AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0735170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0735170 MtrunA17_Chr6g0454541 78.696 230 17 3 80 277 166 395 1.68e-102 308
Msa0735170 MtrunA17_Chr6g0454541 87.500 80 10 0 1 80 1 80 9.32e-32 123
Msa0735170 MtrunA17_Chr7g0218721 51.000 200 75 4 91 277 177 366 1.41e-54 184
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0735170 AT5G15510.4 50.638 235 91 4 65 277 170 401 1.15e-63 207
Msa0735170 AT5G15510.3 50.638 235 91 4 65 277 170 401 1.15e-63 207
Msa0735170 AT5G15510.2 49.587 242 97 4 65 284 170 408 3.51e-63 208
Msa0735170 AT5G15510.1 50.833 240 97 5 65 284 170 408 3.82e-63 207
Msa0735170 AT3G01015.1 38.919 370 123 11 12 283 33 397 5.16e-56 189

Find 67 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGGTTACTTAGTATAAAA+AGG 0.150829 5_1:+50217230 Msa0735170:CDS
GAACTATCTGAAGTTGTTTC+TGG 0.155037 5_1:+50217331 Msa0735170:CDS
AGGAATGGTGTACCCGAAAA+TGG 0.235242 5_1:+50217178 Msa0735170:CDS
TTTCGATTAGAAAACTCATT+AGG 0.285358 5_1:-50216953 None:intergenic
AAACATGGCAACTCAAAATT+AGG 0.291421 5_1:-50219234 None:intergenic
AGTTCATCTTCATCCTTAAC+AGG 0.322831 5_1:-50217313 None:intergenic
GGGTTACAGTTACATCTTCT+TGG 0.323864 5_1:+50217365 Msa0735170:CDS
GTGTGTAGCAGGAGCTCTTC+TGG 0.324993 5_1:+50217551 Msa0735170:intron
TCCAAGGGTTTCTTCTTCTC+TGG 0.334067 5_1:-50216914 None:intergenic
AGAGAATGAGAAGAAGAATA+AGG 0.338941 5_1:+50217279 Msa0735170:CDS
TTCGATTAGAAAACTCATTA+GGG 0.343147 5_1:-50216952 None:intergenic
TGCACCTGATGATCAAATTC+CGG 0.346673 5_1:-50219035 None:intergenic
CATGGAAGACCTTGTGCAAT+AGG 0.364761 5_1:-50218134 None:intergenic
GCACCTGATGATCAAATTCC+GGG 0.368237 5_1:-50219034 None:intergenic
ATCTGAAGTTGTTTCTGGAT+TGG 0.396998 5_1:+50217336 Msa0735170:CDS
TTGGAATCATCTAGTACTAT+TGG 0.398723 5_1:+50217865 Msa0735170:CDS
AGAACAACAGAAAAGGGAAT+TGG 0.400583 5_1:+50219157 Msa0735170:intron
AGGCTTTGTGCTTTCTTTCA+CGG 0.409057 5_1:-50218970 None:intergenic
GGTTACAGTTACATCTTCTT+GGG 0.415618 5_1:+50217366 Msa0735170:CDS
CTATGAAGCTTCACATCAAT+AGG 0.425787 5_1:-50218990 None:intergenic
TCTTCTTGGGATTGTGGAAG+TGG 0.435767 5_1:+50217379 Msa0735170:CDS
GGTGATGAAACAACCTGTTA+AGG 0.440822 5_1:+50217300 Msa0735170:CDS
GGCTTTGTGCTTTCTTTCAC+GGG 0.443138 5_1:-50218969 None:intergenic
TCGCCCGGAATTTGATCATC+AGG 0.444522 5_1:+50219031 Msa0735170:CDS
ACCTCAGTCCTTAGCTTGAA+AGG 0.454283 5_1:-50217937 None:intergenic
TTTGATAGAACAACAGAAAA+GGG 0.460138 5_1:+50219151 Msa0735170:intron
GGGATTGTGGAAGTGGAAGA+AGG 0.460575 5_1:+50217386 Msa0735170:CDS
GGAATTGGAAATACAACAAA+AGG 0.463028 5_1:+50219172 Msa0735170:CDS
AATTCGTCAGAGAAAGTTTG+TGG 0.463296 5_1:+50217048 Msa0735170:CDS
GTTTGATAGAACAACAGAAA+AGG 0.465553 5_1:+50219150 Msa0735170:intron
TTGTTTCTGGATTGGATCAA+AGG 0.473482 5_1:+50217344 Msa0735170:CDS
GAAAGAGAAGAATGAGGATG+AGG 0.486091 5_1:+50217255 Msa0735170:CDS
GGAATGGTGTACCCGAAAAT+GGG 0.486111 5_1:+50217179 Msa0735170:CDS
GTTACATCTTCTTGGGATTG+TGG 0.489323 5_1:+50217373 Msa0735170:CDS
GAAGCTTCATAGTGATTTGA+GGG 0.498697 5_1:+50219001 Msa0735170:CDS
GTTCAAATTCTCAATTTCCA+AGG 0.500670 5_1:-50216930 None:intergenic
GTACTATTGGAGGAAGGAGG+TGG 0.500694 5_1:+50217878 Msa0735170:CDS
TGTTTCTGGATTGGATCAAA+GGG 0.501809 5_1:+50217345 Msa0735170:CDS
AGAAGAACAGTTGATGAAGA+AGG 0.503039 5_1:+50218073 Msa0735170:CDS
TGAAGCTTCATAGTGATTTG+AGG 0.503817 5_1:+50219000 Msa0735170:CDS
TGATCAAAGTCCTGAGAAAA+CGG 0.504621 5_1:+50217090 Msa0735170:CDS
TTCAAATTCTCAATTTCCAA+GGG 0.511479 5_1:-50216929 None:intergenic
