCTGATTTTTCCATCTAA+TGG | - | chr5_3:34555011-34555030 | None:intergenic | 30.0% |
| !!! | GCTTTTCTAGTTTCCATATT+TGG | + | chr5_3:34555248-34555267 | Msa0809020:intron | 30.0% |
| TTAATCCCTATTGAACTTTC+AGG | + | chr5_3:34555279-34555298 | Msa0809020:intron | 30.0% | |
| ATGAACCTGAAAGTTCAATA+GGG | - | chr5_3:34555287-34555306 | None:intergenic | 30.0% | |
| AATGAACCTGAAAGTTCAAT+AGG | - | chr5_3:34555288-34555307 | None:intergenic | 30.0% | |
| ! | TCCGATTTGTCAATATTTGT+TGG | + | chr5_3:34555348-34555367 | Msa0809020:three_prime_UTR | 30.0% |
| ATTGTCATGCTTAATCTCAT+AGG | + | chr5_3:34555530-34555549 | Msa0809020:three_prime_UTR | 30.0% | |
| ! | TATGTAAGTTTGTGCGTTTT+TGG | + | chr5_3:34555588-34555607 | Msa0809020:three_prime_UTR | 30.0% |
| TTCGCAACAAAAAAAGATAC+TGG | - | chr5_3:34555622-34555641 | None:intergenic | 30.0% | |
| CGCTCTCTATATTACAGTTA+TGG | - | chr5_3:34551314-34551333 | None:intergenic | 35.0% | |
| ! | GATTATCACTGATTAGGGTT+AGG | + | chr5_3:34551455-34551474 | Msa0809020:intron | 35.0% |
| GTCGGCAACAATTGAAAATT+GGG | - | chr5_3:34551555-34551574 | None:intergenic | 35.0% | |
| TGTCGGCAACAATTGAAAAT+TGG | - | chr5_3:34551556-34551575 | None:intergenic | 35.0% | |
| AAGACCTCAACATAGAAAAC+TGG | - | chr5_3:34551756-34551775 | None:intergenic | 35.0% | |
| TTACTTTAGGTCCGATGTAA+TGG | + | chr5_3:34552099-34552118 | Msa0809020:intron | 35.0% | |
| CGATGTAATGGTAGTATTTG+TGG | + | chr5_3:34552111-34552130 | Msa0809020:intron | 35.0% | |
| TGTAATGGTAGTATTTGTGG+GGG | + | chr5_3:34552114-34552133 | Msa0809020:intron | 35.0% | |
| GGAACTTGGAGTAAGTTATT+TGG | + | chr5_3:34552158-34552177 | Msa0809020:intron | 35.0% | |
| !!! | GGTCTGTCGTTTCAATTTTT+TGG | + | chr5_3:34552199-34552218 | Msa0809020:intron | 35.0% |
| TTAAAAGTTTGGAGGTAAGC+AGG | - | chr5_3:34552306-34552325 | None:intergenic | 35.0% | |
| ! | CGAAGTGAGATTAATTTTGG+AGG | - | chr5_3:34552597-34552616 | None:intergenic | 35.0% |
| GTTATTAGCATTAGTTAGGG+TGG | - | chr5_3:34552710-34552729 | None:intergenic | 35.0% | |
| !!! | TTTTGTTACTTTGAAAGGGG+TGG | - | chr5_3:34552765-34552784 | None:intergenic | 35.0% |
| ACAAAATAACCTTGTTCTCG+GGG | + | chr5_3:34552779-34552798 | Msa0809020:intron | 35.0% | |
| ATCTTCATTCTCAAGCAAAC+TGG | - | chr5_3:34552855-34552874 | None:intergenic | 35.0% | |
| TTGCTTGAGAATGAAGATAG+TGG | + | chr5_3:34552857-34552876 | Msa0809020:intron | 35.0% | |
| GATCAATAATTTCAGTTGGC+AGG | + | chr5_3:34552935-34552954 | Msa0809020:intron | 35.0% | |
| TCTACTTGACCTAATAGATC+TGG | - | chr5_3:34553017-34553036 | None:intergenic | 35.0% | |
| AGAACTGGATTCTGCAAAAT+GGG | - | chr5_3:34553049-34553068 | None:intergenic | 35.0% | |
