Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0730610 | XP_003614777.1 | 97.273 | 110 | 3 | 0 | 1 | 110 | 1 | 110 | 8.91e-69 | 211 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0730610 | G7K8W6 | 97.273 | 110 | 3 | 0 | 1 | 110 | 1 | 110 | 4.26e-69 | 211 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0730610 | Msa0809020 | 0.840579 | 7.985063e-58 | -8.615850e-47 |
| Msa0730610 | Msa1079100 | 0.804989 | 1.657741e-49 | -8.615850e-47 |
| Msa0730610 | Msa1124010 | 0.832089 | 1.153611e-55 | -8.615850e-47 |
| Msa0473270 | Msa0730610 | 0.812310 | 4.521858e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0730610 | MtrunA17_Chr5g0424191 | 91.818 | 110 | 9 | 0 | 1 | 110 | 7 | 116 | 1.04e-68 | 201 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0730610 | AT4G08230.1 | 72.566 | 113 | 28 | 1 | 1 | 110 | 1 | 113 | 5.21e-36 | 119 |
| Msa0730610 | AT4G08230.2 | 69.444 | 72 | 19 | 2 | 42 | 110 | 1 | 72 | 9.44e-12 | 56.2 |
Find 52 sgRNAs with CRISPR-Local
Find 364 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGGTGGTGGTGGCGGTGG+TGG | 0.245455 | 5_1:-40301819 | Msa0730610:CDS |
| TCTTACCAGCAGAACCTTTC+CGG | 0.270030 | 5_1:+40301862 | None:intergenic |
| GAAAATTGCAGCAATTGAAT+TGG | 0.323444 | 5_1:+40306271 | None:intergenic |
| GTGGTGGTGGTGGCGGTGGT+GGG | 0.326929 | 5_1:-40301818 | Msa0730610:CDS |
| ACCATATGGTGGTGGTCCTC+CGG | 0.328987 | 5_1:-40301793 | Msa0730610:CDS |
| GGTGGTGGTGGCGGTGGTGG+GGG | 0.330183 | 5_1:-40301816 | Msa0730610:CDS |
| CGCTCTCTAGATTACGGTTA+TGG | 0.337107 | 5_1:+40306326 | None:intergenic |
| TGGTGGTGGTGGCGGTGGTG+GGG | 0.349873 | 5_1:-40301817 | Msa0730610:CDS |
| GGAGGTCCTGGTGGTGGTGG+TGG | 0.353019 | 5_1:-40301828 | Msa0730610:CDS |
| TCATAGGCTATTTAAATAGT+AGG | 0.359573 | 5_1:-40301350 | Msa0730610:three_prime_UTR |
| TGGGCCATTGTCAACTTCAT+AGG | 0.363056 | 5_1:-40302031 | Msa0730610:CDS |
| GGTTCTGCTGGTAAGAAATA+TGG | 0.392186 | 5_1:-40301855 | Msa0730610:CDS |
| CCATATGGTGGTGGTCCTCC+GGG | 0.394582 | 5_1:-40301792 | Msa0730610:CDS |
| GGTGGAGGTCCTGGTGGTGG+TGG | 0.408303 | 5_1:-40301831 | Msa0730610:CDS |
| ACCAACAAATATTGACAAAT+CGG | 0.415272 | 5_1:+40301547 | None:intergenic |
| TGATATCGCTCTCTAGATTA+CGG | 0.422876 | 5_1:+40306320 | None:intergenic |
| TCCGATTTGTCAATATTTGT+TGG | 0.423463 | 5_1:-40301548 | Msa0730610:three_prime_UTR |
| TTAAATCAAAGCGATCAATA+TGG | 0.429926 | 5_1:-40302081 | Msa0730610:CDS |
| AAATATGGCGGTGGAGGTCC+TGG | 0.450929 | 5_1:-40301840 | Msa0730610:CDS |
| GGCGGTGGAGGTCCTGGTGG+TGG | 0.456240 | 5_1:-40301834 | Msa0730610:CDS |
| AGGCCACCACGAGGAGGGCC+CGG | 0.460516 | 5_1:+40301774 | None:intergenic |
| CCACCGCCACCACCACCACC+AGG | 0.481874 | 5_1:+40301822 | None:intergenic |
| CCCGGAGGACCACCACCATA+TGG | 0.482279 | 5_1:+40301792 | None:intergenic |
| ACCCATGTGCGCATATAGCT+TGG | 0.487487 | 5_1:+40301455 | None:intergenic |
| GCCTACCGGAAAGGTTCTGC+TGG | 0.490954 | 5_1:-40301867 | Msa0730610:CDS |
| ATTGTCATGCTTAATCTCAT+AGG | 0.494130 | 5_1:-40301366 | Msa0730610:three_prime_UTR |
| GGTAAGAAATATGGCGGTGG+AGG | 0.533644 | 5_1:-40301846 | Msa0730610:CDS |
| CCTGCATGCGGCTCATGCTG+TGG | 0.545668 | 5_1:-40301587 | Msa0730610:CDS |
| CCACAGCATGAGCCGCATGC+AGG | 0.547108 | 5_1:+40301587 | None:intergenic |
| GGTGGCCTTGACAATGTTCG+TGG | 0.550925 | 5_1:-40301759 | Msa0730610:CDS |
| TTCCAAGCTATATGCGCACA+TGG | 0.558112 | 5_1:-40301457 | Msa0730610:three_prime_UTR |
| ACCTCGTTCAACGTAAGCCA+TGG | 0.571060 | 5_1:+40306243 | None:intergenic |
| TGTCAAGGCCACCACGAGGA+GGG | 0.583036 | 5_1:+40301769 | None:intergenic |
| AAATCAGATGCCTACCGGAA+AGG | 0.583765 | 5_1:-40301876 | Msa0730610:CDS |
| TATGGCGGTGGAGGTCCTGG+TGG | 0.603077 | 5_1:-40301837 | Msa0730610:CDS |
| GGTCCTCCGGGCCCTCCTCG+TGG | 0.606838 | 5_1:-40301780 | Msa0730610:CDS |
| TCAGGTTCATTGCCTGCATG+CGG | 0.608267 | 5_1:-40301599 | Msa0730610:intron |
| CCTCCGGGCCCTCCTCGTGG+TGG | 0.611047 | 5_1:-40301777 | Msa0730610:CDS |
| GCTGGTAAGAAATATGGCGG+TGG | 0.624855 | 5_1:-40301849 | Msa0730610:CDS |
| TTGTCAAGGCCACCACGAGG+AGG | 0.627107 | 5_1:+40301768 | None:intergenic |
| CCACCACGAGGAGGGCCCGG+AGG | 0.627187 | 5_1:+40301777 | None:intergenic |
| TCCATGGCTTACGTTGAACG+AGG | 0.632346 | 5_1:-40306244 | Msa0730610:intron |
| ACTCACTGTGATCACGTCCA+CGG | 0.644008 | 5_1:+40301724 | None:intergenic |
| ACCAGCAGAACCTTTCCGGT+AGG | 0.651291 | 5_1:+40301866 | None:intergenic |
| GTGGCCTTGACAATGTTCGT+GGG | 0.667407 | 5_1:-40301758 | Msa0730610:CDS |
| TCCAAGCTATATGCGCACAT+GGG | 0.667669 | 5_1:-40301456 | Msa0730610:three_prime_UTR |
| CACGCCTATGAAGTTGACAA+TGG | 0.673174 | 5_1:+40302027 | None:intergenic |
| CTAGCCCACGAACATTGTCA+AGG | 0.673652 | 5_1:+40301754 | None:intergenic |
| AATCAAAGCGATCAATATGG+CGG | 0.683201 | 5_1:-40302078 | Msa0730610:CDS |
| CGTGGGCTAGATAGTATCCG+TGG | 0.707220 | 5_1:-40301741 | Msa0730610:CDS |
| TCTGCTGGTAAGAAATATGG+CGG | 0.710033 | 5_1:-40301852 | Msa0730610:CDS |