TTTGAGGGCAATTGATCGCC+CGG 0.517154 5_1:+50219016 Msa0735170:CDS
CTCTGACGAATTCTCTTCTG+CGG 0.520745 5_1:-50217037 None:intergenic
CTATTGCACAAGGTCTTCCA+TGG 0.526302 5_1:+50218135 Msa0735170:CDS
GTCAGAAACCTTTCAAGCTA+AGG 0.529285 5_1:+50217929 Msa0735170:CDS
AAATGGGAAAGTGATGCATT+TGG 0.531951 5_1:+50217195 Msa0735170:CDS
ACCAGAGAAGAAGAAACCCT+TGG 0.560006 5_1:+50216913 Msa0735170:CDS
TATTCGACGATTTCTGAAGT+GGG 0.563035 5_1:-50216976 None:intergenic
GAATCATCTAGTACTATTGG+AGG 0.568710 5_1:+50217868 Msa0735170:CDS
CTGATTTGAGATGTGAAAGT+TGG 0.569316 5_1:-50219206 None:intergenic
TCAGGTTCATCAATAGTCCA+TGG 0.571822 5_1:-50218152 None:intergenic
TTATTCGACGATTTCTGAAG+TGG 0.574876 5_1:-50216977 None:intergenic
AAGGGAGAAAGAGAAGAATG+AGG 0.575728 5_1:+50217249 Msa0735170:CDS
AAATGTGGAGCGAATAGTGA+TGG 0.598925 5_1:+50217121 Msa0735170:CDS
CATCTAGTACTATTGGAGGA+AGG 0.619078 5_1:+50217872 Msa0735170:CDS
TTTGTGCTTTCTTTCACGGG+AGG 0.620777 5_1:-50218966 None:intergenic
GAAAGTGATGCATTTGGTGA+AGG 0.626466 5_1:+50217201 Msa0735170:CDS
GCAATGGAAGAAACAAGGAA+TGG 0.646394 5_1:+50217163 Msa0735170:intron
GCGAAGCAATGGAAGAAACA+AGG 0.647299 5_1:+50217158 Msa0735170:intron
CTAGTACTATTGGAGGAAGG+AGG 0.649542 5_1:+50217875 Msa0735170:CDS
TGTAGCAGGAGCTCTTCTGG+TGG 0.661351 5_1:+50217554 Msa0735170:intron
GATGTGAAAGTTGGTAAACA+TGG 0.662802 5_1:-50219197 None:intergenic
ATGGACTATTGATGAACCTG+AGG 0.663121 5_1:+50218154 Msa0735170:CDS
ACCTTTCAAGCTAAGGACTG+AGG 0.672965 5_1:+50217936 Msa0735170:CDS
ATGAGAGTACCTATTGCACA+AGG 0.699289 5_1:+50218125 Msa0735170:CDS
ATAATGCTATTGTAGCAAAG+GGG 0.728973 5_1:+50218041 Msa0735170:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTGATGATACAAATAAT+TGG + chr5_1:50217959-50217978 Msa0735170:intron 15.0%
!! TTAAAAATTCTTTACATTGA+CGG + chr5_1:50218526-50218545 Msa0735170:intron 15.0%
!!! TAATTGATGATACAAATAAT+TGG + chr5_1:50217959-50217978 Msa0735170:intron 15.0%
!! TTAAAAATTCTTTACATTGA+CGG + chr5_1:50218526-50218545 Msa0735170:intron 15.0%
!! ACTATAATACTAATGAAGAT+TGG + chr5_1:50217789-50217808 Msa0735170:intron 20.0%
!! TTAGTGATTCACTATTAATA+AGG + chr5_1:50217812-50217831 Msa0735170:intron 20.0%
!! CAAATTTATCATAATTCTGT+TGG + chr5_1:50218891-50218910 Msa0735170:intron 20.0%
!! ACTATAATACTAATGAAGAT+TGG + chr5_1:50217789-50217808 Msa0735170:intron 20.0%
!! TTAGTGATTCACTATTAATA+AGG + chr5_1:50217812-50217831 Msa0735170:intron 20.0%
!! CAAATTTATCATAATTCTGT+TGG + chr5_1:50218891-50218910 Msa0735170:intron 20.0%
! TTCAAATTCTCAATTTCCAA+GGG - chr5_1:50216932-50216951 None:intergenic 25.0%
! TTCGATTAGAAAACTCATTA+GGG - chr5_1:50216955-50216974 None:intergenic 25.0%
! TTTCGATTAGAAAACTCATT+AGG - chr5_1:50216956-50216975 None:intergenic 25.0%
! AGAGGTTACTTAGTATAAAA+AGG + chr5_1:50217230-50217249 Msa0735170:CDS 25.0%
! GAGGTTACTTAGTATAAAAA+GGG + chr5_1:50217231-50217250 Msa0735170:CDS 25.0%
! ACATGTGATGTAATTAACAT+TGG + chr5_1:50217691-50217710 Msa0735170:intron 25.0%
!! TCATTTTCGCAAAATGTTAT+CGG + chr5_1:50217720-50217739 Msa0735170:intron 25.0%
!!! GTTTCTTCAAATTTTTTCAG+TGG + chr5_1:50217996-50218015 Msa0735170:intron 25.0%
!!! AATTTTTTCAGTGGCTATAT+TGG + chr5_1:50218005-50218024 Msa0735170:intron 25.0%
! TATAATGCTATTGTAGCAAA+GGG + chr5_1:50218040-50218059 Msa0735170:intron 25.0%
!!! GTAATTTGTTAATCAAGCAT+AGG + chr5_1:50218277-50218296 Msa0735170:intron 25.0%
! ATGCTAGGATATTAGATATA+AGG - chr5_1:50218631-50218650 None:intergenic 25.0%
! ATAGCAATTCTCAATTAGAA+CGG + chr5_1:50218665-50218684 Msa0735170:intron 25.0%
! TCATGATGTGTAAAACTAAA+GGG - chr5_1:50219083-50219102 None:intergenic 25.0%