| AATAGGATTTCTACAGACGT+CGG | - | chr5_3:34553254-34553273 | None:intergenic | 35.0% | |
| TTCCCTAACAGTATACACAT+TGG | + | chr5_3:34553398-34553417 | Msa0809020:intron | 35.0% | |
| TCCCTAACAGTATACACATT+GGG | + | chr5_3:34553399-34553418 | Msa0809020:intron | 35.0% | |
| TCCCAATGTGTATACTGTTA+GGG | - | chr5_3:34553403-34553422 | None:intergenic | 35.0% | |
| ATCCCAATGTGTATACTGTT+AGG | - | chr5_3:34553404-34553423 | None:intergenic | 35.0% | |
| !! | GTCATGTTTTGAGTCACAAA+GGG | - | chr5_3:34553447-34553466 | None:intergenic | 35.0% |
| !! | AGTCATGTTTTGAGTCACAA+AGG | - | chr5_3:34553448-34553467 | None:intergenic | 35.0% |
| CTTTATCCTACATAGGACTT+GGG | - | chr5_3:34553808-34553827 | None:intergenic | 35.0% | |
| TCTTTATCCTACATAGGACT+TGG | - | chr5_3:34553809-34553828 | None:intergenic | 35.0% | |
| TGTAGGATAAAGATATGTCC+TGG | + | chr5_3:34553816-34553835 | Msa0809020:intron | 35.0% | |
| ACACTTTATAAGCTCATTCC+AGG | - | chr5_3:34553837-34553856 | None:intergenic | 35.0% | |
| TGGAATGAGCTTATAAAGTG+TGG | + | chr5_3:34553836-34553855 | Msa0809020:intron | 35.0% | |
| !! | CGTTACAAAATCGACTTGTA+AGG | - | chr5_3:34553871-34553890 | None:intergenic | 35.0% |
| ! | GATTTTGTAACGATGAGTCA+GGG | + | chr5_3:34553879-34553898 | Msa0809020:intron | 35.0% |
| !! | TTCTCACTGTTTTCTAGTGA+AGG | + | chr5_3:34554129-34554148 | Msa0809020:intron | 35.0% |
| ! | TGTGCCTGTTTAGTGTTTTA+AGG | + | chr5_3:34554253-34554272 | Msa0809020:intron | 35.0% |
| !! | GTGCCTGTTTAGTGTTTTAA+GGG | + | chr5_3:34554254-34554273 | Msa0809020:intron | 35.0% |
| TCTCCCTTAAAACACTAAAC+AGG | - | chr5_3:34554260-34554279 | None:intergenic | 35.0% | |
| ! | CAGTGAGAAAATGATGATGT+GGG | - | chr5_3:34554372-34554391 | None:intergenic | 35.0% |
| ! | ACAGTGAGAAAATGATGATG+TGG | - | chr5_3:34554119-34554138 | None:intergenic | 35.0% |
| !! | TCTTCTTTGAAACACTAGAC+AGG | - | chr5_3:34554513-34554532 | None:intergenic | 35.0% |
| AATCAAAGCGATCAATATGG+CGG | + | chr5_3:34554819-34554838 | Msa0809020:CDS | 35.0% | |
| ! | TGTTTTCATCACCCATTAGA+TGG | + | chr5_3:34554996-34555015 | Msa0809020:intron | 35.0% |
| ! | GCTGCAATTTTCTTCTTCCA+TGG | + | chr5_3:34551372-34551391 | Msa0809020:exon | 40.0% |
| ! | GTGAATTTGAAGCACGGATA+TGG | + | chr5_3:34551606-34551625 | Msa0809020:intron | 40.0% |
| ! | CATTTTTAACGGCGTGTACT+GGG | + | chr5_3:34551983-34552002 | Msa0809020:intron | 40.0% |
| !! | TTGGTGTTATTGGTGAAGCA+AGG | + | chr5_3:34552177-34552196 | Msa0809020:intron | 40.0% |
| !! | TGGTGTTATTGGTGAAGCAA+GGG | + | chr5_3:34552178-34552197 | Msa0809020:intron | 40.0% |
| TCAAGACAATCACCGGTATT+CGG | - | chr5_3:34552456-34552475 | None:intergenic | 40.0% | |
| CGTAACATCAAGACAATCAC+CGG | - | chr5_3:34552463-34552482 | None:intergenic | 40.0% | |
