Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0810750 | XP_003618715.1 | 83.516 | 91 | 15 | 0 | 1 | 91 | 1 | 91 | 4.66e-32 | 135 |
| Msa0810750 | XP_003618715.1 | 84.878 | 205 | 22 | 2 | 119 | 315 | 279 | 482 | 3.29e-112 | 344 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0810750 | sp|Q5XVC4|MDP60_ARATH | 64.948 | 194 | 56 | 3 | 132 | 314 | 288 | 480 | 9.52e-79 | 251 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0810750 | G7KMP3 | 83.516 | 91 | 15 | 0 | 1 | 91 | 1 | 91 | 2.23e-32 | 135 |
| Msa0810750 | G7KMP3 | 84.878 | 205 | 22 | 2 | 119 | 315 | 279 | 482 | 1.57e-112 | 344 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0735170 | Msa0810750 | 0.801493 | 8.774973e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0810750 | MtrunA17_Chr6g0454541 | 84.878 | 205 | 22 | 2 | 119 | 315 | 279 | 482 | 3.03e-116 | 344 |
| Msa0810750 | MtrunA17_Chr6g0454541 | 83.516 | 91 | 15 | 0 | 1 | 91 | 1 | 91 | 4.29e-36 | 135 |
| Msa0810750 | MtrunA17_Chr7g0218721 | 61.616 | 198 | 58 | 4 | 132 | 315 | 261 | 454 | 2.89e-74 | 235 |
| Msa0810750 | MtrunA17_Chr3g0109961 | 48.624 | 109 | 54 | 1 | 207 | 315 | 57 | 163 | 1.62e-26 | 102 |
| Msa0810750 | MtrunA17_Chr4g0051971 | 46.789 | 109 | 56 | 1 | 207 | 315 | 17 | 123 | 4.23e-25 | 98.2 |
| Msa0810750 | MtrunA17_Chr4g0040361 | 33.333 | 111 | 69 | 3 | 199 | 305 | 629 | 738 | 6.84e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0810750 | AT5G15510.1 | 51.456 | 309 | 106 | 7 | 19 | 315 | 212 | 488 | 3.46e-87 | 270 |
| Msa0810750 | AT3G01015.1 | 64.948 | 194 | 56 | 3 | 132 | 314 | 288 | 480 | 9.68e-80 | 251 |
| Msa0810750 | AT5G15510.4 | 51.095 | 274 | 90 | 7 | 19 | 280 | 212 | 453 | 8.57e-72 | 229 |
| Msa0810750 | AT5G15510.3 | 51.095 | 274 | 90 | 7 | 19 | 280 | 212 | 453 | 8.57e-72 | 229 |
| Msa0810750 | AT5G15510.2 | 51.095 | 274 | 90 | 7 | 19 | 280 | 212 | 453 | 6.16e-71 | 229 |
| Msa0810750 | AT5G37478.4 | 52.874 | 87 | 41 | 0 | 207 | 293 | 46 | 132 | 7.38e-24 | 95.9 |
| Msa0810750 | AT5G37478.1 | 52.874 | 87 | 41 | 0 | 207 | 293 | 66 | 152 | 1.33e-23 | 95.9 |
| Msa0810750 | AT5G37478.2 | 52.874 | 87 | 41 | 0 | 207 | 293 | 33 | 119 | 2.07e-23 | 94.4 |
| Msa0810750 | AT1G03780.3 | 33.721 | 86 | 57 | 0 | 210 | 295 | 646 | 731 | 8.11e-12 | 66.6 |
| Msa0810750 | AT1G03780.2 | 33.721 | 86 | 57 | 0 | 210 | 295 | 646 | 731 | 8.59e-12 | 66.2 |
| Msa0810750 | AT5G44270.1 | 34.940 | 83 | 54 | 0 | 213 | 295 | 210 | 292 | 8.84e-11 | 62.4 |
Find 76 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATGTTACTTGGTATAAAA+AGG | 0.189121 | 5_3:-39621394 | Msa0810750:CDS |
| TCCAAGGGTTTCTTCTTATC+TGG | 0.253704 | 5_3:+39621710 | None:intergenic |
| TAAGGCATTGGCTGCGCTTT+AGG | 0.259331 | 5_3:+39618797 | None:intergenic |
| GTGAATCTGGTGTGCTCTAT+TGG | 0.279798 | 5_3:-39618096 | Msa0810750:three_prime_UTR |
| TTTCGATTAGAAAACTCATT+AGG | 0.285358 | 5_3:+39621671 | None:intergenic |
| GTTGACTGATTTGCTATGTT+AGG | 0.286572 | 5_3:-39618054 | Msa0810750:three_prime_UTR |
| ATGAATGGTCTGTCAAAATA+AGG | 0.316056 | 5_3:+39618779 | None:intergenic |
| TCACATAAGCAAATGACTTC+TGG | 0.318774 | 5_3:+39618302 | None:intergenic |
| TTTGGTTCTCTTGGTATAGT+TGG | 0.328622 | 5_3:+39618406 | None:intergenic |
| AGGAATGGTGTACCTGAAAA+TGG | 0.330943 | 5_3:-39621446 | Msa0810750:CDS |
| TTATTCGACGATTTCTGAAA+TGG | 0.335282 | 5_3:+39621647 | None:intergenic |
| AGAGAATGAGAAGAAGAATA+AGG | 0.338941 | 5_3:-39621345 | Msa0810750:intron |
| TTCGATTAGAAAACTCATTA+GGG | 0.343147 | 5_3:+39621672 | None:intergenic |
| CTGGTGTGCTCTATTGGTGC+TGG | 0.349619 | 5_3:-39618090 | Msa0810750:three_prime_UTR |
| TTGACTGATTTGCTATGTTA+GGG | 0.359898 | 5_3:-39618053 | Msa0810750:three_prime_UTR |
| CATGGAAGACCTTGTGCAAT+AGG | 0.364761 | 5_3:+39619990 | None:intergenic |