| ACATTGTCAAGGCCACCACG+AGG | 0.771312 | 5_1:+40301765 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATCAAAATCTATAATA+GGG | + | chr5_1:40305654-40305673 | None:intergenic | 10.0% |
| !! | ATAAAATCAAAATCTATAAT+AGG | + | chr5_1:40305655-40305674 | None:intergenic | 10.0% |
| !! | AATTGGAAAAAAAAAAAAGA+AGG | + | chr5_1:40301329-40301348 | None:intergenic | 15.0% |
| !! | TTCTTTAAATATAAGATTGT+CGG | + | chr5_1:40301591-40301610 | None:intergenic | 15.0% |
| !! | TTTGAGAAAATTACATAATT+TGG | - | chr5_1:40301680-40301699 | Msa0730610:intron | 15.0% |
| !!! | TTTTTAATAATGAAAGAACT+TGG | - | chr5_1:40302159-40302178 | Msa0730610:intron | 15.0% |
| !! | TAAATATTAAGATAATTGTG+TGG | - | chr5_1:40303003-40303022 | Msa0730610:intron | 15.0% |
| !! | AAATATTAAGATAATTGTGT+GGG | - | chr5_1:40303004-40303023 | Msa0730610:intron | 15.0% |
| !! | AAAGAAATAATGTATATACA+AGG | + | chr5_1:40305464-40305483 | None:intergenic | 15.0% |
| !! | ATAAAACATATTAGCAAATA+TGG | + | chr5_1:40305982-40306001 | None:intergenic | 15.0% |
| !!! | ATTTTTGATTATCACTGATT+AGG | - | chr5_1:40301431-40301450 | Msa0730610:three_prime_UTR | 20.0% |
| !!! | TTTGGTTTAATTATATGTGT+CGG | - | chr5_1:40301698-40301717 | Msa0730610:intron | 20.0% |
| !! | ATTGTTAATTACATTAAAGC+TGG | - | chr5_1:40301841-40301860 | Msa0730610:CDS | 20.0% |
| !!! | GATGATTAACTAATTTGTTT+CGG | + | chr5_1:40301917-40301936 | None:intergenic | 20.0% |
| !! | TGAGATTAACAAAAAGTAAT+TGG | + | chr5_1:40302240-40302259 | None:intergenic | 20.0% |
| !!! | ATTACTTTTTGTTAATCTCA+AGG | - | chr5_1:40302240-40302259 | Msa0730610:intron | 20.0% |
| !!! | TTACTTTTTGTTAATCTCAA+GGG | - | chr5_1:40302241-40302260 | Msa0730610:intron | 20.0% |
| !! | TGATATCAAATTTAAGAGTT+TGG | + | chr5_1:40302332-40302351 | None:intergenic | 20.0% |
| !! | TTGATATCAATTTATCAAAC+AGG | - | chr5_1:40302343-40302362 | Msa0730610:intron | 20.0% |
| !! | TGATATCAATTTATCAAACA+GGG | - | chr5_1:40302344-40302363 | Msa0730610:intron | 20.0% |
| !!! | TCAATTTTCTATTTCTATCT+AGG | + | chr5_1:40302537-40302556 | None:intergenic | 20.0% |
| !!! | AAAGAAGTGAGATTAATTTT+GGG | + | chr5_1:40302621-40302640 | None:intergenic | 20.0% |
| !!! | TAAAGAAGTGAGATTAATTT+TGG | + | chr5_1:40302622-40302641 | None:intergenic | 20.0% |
| !! | AAAAGTGAAATAGAGTTATT+AGG | + | chr5_1:40302743-40302762 | None:intergenic | 20.0% |
| !! | GAAATTAATTATTCATCACA+TGG | + | chr5_1:40302940-40302959 | None:intergenic | 20.0% |
| !! | GATGAATAATTAATTTCAGT+TGG | - | chr5_1:40302943-40302962 | Msa0730610:intron | 20.0% |
| !!! | TTTTCTATGATAAGTGATTT+GGG | - | chr5_1:40303813-40303832 | Msa0730610:intron | 20.0% |
| !! | TGACATTAGGTTATTATATT+GGG | + | chr5_1:40303960-40303979 | None:intergenic | 20.0% |
| !! | TTGACATTAGGTTATTATAT+TGG | + | chr5_1:40303961-40303980 | None:intergenic | 20.0% |
| !!! | CATTTGATAGTTGTATATAA+AGG | + | chr5_1:40304342-40304361 | None:intergenic | 20.0% |
| !! | CGTATAAATAAGAGAAATAA+TGG | + | chr5_1:40304459-40304478 | None:intergenic | 20.0% |
| !! | TGAGTAAAATATTAATGTGT+TGG | + | chr5_1:40304543-40304562 | None:intergenic | 20.0% |
| !! | ATTACTATAGCTAAATTCAA+AGG | + | chr5_1:40304678-40304697 | None:intergenic | 20.0% |
| !! | TATAGTAATAAATCACTGTT+AGG | - | chr5_1:40304689-40304708 | Msa0730610:intron | 20.0% |
| !! | ATGCAATGTTGAATTTAAAT+TGG | - | chr5_1:40304760-40304779 | Msa0730610:intron | 20.0% |
| !! | TGCAATGTTGAATTTAAATT+GGG | - | chr5_1:40304761-40304780 | Msa0730610:intron | 20.0% |
| !! | AAATTCAACATTACATAGAA+AGG | + | chr5_1:40305009-40305028 | None:intergenic | 20.0% |
| !! | TGTAATGTTGAATTTAGATT+TGG | - | chr5_1:40305014-40305033 | Msa0730610:intron | 20.0% |
| !! | ATTGTAAGAATACATCAATT+TGG | + | chr5_1:40305694-40305713 | None:intergenic | 20.0% |
| ! | GAATTGAAATAATTGAGAAG+AGG | + | chr5_1:40301402-40301421 | None:intergenic | 25.0% |
| !! | AATATTGTGAATTTGAAGCA+CGG | - | chr5_1:40301618-40301637 | Msa0730610:intron | 25.0% |
| ! | TCTCAAATTATTAACAGTGT+CGG | + | chr5_1:40301667-40301686 | None:intergenic | 25.0% |
| !!! | TGCTCAATTTTGACTTAAAA+TGG | - | chr5_1:40301958-40301977 | Msa0730610:intron | 25.0% |
| ! | TGACTTAAAATGGTTATGAT+TGG | - | chr5_1:40301968-40301987 | Msa0730610:intron | 25.0% |
| ! | TTAAAATGGTTATGATTGGT+TGG | - | chr5_1:40301972-40301991 | Msa0730610:intron | 25.0% |
| !!! | ATGTTTTAAATCTCTTTCTG+AGG | - | chr5_1:40302069-40302088 | Msa0730610:CDS | 25.0% |
| !!! | AGTAAGTTATTTGGTGTTAT+TGG | - | chr5_1:40302182-40302201 | Msa0730610:intron | 25.0% |
| ! | TATCAAATTTAAGAGTTTGG+AGG | + | chr5_1:40302329-40302348 | None:intergenic | 25.0% |
| !!! | TGTTGAAGTCATTTTCTTAA+AGG | - | chr5_1:40302391-40302410 | Msa0730610:intron | 25.0% |
| !!! | GTTGAAGTCATTTTCTTAAA+GGG | - | chr5_1:40302392-40302411 | Msa0730610:intron | 25.0% |
| ! | GTATTAATATTACCGAATAC+CGG | - | chr5_1:40302456-40302475 | Msa0730610:intron | 25.0% |
| ! | TTGAATGAATGATTGTGAAT+AGG | - | chr5_1:40302588-40302607 | Msa0730610:intron | 25.0% |
| !! | AAGAAGTGAGATTAATTTTG+GGG | + | chr5_1:40302620-40302639 | None:intergenic | 25.0% |