| TGGACCAAGCTTATGGAAAT+AGG | - | chr5_3:34552912-34552931 | None:intergenic | 40.0% | |
| CAGAACTGGATTCTGCAAAA+TGG | - | chr5_3:34553050-34553069 | None:intergenic | 40.0% | |
| GACAGATGAAGTTACAGAAC+TGG | - | chr5_3:34553064-34553083 | None:intergenic | 40.0% | |
| ! | ATCCATAGATGATTTGGGTC+TGG | - | chr5_3:34553094-34553113 | None:intergenic | 40.0% |
| TGGTTTCTTCCAGTCTTAAG+TGG | + | chr5_3:34553126-34553145 | Msa0809020:intron | 40.0% | |
| AGATAGCATCCAGAAATGGT+CGG | - | chr5_3:34553361-34553380 | None:intergenic | 40.0% | |
| GCAAGATCAAACTCAAATGC+AGG | - | chr5_3:34553477-34553496 | None:intergenic | 40.0% | |
| ! | AAGCCTTATCCCACTAAGTT+GGG | + | chr5_3:34553525-34553544 | Msa0809020:intron | 40.0% |
| !! | AGATAGTGGAAACTCAGCTT+AGG | - | chr5_3:34553739-34553758 | None:intergenic | 40.0% |
| GAAATACCCAAGTCCTATGT+AGG | + | chr5_3:34553799-34553818 | Msa0809020:intron | 40.0% | |
| !! | AAATCGACTTGTAAGGTGAG+AGG | - | chr5_3:34553864-34553883 | None:intergenic | 40.0% |
| ! | CGATTTTGTAACGATGAGTC+AGG | + | chr5_3:34553878-34553897 | Msa0809020:intron | 40.0% |
| TACAAGATTAAGACGTAGGC+AGG | - | chr5_3:34553969-34553988 | None:intergenic | 40.0% | |
| CAGGTACAAGATTAAGACGT+AGG | - | chr5_3:34553973-34553992 | None:intergenic | 40.0% | |
| TGAAACATGGATGAAGAAGC+AGG | - | chr5_3:34553992-34554011 | None:intergenic | 40.0% | |
| CAATAATGAGCGTCATTCGT+GGG | - | chr5_3:34554042-34554061 | None:intergenic | 40.0% | |
| ! | GAGAAAATGATGATGCGAGA+GGG | - | chr5_3:34554114-34554133 | None:intergenic | 40.0% |
| ! | TGAGAAAATGATGATGCGAG+AGG | - | chr5_3:34554115-34554134 | None:intergenic | 40.0% |
| ! | GAGAAAATGATGATGTGGGA+GGG | - | chr5_3:34554368-34554387 | None:intergenic | 40.0% |
| ! | TGAGAAAATGATGATGTGGG+AGG | - | chr5_3:34554369-34554388 | None:intergenic | 40.0% |
| TATCAGGCTAAACACTGTTC+AGG | - | chr5_3:34554573-34554592 | None:intergenic | 40.0% | |
| ! | TAAAAGCACAACAGTGTAGC+TGG | - | chr5_3:34554663-34554682 | None:intergenic | 40.0% |
| TGGAAAAATCAGATGCCTAC+CGG | + | chr5_3:34555016-34555035 | Msa0809020:CDS | 40.0% | |
| GGTTCTGCTGGTAAGAAATA+TGG | + | chr5_3:34555042-34555061 | Msa0809020:CDS | 40.0% | |
| TCTGCTGGTAAGAAATATGG+CGG | + | chr5_3:34555045-34555064 | Msa0809020:CDS | 40.0% | |
| TATGAAGCACGAACACTCCT+CGG | - | chr5_3:34551727-34551746 | None:intergenic | 45.0% | |
| CCAGTACACGCCGTTAAAAA+TGG | - | chr5_3:34551985-34552004 | None:intergenic | 45.0% | |
| !! | CCATTTTTAACGGCGTGTAC+TGG | + | chr5_3:34551982-34552001 | Msa0809020:intron | 45.0% |
| TAGACGACAACGTACTGTAG+TGG | + | chr5_3:34552022-34552041 | Msa0809020:intron | 45.0% | |
| ATGGTAGTATTTGTGGGGGA+AGG | + | chr5_3:34552118-34552137 | Msa0809020:intron | 45.0% | |