| ATTGGTGCTGGGAGGTGGTT+TGG | 0.370334 | 5_3:-39618078 | Msa0810750:three_prime_UTR |
| TGTCGCGCCTGTGGTGAATC+TGG | 0.373354 | 5_3:-39618109 | Msa0810750:three_prime_UTR |
| TTGGAATCATCTAGTACTAT+TGG | 0.398723 | 5_3:-39620258 | Msa0810750:CDS |
| AGAACAACAGAAAAGGGAAT+TGG | 0.400583 | 5_3:-39618984 | Msa0810750:CDS |
| AGGAAGAGATTAGGAGATTG+AGG | 0.413621 | 5_3:-39618832 | Msa0810750:CDS |
| CATTACCTCGTTGGAATGAA+TGG | 0.424164 | 5_3:+39618764 | None:intergenic |
| ATGTGAAACTTTGGTTCTCT+TGG | 0.432261 | 5_3:+39618397 | None:intergenic |
| GCTCTATTGGTGCTGGGAGG+TGG | 0.446653 | 5_3:-39618083 | Msa0810750:three_prime_UTR |
| TCGCGCGGAATTTGATCATC+AGG | 0.446879 | 5_3:-39619111 | Msa0810750:intron |
| GACAGAGAGGAATGAGGATG+AGG | 0.454022 | 5_3:-39621369 | Msa0810750:CDS |
| ACCTCAGTCCTTAGCTTGAA+AGG | 0.454283 | 5_3:+39620186 | None:intergenic |
| TGGTTTGAGCGGATAGTGTT+TGG | 0.455843 | 5_3:-39618163 | Msa0810750:intron |
| TATTCGACGATTTCTGAAAT+GGG | 0.458747 | 5_3:+39621648 | None:intergenic |
| GGAATTGGAAATACAACAAA+AGG | 0.463028 | 5_3:-39618969 | Msa0810750:intron |
| AATTCGTCAGAGAAAGTTTG+TGG | 0.464214 | 5_3:-39621576 | Msa0810750:CDS |
| TGCTGAGGTATGTGAAACTT+TGG | 0.473057 | 5_3:+39618388 | None:intergenic |
| TTTGATAGAACAACAGAAAA+GGG | 0.474688 | 5_3:-39618990 | Msa0810750:CDS |
| TGGCTGAAGAGGAAGAGATT+AGG | 0.480404 | 5_3:-39618841 | Msa0810750:CDS |
| GTTTGATAGAACAACAGAAA+AGG | 0.481566 | 5_3:-39618991 | Msa0810750:CDS |
| TCCCTTACAGTTGGCTGAAG+AGG | 0.485828 | 5_3:-39618852 | Msa0810750:intron |
| GAAGCTTCATAGTGATTTGA+GGG | 0.498697 | 5_3:-39619141 | Msa0810750:CDS |
| GTTCAAATTCTCAATTTCCA+AGG | 0.500670 | 5_3:+39621694 | None:intergenic |
| GTACTATTGGAGGAAGGAGG+TGG | 0.500694 | 5_3:-39620245 | Msa0810750:CDS |
| AGAGATTAGGAGATTGAGGA+AGG | 0.500982 | 5_3:-39618828 | Msa0810750:CDS |
| AGAAGAACAGTTGATGAAGA+AGG | 0.503039 | 5_3:-39620051 | Msa0810750:CDS |
| TGAAGCTTCATAGTGATTTG+AGG | 0.503817 | 5_3:-39619142 | Msa0810750:CDS |
| TTCAAATTCTCAATTTCCAA+GGG | 0.511479 | 5_3:+39621695 | None:intergenic |
| AAATGGTAAAGTAATGCATT+TGG | 0.516438 | 5_3:-39621429 | Msa0810750:CDS |
| TTGATCAATCATTACCTCGT+TGG | 0.518913 | 5_3:+39618755 | None:intergenic |
| GACTGATTTGCTATGTTAGG+GGG | 0.520842 | 5_3:-39618051 | Msa0810750:three_prime_UTR |
| CTATTGCACAAGGTCTTCCA+TGG | 0.526302 | 5_3:-39619989 | Msa0810750:CDS |
| TGGTGTGCTCTATTGGTGCT+GGG | 0.528710 | 5_3:-39618089 | Msa0810750:three_prime_UTR |
| GTCAGAAACCTTTCAAGCTA+AGG | 0.529285 | 5_3:-39620194 | Msa0810750:CDS |
| TAAAGTAATGCATTTGGTGA+AGG | 0.534433 | 5_3:-39621423 | Msa0810750:CDS |
| CTCTGACGAATTATCTTCTG+CGG | 0.534478 | 5_3:+39621587 | None:intergenic |
| AAGGGAGACAGAGAGGAATG+AGG | 0.535082 | 5_3:-39621375 | Msa0810750:CDS |
| TGATCAAAGTCCTAAGAAAA+CGG | 0.535593 | 5_3:-39621534 | Msa0810750:CDS |
| CGCGACAGATCAAAACCAGC+AGG | 0.538025 | 5_3:+39618125 | None:intergenic |
| ACCAGATAAGAAGAAACCCT+TGG | 0.550621 | 5_3:-39621711 | Msa0810750:CDS |
| GAATCATCTAGTACTATTGG+AGG | 0.568710 | 5_3:-39620255 | Msa0810750:CDS |
| TAAGTGTGTTTGCGAAGCAA+TGG | 0.571703 | 5_3:-39621477 | Msa0810750:CDS |
| TCAGGTTCATCAATAGTCCA+TGG | 0.571822 | 5_3:+39619972 | None:intergenic |
| ACTGATTTGCTATGTTAGGG+GGG | 0.577232 | 5_3:-39618050 | Msa0810750:three_prime_UTR |
| GGTCTGTCAAAATAAGGCAT+TGG | 0.582294 | 5_3:+39618785 | None:intergenic |
| CTATGAAGCTTCACATCAGT+AGG | 0.585116 | 5_3:+39619152 | None:intergenic |
| TGACTGATTTGCTATGTTAG+GGG | 0.593066 | 5_3:-39618052 | Msa0810750:three_prime_UTR |
| CATCTAGTACTATTGGAGGA+AGG | 0.619078 | 5_3:-39620251 | Msa0810750:CDS |
| AAATGTGGAGAGAATAGTGA+TGG | 0.619254 | 5_3:-39621503 | Msa0810750:CDS |
| CACTTGATCTGCTTATGCTG+AGG | 0.630172 | 5_3:+39618373 | None:intergenic |