| ! | TAAATAGGAGAAACAGATAA+AGG | + | chr5_1:40302676-40302695 | None:intergenic | 25.0% |
| ! | AGTGAATGTCATGTATAAAT+AGG | + | chr5_1:40302691-40302710 | None:intergenic | 25.0% |
| !!! | AGAGTTATTAGGATTAGTTA+GGG | + | chr5_1:40302732-40302751 | None:intergenic | 25.0% |
| !!! | TAGAGTTATTAGGATTAGTT+AGG | + | chr5_1:40302733-40302752 | None:intergenic | 25.0% |
| ! | CTTCAAAATAATCTTGTTCT+CGG | - | chr5_1:40302788-40302807 | Msa0730610:intron | 25.0% |
| ! | TTCAAAATAATCTTGTTCTC+GGG | - | chr5_1:40302789-40302808 | Msa0730610:intron | 25.0% |
| ! | AATAATTAATTTCAGTTGGC+AGG | - | chr5_1:40302947-40302966 | Msa0730610:intron | 25.0% |
| ! | TGGATAGAAGATATGATATA+TGG | + | chr5_1:40303627-40303646 | None:intergenic | 25.0% |
| ! | AAGAAGAATAAATCAGATGA+CGG | + | chr5_1:40303730-40303749 | None:intergenic | 25.0% |
| ! | ACTTATCATAGAAAAGATAG+TGG | + | chr5_1:40303808-40303827 | None:intergenic | 25.0% |
| !! | CTTTTCTATGATAAGTGATT+TGG | - | chr5_1:40303812-40303831 | Msa0730610:intron | 25.0% |
| ! | ATTTATCCTACATAAGACTT+GGG | + | chr5_1:40303863-40303882 | None:intergenic | 25.0% |
| ! | TATTTATCCTACATAAGACT+TGG | + | chr5_1:40303864-40303883 | None:intergenic | 25.0% |
| ! | ACTCTTTATAAACTCATTCT+AGG | + | chr5_1:40303892-40303911 | None:intergenic | 25.0% |
| ! | TAGAATGAGTTTATAAAGAG+TGG | - | chr5_1:40303891-40303910 | Msa0730610:intron | 25.0% |
| ! | GTGTCTAATAATTTGACATT+AGG | + | chr5_1:40303973-40303992 | None:intergenic | 25.0% |
| ! | CTTAAAACAATGTTGAAACA+TGG | + | chr5_1:40304061-40304080 | None:intergenic | 25.0% |
| !! | CATTTGATAGCTGTATATAA+CGG | + | chr5_1:40304417-40304436 | None:intergenic | 25.0% |
| !! | TATGGTAATTGATTAGTTAG+AGG | + | chr5_1:40304490-40304509 | None:intergenic | 25.0% |
| !! | TGCAATTTGATATTTCTGTA+AGG | - | chr5_1:40304636-40304655 | Msa0730610:intron | 25.0% |
| !! | GCAATTTGATATTTCTGTAA+GGG | - | chr5_1:40304637-40304656 | Msa0730610:intron | 25.0% |
| ! | AAATTCAACATTGCATAGAA+AGG | + | chr5_1:40304756-40304775 | None:intergenic | 25.0% |
| !!! | TTTTTGAGTGTTCATTTAGT+CGG | - | chr5_1:40305126-40305145 | Msa0730610:intron | 25.0% |
| !!! | TCTTCTTTAAAACACTAGAT+AGG | + | chr5_1:40305221-40305240 | None:intergenic | 25.0% |
| !! | TGTATATACAAGGTTTTCTT+TGG | + | chr5_1:40305454-40305473 | None:intergenic | 25.0% |
| ! | TTAAATCAAAGCGATCAATA+TGG | - | chr5_1:40305533-40305552 | Msa0730610:intron | 25.0% |
| !! | ATCTGATTTTTCCATCTAAT+GGG | + | chr5_1:40305727-40305746 | None:intergenic | 25.0% |
| ! | TCTAAATAACCAAAAGATCA+AGG | + | chr5_1:40305933-40305952 | None:intergenic | 25.0% |
| ! | ACCAACAAATATTGACAAAT+CGG | + | chr5_1:40306070-40306089 | None:intergenic | 25.0% |
| !! | ATTTGTATGACTTTTAGACA+CGG | + | chr5_1:40306221-40306240 | None:intergenic | 25.0% |
| ! | TCATAGGCTATTTAAATAGT+AGG | - | chr5_1:40306264-40306283 | Msa0730610:five_prime_UTR | 25.0% |
| GAAAATTGCAGCAATTGAAT+TGG | + | chr5_1:40301346-40301365 | None:intergenic | 30.0% | |
| ! | GATTATCACTGATTAGGTTT+AGG | - | chr5_1:40301437-40301456 | Msa0730610:three_prime_UTR | 30.0% |
| TCGGCAACAATTGAAAAATT+GGG | + | chr5_1:40301572-40301591 | None:intergenic | 30.0% | |
| ! | TTTTCCAGTTTTCTATGTTG+AGG | - | chr5_1:40301767-40301786 | Msa0730610:CDS | 30.0% |
| !! | TCGTTGTTTTCGATTACTTT+AGG | - | chr5_1:40302101-40302120 | Msa0730610:intron | 30.0% |
| CACAAATACTACCATTACAT+CGG | + | chr5_1:40302128-40302147 | None:intergenic | 30.0% | |
| GATGTAATGGTAGTATTTGT+GGG | - | chr5_1:40302127-40302146 | Msa0730610:intron | 30.0% | |
| ATGTAATGGTAGTATTTGTG+GGG | - | chr5_1:40302128-40302147 | Msa0730610:intron | 30.0% | |
| AGAACTTGGAGTAAGTTATT+TGG | - | chr5_1:40302173-40302192 | Msa0730610:intron | 30.0% | |
| ATCAATTTATCAAACAGGGT+AGG | - | chr5_1:40302348-40302367 | Msa0730610:intron | 30.0% | |
| ACACTCTTAATAGATGTACT+AGG | - | chr5_1:40302416-40302435 | Msa0730610:intron | 30.0% | |
| CACTCTTAATAGATGTACTA+GGG | - | chr5_1:40302417-40302436 | Msa0730610:intron | 30.0% | |
| !!! | AGTATCATTTTTTGCAAAGG+CGG | + | chr5_1:40302506-40302525 | None:intergenic | 30.0% |
| !!! | CACAGTATCATTTTTTGCAA+AGG | + | chr5_1:40302509-40302528 | None:intergenic | 30.0% |
| TTGCAAAAAATGATACTGTG+AGG | - | chr5_1:40302509-40302528 | Msa0730610:intron | 30.0% | |
| ! | AGAAGTGAGATTAATTTTGG+GGG | + | chr5_1:40302619-40302638 | None:intergenic | 30.0% |
| !!! | GAACAAGATTATTTTGAAGG+AGG | + | chr5_1:40302787-40302806 | None:intergenic | 30.0% |
| !!! | CGAGAACAAGATTATTTTGA+AGG | + | chr5_1:40302790-40302809 | None:intergenic | 30.0% |
| TCAAAATAATCTTGTTCTCG+GGG | - | chr5_1:40302790-40302809 | Msa0730610:intron | 30.0% | |
| GTGCTTTAATTGAATTGTCT+CGG | + | chr5_1:40302839-40302858 | None:intergenic | 30.0% | |
| ! | TTTTCCTATTTCCATAAGCT+CGG | - | chr5_1:40302913-40302932 | Msa0730610:intron | 30.0% |
| ATTCACGATAGAAAAAGATG+GGG | + | chr5_1:40302982-40303001 | None:intergenic | 30.0% | |
| GATTCACGATAGAAAAAGAT+GGG | + | chr5_1:40302983-40303002 | None:intergenic | 30.0% | |