! TTCATGATGTGTAAAACTAA+AGG - chr5_1:50219084-50219103 None:intergenic 25.0%
! TTTGATAGAACAACAGAAAA+GGG + chr5_1:50219151-50219170 Msa0735170:intron 25.0%
! TTCAAATTCTCAATTTCCAA+GGG - chr5_1:50216932-50216951 None:intergenic 25.0%
! TTCGATTAGAAAACTCATTA+GGG - chr5_1:50216955-50216974 None:intergenic 25.0%
! TTTCGATTAGAAAACTCATT+AGG - chr5_1:50216956-50216975 None:intergenic 25.0%
! AGAGGTTACTTAGTATAAAA+AGG + chr5_1:50217230-50217249 Msa0735170:CDS 25.0%
! GAGGTTACTTAGTATAAAAA+GGG + chr5_1:50217231-50217250 Msa0735170:CDS 25.0%
! ACATGTGATGTAATTAACAT+TGG + chr5_1:50217691-50217710 Msa0735170:intron 25.0%
!! TCATTTTCGCAAAATGTTAT+CGG + chr5_1:50217720-50217739 Msa0735170:intron 25.0%
!!! GTTTCTTCAAATTTTTTCAG+TGG + chr5_1:50217996-50218015 Msa0735170:intron 25.0%
!!! AATTTTTTCAGTGGCTATAT+TGG + chr5_1:50218005-50218024 Msa0735170:intron 25.0%
! TATAATGCTATTGTAGCAAA+GGG + chr5_1:50218040-50218059 Msa0735170:intron 25.0%
!!! GTAATTTGTTAATCAAGCAT+AGG + chr5_1:50218277-50218296 Msa0735170:intron 25.0%
! ATGCTAGGATATTAGATATA+AGG - chr5_1:50218631-50218650 None:intergenic 25.0%
! ATAGCAATTCTCAATTAGAA+CGG + chr5_1:50218665-50218684 Msa0735170:intron 25.0%
! TCATGATGTGTAAAACTAAA+GGG - chr5_1:50219083-50219102 None:intergenic 25.0%
! TTCATGATGTGTAAAACTAA+AGG - chr5_1:50219084-50219103 None:intergenic 25.0%
! TTTGATAGAACAACAGAAAA+GGG + chr5_1:50219151-50219170 Msa0735170:intron 25.0%
GTTCAAATTCTCAATTTCCA+AGG - chr5_1:50216933-50216952 None:intergenic 30.0%
!! AAAACGGTTTTGTGTAAATG+TGG + chr5_1:50217106-50217125 Msa0735170:CDS 30.0%
AGAGAATGAGAAGAAGAATA+AGG + chr5_1:50217279-50217298 Msa0735170:CDS 30.0%
!!! TTTCTGTGTTTTTTAGAGCT+TGG + chr5_1:50217846-50217865 Msa0735170:intron 30.0%
TTGGAATCATCTAGTACTAT+TGG + chr5_1:50217865-50217884 Msa0735170:CDS 30.0%
CTATAATGCTATTGTAGCAA+AGG + chr5_1:50218039-50218058 Msa0735170:intron 30.0%
ATAATGCTATTGTAGCAAAG+GGG + chr5_1:50218041-50218060 Msa0735170:intron 30.0%
AGCATATACACTTCAAACTA+AGG - chr5_1:50218203-50218222 None:intergenic 30.0%
TAACAACTCACAGTCAAATT+TGG + chr5_1:50218226-50218245 Msa0735170:intron 30.0%
TCGTAATTGCATTACATGAT+GGG - chr5_1:50218346-50218365 None:intergenic 30.0%
ATCGTAATTGCATTACATGA+TGG - chr5_1:50218347-50218366 None:intergenic 30.0%
TTACGATTATAGCTTATGTC+TGG + chr5_1:50218360-50218379 Msa0735170:intron 30.0%
GAATTAAATCTGTGAGTAGT+TGG + chr5_1:50218556-50218575 Msa0735170:intron 30.0%
TCTAATATCCTAGCATAACA+TGG + chr5_1:50218635-50218654 Msa0735170:intron 30.0%
CATGATGTGTAAAACTAAAG+GGG - chr5_1:50219082-50219101 None:intergenic 30.0%
GTTTGATAGAACAACAGAAA+AGG + chr5_1:50219150-50219169 Msa0735170:intron 30.0%
GGAATTGGAAATACAACAAA+AGG + chr5_1:50219172-50219191 Msa0735170:CDS 30.0%
GTTCAAATTCTCAATTTCCA+AGG - chr5_1:50216933-50216952 None:intergenic 30.0%
!! AAAACGGTTTTGTGTAAATG+TGG + chr5_1:50217106-50217125 Msa0735170:CDS 30.0%
AGAGAATGAGAAGAAGAATA+AGG + chr5_1:50217279-50217298 Msa0735170:CDS 30.0%
!!! TTTCTGTGTTTTTTAGAGCT+TGG + chr5_1:50217846-50217865 Msa0735170:intron 30.0%
TTGGAATCATCTAGTACTAT+TGG + chr5_1:50217865-50217884 Msa0735170:CDS 30.0%
CTATAATGCTATTGTAGCAA+AGG + chr5_1:50218039-50218058 Msa0735170:intron 30.0%
ATAATGCTATTGTAGCAAAG+GGG + chr5_1:50218041-50218060 Msa0735170:intron 30.0%
AGCATATACACTTCAAACTA+AGG - chr5_1:50218203-50218222 None:intergenic 30.0%
TAACAACTCACAGTCAAATT+TGG + chr5_1:50218226-50218245 Msa0735170:intron 30.0%
TCGTAATTGCATTACATGAT+GGG - chr5_1:50218346-50218365 None:intergenic 30.0%
ATCGTAATTGCATTACATGA+TGG - chr5_1:50218347-50218366 None:intergenic 30.0%