| GCAATGGAAGAAACAAGGAA+TGG | 0.646394 | 5_3:-39621461 | Msa0810750:CDS |
| GCGAAGCAATGGAAGAAACA+AGG | 0.647299 | 5_3:-39621466 | Msa0810750:CDS |
| CTAGTACTATTGGAGGAAGG+AGG | 0.649542 | 5_3:-39620248 | Msa0810750:CDS |
| TTTGAGGGCAATTGATCGCG+CGG | 0.653049 | 5_3:-39619126 | Msa0810750:CDS |
| ATGGACTATTGATGAACCTG+AGG | 0.663121 | 5_3:-39619970 | Msa0810750:intron |
| GAGCACACCAGATTCACCAC+AGG | 0.666574 | 5_3:+39618102 | None:intergenic |
| ACCTTTCAAGCTAAGGACTG+AGG | 0.672965 | 5_3:-39620187 | Msa0810750:intron |
| TGTGCTCTATTGGTGCTGGG+AGG | 0.679479 | 5_3:-39618086 | Msa0810750:three_prime_UTR |
| ATGAGAGTACCTATTGCACA+AGG | 0.699289 | 5_3:-39619999 | Msa0810750:CDS |
| ATAATGCTATTGTAGCAAAG+GGG | 0.728973 | 5_3:-39620083 | Msa0810750:intron |
| ACAGACCATTCATTCCAACG+AGG | 0.804126 | 5_3:-39618769 | Msa0810750:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTAGCATTATTTTTGTTT+TGG | + | chr5_3:39618665-39618684 | None:intergenic | 15.0% |
| !!! | TAATTGATGATACAAATAAT+TGG | - | chr5_3:39619591-39619610 | Msa0810750:intron | 15.0% |
| !! | TTAAAAATTCTTTACATTGA+CGG | - | chr5_3:39620157-39620176 | Msa0810750:intron | 15.0% |
| !! | AATAATGAGACAAAAAATAA+TGG | + | chr5_3:39621300-39621319 | None:intergenic | 15.0% |
| !!! | TTTGTCTCATTATTATATTT+TGG | - | chr5_3:39621306-39621325 | Msa0810750:intron | 15.0% |
| !!! | ATTATTATATTTTGGTTTGA+AGG | - | chr5_3:39621314-39621333 | Msa0810750:intron | 15.0% |
| !!! | ATGTATGTATAAGTATTTTG+TGG | + | chr5_3:39618733-39618752 | None:intergenic | 20.0% |
| !!! | TCAATGAATTTTGCTTATTT+TGG | - | chr5_3:39618833-39618852 | Msa0810750:CDS | 20.0% |
| !!! | CAATGAATTTTGCTTATTTT+GGG | - | chr5_3:39618834-39618853 | Msa0810750:CDS | 20.0% |
| !!! | CTAGATTTTAAGATTTAAGT+CGG | - | chr5_3:39618905-39618924 | Msa0810750:intron | 20.0% |
| !!! | TAGATTTTAAGATTTAAGTC+GGG | - | chr5_3:39618906-39618925 | Msa0810750:intron | 20.0% |
| !!! | TCATTTTTGCAAAATGTTAT+CGG | - | chr5_3:39619350-39619369 | Msa0810750:intron | 20.0% |
| !! | ACTATAATACTAATGAAGAT+TGG | - | chr5_3:39619411-39619430 | Msa0810750:intron | 20.0% |
| !! | AAAACTTTCAGTTTATTTGA+TGG | - | chr5_3:39620116-39620135 | Msa0810750:intron | 20.0% |
| !! | CAAATTTATCATAATTCTGT+TGG | - | chr5_3:39620522-39620541 | Msa0810750:intron | 20.0% |
| !!! | TTTGTAATATTTTCTAAGAG+TGG | + | chr5_3:39621037-39621056 | None:intergenic | 20.0% |
| !! | AGAAATATTCAACTTGTATA+TGG | - | chr5_3:39621478-39621497 | Msa0810750:CDS | 20.0% |
| !! | AAATTGATACAACTGATTAA+AGG | + | chr5_3:39621536-39621555 | None:intergenic | 20.0% |
| !! | TTTAATCAGTTGTATCAATT+TGG | - | chr5_3:39621535-39621554 | Msa0810750:CDS | 20.0% |
| ! | TTCAAATTCTCAATTTCCAA+GGG | + | chr5_3:39618063-39618082 | None:intergenic | 25.0% |
| ! | TTCGATTAGAAAACTCATTA+GGG | + | chr5_3:39618086-39618105 | None:intergenic | 25.0% |
| ! | TTTCGATTAGAAAACTCATT+AGG | + | chr5_3:39618087-39618106 | None:intergenic | 25.0% |
| ! | AAATGGTAAAGTAATGCATT+TGG | - | chr5_3:39618326-39618345 | Msa0810750:exon | 25.0% |
| !! | AGATGTTACTTGGTATAAAA+AGG | - | chr5_3:39618361-39618380 | Msa0810750:CDS | 25.0% |
| !! | GATGTTACTTGGTATAAAAA+GGG | - | chr5_3:39618362-39618381 | Msa0810750:CDS | 25.0% |
| ! | CGACTTAAATCTTAAAATCT+AGG | + | chr5_3:39618907-39618926 | None:intergenic | 25.0% |
| ! | TTAGCGATTCACTATTAATA+AGG | - | chr5_3:39619434-39619453 | Msa0810750:intron | 25.0% |
| !!! | AGTTTCTTCAAATTTTTCAG+TGG | - | chr5_3:39619627-39619646 | Msa0810750:intron | 25.0% |
| !!! | AAATTTTTCAGTGGCTATAT+TGG | - | chr5_3:39619636-39619655 | Msa0810750:intron | 25.0% |
| ! | TATAATGCTATTGTAGCAAA+GGG | - | chr5_3:39619671-39619690 | Msa0810750:intron | 25.0% |
| !!! | GTAATTTGTTAATCAAGCAT+AGG | - | chr5_3:39619908-39619927 | Msa0810750:intron | 25.0% |