| AACTATAGCCTTCCCCTACT+CGG | - | chr5_3:34552256-34552275 | None:intergenic | 45.0% | |
| GAAGGCTATAGTTGACTGTG+TGG | + | chr5_3:34552263-34552282 | Msa0809020:intron | 45.0% | |
| ATCAAACAGGGTAGGCTTTG+TGG | + | chr5_3:34552341-34552360 | Msa0809020:intron | 45.0% | |
| TGACTTGAACACCCAAAGAG+AGG | - | chr5_3:34552367-34552386 | None:intergenic | 45.0% | |
| GTGGTTAGACAGCAGTTAGA+GGG | - | chr5_3:34552691-34552710 | None:intergenic | 45.0% | |
| TTTGAAAGGGGTGGCATTGT+TGG | - | chr5_3:34552756-34552775 | None:intergenic | 45.0% | |
| TACTTTCATCCCCGAGAACA+AGG | - | chr5_3:34552791-34552810 | None:intergenic | 45.0% | |
| GATCACATGGACCAAGCTTA+TGG | - | chr5_3:34552919-34552938 | None:intergenic | 45.0% | |
| TTGTGTGGGCCAGATCTATT+AGG | + | chr5_3:34553005-34553024 | Msa0809020:intron | 45.0% | |
| CTCCAGACCCAAATCATCTA+TGG | + | chr5_3:34553089-34553108 | Msa0809020:intron | 45.0% | |
| ! | CCAGTCTTAAGTGGCTTTTC+CGG | + | chr5_3:34553135-34553154 | Msa0809020:intron | 45.0% |
| ! | TGCCAATGTTGGTTAACGTC+TGG | + | chr5_3:34553173-34553192 | Msa0809020:intron | 45.0% |
| ! | CAATGTTGGTTAACGTCTGG+CGG | + | chr5_3:34553176-34553195 | Msa0809020:intron | 45.0% |
| GAGCAGATAGCATCCAGAAA+TGG | - | chr5_3:34553365-34553384 | None:intergenic | 45.0% | |
| CAACTTAGTGGGATAAGGCT+TGG | - | chr5_3:34553526-34553545 | None:intergenic | 45.0% | |
| ! | CAAGCCTTATCCCACTAAGT+TGG | + | chr5_3:34553524-34553543 | Msa0809020:intron | 45.0% |
| ! | CTTATCCCACTAAGTTGGGT+CGG | + | chr5_3:34553529-34553548 | Msa0809020:intron | 45.0% |
| GAGGGTTGTCAAATCACTAG+AGG | - | chr5_3:34553659-34553678 | None:intergenic | 45.0% | |
| ! | TGAAAAGTGATTTGGGCGTG+AGG | + | chr5_3:34553765-34553784 | Msa0809020:intron | 45.0% |
| ! | GAAAAGTGATTTGGGCGTGA+GGG | + | chr5_3:34553766-34553785 | Msa0809020:intron | 45.0% |
| ! | AAAAGTGATTTGGGCGTGAG+GGG | + | chr5_3:34553767-34553786 | Msa0809020:intron | 45.0% |
| AGATTAAGACGTAGGCAGGT+TGG | - | chr5_3:34553965-34553984 | None:intergenic | 45.0% | |
| GCAATAATGAGCGTCATTCG+TGG | - | chr5_3:34554043-34554062 | None:intergenic | 45.0% | |
| ! | ATGATGATGCGAGAGGGAAA+GGG | - | chr5_3:34554108-34554127 | None:intergenic | 45.0% |
| ! | AATGATGATGCGAGAGGGAA+AGG | - | chr5_3:34554109-34554128 | None:intergenic | 45.0% |
| GCTTATTTAGTCGGCTGATC+TGG | + | chr5_3:34554173-34554192 | Msa0809020:intron | 45.0% | |
| GGGAAATGGGAGTGAAAAAG+GGG | - | chr5_3:34554340-34554359 | None:intergenic | 45.0% | |
| GGGGAAATGGGAGTGAAAAA+GGG | - | chr5_3:34554341-34554360 | None:intergenic | 45.0% | |
| ! | ATGATGATGTGGGAGGGAAA+GGG | - | chr5_3:34554362-34554381 | None:intergenic | 45.0% |