TTACGATTATAGCTTATGTC+TGG + chr5_1:50218360-50218379 Msa0735170:intron 30.0%
GAATTAAATCTGTGAGTAGT+TGG + chr5_1:50218556-50218575 Msa0735170:intron 30.0%
TCTAATATCCTAGCATAACA+TGG + chr5_1:50218635-50218654 Msa0735170:intron 30.0%
CATGATGTGTAAAACTAAAG+GGG - chr5_1:50219082-50219101 None:intergenic 30.0%
GTTTGATAGAACAACAGAAA+AGG + chr5_1:50219150-50219169 Msa0735170:intron 30.0%
GGAATTGGAAATACAACAAA+AGG + chr5_1:50219172-50219191 Msa0735170:CDS 30.0%
!! TATTCGACGATTTCTGAAGT+GGG - chr5_1:50216979-50216998 None:intergenic 35.0%
! TTATTCGACGATTTCTGAAG+TGG - chr5_1:50216980-50216999 None:intergenic 35.0%
AATTCGTCAGAGAAAGTTTG+TGG + chr5_1:50217048-50217067 Msa0735170:CDS 35.0%
TGATCAAAGTCCTGAGAAAA+CGG + chr5_1:50217090-50217109 Msa0735170:CDS 35.0%
! TTACACAAAACCGTTTTCTC+AGG - chr5_1:50217103-50217122 None:intergenic 35.0%
! ATGCATCACTTTCCCATTTT+CGG - chr5_1:50217194-50217213 None:intergenic 35.0%
AAATGGGAAAGTGATGCATT+TGG + chr5_1:50217195-50217214 Msa0735170:CDS 35.0%
!! ATTTGGTGAAGGATTTTGAG+AGG + chr5_1:50217212-50217231 Msa0735170:CDS 35.0%
AGTTCATCTTCATCCTTAAC+AGG - chr5_1:50217316-50217335 None:intergenic 35.0%
! GAACTATCTGAAGTTGTTTC+TGG + chr5_1:50217331-50217350 Msa0735170:CDS 35.0%
!! ATCTGAAGTTGTTTCTGGAT+TGG + chr5_1:50217336-50217355 Msa0735170:CDS 35.0%
!! TTGTTTCTGGATTGGATCAA+AGG + chr5_1:50217344-50217363 Msa0735170:CDS 35.0%
!! TGTTTCTGGATTGGATCAAA+GGG + chr5_1:50217345-50217364 Msa0735170:CDS 35.0%
GGTTACAGTTACATCTTCTT+GGG + chr5_1:50217366-50217385 Msa0735170:CDS 35.0%
CATGCCTTAATCACAAATGT+CGG - chr5_1:50217653-50217672 None:intergenic 35.0%
ATTTGTGATTAAGGCATGTC+CGG + chr5_1:50217655-50217674 Msa0735170:intron 35.0%
GAATCATCTAGTACTATTGG+AGG + chr5_1:50217868-50217887 Msa0735170:CDS 35.0%
!! AGAAGAACAGTTGATGAAGA+AGG + chr5_1:50218073-50218092 Msa0735170:CDS 35.0%
! ATAAATTTTCACGCACTGTC+AGG + chr5_1:50218392-50218411 Msa0735170:intron 35.0%
! TAAATTTTCACGCACTGTCA+GGG + chr5_1:50218393-50218412 Msa0735170:intron 35.0%
TCAATTAGAACGGTACATTG+TGG + chr5_1:50218675-50218694 Msa0735170:intron 35.0%
TAACGCAGCAACATCATTAA+GGG - chr5_1:50218732-50218751 None:intergenic 35.0%
TTAACGCAGCAACATCATTA+AGG - chr5_1:50218733-50218752 None:intergenic 35.0%
AGACTCAAGAGGATGTTTAT+TGG - chr5_1:50218759-50218778 None:intergenic 35.0%
TGGAGTTAATTCAGTTTCAG+TGG + chr5_1:50218799-50218818 Msa0735170:intron 35.0%
CTGTAACAGAAGAATGCTAA+TGG - chr5_1:50218934-50218953 None:intergenic 35.0%
CTATGAAGCTTCACATCAAT+AGG - chr5_1:50218993-50219012 None:intergenic 35.0%
TGAAGCTTCATAGTGATTTG+AGG + chr5_1:50219000-50219019 Msa0735170:CDS 35.0%
GAAGCTTCATAGTGATTTGA+GGG + chr5_1:50219001-50219020 Msa0735170:CDS 35.0%
TGATGAATGCTTAACTGTGT+AGG + chr5_1:50219113-50219132 Msa0735170:intron 35.0%
AGAACAACAGAAAAGGGAAT+TGG + chr5_1:50219157-50219176 Msa0735170:intron 35.0%
!! GATGTGAAAGTTGGTAAACA+TGG - chr5_1:50219200-50219219 None:intergenic 35.0%
! CTGATTTGAGATGTGAAAGT+TGG - chr5_1:50219209-50219228 None:intergenic 35.0%
!! TATTCGACGATTTCTGAAGT+GGG - chr5_1:50216979-50216998 None:intergenic 35.0%
! TTATTCGACGATTTCTGAAG+TGG - chr5_1:50216980-50216999 None:intergenic 35.0%
AATTCGTCAGAGAAAGTTTG+TGG + chr5_1:50217048-50217067 Msa0735170:CDS 35.0%
TGATCAAAGTCCTGAGAAAA+CGG + chr5_1:50217090-50217109 Msa0735170:CDS 35.0%
! TTACACAAAACCGTTTTCTC+AGG - chr5_1:50217103-50217122 None:intergenic 35.0%
! ATGCATCACTTTCCCATTTT+CGG - chr5_1:50217194-50217213 None:intergenic 35.0%
AAATGGGAAAGTGATGCATT+TGG + chr5_1:50217195-50217214 Msa0735170:CDS 35.0%