| ! | ATGCTAGGATATTAGATATA+AGG | + | chr5_3:39620262-39620281 | None:intergenic | 25.0% |
| ! | ATAGCAATTCTCAATTAGAA+CGG | - | chr5_3:39620296-39620315 | Msa0810750:intron | 25.0% |
| ! | TCATGATGTGTAAAACTAAA+GGG | + | chr5_3:39620696-39620715 | None:intergenic | 25.0% |
| ! | TTCATGATGTGTAAAACTAA+AGG | + | chr5_3:39620697-39620716 | None:intergenic | 25.0% |
| ! | TTTGATAGAACAACAGAAAA+GGG | - | chr5_3:39620765-39620784 | Msa0810750:intron | 25.0% |
| !!! | GTATGTTTTTAACAGTTTCT+TGG | - | chr5_3:39621062-39621081 | Msa0810750:intron | 25.0% |
| !!! | TGGCATATCATTTTTTGATT+CGG | - | chr5_3:39621082-39621101 | Msa0810750:intron | 25.0% |
| !!! | TTTAAAGTTGATTTGACGAA+AGG | - | chr5_3:39621185-39621204 | Msa0810750:intron | 25.0% |
| !!! | GTCATTGATTTGAAATCAAT+TGG | + | chr5_3:39621222-39621241 | None:intergenic | 25.0% |
| ! | ATACACACTTTAATTGATCT+TGG | + | chr5_3:39621244-39621263 | None:intergenic | 25.0% |
| !! | GCAATAGTATTTGCAAATTT+TGG | - | chr5_3:39621505-39621524 | Msa0810750:CDS | 25.0% |
| GTTCAAATTCTCAATTTCCA+AGG | + | chr5_3:39618064-39618083 | None:intergenic | 30.0% | |
| !! | TATTCGACGATTTCTGAAAT+GGG | + | chr5_3:39618110-39618129 | None:intergenic | 30.0% |
| ! | TTATTCGACGATTTCTGAAA+TGG | + | chr5_3:39618111-39618130 | None:intergenic | 30.0% |
| TGATCAAAGTCCTAAGAAAA+CGG | - | chr5_3:39618221-39618240 | Msa0810750:intron | 30.0% | |
| ! | TTACACAAAACCGTTTTCTT+AGG | + | chr5_3:39618234-39618253 | None:intergenic | 30.0% |
| !! | AAAACGGTTTTGTGTAAATG+TGG | - | chr5_3:39618237-39618256 | Msa0810750:intron | 30.0% |
| ! | TGCATTACTTTACCATTTTC+AGG | + | chr5_3:39618324-39618343 | None:intergenic | 30.0% |
| ! | TAAAGTAATGCATTTGGTGA+AGG | - | chr5_3:39618332-39618351 | Msa0810750:CDS | 30.0% |
| !!! | AAGGATTTTGAGATGTTACT+TGG | - | chr5_3:39618351-39618370 | Msa0810750:CDS | 30.0% |
| AGAGAATGAGAAGAAGAATA+AGG | - | chr5_3:39618410-39618429 | Msa0810750:CDS | 30.0% | |
| ACAGTCAAGGTTGTAAAAAT+CGG | - | chr5_3:39618501-39618520 | Msa0810750:intron | 30.0% | |
| AAAATCGCAATCAAAATCGA+AGG | - | chr5_3:39618568-39618587 | Msa0810750:intron | 30.0% | |
| AAAATCGCAATCAAAATCGA+TGG | - | chr5_3:39618568-39618587 | Msa0810750:intron | 30.0% | |
| ! | CAAAATCGCAGGATTTTAAA+GGG | + | chr5_3:39618786-39618805 | None:intergenic | 30.0% |
| ! | ACAAAATCGCAGGATTTTAA+AGG | + | chr5_3:39618787-39618806 | None:intergenic | 30.0% |
| !!! | CTTATTTTGGGATTCTACTA+TGG | - | chr5_3:39618846-39618865 | Msa0810750:intron | 30.0% |
| TGGTTACATTTACATCTTCT+TGG | - | chr5_3:39618942-39618961 | Msa0810750:intron | 30.0% | |
| GGTTACATTTACATCTTCTT+GGG | - | chr5_3:39618943-39618962 | Msa0810750:intron | 30.0% | |
| ACATGTGATGTAATGAACAT+TGG | - | chr5_3:39619321-39619340 | Msa0810750:intron | 30.0% | |
| !!! | TTTCTGTGTTTTTTAGAGCT+TGG | - | chr5_3:39619478-39619497 | Msa0810750:intron | 30.0% |
| TTGGAATCATCTAGTACTAT+TGG | - | chr5_3:39619497-39619516 | Msa0810750:intron | 30.0% | |
| CTATAATGCTATTGTAGCAA+AGG | - | chr5_3:39619670-39619689 | Msa0810750:intron | 30.0% | |
| ATAATGCTATTGTAGCAAAG+GGG | - | chr5_3:39619672-39619691 | Msa0810750:intron | 30.0% | |
| AGCATATACACTTCAAACTA+AGG | + | chr5_3:39619834-39619853 | None:intergenic | 30.0% | |
| TAACAACTCACAGTCAAATT+TGG | - | chr5_3:39619857-39619876 | Msa0810750:intron | 30.0% | |
| TCGTAATTGCATTACATGAT+GGG | + | chr5_3:39619977-39619996 | None:intergenic | 30.0% | |
| ATCGTAATTGCATTACATGA+TGG | + | chr5_3:39619978-39619997 | None:intergenic | 30.0% | |
| TTACGATTATAGCTTATGTC+TGG | - | chr5_3:39619991-39620010 | Msa0810750:CDS | 30.0% | |
| GAATTAAATCTGTGAGTAGT+TGG | - | chr5_3:39620187-39620206 | Msa0810750:intron | 30.0% | |
| TCTAATATCCTAGCATAACA+TGG | - | chr5_3:39620266-39620285 | Msa0810750:intron | 30.0% | |