| AGATTCACGATAGAAAAAGA+TGG | + | chr5_1:40302984-40303003 | None:intergenic | 30.0% | |
| AGAACTGTATTCTGCAAAAT+GGG | + | chr5_1:40303057-40303076 | None:intergenic | 30.0% | |
| TACACATCCATAGATGATTT+GGG | + | chr5_1:40303107-40303126 | None:intergenic | 30.0% | |
| TTACACATCCATAGATGATT+TGG | + | chr5_1:40303108-40303127 | None:intergenic | 30.0% | |
| TGTGGACATAAAGTTTAAAC+AGG | + | chr5_1:40303235-40303254 | None:intergenic | 30.0% | |
| AGGAACAAAGTTCTTGAAAT+AGG | + | chr5_1:40303314-40303333 | None:intergenic | 30.0% | |
| TTTCCTAACAGTATACACAT+TGG | - | chr5_1:40303441-40303460 | Msa0730610:intron | 30.0% | |
| TTCCTAACAGTATACACATT+GGG | - | chr5_1:40303442-40303461 | Msa0730610:intron | 30.0% | |
| AGATCTAGAGATCAATGAAT+TGG | + | chr5_1:40303647-40303666 | None:intergenic | 30.0% | |
| CTTAATAGTTTCTCTCATTG+TGG | - | chr5_1:40303669-40303688 | Msa0730610:intron | 30.0% | |
| !! | CATTACAAAATCGACTTGTA+AGG | + | chr5_1:40303926-40303945 | None:intergenic | 30.0% |
| ! | GATTTTGTAATGATGAGTCA+GGG | - | chr5_1:40303934-40303953 | Msa0730610:intron | 30.0% |
| CAATAACGATGTTATTGAAG+GGG | + | chr5_1:40304130-40304149 | None:intergenic | 30.0% | |
| GCAATAACGATGTTATTGAA+GGG | + | chr5_1:40304131-40304150 | None:intergenic | 30.0% | |
| AGCAATAACGATGTTATTGA+AGG | + | chr5_1:40304132-40304151 | None:intergenic | 30.0% | |
| CTAACAAATCAATCTCACTT+GGG | + | chr5_1:40304176-40304195 | None:intergenic | 30.0% | |
| TTTGTTAGGAAGCAAACAAA+TGG | - | chr5_1:40304188-40304207 | Msa0730610:intron | 30.0% | |
| GCAAACAAATGGAAAACTAA+AGG | - | chr5_1:40304199-40304218 | Msa0730610:intron | 30.0% | |
| TTGAGTGAATGATTGAGAAT+AGG | - | chr5_1:40304271-40304290 | Msa0730610:intron | 30.0% | |
| ! | AAAGTGAGTTGAAGTAGTTA+TGG | + | chr5_1:40304508-40304527 | None:intergenic | 30.0% |
| !!! | TTTTTGAGTGCTCATTTAGT+CGG | - | chr5_1:40304876-40304895 | Msa0730610:intron | 30.0% |
| !! | TTTTCTCTGTTTTCTAGTGA+AGG | - | chr5_1:40305091-40305110 | Msa0730610:intron | 30.0% |
| AATGCAATCAAATCATGCAA+TGG | + | chr5_1:40305326-40305345 | None:intergenic | 30.0% | |
| ATGATTGTAACTTCAGATCA+TGG | - | chr5_1:40305347-40305366 | Msa0730610:intron | 30.0% | |
| ACATCGCAAAATGATTAATG+TGG | - | chr5_1:40305488-40305507 | Msa0730610:intron | 30.0% | |
| CATCGCAAAATGATTAATGT+GGG | - | chr5_1:40305489-40305508 | Msa0730610:intron | 30.0% | |
| !!! | AGACAATCACTGATTTTTTC+TGG | - | chr5_1:40305563-40305582 | Msa0730610:intron | 30.0% |
| !!! | GACAATCACTGATTTTTTCT+GGG | - | chr5_1:40305564-40305583 | Msa0730610:intron | 30.0% |
| !!! | GTTTTTTGCTACAATGTTCT+CGG | - | chr5_1:40305609-40305628 | Msa0730610:intron | 30.0% |
| ! | CATCTGATTTTTCCATCTAA+TGG | + | chr5_1:40305728-40305747 | None:intergenic | 30.0% |
| ! | TCTATATTGCCTTGATCTTT+TGG | - | chr5_1:40305921-40305940 | Msa0730610:intron | 30.0% |
| TTTATCCCTATTGAACTTTC+AGG | - | chr5_1:40305997-40306016 | Msa0730610:intron | 30.0% | |
| ATGAACCTGAAAGTTCAATA+GGG | + | chr5_1:40306005-40306024 | None:intergenic | 30.0% | |
| AATGAACCTGAAAGTTCAAT+AGG | + | chr5_1:40306006-40306025 | None:intergenic | 30.0% | |
| ! | TCCGATTTGTCAATATTTGT+TGG | - | chr5_1:40306066-40306085 | Msa0730610:intron | 30.0% |
| ATTGTCATGCTTAATCTCAT+AGG | - | chr5_1:40306248-40306267 | Msa0730610:exon | 30.0% | |
| ! | TATGTAAGTTTGTGCGTTTT+TGG | - | chr5_1:40306306-40306325 | Msa0730610:five_prime_UTR | 30.0% |
| TTCGCAACAAAAAAAGATAC+TGG | + | chr5_1:40306340-40306359 | None:intergenic | 30.0% | |
| TGATATCGCTCTCTAGATTA+CGG | + | chr5_1:40301297-40301316 | None:intergenic | 35.0% | |
| GTCGGCAACAATTGAAAAAT+TGG | + | chr5_1:40301573-40301592 | None:intergenic | 35.0% | |
| ACTGGAAAATCTATGAAGCA+CGG | + | chr5_1:40301756-40301775 | None:intergenic | 35.0% | |
| AAGACCTCAACATAGAAAAC+TGG | + | chr5_1:40301774-40301793 | None:intergenic | 35.0% | |
| TCTTATCTCTGTTGAAATCG+CGG | - | chr5_1:40301935-40301954 | Msa0730610:intron | 35.0% | |
| !! | GTTGGCGTTTCCATTTTTAA+CGG | - | chr5_1:40301990-40302009 | Msa0730610:intron | 35.0% |
| CAATAGACAACATACTGTAG+TGG | - | chr5_1:40302037-40302056 | Msa0730610:CDS | 35.0% | |
| TTACTTTAGGTCCGATGTAA+TGG | - | chr5_1:40302114-40302133 | Msa0730610:intron | 35.0% | |
| CGATGTAATGGTAGTATTTG+TGG | - | chr5_1:40302126-40302145 | Msa0730610:intron | 35.0% | |
| TGTAATGGTAGTATTTGTGG+GGG | - | chr5_1:40302129-40302148 | Msa0730610:intron | 35.0% | |
| !!! | GGTGTGTCGTTTCAATTTTT+TGG | - | chr5_1:40302214-40302233 | Msa0730610:intron | 35.0% |
| ! | GAAGTGAGATTAATTTTGGG+GGG | + | chr5_1:40302618-40302637 | None:intergenic | 35.0% |
| !! | GTTATTAGGATTAGTTAGGG+TGG | + | chr5_1:40302729-40302748 | None:intergenic | 35.0% |
| !!! | CAAGATTATTTTGAAGGAGG+TGG | + | chr5_1:40302784-40302803 | None:intergenic | 35.0% |
| CAAAATAATCTTGTTCTCGG+GGG | - | chr5_1:40302791-40302810 | Msa0730610:intron | 35.0% | |
| TATCTCATTCTCAAGCAAAC+TGG | + | chr5_1:40302861-40302880 | None:intergenic | 35.0% | |