!! ATTTGGTGAAGGATTTTGAG+AGG + chr5_1:50217212-50217231 Msa0735170:CDS 35.0%
AGTTCATCTTCATCCTTAAC+AGG - chr5_1:50217316-50217335 None:intergenic 35.0%
! GAACTATCTGAAGTTGTTTC+TGG + chr5_1:50217331-50217350 Msa0735170:CDS 35.0%
!! ATCTGAAGTTGTTTCTGGAT+TGG + chr5_1:50217336-50217355 Msa0735170:CDS 35.0%
!! TTGTTTCTGGATTGGATCAA+AGG + chr5_1:50217344-50217363 Msa0735170:CDS 35.0%
!! TGTTTCTGGATTGGATCAAA+GGG + chr5_1:50217345-50217364 Msa0735170:CDS 35.0%
GGTTACAGTTACATCTTCTT+GGG + chr5_1:50217366-50217385 Msa0735170:CDS 35.0%
CATGCCTTAATCACAAATGT+CGG - chr5_1:50217653-50217672 None:intergenic 35.0%
ATTTGTGATTAAGGCATGTC+CGG + chr5_1:50217655-50217674 Msa0735170:intron 35.0%
GAATCATCTAGTACTATTGG+AGG + chr5_1:50217868-50217887 Msa0735170:CDS 35.0%
!! AGAAGAACAGTTGATGAAGA+AGG + chr5_1:50218073-50218092 Msa0735170:CDS 35.0%
! ATAAATTTTCACGCACTGTC+AGG + chr5_1:50218392-50218411 Msa0735170:intron 35.0%
! TAAATTTTCACGCACTGTCA+GGG + chr5_1:50218393-50218412 Msa0735170:intron 35.0%
TCAATTAGAACGGTACATTG+TGG + chr5_1:50218675-50218694 Msa0735170:intron 35.0%
TAACGCAGCAACATCATTAA+GGG - chr5_1:50218732-50218751 None:intergenic 35.0%
TTAACGCAGCAACATCATTA+AGG - chr5_1:50218733-50218752 None:intergenic 35.0%
AGACTCAAGAGGATGTTTAT+TGG - chr5_1:50218759-50218778 None:intergenic 35.0%
TGGAGTTAATTCAGTTTCAG+TGG + chr5_1:50218799-50218818 Msa0735170:intron 35.0%
CTGTAACAGAAGAATGCTAA+TGG - chr5_1:50218934-50218953 None:intergenic 35.0%
CTATGAAGCTTCACATCAAT+AGG - chr5_1:50218993-50219012 None:intergenic 35.0%
TGAAGCTTCATAGTGATTTG+AGG + chr5_1:50219000-50219019 Msa0735170:CDS 35.0%
GAAGCTTCATAGTGATTTGA+GGG + chr5_1:50219001-50219020 Msa0735170:CDS 35.0%
TGATGAATGCTTAACTGTGT+AGG + chr5_1:50219113-50219132 Msa0735170:intron 35.0%
AGAACAACAGAAAAGGGAAT+TGG + chr5_1:50219157-50219176 Msa0735170:intron 35.0%
!! GATGTGAAAGTTGGTAAACA+TGG - chr5_1:50219200-50219219 None:intergenic 35.0%
! CTGATTTGAGATGTGAAAGT+TGG - chr5_1:50219209-50219228 None:intergenic 35.0%
AAATGTGGAGCGAATAGTGA+TGG + chr5_1:50217121-50217140 Msa0735170:CDS 40.0%
TAAGTGTGTTTGCGAAGCAA+TGG + chr5_1:50217147-50217166 Msa0735170:intron 40.0%
GCAATGGAAGAAACAAGGAA+TGG + chr5_1:50217163-50217182 Msa0735170:intron 40.0%
! TGCATCACTTTCCCATTTTC+GGG - chr5_1:50217193-50217212 None:intergenic 40.0%
! GAAAGTGATGCATTTGGTGA+AGG + chr5_1:50217201-50217220 Msa0735170:CDS 40.0%
AAGGGAGAAAGAGAAGAATG+AGG + chr5_1:50217249-50217268 Msa0735170:CDS 40.0%
GAAAGAGAAGAATGAGGATG+AGG + chr5_1:50217255-50217274 Msa0735170:CDS 40.0%
GGTGATGAAACAACCTGTTA+AGG + chr5_1:50217300-50217319 Msa0735170:CDS 40.0%
GGGTTACAGTTACATCTTCT+TGG + chr5_1:50217365-50217384 Msa0735170:CDS 40.0%
GTTACATCTTCTTGGGATTG+TGG + chr5_1:50217373-50217392 Msa0735170:CDS 40.0%
! TTTTGTGTAGTGTGTGTAGC+AGG + chr5_1:50217540-50217559 Msa0735170:intron 40.0%
CCTTAATCACAAATGTCGGT+CGG - chr5_1:50217649-50217668 None:intergenic 40.0%
TTACATCACATGTGTCGTGT+CGG - chr5_1:50217684-50217703 None:intergenic 40.0%
GTGTTAGTGTTTGTGACATG+CGG + chr5_1:50217756-50217775 Msa0735170:intron 40.0%
CATCTAGTACTATTGGAGGA+AGG + chr5_1:50217872-50217891 Msa0735170:CDS 40.0%
GTCAGAAACCTTTCAAGCTA+AGG + chr5_1:50217929-50217948 Msa0735170:CDS 40.0%
!! TGGCTATATTGGTGATGCAT+TGG + chr5_1:50218016-50218035 Msa0735170:intron 40.0%
!! ATGAGAGTACCTATTGCACA+AGG + chr5_1:50218125-50218144 Msa0735170:CDS 40.0%
TCAGGTTCATCAATAGTCCA+TGG - chr5_1:50218155-50218174 None:intergenic 40.0%
! ATGGACTATTGATGAACCTG+AGG + chr5_1:50218154-50218173 Msa0735170:CDS 40.0%
CTATTGATGAACCTGAGGTA+AGG + chr5_1:50218159-50218178 Msa0735170:intron 40.0%