| ! | TGGAGTAAATTTAGTTTCAG+TGG | - | chr5_3:39620430-39620449 | Msa0810750:intron | 30.0% |
| CATGATGTGTAAAACTAAAG+GGG | + | chr5_3:39620695-39620714 | None:intergenic | 30.0% | |
| GTTTGATAGAACAACAGAAA+AGG | - | chr5_3:39620764-39620783 | Msa0810750:intron | 30.0% | |
| GGAATTGGAAATACAACAAA+AGG | - | chr5_3:39620786-39620805 | Msa0810750:intron | 30.0% | |
| AAACATGGCAACTCAAAATT+AGG | + | chr5_3:39620851-39620870 | None:intergenic | 30.0% | |
| ! | CTTTTGGATAAAGGAAAACA+TGG | + | chr5_3:39620866-39620885 | None:intergenic | 30.0% |
| ATGAATGGTCTGTCAAAATA+AGG | + | chr5_3:39620979-39620998 | None:intergenic | 30.0% | |
| TCATTCGATCTCAAAATCAA+TGG | - | chr5_3:39621153-39621172 | Msa0810750:intron | 30.0% | |
| ! | ATTTTGCACTGTTGTGAATT+CGG | - | chr5_3:39621272-39621291 | Msa0810750:intron | 30.0% |
| !! | TTGACTGATTTGCTATGTTA+GGG | - | chr5_3:39621702-39621721 | Msa0810750:CDS | 30.0% |
| AATTCGTCAGAGAAAGTTTG+TGG | - | chr5_3:39618179-39618198 | Msa0810750:intron | 35.0% | |
| AAATGTGGAGAGAATAGTGA+TGG | - | chr5_3:39618252-39618271 | Msa0810750:intron | 35.0% | |
| AGTTCATCTTCATCCTTAAC+AGG | + | chr5_3:39618447-39618466 | None:intergenic | 35.0% | |
| ! | GAACTATCTGAAGTTGTTTC+TGG | - | chr5_3:39618462-39618481 | Msa0810750:intron | 35.0% |
| !! | ATCTGAAGTTGTTTCTGGAT+TGG | - | chr5_3:39618467-39618486 | Msa0810750:intron | 35.0% |
| !! | TTGTTTCTGGATTGGATCAA+AGG | - | chr5_3:39618475-39618494 | Msa0810750:intron | 35.0% |
| !! | TGTTTCTGGATTGGATCAAA+GGG | - | chr5_3:39618476-39618495 | Msa0810750:intron | 35.0% |
| CAGTCAAGGTTGTAAAAATC+GGG | - | chr5_3:39618502-39618521 | Msa0810750:intron | 35.0% | |
| AAAAATCGGGACTTTACTTC+AGG | - | chr5_3:39618515-39618534 | Msa0810750:intron | 35.0% | |
| TCGAAAGGGAATAGCAAAAT+CGG | - | chr5_3:39618538-39618557 | Msa0810750:intron | 35.0% | |
| ACGATTTCATACAAAATCGC+AGG | + | chr5_3:39618797-39618816 | None:intergenic | 35.0% | |
| TTTACATCTTCTTGGGATTG+TGG | - | chr5_3:39618950-39618969 | Msa0810750:intron | 35.0% | |
| ! | CATGCCTTATTCACAAATGT+CGG | + | chr5_3:39619283-39619302 | None:intergenic | 35.0% |
| ATTTGTGAATAAGGCATGTC+CGG | - | chr5_3:39619285-39619304 | Msa0810750:intron | 35.0% | |
| GAATCATCTAGTACTATTGG+AGG | - | chr5_3:39619500-39619519 | Msa0810750:intron | 35.0% | |
| !! | AGAAGAACAGTTGATGAAGA+AGG | - | chr5_3:39619704-39619723 | Msa0810750:intron | 35.0% |
| ! | ATAAATTTTCACGCACTGTC+AGG | - | chr5_3:39620023-39620042 | Msa0810750:CDS | 35.0% |
| ! | TAAATTTTCACGCACTGTCA+GGG | - | chr5_3:39620024-39620043 | Msa0810750:CDS | 35.0% |
| TCAATTAGAACGGTACATTG+TGG | - | chr5_3:39620306-39620325 | Msa0810750:intron | 35.0% | |
| TAACGCAGCAACATCATTAA+GGG | + | chr5_3:39620363-39620382 | None:intergenic | 35.0% | |
| TTAACGCAGCAACATCATTA+AGG | + | chr5_3:39620364-39620383 | None:intergenic | 35.0% | |
| CAGAAGAATGCTTAGACAAA+TGG | + | chr5_3:39620565-39620584 | None:intergenic | 35.0% | |
| TGAAGCTTCATAGTGATTTG+AGG | - | chr5_3:39620613-39620632 | Msa0810750:intron | 35.0% | |
| GAAGCTTCATAGTGATTTGA+GGG | - | chr5_3:39620614-39620633 | Msa0810750:intron | 35.0% | |
| TGATGAATGCTTAACTGTGT+AGG | - | chr5_3:39620726-39620745 | Msa0810750:intron | 35.0% | |
| AGAACAACAGAAAAGGGAAT+TGG | - | chr5_3:39620771-39620790 | Msa0810750:intron | 35.0% | |
| !! | GATGTGAAAGTTGGTAAACA+TGG | + | chr5_3:39620814-39620833 | None:intergenic | 35.0% |
| ! | CTGATTTGAGATGTGAAAGT+TGG | + | chr5_3:39620823-39620842 | None:intergenic | 35.0% |
| CTTTATCCAAAAGTTGACGT+CGG | - | chr5_3:39620873-39620892 | Msa0810750:intron | 35.0% | |
| ! | TATATACCGACGTCAACTTT+TGG | + | chr5_3:39620882-39620901 | None:intergenic | 35.0% |
| GGTATATATTCCCTTACAGT+TGG | - | chr5_3:39620894-39620913 | Msa0810750:intron | 35.0% | |