| ! | AATGATGATGTGGGAGGGAA+AGG | - | chr5_3:34554363-34554382 | None:intergenic | 45.0% |
| ! | TTCTCACTGTTTTCCGGTGA+AGG | + | chr5_3:34554383-34554402 | Msa0809020:intron | 45.0% |
| GCTCATTTAGTCAGCTGATC+TGG | + | chr5_3:34554427-34554446 | Msa0809020:intron | 45.0% | |
| GCTAAACATTGTGTGCGATG+AGG | - | chr5_3:34554551-34554570 | None:intergenic | 45.0% | |
| ATGTGGGTATTTGTGTGTGC+AGG | + | chr5_3:34554788-34554807 | Msa0809020:intron | 45.0% | |
| TGGGCCATTGTCAACTTCAT+AGG | + | chr5_3:34554866-34554885 | Msa0809020:CDS | 45.0% | |
| CACGCCTATGAAGTTGACAA+TGG | - | chr5_3:34554873-34554892 | None:intergenic | 45.0% | |
| AAATCAGATGCCTACCGGAA+AGG | + | chr5_3:34555021-34555040 | Msa0809020:CDS | 45.0% | |
| TCTTACCAGCAGAACCTTTC+CGG | - | chr5_3:34555038-34555057 | None:intergenic | 45.0% | |
| ACTCACTATGATCACGTCCA+CGG | - | chr5_3:34555176-34555195 | None:intergenic | 45.0% | |
| TTCCAAGCTATATGCGCACA+TGG | + | chr5_3:34555439-34555458 | Msa0809020:three_prime_UTR | 45.0% | |
| TCCAAGCTATATGCGCACAT+GGG | + | chr5_3:34555440-34555459 | Msa0809020:three_prime_UTR | 45.0% | |
| !! | TAAAATTAAAATCTATAATA+GGG | - | chr5_3:34554937-34554956 | None:intergenic | 5.0% |
| !! | ATAAAATTAAAATCTATAAT+AGG | - | chr5_3:34554938-34554957 | None:intergenic | 5.0% |
| TCCATGGCTTACGTTGAACG+AGG | + | chr5_3:34551388-34551407 | Msa0809020:exon | 50.0% | |
| ACCTCGTTCAACGTAAGCCA+TGG | - | chr5_3:34551392-34551411 | None:intergenic | 50.0% | |
| ! | GTGTCGGTGTAGTGTCTACA+CGG | + | chr5_3:34551696-34551715 | Msa0809020:intron | 50.0% |
| TTAAAGCTGGAGCCTGCAGA+AGG | + | chr5_3:34551836-34551855 | Msa0809020:intron | 50.0% | |
| CAACTGACTATGCCTTCTGC+AGG | - | chr5_3:34551851-34551870 | None:intergenic | 50.0% | |
| GTAGTATTTGTGGGGGAAGG+TGG | + | chr5_3:34552121-34552140 | Msa0809020:intron | 50.0% | |
| ! | TAGGCTTTGTGGCCTCTCTT+TGG | + | chr5_3:34552352-34552371 | Msa0809020:intron | 50.0% |
| ! | AGGCTTTGTGGCCTCTCTTT+GGG | + | chr5_3:34552353-34552372 | Msa0809020:intron | 50.0% |
| GGTGGTTAGACAGCAGTTAG+AGG | - | chr5_3:34552692-34552711 | None:intergenic | 50.0% | |
| CCGGAAAAGCCACTTAAGAC+TGG | - | chr5_3:34553138-34553157 | None:intergenic | 50.0% | |
| CGCCAGACGTTAACCAACAT+TGG | - | chr5_3:34553178-34553197 | None:intergenic | 50.0% | |
| GCTTCTTCACCGACCATTTC+TGG | + | chr5_3:34553349-34553368 | Msa0809020:intron | 50.0% | |
| CGACCCAACTTAGTGGGATA+AGG | - | chr5_3:34553531-34553550 | None:intergenic | 50.0% | |
| TGTAGCCGACCCAACTTAGT+GGG | - | chr5_3:34553537-34553556 | None:intergenic | 50.0% | |
| ATGTAGCCGACCCAACTTAG+TGG | - | chr5_3:34553538-34553557 | None:intergenic | 50.0% | |
| ! | ACTAAGTTGGGTCGGCTACA+TGG | + | chr5_3:34553537-34553556 | Msa0809020:intron | 50.0% |