TGAGAAATTGACCTTACCTC+AGG - chr5_1:50218173-50218192 None:intergenic 40.0%
! GCTAATGGACAAGCATTAGT+AGG - chr5_1:50218313-50218332 None:intergenic 40.0%
! TTACATGATGGGACAATCAG+AGG - chr5_1:50218335-50218354 None:intergenic 40.0%
CGATTATAGCTTATGTCTGG+TGG + chr5_1:50218363-50218382 Msa0735170:intron 40.0%
! CATGATCAGTTGAGAAGTAC+TGG - chr5_1:50218433-50218452 None:intergenic 40.0%
TATCCTAGCATAACATGGCA+AGG + chr5_1:50218640-50218659 Msa0735170:intron 40.0%
ACATATGGTCAAGACTCAAG+AGG - chr5_1:50218770-50218789 None:intergenic 40.0%
TGACCATATGTCAGCTGATA+TGG + chr5_1:50218779-50218798 Msa0735170:intron 40.0%
ACTCCATATCAGCTGACATA+TGG - chr5_1:50218785-50218804 None:intergenic 40.0%
!! ACGAGGTATTGTGAGCAATA+AGG - chr5_1:50218835-50218854 None:intergenic 40.0%
! ACAAACACAGAAAGTACACG+AGG - chr5_1:50218852-50218871 None:intergenic 40.0%
! AGGCTTTGTGCTTTCTTTCA+CGG - chr5_1:50218973-50218992 None:intergenic 40.0%
TGCACCTGATGATCAAATTC+CGG - chr5_1:50219038-50219057 None:intergenic 40.0%
TGTGTAGGTCGCTGAAAAAT+TGG + chr5_1:50219128-50219147 Msa0735170:intron 40.0%
!! TTCTTCTTCTCTGGTGTCAT+TGG - chr5_1:50216908-50216927 None:intergenic 40.0%
AAATGTGGAGCGAATAGTGA+TGG + chr5_1:50217121-50217140 Msa0735170:CDS 40.0%
TAAGTGTGTTTGCGAAGCAA+TGG + chr5_1:50217147-50217166 Msa0735170:intron 40.0%
GCAATGGAAGAAACAAGGAA+TGG + chr5_1:50217163-50217182 Msa0735170:intron 40.0%
! TGCATCACTTTCCCATTTTC+GGG - chr5_1:50217193-50217212 None:intergenic 40.0%
! GAAAGTGATGCATTTGGTGA+AGG + chr5_1:50217201-50217220 Msa0735170:CDS 40.0%
AAGGGAGAAAGAGAAGAATG+AGG + chr5_1:50217249-50217268 Msa0735170:CDS 40.0%
GAAAGAGAAGAATGAGGATG+AGG + chr5_1:50217255-50217274 Msa0735170:CDS 40.0%
GGTGATGAAACAACCTGTTA+AGG + chr5_1:50217300-50217319 Msa0735170:CDS 40.0%
GGGTTACAGTTACATCTTCT+TGG + chr5_1:50217365-50217384 Msa0735170:CDS 40.0%
GTTACATCTTCTTGGGATTG+TGG + chr5_1:50217373-50217392 Msa0735170:CDS 40.0%
! TTTTGTGTAGTGTGTGTAGC+AGG + chr5_1:50217540-50217559 Msa0735170:intron 40.0%
CCTTAATCACAAATGTCGGT+CGG - chr5_1:50217649-50217668 None:intergenic 40.0%
TTACATCACATGTGTCGTGT+CGG - chr5_1:50217684-50217703 None:intergenic 40.0%
GTGTTAGTGTTTGTGACATG+CGG + chr5_1:50217756-50217775 Msa0735170:intron 40.0%
CATCTAGTACTATTGGAGGA+AGG + chr5_1:50217872-50217891 Msa0735170:CDS 40.0%
GTCAGAAACCTTTCAAGCTA+AGG + chr5_1:50217929-50217948 Msa0735170:CDS 40.0%
!! TGGCTATATTGGTGATGCAT+TGG + chr5_1:50218016-50218035 Msa0735170:intron 40.0%
!! ATGAGAGTACCTATTGCACA+AGG + chr5_1:50218125-50218144 Msa0735170:CDS 40.0%
TCAGGTTCATCAATAGTCCA+TGG - chr5_1:50218155-50218174 None:intergenic 40.0%
! ATGGACTATTGATGAACCTG+AGG + chr5_1:50218154-50218173 Msa0735170:CDS 40.0%
CTATTGATGAACCTGAGGTA+AGG + chr5_1:50218159-50218178 Msa0735170:intron 40.0%
TGAGAAATTGACCTTACCTC+AGG - chr5_1:50218173-50218192 None:intergenic 40.0%
! GCTAATGGACAAGCATTAGT+AGG - chr5_1:50218313-50218332 None:intergenic 40.0%
! TTACATGATGGGACAATCAG+AGG - chr5_1:50218335-50218354 None:intergenic 40.0%
CGATTATAGCTTATGTCTGG+TGG + chr5_1:50218363-50218382 Msa0735170:intron 40.0%
! CATGATCAGTTGAGAAGTAC+TGG - chr5_1:50218433-50218452 None:intergenic 40.0%
TATCCTAGCATAACATGGCA+AGG + chr5_1:50218640-50218659 Msa0735170:intron 40.0%
ACATATGGTCAAGACTCAAG+AGG - chr5_1:50218770-50218789 None:intergenic 40.0%
TGACCATATGTCAGCTGATA+TGG + chr5_1:50218779-50218798 Msa0735170:intron 40.0%
ACTCCATATCAGCTGACATA+TGG - chr5_1:50218785-50218804 None:intergenic 40.0%
!! ACGAGGTATTGTGAGCAATA+AGG - chr5_1:50218835-50218854 None:intergenic 40.0%