| TTTGCTTGAGAATGAGATAG+TGG | - | chr5_1:40302862-40302881 | Msa0730610:intron | 35.0% | |
| CAGAACTGTATTCTGCAAAA+TGG | + | chr5_1:40303058-40303077 | None:intergenic | 35.0% | |
| CTATGGATGTGTAACATAGA+TGG | - | chr5_1:40303114-40303133 | Msa0730610:intron | 35.0% | |
| ATCCCAATGTGTATACTGTT+AGG | + | chr5_1:40303447-40303466 | None:intergenic | 35.0% | |
| !!! | AGGTTTGATGGTGATGTTTT+GGG | + | chr5_1:40303500-40303519 | None:intergenic | 35.0% |
| AAACTCAAATGCAGGTTTGA+TGG | + | chr5_1:40303512-40303531 | None:intergenic | 35.0% | |
| CTAGAGAAAGATGAAGAACT+AGG | + | chr5_1:40303696-40303715 | None:intergenic | 35.0% | |
| ! | GAAATACCCAAGTCTTATGT+AGG | - | chr5_1:40303854-40303873 | Msa0730610:intron | 35.0% |
| ! | CGATTTTGTAATGATGAGTC+AGG | - | chr5_1:40303933-40303952 | Msa0730610:intron | 35.0% |
| CCTAACAAATCAATCTCACT+TGG | + | chr5_1:40304177-40304196 | None:intergenic | 35.0% | |
| !! | CCAAGTGAGATTGATTTGTT+AGG | - | chr5_1:40304174-40304193 | Msa0730610:intron | 35.0% |
| AGGAGAGAGATTATCTTATG+AGG | - | chr5_1:40304291-40304310 | Msa0730610:intron | 35.0% | |
| AAGGAAGTAATCCTTTGTGA+CGG | + | chr5_1:40304323-40304342 | None:intergenic | 35.0% | |
| !!! | TGCGTGCATAATGTTTTTTC+TGG | + | chr5_1:40304589-40304608 | None:intergenic | 35.0% |
| AAACATTATGCACGCAACTA+TGG | - | chr5_1:40304593-40304612 | Msa0730610:intron | 35.0% | |
| ! | GAGAAAATGATGATGTGAGA+GGG | + | chr5_1:40304826-40304845 | None:intergenic | 35.0% |
| ! | TGAGAAAATGATGATGTGAG+AGG | + | chr5_1:40304827-40304846 | None:intergenic | 35.0% |
| ! | AAATGATGATGTGAGGGAAA+GGG | + | chr5_1:40305074-40305093 | None:intergenic | 35.0% |
| ! | AAAATGATGATGTGAGGGAA+AGG | + | chr5_1:40305075-40305094 | None:intergenic | 35.0% |
| ! | CAGAGAAAATGATGATGTGA+GGG | + | chr5_1:40305080-40305099 | None:intergenic | 35.0% |
| ! | ACAGAGAAAATGATGATGTG+AGG | + | chr5_1:40305081-40305100 | None:intergenic | 35.0% |
| TAACTTCAGATCATGGTTAC+CGG | - | chr5_1:40305354-40305373 | Msa0730610:intron | 35.0% | |
| AATCAAAGCGATCAATATGG+CGG | - | chr5_1:40305536-40305555 | Msa0730610:intron | 35.0% | |
| ! | TGTTTTCATCACCCATTAGA+TGG | - | chr5_1:40305713-40305732 | Msa0730610:intron | 35.0% |
| ! | GCTGCAATTTTCTTCTTCCA+TGG | - | chr5_1:40301354-40301373 | Msa0730610:three_prime_UTR | 40.0% |
| ! | GTGAATTTGAAGCACGGATA+TGG | - | chr5_1:40301624-40301643 | Msa0730610:intron | 40.0% |
| ! | CATTTTTAACGGCGTGTACT+GGG | - | chr5_1:40302001-40302020 | Msa0730610:intron | 40.0% |
| !! | TTGGTGTTATTGGTGAAGCA+AGG | - | chr5_1:40302192-40302211 | Msa0730610:intron | 40.0% |
| !! | TGGTGTTATTGGTGAAGCAA+GGG | - | chr5_1:40302193-40302212 | Msa0730610:intron | 40.0% |
| TTAAGAGTTTGGAGGTAAGC+AGG | + | chr5_1:40302321-40302340 | None:intergenic | 40.0% | |
| TCAAGACAATCACCGGTATT+CGG | + | chr5_1:40302471-40302490 | None:intergenic | 40.0% | |
| CGTAACATCAAGACAATCAC+CGG | + | chr5_1:40302478-40302497 | None:intergenic | 40.0% | |
| GATAATTGTGTGGGTCTGAT+AGG | - | chr5_1:40303013-40303032 | Msa0730610:intron | 40.0% | |
| ! | ATCCATAGATGATTTGGGTC+TGG | + | chr5_1:40303102-40303121 | None:intergenic | 40.0% |
| TCATTGCCATAAAGCCACTT+TGG | + | chr5_1:40303151-40303170 | None:intergenic | 40.0% | |
| TACTGTAGCTGATGTTCACT+AGG | + | chr5_1:40303334-40303353 | None:intergenic | 40.0% | |
| AGTGAACATCAGCTACAGTA+TGG | - | chr5_1:40303334-40303353 | Msa0730610:intron | 40.0% | |
| GTGAACATCAGCTACAGTAT+GGG | - | chr5_1:40303335-40303354 | Msa0730610:intron | 40.0% | |
| !! | GTGATGTTTTGGGTCACAAA+GGG | + | chr5_1:40303490-40303509 | None:intergenic | 40.0% |
| !!! | CAGGTTTGATGGTGATGTTT+TGG | + | chr5_1:40303501-40303520 | None:intergenic | 40.0% |
| GCAAGATCAAACTCAAATGC+AGG | + | chr5_1:40303520-40303539 | None:intergenic | 40.0% | |
| !! | AGATAGTGGAAACTCAGCTT+AGG | + | chr5_1:40303794-40303813 | None:intergenic | 40.0% |
| !! | AAATCGACTTGTAAGGTGAG+TGG | + | chr5_1:40303919-40303938 | None:intergenic | 40.0% |
| TAGACACATTCTTGATCACC+AGG | - | chr5_1:40303986-40304005 | Msa0730610:intron | 40.0% | |
| TGAAACATGGATGAAGAAGC+AGG | + | chr5_1:40304048-40304067 | None:intergenic | 40.0% | |
| GGATCTCATAAGGGGATAAA+TGG | + | chr5_1:40304155-40304174 | None:intergenic | 40.0% | |
| TCTCACTTGGGATCTCATAA+GGG | + | chr5_1:40304164-40304183 | None:intergenic | 40.0% | |
| ATCTCACTTGGGATCTCATA+AGG | + | chr5_1:40304165-40304184 | None:intergenic | 40.0% | |
| AGGAAGTAATCCTTTGTGAC+GGG | + | chr5_1:40304322-40304341 | None:intergenic | 40.0% | |
| TTTGTGACAGGTAAGGACTA+AGG | + | chr5_1:40304385-40304404 | None:intergenic | 40.0% | |
| TTAGTCCTTACCTGTCACAA+AGG | - | chr5_1:40304384-40304403 | Msa0730610:intron | 40.0% | |
| GTAATCCTTTGTGACAGGTA+AGG | + | chr5_1:40304392-40304411 | None:intergenic | 40.0% | |
| ! | AATGATGATGTGAGAGGGAA+GGG | + | chr5_1:40304821-40304840 | None:intergenic | 40.0% |
| ! | AAATGATGATGTGAGAGGGA+AGG | + | chr5_1:40304822-40304841 | None:intergenic | 40.0% |
| !! | TTCTCACCGTTTTCTAGTGA+AGG | - | chr5_1:40304841-40304860 | Msa0730610:intron | 40.0% |