| ! | AAAGTGATTTGGGCGTGAGG+GGG | + | chr5_3:34553768-34553787 | Msa0809020:intron | 50.0% |
| ! | TTAAGACGTAGGCAGGTTGG+AGG | - | chr5_3:34553962-34553981 | None:intergenic | 50.0% |
| ! | TGATGATGCGAGAGGGAAAG+GGG | - | chr5_3:34554107-34554126 | None:intergenic | 50.0% |
| TCTAGTGAAGGCTGCTGATC+TGG | + | chr5_3:34554141-34554160 | Msa0809020:intron | 50.0% | |
| GGGGGAAATGGGAGTGAAAA+AGG | - | chr5_3:34554342-34554361 | None:intergenic | 50.0% | |
| ! | TGATGATGTGGGAGGGAAAG+GGG | - | chr5_3:34554361-34554380 | None:intergenic | 50.0% |
| GCTGGTAAGAAATATGGCGG+TGG | + | chr5_3:34555048-34555067 | Msa0809020:CDS | 50.0% | |
| GGTAAGAAATATGGCGGTGG+AGG | + | chr5_3:34555051-34555070 | Msa0809020:CDS | 50.0% | |
| ! | GTGGCCTTGACAATGTTCGT+GGG | + | chr5_3:34555139-34555158 | Msa0809020:CDS | 50.0% |
| CTAGCCCACGAACATTGTCA+AGG | - | chr5_3:34555146-34555165 | None:intergenic | 50.0% | |
| TCAGGTTCATTGCCTGCATG+CGG | + | chr5_3:34555297-34555316 | Msa0809020:intron | 50.0% | |
| ACCCATGTGCGCATATAGCT+TGG | - | chr5_3:34555444-34555463 | None:intergenic | 50.0% | |
| !! | ACAGTGTCGGCGTGTCATTG+CGG | - | chr5_3:34551636-34551655 | None:intergenic | 55.0% |
| GTGTCTACACGGCTAATCCG+AGG | + | chr5_3:34551707-34551726 | Msa0809020:intron | 55.0% | |
| ATCTCCAGGGCATACCGAGT+AGG | + | chr5_3:34552239-34552258 | Msa0809020:intron | 55.0% | |
| TCTCCAGGGCATACCGAGTA+GGG | + | chr5_3:34552240-34552259 | Msa0809020:intron | 55.0% | |
| ! | CTTTTCCGGCAATGACCTGC+TGG | + | chr5_3:34553149-34553168 | Msa0809020:intron | 55.0% |
| AACCAACATTGGCAGCCAGC+AGG | - | chr5_3:34553167-34553186 | None:intergenic | 55.0% | |
| TTAACGTCTGGCGGCTCCAA+TGG | + | chr5_3:34553185-34553204 | Msa0809020:intron | 55.0% | |
| CGAGAGGGAAAGGGGGAAAT+AGG | - | chr5_3:34554099-34554118 | None:intergenic | 55.0% | |
| GATGATGCGAGAGGGAAAGG+GGG | - | chr5_3:34554106-34554125 | None:intergenic | 55.0% | |
| TGGGAGGGAAAGGGGGAAAT+GGG | - | chr5_3:34554353-34554372 | None:intergenic | 55.0% | |
| GATGATGTGGGAGGGAAAGG+GGG | - | chr5_3:34554360-34554379 | None:intergenic | 55.0% | |
| ACCAGCAGAACCTTTCCGGT+AGG | - | chr5_3:34555034-34555053 | None:intergenic | 55.0% | |
| AAATATGGCGGTGGAGGTCC+TGG | + | chr5_3:34555057-34555076 | Msa0809020:CDS | 55.0% | |
| ACATTGTCAAGGCCACCACG+AGG | - | chr5_3:34555135-34555154 | None:intergenic | 55.0% | |
| ! | GGTGGCCTTGACAATGTTCG+TGG | + | chr5_3:34555138-34555157 | Msa0809020:CDS | 55.0% |
| !! | CGTGGGCTAGATAGTATCCG+TGG | + | chr5_3:34555156-34555175 | Msa0809020:CDS | 55.0% |
| !! | CAGTGTCGGCGTGTCATTGC+GGG | - | chr5_3:34551635-34551654 | None:intergenic | 60.0% |