! ACAAACACAGAAAGTACACG+AGG - chr5_1:50218852-50218871 None:intergenic 40.0%
! AGGCTTTGTGCTTTCTTTCA+CGG - chr5_1:50218973-50218992 None:intergenic 40.0%
TGCACCTGATGATCAAATTC+CGG - chr5_1:50219038-50219057 None:intergenic 40.0%
TGTGTAGGTCGCTGAAAAAT+TGG + chr5_1:50219128-50219147 Msa0735170:intron 40.0%
ACCAGAGAAGAAGAAACCCT+TGG + chr5_1:50216913-50216932 Msa0735170:CDS 45.0%
TCCAAGGGTTTCTTCTTCTC+TGG - chr5_1:50216917-50216936 None:intergenic 45.0%
CTCTGACGAATTCTCTTCTG+CGG - chr5_1:50217040-50217059 None:intergenic 45.0%
GCGAAGCAATGGAAGAAACA+AGG + chr5_1:50217158-50217177 Msa0735170:intron 45.0%
AGGAATGGTGTACCCGAAAA+TGG + chr5_1:50217178-50217197 Msa0735170:CDS 45.0%
GGAATGGTGTACCCGAAAAT+GGG + chr5_1:50217179-50217198 Msa0735170:CDS 45.0%
TCTTCTTGGGATTGTGGAAG+TGG + chr5_1:50217379-50217398 Msa0735170:CDS 45.0%
CCGACCGACATTTGTGATTA+AGG + chr5_1:50217646-50217665 Msa0735170:intron 45.0%
CTAGTACTATTGGAGGAAGG+AGG + chr5_1:50217875-50217894 Msa0735170:CDS 45.0%
ACCTTTCAAGCTAAGGACTG+AGG + chr5_1:50217936-50217955 Msa0735170:CDS 45.0%
! ACCTCAGTCCTTAGCTTGAA+AGG - chr5_1:50217940-50217959 None:intergenic 45.0%
CATGGAAGACCTTGTGCAAT+AGG - chr5_1:50218137-50218156 None:intergenic 45.0%
CTATTGCACAAGGTCTTCCA+TGG + chr5_1:50218135-50218154 Msa0735170:CDS 45.0%
ATGGGACAATCAGAGGCTAA+TGG - chr5_1:50218328-50218347 None:intergenic 45.0%
TCTCCTTGCCATGTTATGCT+AGG - chr5_1:50218646-50218665 None:intergenic 45.0%
TTTGTGCTTTCTTTCACGGG+AGG - chr5_1:50218969-50218988 None:intergenic 45.0%
! GGCTTTGTGCTTTCTTTCAC+GGG - chr5_1:50218972-50218991 None:intergenic 45.0%
GCACCTGATGATCAAATTCC+GGG - chr5_1:50219037-50219056 None:intergenic 45.0%
ACCAGAGAAGAAGAAACCCT+TGG + chr5_1:50216913-50216932 Msa0735170:CDS 45.0%
TCCAAGGGTTTCTTCTTCTC+TGG - chr5_1:50216917-50216936 None:intergenic 45.0%
CTCTGACGAATTCTCTTCTG+CGG - chr5_1:50217040-50217059 None:intergenic 45.0%
GCGAAGCAATGGAAGAAACA+AGG + chr5_1:50217158-50217177 Msa0735170:intron 45.0%
AGGAATGGTGTACCCGAAAA+TGG + chr5_1:50217178-50217197 Msa0735170:CDS 45.0%
GGAATGGTGTACCCGAAAAT+GGG + chr5_1:50217179-50217198 Msa0735170:CDS 45.0%
TCTTCTTGGGATTGTGGAAG+TGG + chr5_1:50217379-50217398 Msa0735170:CDS 45.0%
CCGACCGACATTTGTGATTA+AGG + chr5_1:50217646-50217665 Msa0735170:intron 45.0%
CTAGTACTATTGGAGGAAGG+AGG + chr5_1:50217875-50217894 Msa0735170:CDS 45.0%
ACCTTTCAAGCTAAGGACTG+AGG + chr5_1:50217936-50217955 Msa0735170:CDS 45.0%
! ACCTCAGTCCTTAGCTTGAA+AGG - chr5_1:50217940-50217959 None:intergenic 45.0%
CATGGAAGACCTTGTGCAAT+AGG - chr5_1:50218137-50218156 None:intergenic 45.0%
CTATTGCACAAGGTCTTCCA+TGG + chr5_1:50218135-50218154 Msa0735170:CDS 45.0%
ATGGGACAATCAGAGGCTAA+TGG - chr5_1:50218328-50218347 None:intergenic 45.0%
TCTCCTTGCCATGTTATGCT+AGG - chr5_1:50218646-50218665 None:intergenic 45.0%
TTTGTGCTTTCTTTCACGGG+AGG - chr5_1:50218969-50218988 None:intergenic 45.0%
! GGCTTTGTGCTTTCTTTCAC+GGG - chr5_1:50218972-50218991 None:intergenic 45.0%
GCACCTGATGATCAAATTCC+GGG - chr5_1:50219037-50219056 None:intergenic 45.0%
GGGATTGTGGAAGTGGAAGA+AGG + chr5_1:50217386-50217405 Msa0735170:CDS 50.0%
GTACTATTGGAGGAAGGAGG+TGG + chr5_1:50217878-50217897 Msa0735170:CDS 50.0%
TTTGAGGGCAATTGATCGCC+CGG + chr5_1:50219016-50219035 Msa0735170:CDS 50.0%
TCGCCCGGAATTTGATCATC+AGG + chr5_1:50219031-50219050 Msa0735170:CDS 50.0%
GGGATTGTGGAAGTGGAAGA+AGG + chr5_1:50217386-50217405 Msa0735170:CDS 50.0%
GTACTATTGGAGGAAGGAGG+TGG + chr5_1:50217878-50217897 Msa0735170:CDS 50.0%
TTTGAGGGCAATTGATCGCC+CGG + chr5_1:50219016-50219035 Msa0735170:CDS 50.0%