| TTGATCAATCATTACCTCGT+TGG | + | chr5_3:39621003-39621022 | None:intergenic | 35.0% | |
| !! | TTTGGTTCTCTTGGTATAGT+TGG | + | chr5_3:39621352-39621371 | None:intergenic | 35.0% |
| !! | ATGTGAAACTTTGGTTCTCT+TGG | + | chr5_3:39621361-39621380 | None:intergenic | 35.0% |
| TCACATAAGCAAATGACTTC+TGG | + | chr5_3:39621456-39621475 | None:intergenic | 35.0% | |
| CAGTTGTATCAATTTGGTTG+TGG | - | chr5_3:39621541-39621560 | Msa0810750:CDS | 35.0% | |
| TATCAATTTGGTTGTGGAGT+AGG | - | chr5_3:39621547-39621566 | Msa0810750:CDS | 35.0% | |
| ! | TGGATTCTGTCTTTTCTGTT+TGG | - | chr5_3:39621572-39621591 | Msa0810750:CDS | 35.0% |
| !!! | TCTTTTCTGTTTGGTTTGAG+CGG | - | chr5_3:39621581-39621600 | Msa0810750:CDS | 35.0% |
| !! | GTTGACTGATTTGCTATGTT+AGG | - | chr5_3:39621701-39621720 | Msa0810750:CDS | 35.0% |
| !! | TGACTGATTTGCTATGTTAG+GGG | - | chr5_3:39621703-39621722 | Msa0810750:CDS | 35.0% |
| ACCAGATAAGAAGAAACCCT+TGG | - | chr5_3:39618044-39618063 | Msa0810750:three_prime_UTR | 40.0% | |
| TCCAAGGGTTTCTTCTTATC+TGG | + | chr5_3:39618048-39618067 | None:intergenic | 40.0% | |
| CTCTGACGAATTATCTTCTG+CGG | + | chr5_3:39618171-39618190 | None:intergenic | 40.0% | |
| TAAGTGTGTTTGCGAAGCAA+TGG | - | chr5_3:39618278-39618297 | Msa0810750:intron | 40.0% | |
| GCAATGGAAGAAACAAGGAA+TGG | - | chr5_3:39618294-39618313 | Msa0810750:intron | 40.0% | |
| AGGAATGGTGTACCTGAAAA+TGG | - | chr5_3:39618309-39618328 | Msa0810750:three_prime_UTR | 40.0% | |
| GTATAAAAAGGGAGACAGAG+AGG | - | chr5_3:39618373-39618392 | Msa0810750:CDS | 40.0% | |
| GGTGATGAAACAACCTGTTA+AGG | - | chr5_3:39618431-39618450 | Msa0810750:intron | 40.0% | |
| GACTTTACTTCAGGTCGAAA+GGG | - | chr5_3:39618524-39618543 | Msa0810750:intron | 40.0% | |
| CGAAAGGGAATAGCAAAATC+GGG | - | chr5_3:39618539-39618558 | Msa0810750:intron | 40.0% | |
| !! | AGTCGGGATTTTGACAACAA+TGG | - | chr5_3:39618922-39618941 | Msa0810750:intron | 40.0% |
| CTTGTGTCAATTGTTGTGTG+TGG | - | chr5_3:39619078-39619097 | Msa0810750:intron | 40.0% | |
| CTTGTGTCAATTGTTGTGTG+TGG | - | chr5_3:39619078-39619097 | Msa0810750:intron | 40.0% | |
| CCTTATTCACAAATGTCGGT+CGG | + | chr5_3:39619279-39619298 | None:intergenic | 40.0% | |
| TTACATCACATGTGTCGTGT+TGG | + | chr5_3:39619314-39619333 | None:intergenic | 40.0% | |
| GTGTTAGTGTTTGTGACATG+CGG | - | chr5_3:39619386-39619405 | Msa0810750:intron | 40.0% | |
| CATCTAGTACTATTGGAGGA+AGG | - | chr5_3:39619504-39619523 | Msa0810750:intron | 40.0% | |
| GTCAGAAACCTTTCAAGCTA+AGG | - | chr5_3:39619561-39619580 | Msa0810750:intron | 40.0% | |
| !! | ATGAGAGTACCTATTGCACA+AGG | - | chr5_3:39619756-39619775 | Msa0810750:intron | 40.0% |
| TCAGGTTCATCAATAGTCCA+TGG | + | chr5_3:39619786-39619805 | None:intergenic | 40.0% | |
| ! | ATGGACTATTGATGAACCTG+AGG | - | chr5_3:39619785-39619804 | Msa0810750:intron | 40.0% |
| CTATTGATGAACCTGAGGTA+AGG | - | chr5_3:39619790-39619809 | Msa0810750:intron | 40.0% | |
| TGAGAAATTGACCTTACCTC+AGG | + | chr5_3:39619804-39619823 | None:intergenic | 40.0% | |
| ! | GCTAATGGACAAGCATTAGT+AGG | + | chr5_3:39619944-39619963 | None:intergenic | 40.0% |
| ! | TTACATGATGGGACAATCAG+AGG | + | chr5_3:39619966-39619985 | None:intergenic | 40.0% |
| CGATTATAGCTTATGTCTGG+TGG | - | chr5_3:39619994-39620013 | Msa0810750:CDS | 40.0% | |
| ! | CATGATCAGTTGAGAAGTAC+TGG | + | chr5_3:39620064-39620083 | None:intergenic | 40.0% |
| TATCCTAGCATAACATGGCA+AGG | - | chr5_3:39620271-39620290 | Msa0810750:intron | 40.0% | |
| AGACTCGAGAGGATGTTTAT+TGG | + | chr5_3:39620390-39620409 | None:intergenic | 40.0% | |
| TGACCATATGTCAGCTGATA+TGG | - | chr5_3:39620410-39620429 | Msa0810750:intron | 40.0% | |
| ACTCCATATCAGCTGACATA+TGG | + | chr5_3:39620416-39620435 | None:intergenic | 40.0% | |