| CTCCAGGGCATACCGAGTAG+GGG | + | chr5_3:34552241-34552260 | Msa0809020:intron | 60.0% | |
| TTCCCCTACTCGGTATGCCC+TGG | - | chr5_3:34552246-34552265 | None:intergenic | 60.0% | |
| AGGGCATACCGAGTAGGGGA+AGG | + | chr5_3:34552245-34552264 | Msa0809020:intron | 60.0% | |
| ! | GACCTGCTGGCTGCCAATGT+TGG | + | chr5_3:34553162-34553181 | Msa0809020:intron | 60.0% |
| AACCATGCCCCAGCCACCAT+TGG | - | chr5_3:34553204-34553223 | None:intergenic | 60.0% | |
| AATGGTGGCTGGGGCATGGT+TGG | + | chr5_3:34553203-34553222 | Msa0809020:intron | 60.0% | |
| ! | GCAGGTTGGAGGTGGCAAAC+TGG | - | chr5_3:34553951-34553970 | None:intergenic | 60.0% |
| ! | AGACGTAGGCAGGTTGGAGG+TGG | - | chr5_3:34553959-34553978 | None:intergenic | 60.0% |
| GTGGGAGGGAAAGGGGGAAA+TGG | - | chr5_3:34554354-34554373 | None:intergenic | 60.0% | |
| TCCGGTGAAGGCTGCTGATC+TGG | + | chr5_3:34554395-34554414 | Msa0809020:intron | 60.0% | |
| GCCAGATCAGCAGCCTTCAC+CGG | - | chr5_3:34554399-34554418 | None:intergenic | 60.0% | |
| GCCTACCGGAAAGGTTCTGC+TGG | + | chr5_3:34555030-34555049 | Msa0809020:CDS | 60.0% | |
| !! | GACCATATGGTGGCGGTCCT+CGG | + | chr5_3:34555103-34555122 | Msa0809020:CDS | 60.0% |
| !! | ACCATATGGTGGCGGTCCTC+GGG | + | chr5_3:34555104-34555123 | Msa0809020:CDS | 60.0% |
| TTGTCAAGGCCACCACGAGG+AGG | - | chr5_3:34555132-34555151 | None:intergenic | 60.0% | |
| GGCAGCCAGCAGGTCATTGC+CGG | - | chr5_3:34553157-34553176 | None:intergenic | 65.0% | |
| ACGTCTGGCGGCTCCAATGG+TGG | + | chr5_3:34553188-34553207 | Msa0809020:intron | 65.0% | |
| TGGCGGCTCCAATGGTGGCT+GGG | + | chr5_3:34553193-34553212 | Msa0809020:intron | 65.0% | |
| CTCCAATGGTGGCTGGGGCA+TGG | + | chr5_3:34553199-34553218 | Msa0809020:intron | 65.0% | |
| ! | TTGGGCGTGAGGGGGTGTAC+TGG | + | chr5_3:34553776-34553795 | Msa0809020:intron | 65.0% |
| ! | TGGGCGTGAGGGGGTGTACT+GGG | + | chr5_3:34553777-34553796 | Msa0809020:intron | 65.0% |
| TATGGCGGTGGAGGTCCTGG+TGG | + | chr5_3:34555060-34555079 | Msa0809020:CDS | 65.0% | |
| !! | GGTGGTGGGGGACCATATGG+TGG | + | chr5_3:34555093-34555112 | Msa0809020:CDS | 65.0% |
| GGTGGGGGACCATATGGTGG+CGG | + | chr5_3:34555096-34555115 | Msa0809020:CDS | 65.0% | |
| !! | CCATATGGTGGCGGTCCTCG+GGG | + | chr5_3:34555105-34555124 | Msa0809020:CDS | 65.0% |
| CCACAGCATGAGCCGCATGC+AGG | - | chr5_3:34555312-34555331 | None:intergenic | 65.0% | |
| CCTGCATGCGGCTCATGCTG+TGG | + | chr5_3:34555309-34555328 | Msa0809020:CDS | 65.0% | |
| CTGGCGGCTCCAATGGTGGC+TGG | + | chr5_3:34553192-34553211 | Msa0809020:intron | 70.0% | |
| GGCGGCTCCAATGGTGGCTG+GGG | + | chr5_3:34553194-34553213 | Msa0809020:intron | 70.0% | |
| !! | GGTGGAGGTCCTGGTGGTGG+TGG | + | chr5_3:34555066-34555085 | Msa0809020:CDS | 70.0% |