| ! | AATGATGATGTGAGGGAAAG+GGG | + | chr5_1:40305073-40305092 | None:intergenic | 40.0% |
| TGTGTTCAGGCTAAACATTG+TGG | + | chr5_1:40305269-40305288 | None:intergenic | 40.0% | |
| AGAGAGAACGCAACAATATC+AGG | + | chr5_1:40305302-40305321 | None:intergenic | 40.0% | |
| ! | TAAAAGCACAACAGTGTAGC+CGG | + | chr5_1:40305376-40305395 | None:intergenic | 40.0% |
| ! | CTTGATAGTATACTGCACGA+TGG | - | chr5_1:40305399-40305418 | Msa0730610:intron | 40.0% |
| TGGAAAAATCAGATGCCTAC+CGG | - | chr5_1:40305733-40305752 | Msa0730610:intron | 40.0% | |
| CGCTCTCTAGATTACGGTTA+TGG | + | chr5_1:40301291-40301310 | None:intergenic | 45.0% | |
| CCAGTACACGCCGTTAAAAA+TGG | + | chr5_1:40302003-40302022 | None:intergenic | 45.0% | |
| !! | CCATTTTTAACGGCGTGTAC+TGG | - | chr5_1:40302000-40302019 | Msa0730610:intron | 45.0% |
| ATGGTAGTATTTGTGGGGGA+AGG | - | chr5_1:40302133-40302152 | Msa0730610:intron | 45.0% | |
| AACTATAGCCTTCCCCTACT+CGG | + | chr5_1:40302271-40302290 | None:intergenic | 45.0% | |
| GAAGGCTATAGTTGACTGTG+TGG | - | chr5_1:40302278-40302297 | Msa0730610:intron | 45.0% | |
| ATCAAACAGGGTAGGCTTTG+TGG | - | chr5_1:40302356-40302375 | Msa0730610:intron | 45.0% | |
| TGACTTCAACACCCAAAGAG+AGG | + | chr5_1:40302382-40302401 | None:intergenic | 45.0% | |
| TTTGAAGGAGGTGGCATTGT+TGG | + | chr5_1:40302775-40302794 | None:intergenic | 45.0% | |
| TGGACCGAGCTTATGGAAAT+AGG | + | chr5_1:40302920-40302939 | None:intergenic | 45.0% | |
| CTCCAGACCCAAATCATCTA+TGG | - | chr5_1:40303097-40303116 | Msa0730610:intron | 45.0% | |
| TGGTTTCTTCCAGTCCAAAG+TGG | - | chr5_1:40303134-40303153 | Msa0730610:intron | 45.0% | |
| ! | TCCAGTCCAAAGTGGCTTTA+TGG | - | chr5_1:40303142-40303161 | Msa0730610:intron | 45.0% |
| ! | GCTGCCAATGTTGGTTAATC+TGG | - | chr5_1:40303178-40303197 | Msa0730610:intron | 45.0% |
| ! | GCCAATGTTGGTTAATCTGG+CGG | - | chr5_1:40303181-40303200 | Msa0730610:intron | 45.0% |
| TAACTGTCGGATTTCCCAGA+CGG | + | chr5_1:40303262-40303281 | None:intergenic | 45.0% | |
| TCCGACAGTTACAGTAGTTC+TGG | - | chr5_1:40303271-40303290 | Msa0730610:intron | 45.0% | |
| GCCAGAACTACTGTAACTGT+CGG | + | chr5_1:40303275-40303294 | None:intergenic | 45.0% | |
| !! | GTTACAGTAGTTCTGGCTCT+TGG | - | chr5_1:40303278-40303297 | Msa0730610:intron | 45.0% |
| GCTTCTTCACCAACCATTTC+TGG | - | chr5_1:40303392-40303411 | Msa0730610:intron | 45.0% | |
| GGATAGCATCCAGAAATGGT+TGG | + | chr5_1:40303404-40303423 | None:intergenic | 45.0% | |
| ! | GAAAGCATAGACAGAGAGAG+CGG | + | chr5_1:40303425-40303444 | None:intergenic | 45.0% |
| !! | GGTGATGTTTTGGGTCACAA+AGG | + | chr5_1:40303491-40303510 | None:intergenic | 45.0% |
| ! | TGATAAGTGATTTGGGCGTG+AGG | - | chr5_1:40303820-40303839 | Msa0730610:intron | 45.0% |
| ! | GATAAGTGATTTGGGCGTGA+GGG | - | chr5_1:40303821-40303840 | Msa0730610:intron | 45.0% |
| TACAAGATTCAGACGTAGGC+AGG | + | chr5_1:40304025-40304044 | None:intergenic | 45.0% | |
| CAGGTACAAGATTCAGACGT+AGG | + | chr5_1:40304029-40304048 | None:intergenic | 45.0% | |
| CTCACTTGGGATCTCATAAG+GGG | + | chr5_1:40304163-40304182 | None:intergenic | 45.0% | |
| TGAGGATTTACCCGTCACAA+AGG | - | chr5_1:40304309-40304328 | Msa0730610:intron | 45.0% | |
| CGGAAGTAATCCTTTGTGAC+AGG | + | chr5_1:40304397-40304416 | None:intergenic | 45.0% | |
| ! | ATGATGATGTGAGAGGGAAG+GGG | + | chr5_1:40304820-40304839 | None:intergenic | 45.0% |
| CAGCAGCCTTCACTAGAAAA+CGG | + | chr5_1:40304850-40304869 | None:intergenic | 45.0% | |
| ! | ATGATGATGTGAGGGAAAGG+GGG | + | chr5_1:40305072-40305091 | None:intergenic | 45.0% |
| GTTCATTTAGTCGGCTGATC+TGG | - | chr5_1:40305135-40305154 | Msa0730610:intron | 45.0% | |
| CTAAACATTGTGGTGCGATG+AGG | + | chr5_1:40305259-40305278 | None:intergenic | 45.0% | |
| AGGCTAAACACTGTGTGTTC+AGG | + | chr5_1:40305282-40305301 | None:intergenic | 45.0% | |
| ! | ATGTGGGTTTTTGTGTGTGC+AGG | - | chr5_1:40305505-40305524 | Msa0730610:intron | 45.0% |
| TGGGCCATTGTCAACTTCAT+AGG | - | chr5_1:40305583-40305602 | Msa0730610:intron | 45.0% | |
| CACGCCTATGAAGTTGACAA+TGG | + | chr5_1:40305590-40305609 | None:intergenic | 45.0% | |
| AAATCAGATGCCTACCGGAA+AGG | - | chr5_1:40305738-40305757 | Msa0730610:intron | 45.0% | |
| TCTTACCAGCAGAACCTTTC+CGG | + | chr5_1:40305755-40305774 | None:intergenic | 45.0% | |
| TTCCAAGCTATATGCGCACA+TGG | - | chr5_1:40306157-40306176 | Msa0730610:intron | 45.0% | |
| TCCAAGCTATATGCGCACAT+GGG | - | chr5_1:40306158-40306177 | Msa0730610:intron | 45.0% | |
| TCCATGGCTTACGTTGAACG+AGG | - | chr5_1:40301370-40301389 | Msa0730610:three_prime_UTR | 50.0% | |
| ACCTCGTTCAACGTAAGCCA+TGG | + | chr5_1:40301374-40301393 | None:intergenic | 50.0% | |
| TGAAGCACGGATATGGACAC+CGG | - | chr5_1:40301631-40301650 | Msa0730610:intron | 50.0% | |
| ! | GTGTCGGTGTAGTGTCTACA+CGG | - | chr5_1:40301714-40301733 | Msa0730610:intron | 50.0% |
| TGTCTACACGGCTAATCCGA+GGG | - | chr5_1:40301726-40301745 | Msa0730610:intron | 50.0% | |
| TATGAAGCACGGACAACCCT+CGG | + | chr5_1:40301745-40301764 | None:intergenic | 50.0% | |