TCGCCCGGAATTTGATCATC+AGG + chr5_1:50219031-50219050 Msa0735170:CDS 50.0%
GTGTGTAGCAGGAGCTCTTC+TGG + chr5_1:50217551-50217570 Msa0735170:intron 55.0%
TGTAGCAGGAGCTCTTCTGG+TGG + chr5_1:50217554-50217573 Msa0735170:intron 55.0%
GTCGGTCGGTACTATAGAGC+TGG - chr5_1:50217635-50217654 None:intergenic 55.0%
ACATGTGTCGTGTCGGACAC+CGG - chr5_1:50217677-50217696 None:intergenic 55.0%
GTGTGTAGCAGGAGCTCTTC+TGG + chr5_1:50217551-50217570 Msa0735170:intron 55.0%
TGTAGCAGGAGCTCTTCTGG+TGG + chr5_1:50217554-50217573 Msa0735170:intron 55.0%
GTCGGTCGGTACTATAGAGC+TGG - chr5_1:50217635-50217654 None:intergenic 55.0%
ACATGTGTCGTGTCGGACAC+CGG - chr5_1:50217677-50217696 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 50216908 50219251 50216908 ID=Msa0735170;Name=Msa0735170
chr5_1 mRNA 50216908 50219251 50216908 ID=Msa0735170-mRNA-1;Parent=Msa0735170;Name=Msa0735170-mRNA-1;_AED=0.33;_eAED=0.40;_QI=0|0.5|0.42|1|0.33|0.42|7|0|308
chr5_1 exon 50216908 50217145 50216908 ID=Msa0735170-mRNA-1:exon:14203;Parent=Msa0735170-mRNA-1
chr5_1 exon 50217164 50217407 50217164 ID=Msa0735170-mRNA-1:exon:14204;Parent=Msa0735170-mRNA-1
chr5_1 exon 50217562 50217595 50217562 ID=Msa0735170-mRNA-1:exon:14205;Parent=Msa0735170-mRNA-1
chr5_1 exon 50217862 50217957 50217862 ID=Msa0735170-mRNA-1:exon:14206;Parent=Msa0735170-mRNA-1
chr5_1 exon 50218056 50218175 50218056 ID=Msa0735170-mRNA-1:exon:14207;Parent=Msa0735170-mRNA-1
chr5_1 exon 50218954 50219052 50218954 ID=Msa0735170-mRNA-1:exon:14208;Parent=Msa0735170-mRNA-1
chr5_1 exon 50219159 50219251 50219159 ID=Msa0735170-mRNA-1:exon:14209;Parent=Msa0735170-mRNA-1
chr5_1 CDS 50216908 50217145 50216908 ID=Msa0735170-mRNA-1:cds;Parent=Msa0735170-mRNA-1
chr5_1 CDS 50217164 50217407 50217164 ID=Msa0735170-mRNA-1:cds;Parent=Msa0735170-mRNA-1
chr5_1 CDS 50217562 50217595 50217562 ID=Msa0735170-mRNA-1:cds;Parent=Msa0735170-mRNA-1
chr5_1 CDS 50217862 50217957 50217862 ID=Msa0735170-mRNA-1:cds;Parent=Msa0735170-mRNA-1
chr5_1 CDS 50218056 50218175 50218056 ID=Msa0735170-mRNA-1:cds;Parent=Msa0735170-mRNA-1
chr5_1 CDS 50218954 50219052 50218954 ID=Msa0735170-mRNA-1:cds;Parent=Msa0735170-mRNA-1
chr5_1 CDS 50219159 50219251 50219159 ID=Msa0735170-mRNA-1:cds;Parent=Msa0735170-mRNA-1
Gene Sequence

>Msa0735170

ATGACACCAGAGAAGAAGAAACCCTTGGAAATTGAGAATTTGAACCCTAATGAGTTTTCTAATCGAAACCCACTTCAGAAATCGTCGAATAAAGCTGAGAATAATTGTGTTAATGTTTCTGTTGTTTCGCCGCAGAAGAGAATTCGTCAGAGAAAGTTTGTGGTTGCAAAGAAGAAGAAGAATGATCAAAGTCCTGAGAAAACGGTTTTGTGTAAATGTGGAGCGAATAGTGATGGAACAATGGAAGAAACAAGGAATGGTGTACCCGAAAATGGGAAAGTGATGCATTTGGTGAAGGATTTTGAGAGGTTACTTAGTATAAAAAGGGAGAAAGAGAAGAATGAGGATGAGGAAGAGAATGAGAAGAAGAATAAGGTGATGAAACAACCTGTTAAGGATGAAGATGAACTATCTGAAGTTGTTTCTGGATTGGATCAAAGGGTTACAGTTACATCTTCTTGGGATTGTGGAAGTGGAAGAAGGAGCTCTTCTGGTGGTAGAAGAAGCAGAAGAAATAGCTTGGAATCATCTAGTACTATTGGAGGAAGGAGGTGGAAGAAGAAGCAGAAGCTAAAAGTCACTAGTCAGAAACCTTTCAAGCTAAGGACTGAGCAAAGGGGAAAGATGAAAGAAGAACAGTTGATGAAGAAGGTAAAAGAGATTTTGACAGAAGAAGAAAAGATGAGAGTACCTATTGCACAAGGTCTTCCATGGACTATTGATGAACCTGAGTGCTTGCTAAAACCTCCCGTGAAAGAAAGCACAAAGCCTATTGATGTGAAGCTTCATAGTGATTTGAGGGCAATTGATCGCCCGGAATTTGATCATCAGAACAACAGAAAAGGGAATTGGAAATACAACAAAAGGTACCATGTTTACCAACTTTCACATCTCAAATCAGTGTGTCCTAATTTTGAGTTGCCA

Protein sequence

>Msa0735170

MTPEKKKPLEIENLNPNEFSNRNPLQKSSNKAENNCVNVSVVSPQKRIRQRKFVVAKKKKNDQSPEKTVLCKCGANSDGTMEETRNGVPENGKVMHLVKDFERLLSIKREKEKNEDEEENEKKNKVMKQPVKDEDELSEVVSGLDQRVTVTSSWDCGSGRRSSSGGRRSRRNSLESSSTIGGRRWKKKQKLKVTSQKPFKLRTEQRGKMKEEQLMKKVKEILTEEEKMRVPIAQGLPWTIDEPECLLKPPVKESTKPIDVKLHSDLRAIDRPEFDHQNNRKGNWKYNKRYHVYQLSHLKSVCPNFELP