| !! | ACGAGGTATTGTGAGCAATA+AGG | + | chr5_3:39620466-39620485 | None:intergenic | 40.0% |
| ! | ACAAACACAGAAAGTACACG+AGG | + | chr5_3:39620483-39620502 | None:intergenic | 40.0% |
| CTATGAAGCTTCACATCAGT+AGG | + | chr5_3:39620606-39620625 | None:intergenic | 40.0% | |
| ! | CGACGTCAACTTTTGGATAA+AGG | + | chr5_3:39620875-39620894 | None:intergenic | 40.0% |
| AGGAAGAGATTAGGAGATTG+AGG | - | chr5_3:39620923-39620942 | Msa0810750:intron | 40.0% | |
| AGAGATTAGGAGATTGAGGA+AGG | - | chr5_3:39620927-39620946 | Msa0810750:intron | 40.0% | |
| GGTCTGTCAAAATAAGGCAT+TGG | + | chr5_3:39620973-39620992 | None:intergenic | 40.0% | |
| CATTACCTCGTTGGAATGAA+TGG | + | chr5_3:39620994-39621013 | None:intergenic | 40.0% | |
| CATGACACAGTTATCCATCT+TGG | - | chr5_3:39621130-39621149 | Msa0810750:intron | 40.0% | |
| TTGAGATCGAATGACCAAGA+TGG | + | chr5_3:39621147-39621166 | None:intergenic | 40.0% | |
| TGCTGAGGTATGTGAAACTT+TGG | + | chr5_3:39621370-39621389 | None:intergenic | 40.0% | |
| !! | GACTGATTTGCTATGTTAGG+GGG | - | chr5_3:39621704-39621723 | Msa0810750:CDS | 40.0% |
| !! | ACTGATTTGCTATGTTAGGG+GGG | - | chr5_3:39621705-39621724 | Msa0810750:CDS | 40.0% |
| GCGAAGCAATGGAAGAAACA+AGG | - | chr5_3:39618289-39618308 | Msa0810750:intron | 45.0% | |
| GGATCAAAGGGTTACAGTCA+AGG | - | chr5_3:39618488-39618507 | Msa0810750:intron | 45.0% | |
| GGACTTTACTTCAGGTCGAA+AGG | - | chr5_3:39618523-39618542 | Msa0810750:intron | 45.0% | |
| TCTTCTTGGGATTGTGGAAG+TGG | - | chr5_3:39618956-39618975 | Msa0810750:intron | 45.0% | |
| CCGACCGACATTTGTGAATA+AGG | - | chr5_3:39619276-39619295 | Msa0810750:intron | 45.0% | |
| CTAGTACTATTGGAGGAAGG+AGG | - | chr5_3:39619507-39619526 | Msa0810750:intron | 45.0% | |
| ACCTTTCAAGCTAAGGACTG+AGG | - | chr5_3:39619568-39619587 | Msa0810750:intron | 45.0% | |
| ! | ACCTCAGTCCTTAGCTTGAA+AGG | + | chr5_3:39619572-39619591 | None:intergenic | 45.0% |
| !! | TGGCTATATTGGTGATGCAC+TGG | - | chr5_3:39619647-39619666 | Msa0810750:intron | 45.0% |
| CATGGAAGACCTTGTGCAAT+AGG | + | chr5_3:39619768-39619787 | None:intergenic | 45.0% | |
| CTATTGCACAAGGTCTTCCA+TGG | - | chr5_3:39619766-39619785 | Msa0810750:intron | 45.0% | |
| ATGGGACAATCAGAGGCTAA+TGG | + | chr5_3:39619959-39619978 | None:intergenic | 45.0% | |
| TCTCCTTGCCATGTTATGCT+AGG | + | chr5_3:39620277-39620296 | None:intergenic | 45.0% | |
| ACATATGGTCAAGACTCGAG+AGG | + | chr5_3:39620401-39620420 | None:intergenic | 45.0% | |
| TCCTCTTCAGCCAACTGTAA+GGG | + | chr5_3:39620907-39620926 | None:intergenic | 45.0% | |
| TTCCTCTTCAGCCAACTGTA+AGG | + | chr5_3:39620908-39620927 | None:intergenic | 45.0% | |
| TGGCTGAAGAGGAAGAGATT+AGG | - | chr5_3:39620914-39620933 | Msa0810750:intron | 45.0% | |
| ACAGACCATTCATTCCAACG+AGG | - | chr5_3:39620986-39621005 | Msa0810750:intron | 45.0% | |
| CACTTGATCTGCTTATGCTG+AGG | + | chr5_3:39621385-39621404 | None:intergenic | 45.0% | |
| ATTTGGTTGTGGAGTAGGTG+TGG | - | chr5_3:39621552-39621571 | Msa0810750:CDS | 45.0% | |
| TGGTTTGAGCGGATAGTGTT+TGG | - | chr5_3:39621592-39621611 | Msa0810750:CDS | 45.0% | |
| !!! | TGTTTTGTTTCTGTGCCTGC+TGG | - | chr5_3:39621615-39621634 | Msa0810750:CDS | 45.0% |
| GTGAATCTGGTGTGCTCTAT+TGG | - | chr5_3:39621659-39621678 | Msa0810750:CDS | 45.0% | |
| AAGGGAGACAGAGAGGAATG+AGG | - | chr5_3:39618380-39618399 | Msa0810750:CDS | 50.0% | |
| GACAGAGAGGAATGAGGATG+AGG | - | chr5_3:39618386-39618405 | Msa0810750:CDS | 50.0% | |
| GGGATTGTGGAAGTGGAAGA+AGG | - | chr5_3:39618963-39618982 | Msa0810750:intron | 50.0% | |
| GTTTGTGCAGTGTGTGTAGC+AGG | - | chr5_3:39619164-39619183 | Msa0810750:CDS | 50.0% | |
| GTGTGTAGCAGGAACTCTTC+TGG | - | chr5_3:39619175-39619194 | Msa0810750:intron | 50.0% | |
| TGTAGCAGGAACTCTTCTGG+TGG | - | chr5_3:39619178-39619197 | Msa0810750:intron | 50.0% | |