| TTAAAGCTGGAGCCTGCAGA+AGG | - | chr5_1:40301854-40301873 | Msa0730610:CDS | 50.0% | |
| CAACTGACTATGCCTTCTGC+AGG | + | chr5_1:40301869-40301888 | None:intergenic | 50.0% | |
| GTAGTATTTGTGGGGGAAGG+TGG | - | chr5_1:40302136-40302155 | Msa0730610:intron | 50.0% | |
| ! | ATCTCAAGGGCATACCGAGT+AGG | - | chr5_1:40302254-40302273 | Msa0730610:intron | 50.0% |
| ! | TCTCAAGGGCATACCGAGTA+GGG | - | chr5_1:40302255-40302274 | Msa0730610:intron | 50.0% |
| ! | TAGGCTTTGTGGCCTCTCTT+TGG | - | chr5_1:40302367-40302386 | Msa0730610:intron | 50.0% |
| ! | AGGCTTTGTGGCCTCTCTTT+GGG | - | chr5_1:40302368-40302387 | Msa0730610:intron | 50.0% |
| CATCACATGGACCGAGCTTA+TGG | + | chr5_1:40302927-40302946 | None:intergenic | 50.0% | |
| ! | GCCATAAAGCCACTTTGGAC+TGG | + | chr5_1:40303146-40303165 | None:intergenic | 50.0% |
| GCTTTATGGCAATGACCTGC+TGG | - | chr5_1:40303156-40303175 | Msa0730610:intron | 50.0% | |
| GCCGCCAGATTAACCAACAT+TGG | + | chr5_1:40303185-40303204 | None:intergenic | 50.0% | |
| ! | CAGCTACAGTATGGGCATTG+TGG | - | chr5_1:40303343-40303362 | Msa0730610:intron | 50.0% |
| GAGCGGATAGCATCCAGAAA+TGG | + | chr5_1:40303408-40303427 | None:intergenic | 50.0% | |
| ! | CAAGCCTTATCCCACCAAGT+GGG | - | chr5_1:40303564-40303583 | Msa0730610:intron | 50.0% |
| ! | AAGCCTTATCCCACCAAGTG+GGG | - | chr5_1:40303565-40303584 | Msa0730610:intron | 50.0% |
| AGATTCAGACGTAGGCAGGT+TGG | + | chr5_1:40304021-40304040 | None:intergenic | 50.0% | |
| GGGGGAAATGGGATCGAAAA+AGG | + | chr5_1:40304800-40304819 | None:intergenic | 50.0% | |
| ! | TGATGATGTGAGAGGGAAGG+GGG | + | chr5_1:40304819-40304838 | None:intergenic | 50.0% |
| TCTAGTGAAGGCTGCTGATC+TGG | - | chr5_1:40304853-40304872 | Msa0730610:intron | 50.0% | |
| GGGGAAATGGGAGCGAAAAA+GGG | + | chr5_1:40305052-40305071 | None:intergenic | 50.0% | |
| ! | TGATGATGTGAGGGAAAGGG+GGG | + | chr5_1:40305071-40305090 | None:intergenic | 50.0% |
| TCTAGTGAAGGCTGCTGATC+TGG | - | chr5_1:40304853-40304872 | Msa0730610:intron | 50.0% | |
| ! | GTGGCCTTGACAATGTTCGT+GGG | - | chr5_1:40305856-40305875 | Msa0730610:intron | 50.0% |
| CTAGCCCACGAACATTGTCA+AGG | + | chr5_1:40305863-40305882 | None:intergenic | 50.0% | |
| ACTCACTGTGATCACGTCCA+CGG | + | chr5_1:40305893-40305912 | None:intergenic | 50.0% | |
| TCAGGTTCATTGCCTGCATG+CGG | - | chr5_1:40306015-40306034 | Msa0730610:intron | 50.0% | |
| ACCCATGTGCGCATATAGCT+TGG | + | chr5_1:40306162-40306181 | None:intergenic | 50.0% | |
| !! | CAGTGTCGGCATGTCATTGC+CGG | + | chr5_1:40301653-40301672 | None:intergenic | 55.0% |
| GTGTCTACACGGCTAATCCG+AGG | - | chr5_1:40301725-40301744 | Msa0730610:intron | 55.0% | |
| ! | CTCAAGGGCATACCGAGTAG+GGG | - | chr5_1:40302256-40302275 | Msa0730610:intron | 55.0% |
| AACCAACATTGGCAGCCAGC+AGG | + | chr5_1:40303174-40303193 | None:intergenic | 55.0% | |
| GGTTAATCTGGCGGCTCCAA+TGG | - | chr5_1:40303190-40303209 | Msa0730610:intron | 55.0% | |
| TAATCTGGCGGCTCCAATGG+TGG | - | chr5_1:40303193-40303212 | Msa0730610:intron | 55.0% | |
| ! | CCACTTGGTGGGATAAGGCT+TGG | + | chr5_1:40303566-40303585 | None:intergenic | 55.0% |
| ! | CCAAGCCTTATCCCACCAAG+TGG | - | chr5_1:40303563-40303582 | Msa0730610:intron | 55.0% |
| TGTAGTCGACCCCACTTGGT+GGG | + | chr5_1:40303577-40303596 | None:intergenic | 55.0% | |
| ATGTAGTCGACCCCACTTGG+TGG | + | chr5_1:40303578-40303597 | None:intergenic | 55.0% | |
| ACCAAGTGGGGTCGACTACA+TGG | - | chr5_1:40303577-40303596 | Msa0730610:intron | 55.0% | |
| TCCATGTAGTCGACCCCACT+TGG | + | chr5_1:40303581-40303600 | None:intergenic | 55.0% | |
| ! | TTCAGACGTAGGCAGGTTGG+AGG | + | chr5_1:40304018-40304037 | None:intergenic | 55.0% |
| TGAGAGGGAAGGGGGGAAAT+GGG | + | chr5_1:40304811-40304830 | None:intergenic | 55.0% | |
| GATGATGTGAGAGGGAAGGG+GGG | + | chr5_1:40304818-40304837 | None:intergenic | 55.0% | |
| GGGGGAAATGGGAGCGAAAA+AGG | + | chr5_1:40305053-40305072 | None:intergenic | 55.0% | |
| GTGAGGGAAAGGGGGGAAAT+GGG | + | chr5_1:40305064-40305083 | None:intergenic | 55.0% | |
| TGTGAGGGAAAGGGGGGAAA+TGG | + | chr5_1:40305065-40305084 | None:intergenic | 55.0% | |
| ACCAGCAGAACCTTTCCGGT+AGG | + | chr5_1:40305751-40305770 | None:intergenic | 55.0% | |
| !! | ACCATATGGTGGTGGTCCTC+CGG | - | chr5_1:40305821-40305840 | Msa0730610:intron | 55.0% |
| ACATTGTCAAGGCCACCACG+AGG | + | chr5_1:40305852-40305871 | None:intergenic | 55.0% | |
| ! | GGTGGCCTTGACAATGTTCG+TGG | - | chr5_1:40305855-40305874 | Msa0730610:intron | 55.0% |
| !! | CGTGGGCTAGATAGTATCCG+TGG | - | chr5_1:40305873-40305892 | Msa0730610:intron | 55.0% |
| AGGGCATACCGAGTAGGGGA+AGG | - | chr5_1:40302260-40302279 | Msa0730610:intron | 60.0% | |
| ! | GACCTGCTGGCTGCCAATGT+TGG | - | chr5_1:40303169-40303188 | Msa0730610:intron | 60.0% |
| AACCATGCCCCAGCCACCAT+TGG | + | chr5_1:40303209-40303228 | None:intergenic | 60.0% | |
| AATGGTGGCTGGGGCATGGT+TGG | - | chr5_1:40303208-40303227 | Msa0730610:intron | 60.0% | |