| !! | GGAGGTCCTGGTGGTGGTGG+TGG | + | chr5_3:34555069-34555088 | Msa0809020:CDS | 70.0% |
| !! | GGTCCTGGTGGTGGTGGTGG+CGG | + | chr5_3:34555072-34555091 | Msa0809020:CDS | 70.0% |
| !! | GTGGTGGTGGTGGCGGTGGT+GGG | + | chr5_3:34555079-34555098 | Msa0809020:CDS | 70.0% |
| !! | TGGTGGTGGTGGCGGTGGTG+GGG | + | chr5_3:34555080-34555099 | Msa0809020:CDS | 70.0% |
| !! | GGCGGTGGTGGGGGACCATA+TGG | + | chr5_3:34555090-34555109 | Msa0809020:CDS | 70.0% |
| CCCCGAGGACCGCCACCATA+TGG | - | chr5_3:34555108-34555127 | None:intergenic | 70.0% | |
| GGCGGTGGAGGTCCTGGTGG+TGG | + | chr5_3:34555063-34555082 | Msa0809020:CDS | 75.0% | |
| CCACCGCCACCACCACCACC+AGG | - | chr5_3:34555078-34555097 | None:intergenic | 75.0% | |
| !! | CCTGGTGGTGGTGGTGGCGG+TGG | + | chr5_3:34555075-34555094 | Msa0809020:CDS | 75.0% |
| !! | GGTGGTGGTGGTGGCGGTGG+TGG | + | chr5_3:34555078-34555097 | Msa0809020:CDS | 75.0% |
| !! | GGTGGTGGTGGCGGTGGTGG+GGG | + | chr5_3:34555081-34555100 | Msa0809020:CDS | 75.0% |
| GGTCCTCGGGGACCTCCTCG+TGG | + | chr5_3:34555117-34555136 | Msa0809020:CDS | 75.0% | |
| CCACCACGAGGAGGTCCCCG+AGG | - | chr5_3:34555123-34555142 | None:intergenic | 75.0% | |
| CCTCGGGGACCTCCTCGTGG+TGG | + | chr5_3:34555120-34555139 | Msa0809020:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 34551300 | 34555643 | 34551300 | ID=Msa0809020;Name=Msa0809020 |
| chr5_3 | mRNA | 34551300 | 34555643 | 34551300 | ID=Msa0809020-mRNA-1;Parent=Msa0809020;Name=Msa0809020-mRNA-1;_AED=0.10;_eAED=0.10;_QI=91|1|1|1|0.66|0.75|4|308|110 |
| chr5_3 | exon | 34551300 | 34551409 | 34551300 | ID=Msa0809020-mRNA-1:exon:10996;Parent=Msa0809020-mRNA-1 |
| chr5_3 | exon | 34554810 | 34554913 | 34554810 | ID=Msa0809020-mRNA-1:exon:10997;Parent=Msa0809020-mRNA-1 |
| chr5_3 | exon | 34555015 | 34555189 | 34555015 | ID=Msa0809020-mRNA-1:exon:10998;Parent=Msa0809020-mRNA-1 |
| chr5_3 | exon | 34555301 | 34555643 | 34555301 | ID=Msa0809020-mRNA-1:exon:10999;Parent=Msa0809020-mRNA-1 |
| chr5_3 | five_prime_UTR | 34551300 | 34551390 | 34551300 | ID=Msa0809020-mRNA-1:five_prime_utr;Parent=Msa0809020-mRNA-1 |
| chr5_3 | CDS | 34551391 | 34551409 | 34551391 | ID=Msa0809020-mRNA-1:cds;Parent=Msa0809020-mRNA-1 |
| chr5_3 | CDS | 34554810 | 34554913 | 34554810 | ID=Msa0809020-mRNA-1:cds;Parent=Msa0809020-mRNA-1 |
| chr5_3 | CDS | 34555015 | 34555189 | 34555015 | ID=Msa0809020-mRNA-1:cds;Parent=Msa0809020-mRNA-1 |
| chr5_3 | CDS | 34555301 | 34555335 | 34555301 | ID=Msa0809020-mRNA-1:cds;Parent=Msa0809020-mRNA-1 |
| chr5_3 | three_prime_UTR | 34555336 | 34555643 | 34555336 | ID=Msa0809020-mRNA-1:three_prime_utr;Parent=Msa0809020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