| ACATGTGTCGTGTTGGACAC+CGG | + | chr5_3:39619307-39619326 | None:intergenic | 50.0% | |
| GTACTATTGGAGGAAGGAGG+TGG | - | chr5_3:39619510-39619529 | Msa0810750:intron | 50.0% | |
| TTTGAGGGCAATTGATCGCG+CGG | - | chr5_3:39620629-39620648 | Msa0810750:intron | 50.0% | |
| TCGCGCGGAATTTGATCATC+AGG | - | chr5_3:39620644-39620663 | Msa0810750:intron | 50.0% | |
| TCCCTTACAGTTGGCTGAAG+AGG | - | chr5_3:39620903-39620922 | Msa0810750:intron | 50.0% | |
| !! | TAAGGCATTGGCTGCGCTTT+AGG | + | chr5_3:39620961-39620980 | None:intergenic | 50.0% |
| ! | TGGTGTGCTCTATTGGTGCT+GGG | - | chr5_3:39621666-39621685 | Msa0810750:CDS | 50.0% |
| CTATGTTAGGGGGGCTGAAA+TGG | - | chr5_3:39621714-39621733 | Msa0810750:CDS | 50.0% | |
| GTCGGTCGGTACTATAGAGC+TGG | + | chr5_3:39619265-39619284 | None:intergenic | 55.0% | |
| CGCGACAGATCAAAACCAGC+AGG | + | chr5_3:39621633-39621652 | None:intergenic | 55.0% | |
| !! | GTTTTGATCTGTCGCGCCTG+TGG | - | chr5_3:39621637-39621656 | Msa0810750:CDS | 55.0% |
| GAGCACACCAGATTCACCAC+AGG | + | chr5_3:39621656-39621675 | None:intergenic | 55.0% | |
| CTGGTGTGCTCTATTGGTGC+TGG | - | chr5_3:39621665-39621684 | Msa0810750:CDS | 55.0% | |
| !! | TGTGCTCTATTGGTGCTGGG+AGG | - | chr5_3:39621669-39621688 | Msa0810750:CDS | 55.0% |
| !! | ATTGGTGCTGGGAGGTGGTT+TGG | - | chr5_3:39621677-39621696 | Msa0810750:CDS | 55.0% |
| TGTCGCGCCTGTGGTGAATC+TGG | - | chr5_3:39621646-39621665 | Msa0810750:CDS | 60.0% | |
| !! | GCTCTATTGGTGCTGGGAGG+TGG | - | chr5_3:39621672-39621691 | Msa0810750:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 39618039 | 39621738 | 39618039 | ID=Msa0810750;Name=Msa0810750 |
| chr5_3 | mRNA | 39618039 | 39621738 | 39618039 | ID=Msa0810750-mRNA-1;Parent=Msa0810750;Name=Msa0810750-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0.85|0.87|1|0.85|0.75|8|167|316 |
| chr5_3 | exon | 39618039 | 39618176 | 39618039 | ID=Msa0810750-mRNA-1:exon:12007;Parent=Msa0810750-mRNA-1 |
| chr5_3 | exon | 39618301 | 39618441 | 39618301 | ID=Msa0810750-mRNA-1:exon:12006;Parent=Msa0810750-mRNA-1 |
| chr5_3 | exon | 39618770 | 39618864 | 39618770 | ID=Msa0810750-mRNA-1:exon:12005;Parent=Msa0810750-mRNA-1 |
| chr5_3 | exon | 39618970 | 39619029 | 39618970 | ID=Msa0810750-mRNA-1:exon:12004;Parent=Msa0810750-mRNA-1 |
| chr5_3 | exon | 39619112 | 39619186 | 39619112 | ID=Msa0810750-mRNA-1:exon:12003;Parent=Msa0810750-mRNA-1 |
| chr5_3 | exon | 39619971 | 39620090 | 39619971 | ID=Msa0810750-mRNA-1:exon:12002;Parent=Msa0810750-mRNA-1 |
| chr5_3 | exon | 39620188 | 39620283 | 39620188 | ID=Msa0810750-mRNA-1:exon:12001;Parent=Msa0810750-mRNA-1 |
| chr5_3 | exon | 39621346 | 39621738 | 39621346 | ID=Msa0810750-mRNA-1:exon:12000;Parent=Msa0810750-mRNA-1 |
| chr5_3 | CDS | 39621346 | 39621738 | 39621346 | ID=Msa0810750-mRNA-1:cds;Parent=Msa0810750-mRNA-1 |
| chr5_3 | CDS | 39620188 | 39620283 | 39620188 | ID=Msa0810750-mRNA-1:cds;Parent=Msa0810750-mRNA-1 |
| chr5_3 | CDS | 39619971 | 39620090 | 39619971 | ID=Msa0810750-mRNA-1:cds;Parent=Msa0810750-mRNA-1 |
| chr5_3 | CDS | 39619112 | 39619186 | 39619112 | ID=Msa0810750-mRNA-1:cds;Parent=Msa0810750-mRNA-1 |
| chr5_3 | CDS | 39618970 | 39619029 | 39618970 | ID=Msa0810750-mRNA-1:cds;Parent=Msa0810750-mRNA-1 |
| chr5_3 | CDS | 39618770 | 39618864 | 39618770 | ID=Msa0810750-mRNA-1:cds;Parent=Msa0810750-mRNA-1 |
| chr5_3 | CDS | 39618330 | 39618441 | 39618330 | ID=Msa0810750-mRNA-1:cds;Parent=Msa0810750-mRNA-1 |
| chr5_3 | three_prime_UTR | 39618301 | 39618329 | 39618301 | ID=Msa0810750-mRNA-1:three_prime_utr;Parent=Msa0810750-mRNA-1 |
| chr5_3 | three_prime_UTR | 39618039 | 39618176 | 39618039 | ID=Msa0810750-mRNA-1:three_prime_utr;Parent=Msa0810750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