| TTATGTCCACAGCCGCCGTC+TGG | - | chr5_1:40303244-40303263 | Msa0730610:intron | 60.0% | |
| TATGTCCACAGCCGCCGTCT+GGG | - | chr5_1:40303245-40303264 | Msa0730610:intron | 60.0% | |
| CTGTCGGATTTCCCAGACGG+CGG | + | chr5_1:40303259-40303278 | None:intergenic | 60.0% | |
| ! | CGACCCCACTTGGTGGGATA+AGG | + | chr5_1:40303571-40303590 | None:intergenic | 60.0% |
| ! | TTGGGCGTGAGGGTGTGTAC+TGG | - | chr5_1:40303831-40303850 | Msa0730610:intron | 60.0% |
| ! | TGGGCGTGAGGGTGTGTACT+GGG | - | chr5_1:40303832-40303851 | Msa0730610:intron | 60.0% |
| ! | AGACGTAGGCAGGTTGGAGG+TGG | + | chr5_1:40304015-40304034 | None:intergenic | 60.0% |
| GTGAGAGGGAAGGGGGGAAA+TGG | + | chr5_1:40304812-40304831 | None:intergenic | 60.0% | |
| GCCTACCGGAAAGGTTCTGC+TGG | - | chr5_1:40305747-40305766 | Msa0730610:intron | 60.0% | |
| !! | CCATATGGTGGTGGTCCTCC+GGG | - | chr5_1:40305822-40305841 | Msa0730610:intron | 60.0% |
| TGTCAAGGCCACCACGAGGA+GGG | + | chr5_1:40305848-40305867 | None:intergenic | 60.0% | |
| TTGTCAAGGCCACCACGAGG+AGG | + | chr5_1:40305849-40305868 | None:intergenic | 60.0% | |
| TGGCGGCTCCAATGGTGGCT+GGG | - | chr5_1:40303198-40303217 | Msa0730610:intron | 65.0% | |
| CTCCAATGGTGGCTGGGGCA+TGG | - | chr5_1:40303204-40303223 | Msa0730610:intron | 65.0% | |
| GATTTCCCAGACGGCGGCTG+TGG | + | chr5_1:40303253-40303272 | None:intergenic | 65.0% | |
| ! | GCAGGTTGGAGGTGGCAACC+TGG | + | chr5_1:40304007-40304026 | None:intergenic | 65.0% |
| TATGGCGGTGGAGGTCCTGG+TGG | - | chr5_1:40305777-40305796 | Msa0730610:intron | 65.0% | |
| !! | GGTGGTGGGGGACCATATGG+TGG | - | chr5_1:40305810-40305829 | Msa0730610:intron | 65.0% |
| GGTGGGGGACCATATGGTGG+TGG | - | chr5_1:40305813-40305832 | Msa0730610:intron | 65.0% | |
| CCCGGAGGACCACCACCATA+TGG | + | chr5_1:40305825-40305844 | None:intergenic | 65.0% | |
| CCACAGCATGAGCCGCATGC+AGG | + | chr5_1:40306030-40306049 | None:intergenic | 65.0% | |
| CCTGCATGCGGCTCATGCTG+TGG | - | chr5_1:40306027-40306046 | Msa0730610:intron | 65.0% | |
| CTGGCGGCTCCAATGGTGGC+TGG | - | chr5_1:40303197-40303216 | Msa0730610:intron | 70.0% | |
| GGCGGCTCCAATGGTGGCTG+GGG | - | chr5_1:40303199-40303218 | Msa0730610:intron | 70.0% | |
| !! | GGTGGAGGTCCTGGTGGTGG+TGG | - | chr5_1:40305783-40305802 | Msa0730610:intron | 70.0% |
| !! | GGAGGTCCTGGTGGTGGTGG+TGG | - | chr5_1:40305786-40305805 | Msa0730610:intron | 70.0% |
| !! | GGTCCTGGTGGTGGTGGTGG+CGG | - | chr5_1:40305789-40305808 | Msa0730610:intron | 70.0% |
| !! | GTGGTGGTGGTGGCGGTGGT+GGG | - | chr5_1:40305796-40305815 | Msa0730610:intron | 70.0% |
| !! | TGGTGGTGGTGGCGGTGGTG+GGG | - | chr5_1:40305797-40305816 | Msa0730610:intron | 70.0% |
| !! | GGCGGTGGTGGGGGACCATA+TGG | - | chr5_1:40305807-40305826 | Msa0730610:intron | 70.0% |
| GGCGGTGGAGGTCCTGGTGG+TGG | - | chr5_1:40305780-40305799 | Msa0730610:intron | 75.0% | |
| CCACCGCCACCACCACCACC+AGG | + | chr5_1:40305795-40305814 | None:intergenic | 75.0% | |
| !! | CCTGGTGGTGGTGGTGGCGG+TGG | - | chr5_1:40305792-40305811 | Msa0730610:intron | 75.0% |
| !! | GGTGGTGGTGGTGGCGGTGG+TGG | - | chr5_1:40305795-40305814 | Msa0730610:intron | 75.0% |
| !! | GGTGGTGGTGGCGGTGGTGG+GGG | - | chr5_1:40305798-40305817 | Msa0730610:intron | 75.0% |
| AGGCCACCACGAGGAGGGCC+CGG | + | chr5_1:40305843-40305862 | None:intergenic | 75.0% | |
| ! | GGTCCTCCGGGCCCTCCTCG+TGG | - | chr5_1:40305834-40305853 | Msa0730610:intron | 80.0% |
| ! | CCACCACGAGGAGGGCCCGG+AGG | + | chr5_1:40305840-40305859 | None:intergenic | 80.0% |
| ! | CCTCCGGGCCCTCCTCGTGG+TGG | - | chr5_1:40305837-40305856 | Msa0730610:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 40301275 | 40306361 | 40301275 | ID=Msa0730610;Name=Msa0730610 |
| chr5_1 | mRNA | 40301275 | 40306361 | 40301275 | ID=Msa0730610-mRNA-1;Parent=Msa0730610;Name=Msa0730610-mRNA-1;_AED=0.05;_eAED=0.05;_QI=98|1|1|1|0.66|0.75|4|308|110 |
| chr5_1 | exon | 40301275 | 40301617 | 40301275 | ID=Msa0730610-mRNA-1:exon:11774;Parent=Msa0730610-mRNA-1 |
| chr5_1 | exon | 40301730 | 40301904 | 40301730 | ID=Msa0730610-mRNA-1:exon:11773;Parent=Msa0730610-mRNA-1 |
| chr5_1 | exon | 40302006 | 40302109 | 40302006 | ID=Msa0730610-mRNA-1:exon:11772;Parent=Msa0730610-mRNA-1 |
| chr5_1 | exon | 40306245 | 40306361 | 40306245 | ID=Msa0730610-mRNA-1:exon:11771;Parent=Msa0730610-mRNA-1 |
| chr5_1 | five_prime_UTR | 40306264 | 40306361 | 40306264 | ID=Msa0730610-mRNA-1:five_prime_utr;Parent=Msa0730610-mRNA-1 |
| chr5_1 | CDS | 40306245 | 40306263 | 40306245 | ID=Msa0730610-mRNA-1:cds;Parent=Msa0730610-mRNA-1 |
| chr5_1 | CDS | 40302006 | 40302109 | 40302006 | ID=Msa0730610-mRNA-1:cds;Parent=Msa0730610-mRNA-1 |
| chr5_1 | CDS | 40301730 | 40301904 | 40301730 | ID=Msa0730610-mRNA-1:cds;Parent=Msa0730610-mRNA-1 |
| chr5_1 | CDS | 40301583 | 40301617 | 40301583 | ID=Msa0730610-mRNA-1:cds;Parent=Msa0730610-mRNA-1 |
| chr5_1 | three_prime_UTR | 40301275 | 40301582 | 40301275 | ID=Msa0730610-mRNA-1:three_prime_utr;Parent=Msa0730610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
